RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8697
         (508 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 35.4 bits (80), Expect = 0.013
 Identities = 32/306 (10%), Positives = 77/306 (25%), Gaps = 8/306 (2%)

Query: 54  SHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL--ADPGNIEL 111
              G   S + I       ++G + D    +  L    +      L          +I +
Sbjct: 59  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 118

Query: 112 LYLSKICAGIGG-GMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLY---- 166
           +++     G             +     +  R  I+ + +   + G  +  +L L     
Sbjct: 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178

Query: 167 -LDWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNP 225
             DW +  Y      ++  L       ++P            N       +  +      
Sbjct: 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 238

Query: 226 EIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIF 285
           +IF +       +            L   IL     Y   +    L        +Y    
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298

Query: 286 YAMQLFKEVGTEIDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILL 345
               L     ++          G+    +  + T++          +     + +  ++ 
Sbjct: 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 358

Query: 346 SSNLLM 351
              +L+
Sbjct: 359 GPVMLI 364



 Score = 33.5 bits (75), Expect = 0.056
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 403 SSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAF 462
           + +    +  ++ + F   G +++      EL P  A G  +G    +GY+       A 
Sbjct: 340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 399

Query: 463 PFAI--HSSVIGTFNVFGLVSFTLVGFVYFYLPETKGK 498
                      G F V    S   V  +   +   K +
Sbjct: 400 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 31.3 bits (69), Expect = 0.28
 Identities = 14/180 (7%), Positives = 47/180 (26%), Gaps = 8/180 (4%)

Query: 53  GSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELL 112
            S  G   + + + S +   + G + D +G +  L+ +    ++      +   G +   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 113 YLSKICAGIGGGMSTVAMVYVSEICHENFRPA--------ILCLNSVFISCGILLTTILN 164
            +       G  +          +     + +           +              + 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM 161

Query: 165 LYLDWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRN 224
             ++ + + +      LI  ++L     ++P      +     +   +       F    
Sbjct: 162 FTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPK 221


>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 209

 Score = 30.3 bits (68), Expect = 0.44
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 19/95 (20%)

Query: 117 ICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCF 176
           I  G+GGG  T +   V+EI  +                G L   ++ L           
Sbjct: 105 ITCGLGGGTGTGSAPVVAEISKK---------------IGALTVAVVTLPFVMEGKVRMK 149

Query: 177 LALVLISGLVLICFAPESPHWLINMDRTANVNKRM 211
            A+  +  L            +I  ++   +   M
Sbjct: 150 NAMEGLERLKQHT----DTLVVIPNEKLFEIVPNM 180


>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
           maritima [TaxId: 2336]}
          Length = 194

 Score = 28.4 bits (63), Expect = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 117 ICAGIGGGMSTVAMVYVSEICHE 139
           I AG GGG  T A   +++I  E
Sbjct: 90  ITAGFGGGTGTGASPVIAKIAKE 112


>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 198

 Score = 27.9 bits (62), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 117 ICAGIGGGMSTVAMVYVSEICHE 139
           I  G+GGG  T A   ++E+  E
Sbjct: 91  ITTGMGGGTGTGAAPIIAEVAKE 113


>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 198

 Score = 26.8 bits (59), Expect = 5.8
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 19/106 (17%)

Query: 117 ICAGIGGGMSTVAMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSLSYCF 176
           + AG GGG  T     V+ I  +                G L   ++     +       
Sbjct: 91  VTAGEGGGTGTGGAPVVASIARK---------------LGALTVGVVTRPFSFEGKRRSN 135

Query: 177 LALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLN 222
            A   I+ L   C        +I  DR   +         + +  +
Sbjct: 136 QAENGIAALRESCDT----LIVIPNDRLLQMGDAAVSLMDAFRSAD 177


>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8,
          Kaposi's sarcoma herpes-virus [TaxId: 37296]}
          Length = 167

 Score = 25.9 bits (57), Expect = 7.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 32 SGLFYYLVYLKYLTRHY 48
           G F + V  K+LT  +
Sbjct: 71 DGFFEFEVLFKFLTTEF 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,920,024
Number of extensions: 88517
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 13
Length of query: 508
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,185,626
Effective search space: 496777294
Effective search space used: 496777294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.3 bits)