BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8699
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 216/297 (72%), Positives = 267/297 (89%)
Query: 29 EDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88
EDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFADYIFP
Sbjct: 46 EDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFP 105
Query: 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIP 148
AFDQIVNEAAKYRYRSG+ F+CG+LTIR+P VGHGALYHSQSPEA+FAH PGIKVVIP
Sbjct: 106 AFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIP 165
Query: 149 RGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLI 208
R P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP + Y +PL +A+++ G+DVTL+
Sbjct: 166 RSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLV 225
Query: 209 GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+ +S KTGR++I+HEAPLT
Sbjct: 226 AWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTG 285
Query: 269 GFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY 325
GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++ Y
Sbjct: 286 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 342
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 476 bits (1225), Expect = e-135, Method: Compositional matrix adjust.
Identities = 216/297 (72%), Positives = 267/297 (89%)
Query: 29 EDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88
EDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFADYIFP
Sbjct: 46 EDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFP 105
Query: 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIP 148
AFDQIVNEAAKYRYRSG+ F+CG+LTIR+P VGHGALYHSQSPEA+FAH PGIKVVIP
Sbjct: 106 AFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIP 165
Query: 149 RGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLI 208
R P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP + Y +PL +A+++ G+DVTL+
Sbjct: 166 RSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLV 225
Query: 209 GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+ +S KTGR++I+HEAPLT
Sbjct: 226 AWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTG 285
Query: 269 GFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY 325
GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++ Y
Sbjct: 286 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 342
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 473 bits (1217), Expect = e-134, Method: Compositional matrix adjust.
Identities = 215/297 (72%), Positives = 266/297 (89%)
Query: 29 EDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88
EDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFADYIFP
Sbjct: 46 EDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFP 105
Query: 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIP 148
AFDQIVNEAAKYRYRSG+ F+CG+LTIR+P VGHGALY SQSPEA+FAH PGIKVVIP
Sbjct: 106 AFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYASQSPEAFFAHCPGIKVVIP 165
Query: 149 RGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLI 208
R P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP + Y +PL +A+++ G+DVTL+
Sbjct: 166 RSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLV 225
Query: 209 GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+ +S KTGR++I+HEAPLT
Sbjct: 226 AWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTG 285
Query: 269 GFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY 325
GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++ Y
Sbjct: 286 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 342
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 196/311 (63%), Gaps = 22/311 (7%)
Query: 29 EDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87
+DVG FGGVFRC+ GLQ KYGK RVF+ P+SE GIVG +G+ G + EIQFADY +
Sbjct: 31 QDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFY 90
Query: 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVI 147
PA DQIV+E A+ RYRS +F LT+R PC +G HSQSPEA F G++ V+
Sbjct: 91 PASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVM 149
Query: 148 PRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVED----------------VPEDYYEL 191
P PY AKGLL++ I+ DP IF EPK LY + VP+ YY +
Sbjct: 150 PSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTV 209
Query: 192 PLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS 251
PLDKA I G DV+++ +GT V+V A +A E+ GV EVIDL S+ P D +T+ +S
Sbjct: 210 PLDKAAITRPGNDVSVLTYGTTVYV----AQVAAEESGVDAEVIDLRSLWPLDLDTIVES 265
Query: 252 ARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPD 311
+KTGR ++ HEA T GFGAEL + +Q+ CF LEAPI RVTG+DTP+PH E Y P
Sbjct: 266 VKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQEWAYFPG 325
Query: 312 KWRCLEAVKQI 322
R A+K++
Sbjct: 326 PSRVGAALKKV 336
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 194/311 (62%), Gaps = 22/311 (7%)
Query: 29 EDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87
+DVG FGGVFRC+ GLQ KYGK RVF+ P+SE GIVG +G G + EIQFADY +
Sbjct: 30 QDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGXGAYGLRPVVEIQFADYFY 89
Query: 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVI 147
PA DQIV+E A+ RYRS +F LT+R PC +G HSQSPEA F G++ V
Sbjct: 90 PASDQIVSEXARLRYRSAGEF-IAPLTLRXPCGGGIYGGQTHSQSPEAXFTQVCGLRTVX 148
Query: 148 PRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVED----------------VPEDYYEL 191
P PY AKGLL++ I+ DP IF EPK LY + VP+ YY +
Sbjct: 149 PSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTV 208
Query: 192 PLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS 251
PLDKA I G DV+++ +GT V+V A +A E+ GV EVIDL S+ P D +T+ +S
Sbjct: 209 PLDKAAITRPGNDVSVLTYGTTVYV----AQVAAEESGVDAEVIDLRSLWPLDLDTIVES 264
Query: 252 ARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPD 311
+KTGR ++ HEA T GFGAEL + +Q+ CF LEAPI RVTG+DTP+PH E Y P
Sbjct: 265 VKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQEWAYFPG 324
Query: 312 KWRCLEAVKQI 322
R A+K++
Sbjct: 325 PSRVGAALKKV 335
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 280 bits (716), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 196/299 (65%), Gaps = 5/299 (1%)
Query: 29 EDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87
EDVG GGVF + GL +KYG RV +TPLSE IVG +G+A G +AEIQFADYIF
Sbjct: 29 EDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIF 88
Query: 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVI 147
P FDQ+V++ AK RYRSG QF+ L +R P G +HSQSPEA+F HT G+KVV
Sbjct: 89 PGFDQLVSQVAKLRYRSGGQFTA-PLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVA 147
Query: 148 PRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTL 207
PY AKGLL + I+D+DP +F EPK LYR+ E+VPE+ Y LP+ KA + G D+TL
Sbjct: 148 VSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTL 207
Query: 208 IGWGTQV-HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPL 266
I +GT + VL+ A LAK GVS EV+DL +++PWD E V S KTGRV++ +AP
Sbjct: 208 ICYGTVMPEVLQAAAELAKA--GVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPR 265
Query: 267 TSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY 325
+ F +E+AA+I + L AP RVTG+DTP+P+ + Y+P R L A K+ Y
Sbjct: 266 HASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQDKLYLPTVTRILNAAKRALDY 324
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 189/299 (63%), Gaps = 7/299 (2%)
Query: 29 EDVGF-GGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87
EDVG GGVF + GL E++G RV +TPL+E GI+GF +G+A++G +AEIQF D+I+
Sbjct: 76 EDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIW 135
Query: 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVI 147
D+++N AK RYRSG + L +R P + G LYHS SPEA F HTPG+ VV+
Sbjct: 136 LGADELLNHIAKLRYRSGGNYKA-PLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVM 194
Query: 148 PRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTL 207
P PY AKGLL + I+ DP +F EPK+LYRA E+VPE Y + + KA + G DVTL
Sbjct: 195 PSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGDDVTL 254
Query: 208 IGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLT 267
+ +G VH E A E++ S EV+DL ++ P D +TV +S KTGR+IIAH++P T
Sbjct: 255 VTYGAVVHKALEAA----ERVKASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKT 310
Query: 268 SGFGAELAASIQDKCFLSLEAPIRRVTGYDTP-FPHIFEPFYIPDKWRCLEAVKQITRY 325
G GAE+ A + +K L AP+ R+ G D P P + Y P R ++A++ + RY
Sbjct: 311 GGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAADAAYAPTVERIIKAIEYVMRY 369
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 181/300 (60%), Gaps = 6/300 (2%)
Query: 29 EDVGF-GGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87
EDVG GGVFR + GLQ ++G+ RVF+TPL+E GI G IGLA+ G + EIQF +++
Sbjct: 29 EDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVY 88
Query: 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVI 147
D I + A+ RYR+G ++ +TIR+P H HS S E A PG+KVVI
Sbjct: 89 EVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVI 147
Query: 148 PRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTL 207
P PY AKGLL+S I+D DP IF E LYR+ ++VPE Y +P+ KADI G D+T+
Sbjct: 148 PSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITI 207
Query: 208 IGWGTQVH-VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPL 266
I +G VH L+ A L KE G+S EV+DL ++ P D ET+ S KTGR I+ EA
Sbjct: 208 IAYGAMVHESLKAAAELEKE--GISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQR 265
Query: 267 TSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHI-FEPFYIPDKWRCLEAVKQITRY 325
+G A + A I ++ LSLEAP+ RV DT +P E ++P+ +E K++ +
Sbjct: 266 QAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVWLPNFKDVIETAKKVMNF 325
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 181/300 (60%), Gaps = 6/300 (2%)
Query: 29 EDVGF-GGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87
EDVG GGVFR + GLQ ++G+ RVF+TPL+E GI G IGLA+ G + EIQF +++
Sbjct: 28 EDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVY 87
Query: 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVI 147
D I + A+ RYR+G ++ +TIR+P H HS S E A PG+KVVI
Sbjct: 88 EVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVI 146
Query: 148 PRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTL 207
P PY AKGLL+S I+D DP IF E LYR+ ++VPE Y +P+ KADI G D+T+
Sbjct: 147 PSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITI 206
Query: 208 IGWGTQVH-VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPL 266
I +G VH L+ A L KE G+S EV+DL ++ P D ET+ S KTGR I+ EA
Sbjct: 207 IAYGAMVHESLKAAAELEKE--GISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQR 264
Query: 267 TSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHI-FEPFYIPDKWRCLEAVKQITRY 325
+G A + A I ++ LSLEAP+ RV DT +P E ++P+ +E K++ +
Sbjct: 265 QAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVWLPNFKDVIETAKKVMNF 324
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 153/296 (51%), Gaps = 10/296 (3%)
Query: 33 FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQ 92
+ G ++ S GL +KYG R+ +TP+SE G G +G A++G I E ++ A DQ
Sbjct: 45 YDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 104
Query: 93 IVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPY 152
++N AAK Y SG + R P A A HSQ A++ H PG+KVV P
Sbjct: 105 VINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSE 163
Query: 153 KAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILVAGTDVTLIG 209
AKGL+ S I+D +P + E +++Y E PE + +P+ KA I GT +T++
Sbjct: 164 DAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVS 223
Query: 210 WGTQV-HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
V H L A L+KE GV CEVI++ +I P D ET+ S KT ++
Sbjct: 224 HSRPVGHCLEAAAVLSKE--GVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQF 281
Query: 269 GFGAELAASIQD-KCFLSLEAPIRRVTGYDTPFPH--IFEPFYIPDKWRCLEAVKQ 321
G GAE+ A I + F L+AP RVTG D P P+ I E IP + A+K+
Sbjct: 282 GVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 337
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 153/296 (51%), Gaps = 10/296 (3%)
Query: 33 FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQ 92
+ G ++ S GL +KYG R+ +TP+SE G G +G A++G I E ++ A DQ
Sbjct: 33 YDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 92
Query: 93 IVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPY 152
++N AAK Y SG + R P A A HSQ A++ H PG+KVV P
Sbjct: 93 VINSAAKTYYMSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSE 151
Query: 153 KAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILVAGTDVTLIG 209
AKGL+ S I+D +P + E +++Y E PE + +P+ KA I GT +T++
Sbjct: 152 DAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVS 211
Query: 210 WGTQV-HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
V H L A L+KE GV CEVI++ +I P D ET+ S KT ++
Sbjct: 212 HSRPVGHCLEAAAVLSKE--GVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQF 269
Query: 269 GFGAELAASIQD-KCFLSLEAPIRRVTGYDTPFPH--IFEPFYIPDKWRCLEAVKQ 321
G GAE+ A I + F L+AP RVTG D P P+ I E IP + A+K+
Sbjct: 270 GVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 325
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 150/296 (50%), Gaps = 10/296 (3%)
Query: 33 FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQ 92
+ G ++ S GL +KYG R+ +TP+SE G G +G A +G I E ++ A DQ
Sbjct: 45 YDGAYKVSRGLWKKYGDKRIIDTPISEXGFAGIAVGAAXAGLRPICEFXTFNFSXQAIDQ 104
Query: 93 IVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPY 152
++N AAK Y SG + R P A A HSQ A++ H PG+KVV P
Sbjct: 105 VINSAAKTYYXSGG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSE 163
Query: 153 KAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILVAGTDVTLIG 209
AKGL+ S I+D +P + E ++ Y E PE + +P+ KA I GT +T++
Sbjct: 164 DAKGLIKSAIRDNNPVVVLENELXYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVS 223
Query: 210 WGTQV-HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
V H L A L+KE GV CEVI+ +I P D ET+ S KT ++
Sbjct: 224 HSRPVGHCLEAAAVLSKE--GVECEVINXRTIRPXDXETIEASVXKTNHLVTVEGGWPQF 281
Query: 269 GFGAELAASIQD-KCFLSLEAPIRRVTGYDTPFPH--IFEPFYIPDKWRCLEAVKQ 321
G GAE+ A I + F L+AP RVTG D P P+ I E IP + A+K+
Sbjct: 282 GVGAEICARIXEGPAFNFLDAPAVRVTGADVPXPYAKILEDNSIPQVKDIIFAIKK 337
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 19/227 (8%)
Query: 57 LSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIR 116
++EQ +V +G A T FA + AFDQI A N CG
Sbjct: 362 IAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAA----ISESNINLCG----- 412
Query: 117 APC-MAVGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPK 174
+ C +++G G + A F P V P + + K C F
Sbjct: 413 SHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGIC-FIRTS 471
Query: 175 VLYRAAVEDVPEDYYELPLDKADILVAGTD--VTLIGWGTQVHVLREVAGLAKEQLGVSC 232
A + + ED+ + +A +++ D VT+IG G +H A L K++ ++
Sbjct: 472 RPENAIIYNNNEDFQ---VGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKE-KINI 527
Query: 233 EVIDLVSILPWDRETVFQSARKT-GRVIIAHEAPLTSGFGAELAASI 278
V+D +I P DR+ + SAR T GR++ + G G +++++
Sbjct: 528 RVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAV 574
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 19/227 (8%)
Query: 57 LSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIR 116
++EQ +V +G A T FA + AFDQI A N CG
Sbjct: 360 IAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAA----ISESNINLCG----- 410
Query: 117 APC-MAVGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPK 174
+ C +++G G + A F P V P + + K C F
Sbjct: 411 SHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTKGIC-FIRTS 469
Query: 175 VLYRAAVEDVPEDYYELPLDKADILVAGTD--VTLIGWGTQVHVLREVAGLAKEQLGVSC 232
A + + ED+ + +A +++ D VT+IG G +H A L K++ ++
Sbjct: 470 RPENAIIYNNNEDFQ---VGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKE-KINI 525
Query: 233 EVIDLVSILPWDRETVFQSARKT-GRVIIAHEAPLTSGFGAELAASI 278
V+D +I P DR+ + SAR T GR++ + G G +++++
Sbjct: 526 RVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAV 572
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 34/162 (20%)
Query: 48 GKHRVFNTPLSEQGIVGFGIGLAVSGATAIA--EIQFADYIFPAFDQIVNEAAKYRYRSG 105
GK V+N+ LSE VGF G +V A+ E QF D++ A I++E + S
Sbjct: 582 GKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGA-QSIIDE-----FISS 635
Query: 106 NQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPG-------------IKVVIPRGPY 152
+ G L+ + GH Q P+ HT G + + +P P
Sbjct: 636 GEAKWGQLSDVVLLLPHGH----EGQGPD----HTSGRIERFLQLWAEGSMTIAMPSTPA 687
Query: 153 KAKGLLLSCIKD--KDPCIFFEPKVLYR--AAVEDVPEDYYE 190
LL KD + P I F PK + R AAV D+ D+ E
Sbjct: 688 NYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDI-RDFTE 728
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 34/162 (20%)
Query: 48 GKHRVFNTPLSEQGIVGFGIGLAVSGATAIA--EIQFADYIFPAFDQIVNEAAKYRYRSG 105
GK V+N+ LSE VGF G +V A+ E QF D++ A I++E + S
Sbjct: 827 GKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGA-QSIIDE-----FISS 880
Query: 106 NQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPG-------------IKVVIPRGPY 152
+ G L+ + GH Q P+ HT G + + +P P
Sbjct: 881 GEAKWGQLSDVVLLLPHGH----EGQGPD----HTSGRIERFLQLWAEGSMTIAMPSTPA 932
Query: 153 KAKGLLLSCIKD--KDPCIFFEPKVLYR--AAVEDVPEDYYE 190
LL KD + P I F PK + R AAV D+ D+ E
Sbjct: 933 NYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDI-RDFTE 973
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 24/253 (9%)
Query: 50 HRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFS 109
HR + ++E+ V G+A+ G + I ++ ++ A+DQ++++ A N
Sbjct: 364 HRYLDVGIAEEVAVTTAAGMALQGMRPVVAI-YSTFLQRAYDQVLHDVAIEHL---NVTF 419
Query: 110 CGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCI 169
C I + GA ++ ++ PG+++ +P+ + +G+L P
Sbjct: 420 C----IDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGPFA 475
Query: 170 FFEPKVLYRAAVEDVPEDYY-ELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQL 228
P R VP + +L + + L G DV ++ G + + A A E L
Sbjct: 476 IRYP----RGNTAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKAL----DYALKAAEDL 527
Query: 229 -GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLE 287
GV V++ + P D E + + + +I + + GFG + ++
Sbjct: 528 PGVG--VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---- 581
Query: 288 APIRRVTGYDTPF 300
P RV G F
Sbjct: 582 HPTVRVLGIPDEF 594
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 RVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAA 98
R F+ ++EQ V F GLA+ G I I ++ ++ A+DQ++++ A
Sbjct: 362 RYFDVAIAEQHAVTFAAGLAIGGYKPIVAI-YSTFLQRAYDQVLHDVA 408
>pdb|3D02|A Chain A, Crystal Structure Of Periplasmic Sugar-Binding Protein
(Yp_001338366.1) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 1.30 A Resolution
Length = 303
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 235 IDLVSILPWDR---ETVFQSARKTGRVIIAHEAP 265
+D ++I+P D E VF+ AR G V++ +E+P
Sbjct: 62 VDAITIVPNDANVLEPVFKKARDAGIVVLTNESP 95
>pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermotoga Maritima
Reveals Fatty Acid Binding Function
Length = 313
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 234 VIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAEL 274
V++L++ L E V + G+VI H P T GFG E+
Sbjct: 268 VVELLNTLRKSYEVVDEIISPXGKVITTHVGPGTVGFGIEV 308
>pdb|1VPV|A Chain A, Crystal Structure Of A Degv Lipid Binding Protein (Tm1468)
From Thermotoga Maritima At 2.45 A Resolution
pdb|1VPV|B Chain B, Crystal Structure Of A Degv Lipid Binding Protein (Tm1468)
From Thermotoga Maritima At 2.45 A Resolution
Length = 300
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 234 VIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAEL 274
V++L++ L E V + G+VI H P T GFG E+
Sbjct: 255 VVELLNTLRKSYEVVDEIISPXGKVITTHVGPGTVGFGIEV 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,540,496
Number of Sequences: 62578
Number of extensions: 396992
Number of successful extensions: 883
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 21
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)