RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8697
(508 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 165 bits (419), Expect = 1e-45
Identities = 112/459 (24%), Positives = 207/459 (45%), Gaps = 72/459 (15%)
Query: 57 GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSK 116
G S + +GS G + D GRK SL++ V ++I +LL A + +L + +
Sbjct: 49 GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGR 108
Query: 117 ICAGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLD------- 168
+ G+G GG+S + +Y+SEI + R A+ L + I+ GIL+ I+ L L+
Sbjct: 109 VIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 169 WRSLSYCFLALVL-ISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEI 227
WR L V I L+ + F PESP WL+ + ++ +A L L ++
Sbjct: 169 WRIP--LGLQFVPAILLLIGLLFLPESPRWLV-------LKGKLEEARAVLAKLRGVSDV 219
Query: 228 FEKEWRVLCQVRTRYDETRN-KKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFY 286
++ + + + + + +KA W ++ + + L++ V+L QQ TG+ + +Y
Sbjct: 220 DQE----IQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYY 275
Query: 287 AMQLFKEVGTEIDESHALVF-LGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
+ +F+ +G + +S + +G++ F + + L FGR+ LL++ AAG+ + ++L
Sbjct: 276 SPTIFETLG--LSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333
Query: 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSD 405
LL + I
Sbjct: 334 GVALLGVAKSKGAGI--------------------------------------------- 348
Query: 406 WLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFA 465
++++FILL++ F A+G +PW ++SEL P R + + ++ F + FP
Sbjct: 349 -VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407
Query: 466 IHSSVIGTFNVFGLVSFTLVGFVYFYLPETKGKTFVEIE 504
+ F VF + + FV+F++PETKG+T EI+
Sbjct: 408 TGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 147 bits (372), Expect = 8e-39
Identities = 125/481 (25%), Positives = 213/481 (44%), Gaps = 68/481 (14%)
Query: 38 LVYLKYLTRHYIVMFGSHF-GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYII 96
+ T + S G S ++ +G+ G + D GRK SL+++ + ++I
Sbjct: 54 PAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI 113
Query: 97 SSLLTILADPG-NIELLYLSKICAGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFIS 154
++L LA ++E+L + ++ GIG G S + +Y+SEI + R A+ L + I+
Sbjct: 114 GAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAIT 173
Query: 155 CGILL---TTILNLYLDWRSLSYCFLALVLIS---GLVLICFAPESPHWLINMDRTANVN 208
GIL+ + L+ L L LI + + F PESP WL+ R
Sbjct: 174 FGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRV---- 229
Query: 209 KRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYD-ETRNKKALWRQILT-TRECYKPLI 266
+A KSL L ++ L + + E R+ + W + + TR + L
Sbjct: 230 ---EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF 286
Query: 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHALVF---LGIIRFGMSVVTTVLAR 323
L V+L QQFTG+ +++Y+ +F+ G + HA + +G + F + V L
Sbjct: 287 LGVVLQWFQQFTGINAIMYYSPTIFENAG--VSTDHAFLVSIIVGAVNFAFTFVAIFLVD 344
Query: 324 GFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNE 383
FGR+ LL++ AAG+ + +L
Sbjct: 345 RFGRRPLLLIGAAGMAICLFVL-------------------------------------- 366
Query: 384 MQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVC 443
+S V SS SS ++++FILL++ F A+G +PW ++SE+ P R
Sbjct: 367 ------GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 444 SGLMISYGYVCMFFMVKAFPFAIHSSVIG-TFNVFGLVSFTLVGFVYFYLPETKGKTFVE 502
+ ++ ++ F + FP + S +G F FG ++ + FVYF+LPETKG+T E
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 503 I 503
I
Sbjct: 481 I 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 98.2 bits (245), Expect = 6e-22
Identities = 100/485 (20%), Positives = 196/485 (40%), Gaps = 106/485 (21%)
Query: 57 GPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSL-------LTILADPGNI 109
G + +I +G + G + GR+ SL + V + IS+L P N
Sbjct: 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNT 117
Query: 110 ELLY---LSKICAGIGGGM-STVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNL 165
+ + +I GIG G+ S ++ +Y++EI + R ++ N I G L+ +N
Sbjct: 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY 177
Query: 166 Y------------LDWRSLSYCFLALVLISGL--VLICFAPESPHWLINMDRTANVNKRM 211
+ WR Y F + + + L +L+ F PE+P +L++ +
Sbjct: 178 FIARSGDASWLNTDGWR---YMFASEAIPALLFLMLLYFVPETPRYLMSRGKQE------ 228
Query: 212 AKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLV-- 269
+AE L+ + N + L +++ D R ++L + ++++
Sbjct: 229 -QAEGILRKIMGN----TLATQALQEIKHSLDHGRKTGG---KLLM----FGVGVIVIGV 276
Query: 270 ILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHAL-VFLGIIRFGMSVVTTVLARGFGRK 328
+L QQF G+ V++YA ++FK +G D + + +G+I +V+ + FGRK
Sbjct: 277 MLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 336
Query: 329 QLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPP 388
L I+ A G+ +
Sbjct: 337 PLQIIGALGMAI------------------------------------------------ 348
Query: 389 SAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMI 448
F+ + + ++LL +L YV A+ + W ++SE+ P+ RG + +
Sbjct: 349 GMFSLGTAFYTQAPGI--VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV 406
Query: 449 SYGYVCMFFMVKAFP-FAIHSSVIGTFN------VFGLVSFTLVGFVYFYLPETKGKTFV 501
+ ++ +F+ FP +S ++ F+ ++G + F++ ++PETKGKT
Sbjct: 407 AAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466
Query: 502 EIEKY 506
E+E
Sbjct: 467 EMEAL 471
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 55.8 bits (135), Expect = 2e-08
Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 28/302 (9%)
Query: 56 FGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLS 115
G S +I G+ GP+ D IGR+ L+ + + + +LL LA N+ L +
Sbjct: 54 LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLIL 111
Query: 116 KICAGIG-GGMSTVAMVYVSEICHENFRPAIL----CLNSVFISCGILLTTILNLYLDWR 170
+ AG+G GG+ VSE + FR + C + + G L L WR
Sbjct: 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171
Query: 171 SLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEK 230
SL Y L+ L+L+ F PES +L+ R V + + ++ E
Sbjct: 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLV-SKRPETVRRIVNAIAPQMQ--------AEA 222
Query: 231 EWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQL 290
+ + Q T+ + KAL++ +LL +L+ + GVY + + +L
Sbjct: 223 QSALPEQKATQGTKRSVFKALFQGKTARI-----TVLLWLLYFMLLV-GVYFLTNWLPKL 276
Query: 291 FKEVGTEIDESHALVFLGIIRFGM---SVVTTVLARGFGRKQLLIVSAAGLGVSSILLSS 347
E+G S A + FG S++ LA G + ++ G V ++L+ S
Sbjct: 277 MVELG--FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG-AVFAVLVGS 333
Query: 348 NL 349
L
Sbjct: 334 TL 335
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 54.3 bits (131), Expect = 9e-08
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 59 TTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKIC 118
T S + +GS V G + D GRK L+L + +S +LT + N + + ++
Sbjct: 132 TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFRLL 189
Query: 119 AGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCG-ILLTTILNLYLDWRSLSYCF 176
G+G GG+ A+V +E + R + L VF S G +LL + DWR L
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWL-QLA 248
Query: 177 LALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLK 219
++L +L F PESP WLI R+ +A K L+
Sbjct: 249 VSLPTFLFFLLSWFVPESPRWLI-------SQGRIEEALKILQ 284
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 50.8 bits (122), Expect = 9e-07
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S + +GS + G + D GR+ L+L + + + SLL A ++ LL + +
Sbjct: 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRFLL 97
Query: 120 GIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-DWRSLSYCFL 177
G+G G + A ++E R L L S G LL +L L + + FL
Sbjct: 98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL 157
Query: 178 ALVLISGLVLICFA 191
L ++ L+ +
Sbjct: 158 ILAILGLLLALLLL 171
Score = 41.1 bits (97), Expect = 8e-04
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 1/161 (0%)
Query: 32 SGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVC 91
G + L YL + + + + G S + +G+ + G + D +GR+ L+L+
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248
Query: 92 VPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSV 151
+ LL + P LL + G + SE+ R L +
Sbjct: 249 LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNT 308
Query: 152 FISCG-ILLTTILNLYLDWRSLSYCFLALVLISGLVLICFA 191
F S G L + L LD FL L ++ L +
Sbjct: 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
Score = 29.2 bits (66), Expect = 5.8
Identities = 22/93 (23%), Positives = 33/93 (35%)
Query: 401 SLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVK 460
+L+ LL LL + F T+ SEL P ARG SGL ++G +
Sbjct: 260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL 319
Query: 461 AFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLP 493
+ + G + L + LP
Sbjct: 320 LAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS-T 127
+ S + G + D GRK L++ +++S+ + L+ NI +L +++ G G +
Sbjct: 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALV 70
Query: 128 VAMVYVSEICHENFRPAILCLNSVFISC----GILLTTILNLYLDWRSLSYCFLALVLIS 183
+++I R L L S I+ G L +L +L WR+ L L +
Sbjct: 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130
Query: 184 GLVLICFAPES 194
++L PE+
Sbjct: 131 FILLAFLLPET 141
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 46.6 bits (111), Expect = 2e-05
Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 43/288 (14%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
+ + + + G + D GR+ L++ + + + LL + A ++ LL + ++
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA--SSLWLLLVLRVLQ 95
Query: 120 GIGGG-MSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-DWRSLSYCFL 177
G+GGG + A +++ R L L S G L +L L FL
Sbjct: 96 GLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFL 155
Query: 178 ALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQ 237
L +++ L + A L+ + + A+
Sbjct: 156 ILAILALLAAVLAA-----LLLPRPPPESKRPKPAE------------------------ 186
Query: 238 VRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTE 297
+ W+ +L + L LL+ F P+ + L +
Sbjct: 187 -----EAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL-----SA 236
Query: 298 IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
+ L G++ ++ L+ GR++ L+++ L ++++ L
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGL 284
Score = 32.8 bits (75), Expect = 0.42
Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 31 WSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILV 90
+ L YL + + ++ G G I + +G + D +GR+ L+L
Sbjct: 218 FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLL----LGRLSDRLGRRRRLLLA 273
Query: 91 CVPYIISSL-LTILADPGNIELLYLSKICAGIGGGMSTVA-MVYVSEICHENFRPAILCL 148
+ I+++L L +L+ + L ++ + G G G+ A VS++ + R L
Sbjct: 274 LLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGL 333
Query: 149 NSVFISCGILL 159
+ S G L
Sbjct: 334 YNTAGSLGGAL 344
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 39.1 bits (92), Expect = 0.004
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMST- 127
+G+ ++ + + R+ L+ + +I+S+LL+ LA + +L L++ AG+ G+
Sbjct: 63 LGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWS 120
Query: 128 VAMVYVSEICHENFRPAILCL----NSVFISCGILLTTILNLYLDWRSLSYCFLALVLIS 183
+A + + R L L ++ G+ L T L WR+ FLA+ +++
Sbjct: 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT---FLAIAVLA 177
Query: 184 GLVLICFAPESP 195
L L+ P
Sbjct: 178 LLALLLLWKLLP 189
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 39.1 bits (92), Expect = 0.005
Identities = 18/83 (21%), Positives = 37/83 (44%)
Query: 48 YIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPG 107
Y++ F I + +G+ + + G+K + +L + I +L PG
Sbjct: 251 YVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPG 310
Query: 108 NIELLYLSKICAGIGGGMSTVAM 130
++ L + + AGIG G++T+
Sbjct: 311 SLWLFLVLVVLAGIGLGLATLLP 333
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 35.2 bits (81), Expect = 0.065
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 10/162 (6%)
Query: 60 TSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICA 119
S +I+ G+ + G D GR+ ++ V + +L A ++++++
Sbjct: 53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVI 110
Query: 120 GIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY------LDWRSL 172
GIG GG + YV E ++ R L + G ++ + WR+L
Sbjct: 111 GIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRAL 170
Query: 173 SYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKA 214
+ + ++ + L L PE+ W A V +
Sbjct: 171 FFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDIL 211
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 35.3 bits (82), Expect = 0.073
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 32 SGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTV-IGPIMDYIGRKWSLILV 90
S + YY+ Y ++ F + + ++ G+K ++
Sbjct: 257 SIMVYYVTY--------VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG 308
Query: 91 CVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAMVYV 133
+ + LL G++ L+ ++ I AG+G G++ +
Sbjct: 309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAM 351
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 35.0 bits (81), Expect = 0.081
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 75 GPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIG-GGMSTVAMVYV 133
G I D GRK I +II+SLL LA+ + L + GIG G VA +
Sbjct: 59 GKIADRSGRKPVAIPGAALFIIASLLCSLAETSS--LFLAGRFLQGIGAGCCYVVAFAIL 116
Query: 134 SEICHENFRPAILC-LNSVFISCGI-----LLTTILNLYLDWRSLSYCFLALVLISGLV 186
+ + R +L LN I+C I +L ++ L W+SL Y A+ ++ L+
Sbjct: 117 RDTLDDRRRAKVLSLLNG--ITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 33.3 bits (77), Expect = 0.27
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 75 GPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTVAMVYVS 134
GP+ D +GR+ +++ +I+ +L+ + A ++ +L + G+G G+ V +
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLP 121
Query: 135 EICHENFRPAILCLNSVFISCGIL--------LTTILNLYLDWRSLSYCFLALVLISGLV 186
+E + NS ++ GIL + +L WR+ Y FL L+
Sbjct: 122 RDLYEG--TQLRHANS-LLNMGILVSPLLAPLIGGLLTTLFGWRA-CYLFLLLLGAGVTF 177
Query: 187 LICFA-PES 194
+ PE+
Sbjct: 178 SMARWMPET 186
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 32.3 bits (74), Expect = 0.53
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 400 SSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMV 459
+ ++ + +L + L F G I W +IS+ P G+ GL+ S G +
Sbjct: 307 NYVNIPYAALALVALGFFGLGAGAI--GWALISDNAPGNIAGLTGGLINSLGNLGGIVGP 364
Query: 460 KAFPFAIHSSVIGTFN---VFGLVSFTLVGFVYFYL 492
+ G+F + + Y L
Sbjct: 365 IVIGAIA--ATTGSFAGALMVVAALALIGALSYLLL 398
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 32.2 bits (73), Expect = 0.56
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 23 YLHMYTQRW-SGLFYYLVYLKY-LTRHYI-VMFGSHFGPTTSFVIITSPVGSTVIGPIMD 79
Y M W G + Y +Y Y ++ I ++F + FG + F T++G + D
Sbjct: 43 YSMMMAGDWLQGPYVYYLYSSYGFSKGDIGILFIAGFGSSMLF--------GTIVGSLAD 94
Query: 80 YIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGM--STVAMVYVSEIC 137
GRK + + C+ YI+S I N ++L + + GI + S ++E
Sbjct: 95 KQGRKRACLTYCILYILS---CITKHSPNYKVLMIGRFLGGIATSLLFSAFESWLIAEHN 151
Query: 138 HENFRPAILCL---NSVFISCGIL 158
F L + F+ G++
Sbjct: 152 KRGFSDQWLSTTFSKAAFLGNGLV 175
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 32.2 bits (74), Expect = 0.61
Identities = 64/301 (21%), Positives = 107/301 (35%), Gaps = 62/301 (20%)
Query: 68 PVGSTVIGPIMDYIGRKWSLILVCVPYIISSLL--------TI-LADPGNIELLYLSKIC 118
P+G+ V G D IGRK +L++ + I +LL TI + P LL L+++
Sbjct: 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPI---LLLLARLI 105
Query: 119 AGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCFL 177
G GG A +Y++E R V G+LL + L L + L
Sbjct: 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALL 165
Query: 178 A----LVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWR 233
+ + VL+ +L R E +FEK
Sbjct: 166 EWGWRIPFLVSAVLVLIG----LYL-----------RRNLEETP---------VFEKA-- 199
Query: 234 VLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE 293
+ ++KK I T ++ LL + + T Y + Y + +
Sbjct: 200 ----------QEKHKKKR-GPIAETLTKHRKPFLLGLGLVIATTTTFYLITTY-LPTYLT 247
Query: 294 VGTEIDESHALVFLGIIRFGMSVVTTV---LARGFGRKQLLIVSAAGLGVSSILLSSNLL 350
+ + AL+ L + + + L+ GR+ +LI V + LL+ LL
Sbjct: 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI----IFTVLAALLAVPLL 303
Query: 351 M 351
M
Sbjct: 304 M 304
>gnl|CDD|218836 pfam05977, MFS_3, Transmembrane secretion effector. This is a
family of transport proteins. Members of this family
include a protein responsible for the secretion of the
ferric chelator, enterobactin, and a protein involved in
antibiotic resistance.
Length = 524
Score = 32.3 bits (74), Expect = 0.66
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 71 STVIGPIMDYIGRKWSLILV-CVPYIISSLLTILADPG--NIELLYLSKICAGIGGGMST 127
S G I D R+ ++ + I S+LLT+LA G + LL GIG ++
Sbjct: 62 SIPAGAIADNFDRRKVMLAGQLLMAIASALLTVLAALGLLSPWLLLAFTFLIGIGTALND 121
Query: 128 VA-MVYVSEICHENFRPAILCLNSV 151
A V ++ PA + LNSV
Sbjct: 122 PAWQASVGDLVPRRDVPAAVALNSV 146
>gnl|CDD|183173 PRK11519, PRK11519, tyrosine kinase; Provisional.
Length = 719
Score = 32.0 bits (73), Expect = 0.87
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 206 NVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQ 254
N+ ++ +A KSL FL + L +VR+R D NK +RQ
Sbjct: 257 NIERKSEEASKSLAFLAQQ----------LPEVRSRLDVAENKLNAFRQ 295
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 31.0 bits (71), Expect = 0.90
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 200 NMDRTANVNKRM----AKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKK 249
M A NKR+ KAE+ ++ L + + +EK+ + L ++ R E +
Sbjct: 49 LMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLKARLKELEKEL 102
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 31.5 bits (72), Expect = 0.97
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIG-GGMST 127
G+ + G + D IGRK LI+ + + SL T A + L ++++ G+G GG
Sbjct: 65 PGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW--DFPSLLVARLLTGVGLGGALP 122
Query: 128 VAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYC--FLALVL 181
+ SE R + L + G L +++ + WR + Y L+L
Sbjct: 123 NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLL 182
Query: 182 ISGLVLICFAPESPHWL 198
+ +L+ + PES +
Sbjct: 183 V--PLLMRWLPESRAFA 197
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 31.1 bits (71), Expect = 1.5
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 74 IGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIG-GGMSTVAMVY 132
+GP+ D IGR+ ++ +I++ L +LA +IE L + GIG + V
Sbjct: 68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAA 125
Query: 133 VSEICHENFRPAI----LCLNSVFIS--CGILLTTILNLYLDWRSLSYCFLALVLISGLV 186
+ E E AI L N ++ G L+ L L WR + F AL +S
Sbjct: 126 IQESFEE--ADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG 183
Query: 187 LICFAPE 193
L PE
Sbjct: 184 LWRAMPE 190
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 30.0 bits (68), Expect = 2.9
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 68 PVGSTV-----IGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIG 122
PV + +G ++D G +++ L + I L LA + +L L ++ GI
Sbjct: 46 PVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-SYSVLLLLRLFIGIA 104
Query: 123 GGMSTVAMVYVSE 135
GG M ++S
Sbjct: 105 GGSFASCMPWISF 117
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 30.1 bits (68), Expect = 3.2
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 24/141 (17%)
Query: 70 GSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIG-GGMSTV 128
G ++G + D GR+ ++++ V + + +L A PG L+++++ G+G G
Sbjct: 71 GGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-PGYW-TLFIARLVIGMGMAGEYGS 128
Query: 129 AMVYVSEICHENFR-PAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLIS 183
+ YV E ++ R A L S F S G ++ + + WR+L
Sbjct: 129 SATYVIESWPKHLRNKASGFLISGF-SIGAVVAAQVYSLVVPVWGWRAL--------FFI 179
Query: 184 GLVLICFA-------PESPHW 197
G++ I FA PE+ W
Sbjct: 180 GILPIIFALWLRKNLPEAEDW 200
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 29.9 bits (67), Expect = 3.4
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 19/197 (9%)
Query: 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVP 93
L +Y++YL M G+ T +F I P G + G + D GRK ++ V
Sbjct: 36 LIFYIMYLIKADLGLTDMEGAFLA-TAAF--IGRPFGGALFGLLADKFGRKPLMMWSIVA 92
Query: 94 YIISSLLTILADPGNIELLYLSKICAGIG-GGMSTVAMVYVSEICHENFRPAILCLNSVF 152
Y + + L+ LA + +L LS+ G+G G A Y E ++ + S F
Sbjct: 93 YSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA----SAF 146
Query: 153 ISCGILLTTILNLYL--------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRT 204
+ G + I+ Y WR+ + L VL+ + + APES W
Sbjct: 147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLV-IYIRARAPESKEWEEAKLSG 205
Query: 205 ANVNKRMAKAEKSLKFL 221
+ + A + SL
Sbjct: 206 KGKHSQSAWSVFSLSMK 222
>gnl|CDD|221171 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autophagy is a
major survival survival mechanism in which eukaryotes
recycle cellular nutrients during stress conditions.
Atg22, Avt3 and Avt4 are partially redundant vacuolar
effluxes, which mediate the efflux of leucine and other
amino acids resulting from autophagy. This family also
includes other transporter proteins.
Length = 475
Score = 29.6 bits (67), Expect = 4.4
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 49 IVMFGSHFGPTTSFVIITSPVG-------STVIGPIMDYIG-RKWSLILVCVPYIISSLL 100
+V F T SFV+ T + +G I DY RK LI + +S++L
Sbjct: 57 VVPFFGGEINTASFVLYTFSISVLIQAVLFISLGGIADYGNYRKNLLIAFALLGGLSTIL 116
Query: 101 TILADPGNIELLYLSKICAGIG 122
+ P L + IG
Sbjct: 117 FLGVTPDQ---YLLGAVLYIIG 135
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 29.5 bits (67), Expect = 4.9
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 55 HFGPTTSFVIITSPVGST-----VIGPIMDYIGRKWSLILVCVPYIISSLLTILAD-PGN 108
+++ P+ G + D G + IL + +I L A +
Sbjct: 45 GLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS 104
Query: 109 IELLYLSKICAGIGGGMSTVAMVYVSE 135
L + + G+ G V M S
Sbjct: 105 TWQLLVIGLLLGLAGASFAVGMPNASF 131
>gnl|CDD|226709 COG4258, COG4258, Predicted exporter [General function prediction
only].
Length = 788
Score = 29.5 bits (66), Expect = 5.2
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 412 ILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVI 471
I +V G V PW +E+ P+ + + ++ Y M F FP +
Sbjct: 328 IYYFVEHMVPGNDVDPWRSAAEVRPALLLALLTTVL---AYATMLFS--PFPGLRQ---L 379
Query: 472 GTFNVFGLVSFTLVGFVYFYLP 493
F + GL++ L V F LP
Sbjct: 380 AIFAIVGLLAAALT--VRFLLP 399
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 28.9 bits (65), Expect = 7.2
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 411 FILLYV---FFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIH 467
F+ +YV FF+ G + + E+ P+ R G+ + G F +
Sbjct: 394 FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453
Query: 468 SS--------VIGTFNV---FGLVSFTLVGFVYFYLPETKGKTFVEIEK 505
I +V F L F + F +PETKGK+ E+
Sbjct: 454 HGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 28.9 bits (65), Expect = 8.3
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 304 LVFLGIIRFGMSVVTTVLARGFG--RKQLLIVSA------------AGLGVSSILLSSN 348
L L II FG S+ L R FG R+ L ++A AGLG++ LL
Sbjct: 306 LATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQA 364
>gnl|CDD|163470 TIGR03758, conj_TIGR03758, integrating conjugative element protein,
PFL_4701 family. Members of this family of small,
hydrophobic proteins are found occasionally on plasmids
such as the Pseudomonas putida TOL (toluene catabolic)
plasmid pWWO_p085. Usually, however, they are found on
the bacterial main chromosome in regions flanked by
markers of conjugative transfer and/or transposition
[Mobile and extrachromosomal element functions, Plasmid
functions].
Length = 65
Score = 26.2 bits (58), Expect = 9.0
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 389 SAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418
SAF +S +D ++++ L L+ +L+++
Sbjct: 6 SAFQAASGIDPQAMNTLILGLVLAVLFLWG 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.440
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,090,602
Number of extensions: 2594923
Number of successful extensions: 4047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3989
Number of HSP's successfully gapped: 170
Length of query: 508
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 407
Effective length of database: 6,457,848
Effective search space: 2628344136
Effective search space used: 2628344136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.2 bits)