RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8697
(508 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 3e-09
Identities = 84/513 (16%), Positives = 155/513 (30%), Gaps = 156/513 (30%)
Query: 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIM------DYIGRKWSL 87
LF+ L L F + SP+ + P M + R ++
Sbjct: 67 LFWTL--LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 88 ILVCVPYIISSL---------LTILADPGNIELLYLSKICAGIGG-GMSTVAMVYVSEIC 137
V Y +S L L L N+ L+ G+ G G + VA ++C
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LID------GVLGSGKTWVA----LDVC 171
Query: 138 HENFRPAILCL--NSVFISCGILLTTILNLYLDWRSLSYCFLALVLISGLVLICFAPESP 195
+ C +F W +L C ++ L + + + P
Sbjct: 172 LSY---KVQCKMDFKIF----------------WLNLKNCNSPETVLEMLQKLLYQID-P 211
Query: 196 HWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWR----VLCQVRTRYDETRNKKAL 251
+W D ++N+ R+ + L+ L + K + VL +N K
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVL-------LNVQNAK-A 258
Query: 252 WR------QIL-TTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDESHAL 304
W +IL TTR +K + + T + + DE +L
Sbjct: 259 WNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLD----------HHSMTLTPDEVKSL 306
Query: 305 V--FLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQS 362
+ +L R Q L L++N S
Sbjct: 307 LLKYLDC-----------------RPQDLPREV---------LTTNPRRLSIIA------ 334
Query: 363 NEYLVTPNESMRLDHSTWHNEMQVPPSAFNT--SSCVDHSSLSSDWLSLLFILLYVFFSA 420
ES+R +TW N V T S ++ L +F L VF +
Sbjct: 335 --------ESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPS 384
Query: 421 V----GVIVIPWT-MISELLPSYARGVCSGLMI-------SYGYVCMFFMVKAFP---FA 465
++ + W +I + + ++ + ++ +K +A
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 466 IHSSVIGTFNV------FGLVSFTLVGFVYFYL 492
+H S++ +N+ L+ L + Y ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Score = 34.1 bits (77), Expect = 0.13
Identities = 60/380 (15%), Positives = 99/380 (26%), Gaps = 156/380 (41%)
Query: 2 DRRFTSVRVPCLRKKSCTYVRYLHMYTQRWSGLFYYLVYLKYLTRH-YIV---MFGSHFG 57
DR + +V K + V L Y + L L ++ + G G
Sbjct: 117 DRLYNDNQV--FAKYN---VSRLQPYLKLRQAL-------LELRPAKNVLIDGVLG--SG 162
Query: 58 PTTSFVIITSPVGSTVIGPIMDY------IGRKWS-----LILVCVPYIISSLLTILAD- 105
T + S + MD+ + S +L + Y I T +D
Sbjct: 163 KT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 106 ----PGNIELL--YLSKICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSV-------- 151
I + L ++ + + + +L L +V
Sbjct: 220 SSNIKLRIHSIQAELRRL------------------LKSKPYENCLLVLLNVQNAKAWNA 261
Query: 152 F-ISCGILLTT-------ILN------LYLDWRSLSYC------FLALVL---------- 181
F +SC ILLTT L+ + LD S++ L L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 182 ---ISGLVLICFAPESPHWLINMDRTANVN-KRMAKA-EKSLKFLNRNPE---------- 226
+ L A L D +VN ++ E SL L P
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLS 379
Query: 227 IFEKE-----------W---------RVLCQVRTR--------------YD-------ET 245
+F W V+ ++ +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 246 RNKKALWRQILTTRECYKPL 265
N+ AL R I+ + Y
Sbjct: 440 ENEYALHRSIV---DHYNIP 456
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 41.1 bits (97), Expect = 7e-04
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV 128
V GPI D +GR+ +++ +++++L+ + ++ +L + G+G G+ V
Sbjct: 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGMGTGVGGV 107
Query: 129 -AMVYVSEICH-ENFRPAILCLNSVFISCGILLTTI---LNLYLDWRSLSYCFLALVLIS 183
A ++ R A LN + +L I L+ +WR+ C+L L+++
Sbjct: 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA---CYLFLLVLC 164
Query: 184 GLVLICFA---PES 194
V A PE+
Sbjct: 165 AGVTFSMARWMPET 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.28
Identities = 65/363 (17%), Positives = 122/363 (33%), Gaps = 129/363 (35%)
Query: 58 PTTSFVIITSPVGSTVIGPIMDYIGRKWSLI-LVCVPYIISSLLTILADPGNIELLYLSK 116
P + +++ P+ S P+ IG +I L Y++++ L PG + S
Sbjct: 226 PDKDY-LLSIPI-S---CPL---IG----VIQLAH--YVVTAKLLGF-TPGEL----RSY 266
Query: 117 ICAGIGGGMSTVAMVYVSE--------------------I---CHENF-----RPAILCL 148
+ G V V ++E I C+E + P+IL
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL-E 325
Query: 149 NSVFISCGI--------------LLTTI--LNLYLDWRSLSYCFLALV------LISGLV 186
+S+ + G+ + + N +L ++LV ++SG
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE--ISLVNGAKNLVVSG-- 381
Query: 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSL-----KFLNRNPEIFEKEWRVLCQVRTR 241
P+S L + N+ R AKA L F R + R L V +
Sbjct: 382 ----PPQS---LYGL----NLTLRKAKAPSGLDQSRIPFSERKLKF---SNRFL-PVASP 426
Query: 242 Y-----DETRNK--KALWRQILTTRECYKPLILLVILF-T-----LQQFTG-VYPVIFYA 287
+ + K L + ++ + + + ++ T L+ +G + I
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVS----FNAKDIQIPVYDTFDGSDLRVLSGSISERI--V 480
Query: 288 MQLFK-----EVGTEIDESHALVF--LGIIRFGMSVVTTVLARGFG-RKQLLIVSAAGLG 339
+ + E T+ +H L F G G+ V+T G G R ++ A L
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGA--SGLGVLTHRNKDGTGVR----VIVAGTLD 534
Query: 340 VSS 342
++
Sbjct: 535 INP 537
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.54
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 181 LISGLVLICFAPES-PHWLINMDRTANV 207
L + L L +A +S P I A +
Sbjct: 25 LQASLKL--YADDSAPALAIK----ATM 46
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 31.2 bits (71), Expect = 0.75
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 400 SSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMV 459
+ S + +F + P + L G+ G+ + +
Sbjct: 221 GVIMSTIMYRIFNHEVALIDVGKLSDAPL---NTLWLYLILGIIFGIF-GPIFNKWVLGM 276
Query: 460 KAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLPETKG 497
+ +H I + + G L G + F P T G
Sbjct: 277 QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSG 314
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 30.0 bits (66), Expect = 1.7
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 2 DRRFTSVRVPCLRKKSCTYVRYLHMYTQRWSGLFYYLVYLKY 43
D S + + +K ++ + + G YL+Y +Y
Sbjct: 20 DDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRY 61
>3fd9_A Uncharacterized protein; anti-activator, transcription regulation,
repressor, type III secretion, unknown function; 2.60A
{Pseudomonas aeruginosa ucbpp-pa14}
Length = 256
Score = 29.4 bits (65), Expect = 2.4
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 195 PHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALW 252
P+W M A L PE+ E W+ LC++ D+ A+
Sbjct: 191 PNWQRGMATL--------LASGGLAGFEPIPEVLECLWQPLCRL---DDDVGAADAVQ 237
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 29.6 bits (66), Expect = 3.3
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 27/116 (23%)
Query: 405 DWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPF 464
+ L FSA+ ++ +I E Y G Y F + A
Sbjct: 568 EVWIALGA----VFSAL-EVIPLTLLILEAYEQYKMMRDGGANFPYKATFWFLISTAIWN 622
Query: 465 AIHSSVIGTFN----------------------VFGLVSFTLVGFVYFYLPETKGK 498
+ + V G + G+ + + + L
Sbjct: 623 LVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAIAVLLYSLRNIVKP 678
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 29.2 bits (66), Expect = 3.5
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 403 SSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAF 462
+ + ++ +++ F V++I EL P A G +G +GY+ A
Sbjct: 344 GNPTVDMICMIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402
Query: 463 PFAIHSSVIGTFNVF-GLVSFTLVGFVYFYL 492
G F ++ +++ + +
Sbjct: 403 VGYT-VDFFGWDGGFMVMIGGSILAVILLIV 432
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 28.6 bits (63), Expect = 5.5
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 181 LISGLVLICFAPESPHWLINMDRTANVNKRMAKAEK--------SLKFLNRNPEIFEKEW 232
+ GLVLI P + W MD A+ + + S + L+ N E+ +
Sbjct: 135 TVEGLVLINIDPNAKGW---MDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQ--- 188
Query: 233 RVLCQVRTRYDETRNKKALWR 253
+ R N + +
Sbjct: 189 ----KYRGIIQHAPNLENIEL 205
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 28.4 bits (63), Expect = 6.6
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 69 VGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS-- 126
+ G +M + K +I Y + + L A L+L + I G+
Sbjct: 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFI-IAAGLGCL 134
Query: 127 -TVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL 167
T A +V+ + E+ L L F S G ++ + L
Sbjct: 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.440
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,763,805
Number of extensions: 459565
Number of successful extensions: 1011
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 30
Length of query: 508
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 410
Effective length of database: 3,965,535
Effective search space: 1625869350
Effective search space used: 1625869350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.7 bits)