Query psy8699
Match_columns 325
No_of_seqs 127 out of 1452
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 16:58:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 2.4E-72 5.2E-77 504.1 30.0 316 8-325 2-324 (324)
2 COG3958 Transketolase, C-termi 100.0 3.4E-69 7.4E-74 480.6 28.2 292 8-323 11-312 (312)
3 PLN02683 pyruvate dehydrogenas 100.0 7E-65 1.5E-69 481.5 35.6 316 6-324 25-351 (356)
4 PRK11892 pyruvate dehydrogenas 100.0 4.7E-65 1E-69 495.6 34.0 311 10-323 148-462 (464)
5 PRK09212 pyruvate dehydrogenas 100.0 1.3E-64 2.9E-69 475.8 34.8 311 9-324 9-324 (327)
6 CHL00144 odpB pyruvate dehydro 100.0 1.7E-64 3.7E-69 474.5 34.5 309 9-324 9-324 (327)
7 PTZ00182 3-methyl-2-oxobutanat 100.0 1.7E-64 3.7E-69 478.8 34.3 312 8-323 35-355 (355)
8 PLN02225 1-deoxy-D-xylulose-5- 100.0 1E-60 2.2E-65 478.9 33.3 297 9-323 386-690 (701)
9 KOG0524|consensus 100.0 6.2E-60 1.4E-64 414.5 24.2 316 5-323 32-358 (359)
10 KOG0525|consensus 100.0 6.7E-60 1.4E-64 409.0 19.8 321 5-325 38-362 (362)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 7.2E-58 1.6E-62 461.9 33.0 293 9-323 315-616 (617)
12 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.6E-57 3.6E-62 439.8 30.5 295 9-324 321-623 (627)
13 PLN02582 1-deoxy-D-xylulose-5- 100.0 3.5E-57 7.6E-62 456.3 33.2 296 9-323 361-666 (677)
14 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.4E-56 3E-61 454.0 33.2 298 9-325 324-629 (641)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 6.6E-56 1.4E-60 445.3 32.0 291 10-324 284-581 (581)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 4.6E-54 9.9E-59 433.3 31.4 287 9-323 284-580 (580)
17 PLN02234 1-deoxy-D-xylulose-5- 100.0 9.7E-54 2.1E-58 428.0 30.5 258 9-283 362-623 (641)
18 PRK12753 transketolase; Review 100.0 2.1E-47 4.6E-52 387.9 26.7 283 9-323 360-663 (663)
19 TIGR00232 tktlase_bact transke 100.0 1.3E-47 2.8E-52 389.6 24.4 280 9-323 354-653 (653)
20 PRK05899 transketolase; Review 100.0 1.6E-47 3.4E-52 389.0 22.0 280 8-323 323-624 (624)
21 KOG0523|consensus 100.0 1.4E-47 3E-52 368.9 20.3 294 5-325 321-627 (632)
22 PLN02790 transketolase 100.0 2.5E-46 5.5E-51 380.2 27.3 285 8-323 348-654 (654)
23 PTZ00089 transketolase; Provis 100.0 1.2E-46 2.7E-51 382.9 24.0 285 7-324 358-659 (661)
24 PRK12754 transketolase; Review 100.0 2.2E-46 4.9E-51 378.5 22.4 289 8-323 359-663 (663)
25 TIGR03186 AKGDH_not_PDH alpha- 100.0 7.8E-44 1.7E-48 364.2 27.1 297 3-323 485-858 (889)
26 PRK09405 aceE pyruvate dehydro 100.0 1.2E-42 2.6E-47 355.6 29.0 299 2-324 489-862 (891)
27 PRK13012 2-oxoacid dehydrogena 100.0 7.3E-40 1.6E-44 336.3 25.9 283 9-324 508-867 (896)
28 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 6.3E-39 1.4E-43 273.7 17.0 164 9-174 2-167 (167)
29 COG0021 TktA Transketolase [Ca 100.0 9.2E-38 2E-42 304.3 21.3 297 4-324 354-663 (663)
30 cd07033 TPP_PYR_DXS_TK_like Py 100.0 6.3E-36 1.4E-40 253.4 17.1 152 9-174 2-156 (156)
31 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.8E-34 4E-39 297.0 26.8 267 5-281 583-891 (929)
32 PRK09404 sucA 2-oxoglutarate d 100.0 1.2E-34 2.6E-39 299.6 25.4 266 5-281 581-885 (924)
33 PF02779 Transket_pyr: Transke 100.0 5.4E-35 1.2E-39 252.9 13.9 165 6-179 1-177 (178)
34 smart00861 Transket_pyr Transk 100.0 6.5E-29 1.4E-33 212.9 14.2 152 8-174 4-166 (168)
35 PRK07119 2-ketoisovalerate fer 99.9 2E-24 4.3E-29 205.2 27.8 287 8-324 7-350 (352)
36 PRK08659 2-oxoglutarate ferred 99.9 1.4E-23 3.1E-28 200.8 27.8 283 8-322 7-375 (376)
37 PRK09627 oorA 2-oxoglutarate-a 99.9 1.8E-23 3.8E-28 199.7 26.1 281 8-322 6-375 (375)
38 TIGR03336 IOR_alpha indolepyru 99.9 3.8E-23 8.2E-28 209.5 27.8 285 8-322 5-335 (595)
39 PRK08366 vorA 2-ketoisovalerat 99.9 4.8E-21 1E-25 183.8 27.0 248 8-271 6-327 (390)
40 PRK09622 porA pyruvate flavodo 99.9 1.3E-20 2.8E-25 182.4 30.0 291 8-324 13-382 (407)
41 TIGR03710 OAFO_sf 2-oxoacid:ac 99.9 5E-21 1.1E-25 192.3 26.0 256 8-278 196-537 (562)
42 PF02780 Transketolase_C: Tran 99.9 4.2E-23 9.2E-28 168.2 2.4 119 194-315 1-124 (124)
43 PRK08367 porA pyruvate ferredo 99.9 4.1E-19 8.9E-24 170.8 30.2 287 8-323 7-373 (394)
44 PRK05261 putative phosphoketol 99.8 1.4E-18 3.1E-23 177.0 20.2 248 9-279 395-697 (785)
45 COG4231 Indolepyruvate ferredo 99.8 1.9E-17 4.1E-22 162.4 25.0 244 50-323 58-353 (640)
46 TIGR00759 aceE pyruvate dehydr 99.7 1.1E-15 2.3E-20 156.3 23.4 293 2-323 483-855 (885)
47 COG0674 PorA Pyruvate:ferredox 99.7 3.2E-14 6.9E-19 135.8 26.8 250 9-273 7-327 (365)
48 TIGR02176 pyruv_ox_red pyruvat 99.7 6.6E-14 1.4E-18 150.5 29.6 260 8-280 4-346 (1165)
49 PRK13030 2-oxoacid ferredoxin 99.6 9E-14 1.9E-18 147.6 26.4 252 51-323 75-394 (1159)
50 PRK09193 indolepyruvate ferred 99.6 3.7E-13 8E-18 142.7 26.4 249 51-323 83-402 (1165)
51 PRK13029 2-oxoacid ferredoxin 99.5 1.2E-12 2.5E-17 138.7 24.7 253 51-323 86-416 (1186)
52 COG2609 AceE Pyruvate dehydrog 99.5 6E-12 1.3E-16 124.4 20.8 290 3-323 487-857 (887)
53 PRK12270 kgd alpha-ketoglutara 99.3 9.2E-11 2E-15 120.3 20.1 272 9-294 890-1199(1228)
54 cd06586 TPP_enzyme_PYR Pyrimid 99.3 2.3E-11 5E-16 102.0 12.6 119 44-173 30-153 (154)
55 KOG0450|consensus 99.2 2.3E-10 4.9E-15 113.0 16.5 262 9-279 652-970 (1017)
56 KOG0451|consensus 99.2 2.3E-10 4.9E-15 110.6 12.1 258 10-278 568-873 (913)
57 PF01855 POR_N: Pyruvate flavo 99.1 7.8E-10 1.7E-14 99.3 10.1 145 19-177 5-157 (230)
58 COG0567 SucA 2-oxoglutarate de 98.9 6.8E-09 1.5E-13 106.5 11.7 261 9-280 569-865 (906)
59 COG3957 Phosphoketolase [Carbo 98.7 1.7E-07 3.6E-12 93.7 14.0 221 8-240 405-663 (793)
60 cd07034 TPP_PYR_PFOR_IOR-alpha 97.6 0.0039 8.5E-08 52.5 15.1 147 11-173 2-159 (160)
61 cd07035 TPP_PYR_POX_like Pyrim 97.2 0.014 2.9E-07 48.8 13.6 143 13-173 2-154 (155)
62 PF03894 XFP: D-xylulose 5-pho 97.0 0.028 6.1E-07 47.9 13.5 149 10-163 4-178 (179)
63 PRK08199 thiamine pyrophosphat 96.7 0.38 8.3E-06 48.9 21.6 244 1-263 1-279 (557)
64 PRK07525 sulfoacetaldehyde ace 96.6 0.2 4.3E-06 51.3 18.9 237 8-264 6-276 (588)
65 PF02776 TPP_enzyme_N: Thiamin 96.5 0.042 9.1E-07 46.9 11.3 155 9-178 2-165 (172)
66 TIGR03457 sulphoacet_xsc sulfo 96.1 0.49 1.1E-05 48.4 18.6 238 8-264 2-272 (579)
67 PRK06466 acetolactate synthase 96.0 0.93 2E-05 46.3 19.9 235 8-263 4-281 (574)
68 PRK09259 putative oxalyl-CoA d 96.0 1 2.2E-05 45.9 19.9 246 1-264 3-282 (569)
69 PRK08322 acetolactate synthase 95.9 0.68 1.5E-05 46.9 18.2 207 9-232 2-227 (547)
70 PRK08617 acetolactate synthase 95.9 1.1 2.3E-05 45.6 19.5 210 7-232 4-232 (552)
71 PRK07092 benzoylformate decarb 95.9 1.1 2.4E-05 45.2 19.5 237 7-263 11-281 (530)
72 TIGR03845 sulfopyru_alph sulfo 95.8 0.33 7.1E-06 41.0 13.2 144 12-175 2-155 (157)
73 PRK06048 acetolactate synthase 95.7 2.6 5.7E-05 42.8 21.6 242 5-264 5-283 (561)
74 PRK07710 acetolactate synthase 95.7 0.79 1.7E-05 46.7 17.7 154 6-176 14-176 (571)
75 PRK08978 acetolactate synthase 95.6 3 6.4E-05 42.3 21.6 237 9-264 2-272 (548)
76 PRK12474 hypothetical protein; 95.6 3 6.6E-05 41.9 23.4 242 5-264 2-276 (518)
77 PRK07789 acetolactate synthase 95.5 2.5 5.3E-05 43.6 20.8 238 7-264 30-307 (612)
78 PRK07282 acetolactate synthase 95.5 0.89 1.9E-05 46.4 17.4 243 5-264 7-286 (566)
79 TIGR02418 acolac_catab acetola 95.5 0.35 7.5E-06 49.0 14.2 171 51-232 38-226 (539)
80 TIGR00118 acolac_lg acetolacta 95.5 0.9 2E-05 46.2 17.3 237 10-264 3-277 (558)
81 TIGR03297 Ppyr-DeCO2ase phosph 95.4 0.087 1.9E-06 50.6 9.2 123 46-177 23-155 (361)
82 PRK06725 acetolactate synthase 95.4 1.2 2.5E-05 45.6 17.9 240 5-263 12-289 (570)
83 PRK08527 acetolactate synthase 95.3 2.8 6E-05 42.7 20.1 237 8-264 3-279 (563)
84 cd07039 TPP_PYR_POX Pyrimidine 95.3 0.34 7.4E-06 41.1 11.4 113 51-175 40-159 (164)
85 PRK06456 acetolactate synthase 95.1 1.8 3.9E-05 44.1 18.1 210 9-232 3-238 (572)
86 PRK06965 acetolactate synthase 95.1 1.7 3.6E-05 44.6 17.8 244 5-264 18-297 (587)
87 PRK07586 hypothetical protein; 95.1 1.9 4.1E-05 43.3 18.0 201 51-263 41-271 (514)
88 PRK08155 acetolactate synthase 95.0 1.7 3.8E-05 44.2 17.6 154 8-177 13-175 (564)
89 PRK05858 hypothetical protein; 94.9 2 4.2E-05 43.6 17.6 240 7-263 4-271 (542)
90 PRK07979 acetolactate synthase 94.8 2.1 4.5E-05 43.8 17.6 237 8-263 4-281 (574)
91 PRK06457 pyruvate dehydrogenas 94.5 1.1 2.5E-05 45.4 14.9 151 9-178 3-163 (549)
92 PRK07524 hypothetical protein; 94.5 1.1 2.4E-05 45.2 14.8 151 9-177 3-166 (535)
93 PRK08266 hypothetical protein; 94.5 4.2 9E-05 41.1 18.8 157 8-178 4-171 (542)
94 PRK08979 acetolactate synthase 94.1 3.3 7.2E-05 42.2 17.3 155 8-177 4-166 (572)
95 PRK07418 acetolactate synthase 94.0 4.9 0.00011 41.4 18.3 245 6-264 17-300 (616)
96 cd07037 TPP_PYR_MenD Pyrimidin 94.0 0.59 1.3E-05 39.6 9.7 111 51-173 37-161 (162)
97 PRK08611 pyruvate oxidase; Pro 93.9 2 4.4E-05 43.9 15.3 157 7-178 3-167 (576)
98 PRK11269 glyoxylate carboligas 93.7 4.9 0.00011 41.2 17.7 208 8-232 4-234 (591)
99 TIGR01504 glyox_carbo_lig glyo 93.4 2.5 5.5E-05 43.3 14.9 240 8-264 3-279 (588)
100 PRK09107 acetolactate synthase 93.3 1.8 3.9E-05 44.4 13.7 156 5-177 8-173 (595)
101 COG0028 IlvB Thiamine pyrophos 93.1 2 4.4E-05 43.7 13.5 205 8-231 2-230 (550)
102 PRK06112 acetolactate synthase 92.9 1.1 2.3E-05 45.8 11.3 209 6-232 12-244 (578)
103 PRK07064 hypothetical protein; 92.8 4.2 9.1E-05 41.1 15.4 154 8-177 3-168 (544)
104 cd02001 TPP_ComE_PpyrDC Thiami 92.5 3.3 7.2E-05 34.7 12.0 112 49-170 35-150 (157)
105 cd02014 TPP_POX Thiamine pyrop 92.3 3.3 7E-05 35.4 12.0 114 46-170 39-168 (178)
106 PRK06882 acetolactate synthase 92.3 4.9 0.00011 40.9 15.2 151 8-177 4-166 (574)
107 TIGR02720 pyruv_oxi_spxB pyruv 92.2 9.8 0.00021 38.9 17.3 115 51-177 40-161 (575)
108 PRK08327 acetolactate synthase 92.2 8.7 0.00019 39.2 16.9 210 8-232 7-251 (569)
109 CHL00099 ilvB acetohydroxyacid 92.1 4.4 9.6E-05 41.5 14.7 243 8-264 10-293 (585)
110 PLN02470 acetolactate synthase 92.1 3.8 8.2E-05 42.0 14.2 152 6-176 11-174 (585)
111 PRK09124 pyruvate dehydrogenas 91.4 6.6 0.00014 40.0 15.0 153 8-177 3-164 (574)
112 cd02013 TPP_Xsc_like Thiamine 91.0 2.2 4.9E-05 37.1 9.8 113 49-171 43-175 (196)
113 PF09363 XFP_C: XFP C-terminal 90.3 1.6 3.4E-05 38.3 7.8 74 202-280 34-119 (203)
114 COG4032 Predicted thiamine-pyr 90.0 0.87 1.9E-05 37.5 5.6 148 7-173 3-162 (172)
115 PRK06546 pyruvate dehydrogenas 89.9 15 0.00033 37.5 16.1 154 9-178 4-165 (578)
116 PRK08273 thiamine pyrophosphat 89.9 5.8 0.00013 40.7 13.1 155 8-178 3-167 (597)
117 cd07038 TPP_PYR_PDC_IPDC_like 89.6 6.5 0.00014 33.1 11.1 111 51-173 37-161 (162)
118 cd02010 TPP_ALS Thiamine pyrop 89.5 8.2 0.00018 32.9 11.9 113 49-171 38-166 (177)
119 PRK06276 acetolactate synthase 89.4 3.5 7.5E-05 42.2 11.0 151 9-177 2-162 (586)
120 cd03376 TPP_PFOR_porB_like Thi 89.3 13 0.00028 33.5 13.4 36 135-170 158-195 (235)
121 cd02004 TPP_BZL_OCoD_HPCL Thia 89.2 2.8 6E-05 35.5 8.6 113 49-170 38-167 (172)
122 PLN02573 pyruvate decarboxylas 89.2 7 0.00015 40.0 13.0 205 8-231 16-254 (578)
123 TIGR03254 oxalate_oxc oxalyl-C 88.7 4.4 9.5E-05 41.2 11.1 235 9-263 4-274 (554)
124 PRK07449 2-succinyl-5-enolpyru 86.9 8.3 0.00018 39.2 11.8 153 8-176 9-175 (568)
125 PRK06154 hypothetical protein; 86.0 20 0.00044 36.5 14.1 205 7-231 19-244 (565)
126 KOG1185|consensus 85.7 32 0.00069 34.4 14.3 119 45-175 48-173 (571)
127 TIGR03297 Ppyr-DeCO2ase phosph 84.6 35 0.00075 32.8 14.2 148 8-172 172-333 (361)
128 TIGR03394 indol_phenyl_DC indo 84.3 11 0.00024 38.1 11.3 117 51-178 40-168 (535)
129 cd02006 TPP_Gcl Thiamine pyrop 84.3 6 0.00013 34.5 8.2 112 49-170 47-189 (202)
130 cd02009 TPP_SHCHC_synthase Thi 84.2 8.2 0.00018 32.8 8.9 113 49-170 41-170 (175)
131 TIGR00173 menD 2-succinyl-5-en 84.0 18 0.00039 35.5 12.3 150 11-176 3-167 (432)
132 cd02015 TPP_AHAS Thiamine pyro 82.5 13 0.00028 31.8 9.5 113 49-171 40-170 (186)
133 TIGR02177 PorB_KorB 2-oxoacid: 82.5 25 0.00054 32.7 11.8 35 136-170 147-181 (287)
134 cd03027 GRX_DEP Glutaredoxin ( 82.1 3.7 8E-05 29.3 5.0 66 204-273 2-68 (73)
135 PRK11864 2-ketoisovalerate fer 81.5 14 0.00031 34.6 9.8 33 138-170 170-202 (300)
136 PRK09628 oorB 2-oxoglutarate-a 80.6 29 0.00062 32.1 11.5 25 146-170 172-196 (277)
137 PF03102 NeuB: NeuB family; I 80.2 38 0.00082 30.7 11.9 108 204-321 114-228 (241)
138 PRK06457 pyruvate dehydrogenas 79.8 26 0.00056 35.5 12.0 112 49-170 386-514 (549)
139 cd03371 TPP_PpyrDC Thiamine py 79.8 39 0.00085 29.1 12.0 114 49-172 41-160 (188)
140 cd02012 TPP_TK Thiamine pyroph 79.0 23 0.00049 32.1 10.3 101 62-173 110-225 (255)
141 cd03028 GRX_PICOT_like Glutare 78.8 5.8 0.00013 29.8 5.3 66 202-274 7-81 (90)
142 cd03033 ArsC_15kD Arsenate Red 78.7 5.9 0.00013 31.4 5.5 49 204-255 1-49 (113)
143 cd03375 TPP_OGFOR Thiamine pyr 77.9 30 0.00065 29.9 10.3 25 146-170 155-179 (193)
144 PRK11866 2-oxoacid ferredoxin 77.7 21 0.00045 33.1 9.6 102 61-170 63-187 (279)
145 PRK08155 acetolactate synthase 77.5 23 0.00049 36.1 10.8 113 49-171 409-539 (564)
146 cd02002 TPP_BFDC Thiamine pyro 77.1 43 0.00094 28.1 11.0 35 135-170 140-174 (178)
147 cd00568 TPP_enzymes Thiamine p 76.9 16 0.00034 30.3 8.1 36 134-170 129-164 (168)
148 COG3961 Pyruvate decarboxylase 76.9 3.6 7.8E-05 41.1 4.5 156 9-180 5-175 (557)
149 COG0075 Serine-pyruvate aminot 76.8 12 0.00026 36.3 8.0 81 197-281 75-160 (383)
150 TIGR00365 monothiol glutaredox 76.7 7.8 0.00017 29.7 5.6 71 202-275 11-86 (97)
151 cd02003 TPP_IolD Thiamine pyro 75.8 35 0.00076 29.7 10.3 36 135-171 145-180 (205)
152 PRK11865 pyruvate ferredoxin o 75.7 42 0.00091 31.4 11.1 33 138-170 174-206 (299)
153 PLN02980 2-oxoglutarate decarb 75.7 37 0.00081 39.4 12.8 148 9-174 302-466 (1655)
154 cd01481 vWA_collagen_alpha3-VI 75.6 8.6 0.00019 32.4 6.1 55 205-263 110-164 (165)
155 TIGR00118 acolac_lg acetolacta 74.2 33 0.00072 34.8 11.0 111 49-170 402-531 (558)
156 cd03029 GRX_hybridPRX5 Glutare 74.0 18 0.00039 25.5 6.6 68 204-277 2-70 (72)
157 cd00006 PTS_IIA_man PTS_IIA, P 73.6 43 0.00094 26.5 9.6 110 204-322 2-119 (122)
158 PF03358 FMN_red: NADPH-depend 73.5 11 0.00024 30.8 6.2 67 211-279 14-94 (152)
159 PRK08617 acetolactate synthase 73.3 39 0.00084 34.3 11.2 111 49-171 404-532 (552)
160 PRK08322 acetolactate synthase 72.6 41 0.00089 34.0 11.2 114 49-171 396-524 (547)
161 cd02008 TPP_IOR_alpha Thiamine 72.6 31 0.00067 29.3 8.9 36 135-170 135-172 (178)
162 TIGR03254 oxalate_oxc oxalyl-C 72.5 35 0.00077 34.6 10.7 112 49-170 407-533 (554)
163 TIGR02190 GlrX-dom Glutaredoxi 72.3 21 0.00045 25.9 6.8 72 201-278 6-78 (79)
164 TIGR03393 indolpyr_decarb indo 72.3 70 0.0015 32.3 12.8 153 9-179 2-170 (539)
165 PRK05858 hypothetical protein; 71.5 23 0.00051 35.8 9.1 113 49-171 397-526 (542)
166 PRK06048 acetolactate synthase 71.2 45 0.00097 33.9 11.1 113 49-171 404-534 (561)
167 PRK06163 hypothetical protein; 70.8 73 0.0016 27.9 14.3 151 4-171 9-169 (202)
168 smart00226 LMWPc Low molecular 70.5 7.9 0.00017 31.4 4.5 87 218-324 44-139 (140)
169 PF03960 ArsC: ArsC family; I 69.7 10 0.00022 29.6 4.8 42 213-256 5-46 (110)
170 TIGR03846 sulfopy_beta sulfopy 69.1 47 0.001 28.4 9.3 112 49-172 35-153 (181)
171 PRK08978 acetolactate synthase 68.7 64 0.0014 32.6 11.6 113 49-171 391-521 (548)
172 cd03418 GRX_GRXb_1_3_like Glut 68.6 13 0.00028 26.3 4.9 65 205-273 2-68 (75)
173 PRK09259 putative oxalyl-CoA d 68.4 37 0.0008 34.6 9.8 113 49-171 414-542 (569)
174 cd02018 TPP_PFOR Thiamine pyro 68.2 91 0.002 28.0 13.4 36 135-170 160-198 (237)
175 PRK10853 putative reductase; P 68.0 12 0.00026 29.8 5.0 42 212-255 8-49 (118)
176 PRK10026 arsenate reductase; P 67.7 16 0.00034 30.3 5.7 43 212-256 10-52 (141)
177 PRK05899 transketolase; Review 67.2 68 0.0015 33.2 11.6 38 135-173 207-246 (624)
178 TIGR00824 EIIA-man PTS system, 66.6 62 0.0014 25.5 9.1 105 204-317 3-114 (116)
179 PRK05778 2-oxoglutarate ferred 66.4 38 0.00081 31.8 8.6 101 61-170 74-198 (301)
180 COG1393 ArsC Arsenate reductas 66.4 20 0.00044 28.6 5.9 49 205-256 3-51 (117)
181 PRK11869 2-oxoacid ferredoxin 66.2 44 0.00095 31.0 8.9 102 61-170 64-188 (280)
182 cd02005 TPP_PDC_IPDC Thiamine 66.2 73 0.0016 27.2 9.9 114 49-170 40-169 (183)
183 COG2089 SpsE Sialic acid synth 65.9 90 0.0019 29.6 10.8 69 204-275 148-223 (347)
184 PRK09124 pyruvate dehydrogenas 65.3 86 0.0019 32.0 11.8 113 49-170 398-525 (574)
185 TIGR02189 GlrX-like_plant Glut 65.1 45 0.00099 25.5 7.6 66 203-273 8-78 (99)
186 PRK11867 2-oxoglutarate ferred 64.9 56 0.0012 30.3 9.5 102 61-170 73-197 (286)
187 COG4231 Indolepyruvate ferredo 64.1 16 0.00035 37.5 5.9 107 61-174 432-553 (640)
188 cd00860 ThrRS_anticodon ThrRS 63.9 41 0.00088 24.5 7.0 58 204-265 3-62 (91)
189 cd03034 ArsC_ArsC Arsenate Red 63.7 18 0.0004 28.4 5.2 43 212-256 7-49 (112)
190 KOG1184|consensus 63.5 12 0.00026 37.4 4.9 153 8-177 4-172 (561)
191 PRK10466 hybD hydrogenase 2 ma 63.4 36 0.00079 28.6 7.3 57 204-264 2-64 (164)
192 TIGR03336 IOR_alpha indolepyru 62.9 51 0.0011 33.9 9.6 105 61-173 407-528 (595)
193 cd03035 ArsC_Yffb Arsenate Red 62.8 20 0.00043 27.9 5.2 43 212-256 7-49 (105)
194 PRK06882 acetolactate synthase 62.5 65 0.0014 32.8 10.3 113 49-171 411-542 (574)
195 PF01565 FAD_binding_4: FAD bi 62.3 79 0.0017 25.2 9.2 76 144-221 3-81 (139)
196 cd00115 LMWPc Substituted upda 62.3 13 0.00027 30.3 4.2 87 218-324 48-141 (141)
197 PRK03767 NAD(P)H:quinone oxido 61.8 74 0.0016 27.5 9.2 69 210-281 12-95 (200)
198 TIGR03457 sulphoacet_xsc sulfo 61.3 1E+02 0.0022 31.5 11.4 111 49-171 420-553 (579)
199 TIGR00014 arsC arsenate reduct 61.1 22 0.00047 28.1 5.2 43 212-256 7-49 (114)
200 PRK06466 acetolactate synthase 60.9 80 0.0017 32.2 10.6 112 49-170 413-543 (574)
201 PF10740 DUF2529: Protein of u 60.8 23 0.00049 30.3 5.5 80 151-236 24-115 (172)
202 cd06062 H2MP_MemB-H2up Endopep 60.7 36 0.00079 28.0 6.7 56 205-264 1-62 (146)
203 TIGR01504 glyox_carbo_lig glyo 60.7 39 0.00084 34.7 8.3 113 49-171 408-551 (588)
204 PRK06112 acetolactate synthase 60.3 95 0.002 31.7 11.0 101 61-170 441-555 (578)
205 TIGR01616 nitro_assoc nitrogen 60.1 25 0.00053 28.5 5.4 42 212-255 9-50 (126)
206 PF00289 CPSase_L_chain: Carba 60.1 53 0.0011 25.8 7.2 30 204-237 4-33 (110)
207 PRK06276 acetolactate synthase 60.0 46 0.00099 34.1 8.7 111 49-170 409-538 (586)
208 PRK06546 pyruvate dehydrogenas 59.8 84 0.0018 32.1 10.6 111 49-170 398-525 (578)
209 PRK10638 glutaredoxin 3; Provi 59.6 23 0.00049 25.9 4.8 66 204-273 3-69 (83)
210 TIGR03569 NeuB_NnaB N-acetylne 59.6 1.2E+02 0.0027 28.7 10.9 71 204-277 134-213 (329)
211 PRK07586 hypothetical protein; 59.5 1.5E+02 0.0033 29.6 12.2 112 49-170 376-510 (514)
212 PRK11200 grxA glutaredoxin 1; 59.0 41 0.0009 24.5 6.2 71 205-280 3-81 (85)
213 PRK07092 benzoylformate decarb 59.0 1.3E+02 0.0028 30.3 11.7 112 49-170 398-525 (530)
214 COG0426 FpaA Uncharacterized f 58.8 22 0.00048 34.5 5.7 67 204-275 248-317 (388)
215 PF02662 FlpD: Methyl-viologen 58.7 45 0.00098 26.8 6.7 60 204-263 1-61 (124)
216 PLN02470 acetolactate synthase 58.5 98 0.0021 31.7 10.8 113 49-171 416-553 (585)
217 PRK06154 hypothetical protein; 57.7 1.5E+02 0.0033 30.1 12.0 114 49-171 421-551 (565)
218 KOG2862|consensus 57.6 67 0.0015 30.4 8.3 70 197-270 87-158 (385)
219 PRK07524 hypothetical protein; 57.6 80 0.0017 31.8 9.9 112 49-170 396-524 (535)
220 cd05008 SIS_GlmS_GlmD_1 SIS (S 57.4 54 0.0012 25.6 7.0 82 204-297 1-83 (126)
221 PRK06965 acetolactate synthase 57.0 84 0.0018 32.2 10.0 113 49-171 427-558 (587)
222 PRK07418 acetolactate synthase 55.6 1.6E+02 0.0036 30.2 11.9 150 8-171 387-555 (616)
223 PRK08266 hypothetical protein; 55.5 1E+02 0.0022 31.1 10.2 113 49-171 392-521 (542)
224 PRK08527 acetolactate synthase 55.3 89 0.0019 31.8 9.8 111 49-170 404-533 (563)
225 PRK12315 1-deoxy-D-xylulose-5- 55.0 61 0.0013 33.3 8.6 113 52-173 109-241 (581)
226 PRK12559 transcriptional regul 54.8 37 0.0008 27.6 5.7 42 212-255 8-49 (131)
227 cd02007 TPP_DXS Thiamine pyrop 54.6 1.4E+02 0.0031 25.8 10.7 28 146-173 161-188 (195)
228 cd03032 ArsC_Spx Arsenate Redu 54.3 35 0.00076 26.8 5.4 42 212-255 8-49 (115)
229 cd06063 H2MP_Cyano-H2up This g 54.1 43 0.00094 27.5 6.1 55 205-264 1-61 (146)
230 cd06070 H2MP_like-2 Putative [ 53.9 36 0.00079 27.8 5.6 51 207-264 2-56 (140)
231 cd03036 ArsC_like Arsenate Red 53.6 31 0.00068 27.0 4.9 42 212-255 7-48 (111)
232 PLN02790 transketolase 53.5 1.6E+02 0.0034 30.8 11.4 85 82-175 144-238 (654)
233 PRK10264 hydrogenase 1 maturat 53.4 62 0.0013 28.3 7.2 58 203-264 4-67 (195)
234 TIGR02690 resist_ArsH arsenica 53.4 80 0.0017 28.1 8.0 63 214-278 43-113 (219)
235 PRK07789 acetolactate synthase 53.2 96 0.0021 31.9 9.8 112 49-170 437-571 (612)
236 PRK08199 thiamine pyrophosphat 53.0 1.2E+02 0.0026 30.8 10.3 36 135-171 499-534 (557)
237 TIGR02418 acolac_catab acetola 52.5 1.2E+02 0.0027 30.5 10.3 112 49-170 398-525 (539)
238 COG1707 ACT domain-containing 51.8 50 0.0011 28.2 6.0 93 202-301 83-181 (218)
239 cd00859 HisRS_anticodon HisRS 51.3 64 0.0014 23.0 6.2 56 204-263 3-60 (91)
240 PRK07064 hypothetical protein; 51.1 85 0.0018 31.7 8.9 112 49-170 396-523 (544)
241 COG0680 HyaD Ni,Fe-hydrogenase 51.0 51 0.0011 27.8 6.1 57 203-264 2-65 (160)
242 COG3962 Acetolactate synthase 51.0 2E+02 0.0044 28.9 10.7 80 149-232 157-260 (617)
243 COG1504 Uncharacterized conser 50.9 16 0.00034 28.9 2.7 38 199-239 58-97 (121)
244 COG0655 WrbA Multimeric flavod 50.6 86 0.0019 27.3 7.8 69 210-280 13-100 (207)
245 TIGR02194 GlrX_NrdH Glutaredox 50.2 30 0.00065 24.4 4.1 57 212-271 7-64 (72)
246 cd00858 GlyRS_anticodon GlyRS 50.2 77 0.0017 25.0 6.8 57 203-264 27-87 (121)
247 cd00518 H2MP Hydrogenase speci 50.1 56 0.0012 26.5 6.2 54 207-264 2-60 (139)
248 COG0695 GrxC Glutaredoxin and 50.0 41 0.0009 24.6 4.8 60 205-266 3-64 (80)
249 PRK13344 spxA transcriptional 49.7 51 0.0011 26.8 5.7 42 212-255 8-49 (132)
250 cd03372 TPP_ComE Thiamine pyro 49.5 1.6E+02 0.0035 24.9 10.7 112 49-172 35-152 (179)
251 PRK06725 acetolactate synthase 49.2 1.6E+02 0.0034 30.1 10.5 112 49-171 412-541 (570)
252 PRK07710 acetolactate synthase 49.2 1.2E+02 0.0026 30.9 9.7 112 49-171 414-544 (571)
253 PRK07449 2-succinyl-5-enolpyru 49.2 79 0.0017 32.1 8.3 29 142-170 516-544 (568)
254 TIGR02720 pyruv_oxi_spxB pyruv 49.0 2.2E+02 0.0047 29.1 11.5 113 49-170 398-527 (575)
255 PRK08979 acetolactate synthase 48.7 1.5E+02 0.0032 30.3 10.2 112 49-170 411-541 (572)
256 PF12683 DUF3798: Protein of u 48.6 74 0.0016 29.3 7.0 142 11-166 76-224 (275)
257 COG1071 AcoA Pyruvate/2-oxoglu 48.5 83 0.0018 30.3 7.7 109 54-172 137-258 (358)
258 PRK07979 acetolactate synthase 48.5 2.2E+02 0.0048 29.0 11.5 112 49-170 411-543 (574)
259 cd01080 NAD_bind_m-THF_DH_Cycl 47.1 62 0.0014 27.5 6.1 52 201-261 43-94 (168)
260 PRK11269 glyoxylate carboligas 47.1 57 0.0012 33.4 7.0 113 49-170 409-551 (591)
261 PRK10824 glutaredoxin-4; Provi 47.0 49 0.0011 26.3 5.1 67 202-275 14-89 (115)
262 cd02977 ArsC_family Arsenate R 46.8 53 0.0011 25.1 5.2 43 212-256 7-49 (105)
263 PF03129 HGTP_anticodon: Antic 46.6 73 0.0016 23.5 5.9 57 204-264 1-62 (94)
264 PRK08611 pyruvate oxidase; Pro 46.5 1.5E+02 0.0032 30.3 9.8 113 49-171 398-526 (576)
265 PRK10126 tyrosine phosphatase; 45.2 37 0.0008 28.0 4.3 88 218-324 47-140 (147)
266 TIGR00072 hydrog_prot hydrogen 45.2 86 0.0019 25.6 6.6 54 207-264 2-61 (145)
267 PRK11544 hycI hydrogenase 3 ma 44.7 58 0.0013 27.2 5.5 57 204-264 2-64 (156)
268 TIGR02181 GRX_bact Glutaredoxi 44.6 43 0.00092 23.9 4.2 61 212-275 7-68 (79)
269 PF00456 Transketolase_N: Tran 44.4 1.1E+02 0.0023 29.2 7.8 91 75-176 145-244 (332)
270 cd00738 HGTP_anticodon HGTP an 44.3 99 0.0021 22.4 6.3 57 204-264 3-64 (94)
271 PF00258 Flavodoxin_1: Flavodo 44.3 46 0.00099 26.7 4.7 48 210-263 7-54 (143)
272 TIGR03393 indolpyr_decarb indo 43.9 2.7E+02 0.0058 28.1 11.2 110 49-170 394-522 (539)
273 PF02775 TPP_enzyme_C: Thiamin 43.1 61 0.0013 26.5 5.4 112 49-170 18-151 (153)
274 KOG4044|consensus 43.0 1.5E+02 0.0034 25.3 7.6 123 138-264 10-165 (201)
275 PRK08273 thiamine pyrophosphat 42.7 2.6E+02 0.0057 28.6 11.0 35 135-170 507-541 (597)
276 cd06068 H2MP_like-1 Putative [ 42.7 78 0.0017 25.9 5.9 54 207-264 2-61 (144)
277 PRK05444 1-deoxy-D-xylulose-5- 42.5 1.8E+02 0.0038 29.9 9.7 105 61-174 121-241 (580)
278 PRK12474 hypothetical protein; 41.9 2.7E+02 0.0059 27.9 10.8 112 49-170 380-514 (518)
279 PF03610 EIIA-man: PTS system 41.8 1.7E+02 0.0036 22.8 8.9 107 204-319 1-115 (116)
280 PRK06456 acetolactate synthase 41.5 2.1E+02 0.0045 29.1 10.0 112 49-170 411-540 (572)
281 PF14097 SpoVAE: Stage V sporu 41.2 2.3E+02 0.005 24.3 9.1 73 204-280 1-79 (180)
282 TIGR03249 KdgD 5-dehydro-4-deo 41.0 74 0.0016 29.5 6.2 35 229-264 130-164 (296)
283 PLN02409 serine--glyoxylate am 40.7 1E+02 0.0022 29.7 7.3 25 229-253 107-131 (401)
284 PTZ00089 transketolase; Provis 40.7 3.5E+02 0.0076 28.3 11.6 89 75-174 150-248 (661)
285 PF03853 YjeF_N: YjeF-related 40.5 1E+02 0.0022 26.0 6.4 51 205-256 29-81 (169)
286 PLN02275 transferase, transfer 40.1 2.1E+02 0.0047 27.0 9.4 107 202-323 261-371 (371)
287 TIGR03181 PDH_E1_alph_x pyruva 40.0 97 0.0021 29.5 6.9 32 140-172 208-243 (341)
288 PF11823 DUF3343: Protein of u 40.0 69 0.0015 22.9 4.6 55 212-282 9-63 (73)
289 PRK07525 sulfoacetaldehyde ace 39.9 2.5E+02 0.0055 28.7 10.4 113 49-171 425-558 (588)
290 PF04430 DUF498: Protein of un 39.9 24 0.00053 27.6 2.3 37 201-238 52-89 (110)
291 TIGR01617 arsC_related transcr 39.4 62 0.0013 25.4 4.7 44 211-256 6-49 (117)
292 PRK09107 acetolactate synthase 39.2 1.9E+02 0.004 29.8 9.2 114 49-172 420-551 (595)
293 TIGR00142 hycI hydrogenase mat 39.0 72 0.0016 26.2 5.2 53 206-263 2-62 (146)
294 cd01452 VWA_26S_proteasome_sub 38.7 1.4E+02 0.0029 25.9 7.0 58 205-264 111-175 (187)
295 CHL00099 ilvB acetohydroxyacid 38.5 2.9E+02 0.0063 28.2 10.5 113 49-171 420-551 (585)
296 COG2805 PilT Tfp pilus assembl 38.5 28 0.00061 32.8 2.8 24 6-29 183-206 (353)
297 PF07905 PucR: Purine cataboli 38.3 1.5E+02 0.0033 23.4 6.9 68 205-274 44-118 (123)
298 TIGR03566 FMN_reduc_MsuE FMN r 37.8 1.4E+02 0.0031 25.0 7.0 65 214-279 16-92 (174)
299 cd05009 SIS_GlmS_GlmD_2 SIS (S 37.6 1.5E+02 0.0033 23.6 7.0 58 201-262 12-69 (153)
300 cd05564 PTS_IIB_chitobiose_lic 37.6 1.8E+02 0.0039 22.0 8.2 89 208-320 6-95 (96)
301 TIGR03586 PseI pseudaminic aci 37.3 3.7E+02 0.008 25.5 11.2 71 204-277 135-212 (327)
302 PRK10329 glutaredoxin-like pro 36.7 1.6E+02 0.0034 21.5 6.2 61 204-271 2-65 (81)
303 cd05014 SIS_Kpsf KpsF-like pro 36.5 1.8E+02 0.0039 22.6 7.0 83 204-297 2-84 (128)
304 PHA03050 glutaredoxin; Provisi 36.1 1.8E+02 0.0039 22.6 6.7 70 202-275 12-88 (108)
305 PRK10569 NAD(P)H-dependent FMN 36.0 1.6E+02 0.0035 25.4 7.1 62 215-278 18-89 (191)
306 PRK11391 etp phosphotyrosine-p 35.9 76 0.0017 26.1 4.8 88 218-324 47-140 (144)
307 TIGR03567 FMN_reduc_SsuE FMN r 35.4 1.7E+02 0.0037 24.5 7.1 65 213-279 15-89 (171)
308 cd03412 CbiK_N Anaerobic cobal 35.2 1.4E+02 0.003 23.9 6.1 75 205-280 3-95 (127)
309 COG1171 IlvA Threonine dehydra 35.1 1.9E+02 0.0042 27.7 7.9 113 143-281 75-199 (347)
310 cd05125 Mth938_2P1-like Mth938 35.1 30 0.00066 27.5 2.2 37 200-237 52-89 (114)
311 cd03816 GT1_ALG1_like This fam 34.5 2.9E+02 0.0064 26.6 9.5 107 203-324 270-380 (415)
312 COG0062 Uncharacterized conser 33.8 1.1E+02 0.0023 27.1 5.6 46 205-251 53-98 (203)
313 PLN02573 pyruvate decarboxylas 33.2 3.4E+02 0.0073 27.8 10.0 100 62-170 433-547 (578)
314 PF00676 E1_dh: Dehydrogenase 32.9 1.9E+02 0.0041 26.9 7.5 102 63-172 107-222 (300)
315 cd06067 H2MP_MemB-H2evol Endop 32.6 1.7E+02 0.0036 23.7 6.3 54 207-264 2-61 (136)
316 TIGR00130 frhD coenzyme F420-r 32.5 1.1E+02 0.0023 25.4 5.2 59 203-264 3-70 (153)
317 PF01012 ETF: Electron transfe 31.5 2.9E+02 0.0062 22.7 7.8 74 202-280 32-111 (164)
318 cd00861 ProRS_anticodon_short 31.4 2.1E+02 0.0045 20.8 6.5 57 204-264 3-64 (94)
319 PRK03359 putative electron tra 30.7 3.1E+02 0.0068 25.0 8.3 73 203-278 55-138 (256)
320 PRK01655 spxA transcriptional 30.4 1.2E+02 0.0026 24.5 5.0 42 212-255 8-49 (131)
321 PRK08327 acetolactate synthase 29.8 1.9E+02 0.0041 29.5 7.5 114 49-170 420-562 (569)
322 PRK12753 transketolase; Review 29.6 5.8E+02 0.013 26.7 11.1 91 75-175 148-246 (663)
323 PRK08105 flavodoxin; Provision 29.5 73 0.0016 26.3 3.7 59 206-272 4-66 (149)
324 PRK06703 flavodoxin; Provision 29.0 2E+02 0.0043 23.3 6.3 65 206-278 4-72 (151)
325 PF07881 Fucose_iso_N1: L-fuco 28.8 2.4E+02 0.0052 24.1 6.5 97 214-323 62-160 (171)
326 TIGR02257 cobalto_cobN cobalto 28.6 5.6E+02 0.012 28.8 11.1 60 203-264 25-87 (1122)
327 PF00462 Glutaredoxin: Glutare 28.2 1.1E+02 0.0024 20.4 3.9 28 212-240 7-34 (60)
328 PRK08114 cystathionine beta-ly 28.1 1.5E+02 0.0032 28.9 6.1 34 224-263 122-155 (395)
329 PF03808 Glyco_tran_WecB: Glyc 27.6 2E+02 0.0044 24.2 6.2 59 204-263 48-109 (172)
330 PRK09004 FMN-binding protein M 27.5 1.5E+02 0.0031 24.4 5.2 65 206-280 4-75 (146)
331 PRK05569 flavodoxin; Provision 27.1 1.6E+02 0.0035 23.5 5.3 29 211-240 13-41 (141)
332 TIGR00140 hupD hydrogenase exp 27.0 1.7E+02 0.0037 23.4 5.4 41 220-264 3-45 (134)
333 cd03416 CbiX_SirB_N Sirohydroc 26.9 2.7E+02 0.0059 20.8 6.8 76 205-280 2-84 (101)
334 PF12500 TRSP: TRSP domain C t 26.9 1.1E+02 0.0024 25.7 4.3 33 201-234 56-88 (155)
335 COG0394 Wzb Protein-tyrosine-p 26.5 77 0.0017 26.0 3.3 39 219-265 49-87 (139)
336 cd00248 Mth938-like Mth938-lik 26.5 46 0.00099 26.1 1.9 35 203-238 53-88 (109)
337 PF00701 DHDPS: Dihydrodipicol 26.4 2E+02 0.0043 26.4 6.4 34 229-263 127-162 (289)
338 PRK05568 flavodoxin; Provision 26.3 1.7E+02 0.0036 23.4 5.3 34 207-241 5-42 (142)
339 PRK03692 putative UDP-N-acetyl 26.3 2.1E+02 0.0045 25.9 6.3 60 205-264 106-166 (243)
340 COG1104 NifS Cysteine sulfinat 26.2 1.5E+02 0.0032 28.9 5.6 76 206-282 93-171 (386)
341 TIGR02326 transamin_PhnW 2-ami 25.8 3.1E+02 0.0067 25.7 7.8 28 243-270 146-173 (363)
342 PRK09739 hypothetical protein; 25.8 2.5E+02 0.0054 24.1 6.6 66 213-280 19-104 (199)
343 PRK12321 cobN cobaltochelatase 25.8 6E+02 0.013 28.5 10.7 66 202-271 24-91 (1100)
344 cd05126 Mth938 Mth938 domain. 25.7 37 0.00081 27.0 1.2 36 199-235 55-92 (117)
345 COG0028 IlvB Thiamine pyrophos 25.6 2.7E+02 0.0059 28.4 7.7 113 49-170 398-526 (550)
346 cd00951 KDGDH 5-dehydro-4-deox 25.6 1.9E+02 0.0041 26.6 6.1 62 202-264 94-159 (289)
347 PRK06756 flavodoxin; Provision 25.5 3.6E+02 0.0078 21.7 9.6 63 210-279 12-74 (148)
348 COG1908 FrhD Coenzyme F420-red 25.2 1.4E+02 0.003 24.1 4.3 66 205-270 3-74 (132)
349 PTZ00062 glutaredoxin; Provisi 25.0 1.9E+02 0.0042 25.4 5.7 65 202-273 112-185 (204)
350 cd01482 vWA_collagen_alphaI-XI 24.9 2E+02 0.0042 23.7 5.6 47 205-255 107-153 (164)
351 TIGR00204 dxs 1-deoxy-D-xylulo 24.9 2E+02 0.0043 29.9 6.6 37 137-174 234-273 (617)
352 cd01475 vWA_Matrilin VWA_Matri 24.5 1.6E+02 0.0034 25.8 5.2 55 205-263 112-168 (224)
353 TIGR01753 flav_short flavodoxi 24.5 3.1E+02 0.0068 21.4 6.6 47 208-262 3-53 (140)
354 PF01451 LMWPc: Low molecular 24.4 54 0.0012 26.3 2.0 103 203-323 29-138 (138)
355 TIGR00232 tktlase_bact transke 24.2 7.3E+02 0.016 25.9 10.7 85 82-175 149-242 (653)
356 PRK09590 celB cellobiose phosp 24.0 2.4E+02 0.0052 21.9 5.5 49 202-253 50-101 (104)
357 cd03798 GT1_wlbH_like This fam 24.0 5.1E+02 0.011 23.0 10.4 73 241-324 265-343 (377)
358 cd05560 Xcc1710_like Xcc1710_l 24.0 69 0.0015 25.1 2.4 37 201-238 51-88 (109)
359 cd06066 H2MP_NAD-link-bidir En 24.0 1.9E+02 0.0041 23.4 5.2 53 207-263 2-58 (139)
360 cd01472 vWA_collagen von Wille 23.9 1.9E+02 0.0042 23.6 5.4 53 205-261 107-161 (164)
361 PRK13530 arsenate reductase; P 23.7 1.2E+02 0.0026 24.5 4.0 85 218-324 46-130 (133)
362 PRK03620 5-dehydro-4-deoxygluc 23.6 2.1E+02 0.0046 26.5 6.1 35 229-264 132-166 (303)
363 TIGR00106 uncharacterized prot 23.5 2.4E+02 0.0051 21.6 5.3 50 204-254 4-57 (97)
364 cd01474 vWA_ATR ATR (Anthrax T 23.3 1.1E+02 0.0023 25.9 3.8 56 205-264 107-166 (185)
365 cd01453 vWA_transcription_fact 23.3 4.3E+02 0.0093 22.4 7.5 42 217-263 125-167 (183)
366 cd03414 CbiX_SirB_C Sirohydroc 23.0 3.5E+02 0.0076 20.7 8.4 77 204-280 2-84 (117)
367 PF03514 GRAS: GRAS domain fam 22.9 2E+02 0.0043 27.8 5.9 52 245-299 99-150 (374)
368 TIGR01755 flav_wrbA NAD(P)H:qu 22.8 4.9E+02 0.011 22.3 8.1 67 210-280 11-93 (197)
369 PRK11230 glycolate oxidase sub 22.3 1E+02 0.0022 31.0 3.9 34 137-171 52-85 (499)
370 PF00975 Thioesterase: Thioest 22.2 2.4E+02 0.0051 24.2 5.9 38 204-242 67-105 (229)
371 TIGR02853 spore_dpaA dipicolin 22.1 2.5E+02 0.0055 25.9 6.2 55 201-259 150-214 (287)
372 PRK07308 flavodoxin; Validated 21.9 4.2E+02 0.0092 21.2 8.6 61 211-279 13-73 (146)
373 cd03415 CbiX_CbiC Archaeal sir 21.8 4.1E+02 0.009 21.3 6.7 58 204-261 2-64 (125)
374 cd02000 TPP_E1_PDC_ADC_BCADC T 21.5 4.1E+02 0.0088 24.5 7.5 33 139-172 189-225 (293)
375 PRK10307 putative glycosyl tra 21.5 5.1E+02 0.011 24.6 8.5 105 203-323 260-371 (412)
376 cd00952 CHBPH_aldolase Trans-o 21.4 2.7E+02 0.0058 26.0 6.3 62 202-264 103-171 (309)
377 PF01936 NYN: NYN domain; Int 21.3 1.8E+02 0.0039 23.0 4.6 51 203-262 96-146 (146)
378 KOG1250|consensus 21.3 6.5E+02 0.014 24.8 8.7 114 143-282 115-240 (457)
379 COG4981 Enoyl reductase domain 20.9 1.7E+02 0.0036 29.9 4.9 136 2-158 67-232 (717)
380 cd03795 GT1_like_4 This family 20.9 6.2E+02 0.013 22.8 9.4 106 202-323 218-330 (357)
381 TIGR00762 DegV EDD domain prot 20.7 2.3E+02 0.0049 25.9 5.6 70 4-74 61-136 (275)
382 KOG0572|consensus 20.6 1.6E+02 0.0036 28.6 4.6 27 256-282 357-383 (474)
383 CHL00201 syh histidine-tRNA sy 20.5 2.9E+02 0.0062 27.1 6.6 58 203-264 326-385 (430)
384 PRK03170 dihydrodipicolinate s 20.5 2.6E+02 0.0056 25.6 6.0 48 216-264 114-163 (292)
385 PRK15458 tagatose 6-phosphate 20.5 8.4E+02 0.018 24.1 9.6 111 201-324 13-153 (426)
386 cd02066 GRX_family Glutaredoxi 20.4 2.7E+02 0.0058 18.4 5.1 64 205-272 2-66 (72)
387 PRK13905 murB UDP-N-acetylenol 20.3 5.1E+02 0.011 23.9 7.9 74 144-222 33-110 (298)
388 cd05005 SIS_PHI Hexulose-6-pho 20.2 2.7E+02 0.0059 23.3 5.6 82 200-297 31-112 (179)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-72 Score=504.08 Aligned_cols=316 Identities=49% Similarity=0.821 Sum_probs=301.4
Q ss_pred chHHHHHHH----HHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecc
Q psy8699 8 TGFFQSSPS----QLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~----~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~ 82 (325)
++|++|+++ .|++|++|+++++|++ +||+|+.+.+|.++||++|++|++|+|.+.+|+|.|+|+.|+||+++|+|
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 456666665 8999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
.+|+..++|||.|++++++|+.++.+.|| +++|+|+|..-.++.||||+.+++|.++||++|++|+||.|++.+++.|+
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~P-iviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVP-IVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCC-EEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 99999999999999999999999999999 99999988765678899999999999999999999999999999999999
Q ss_pred hCCCcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccC
Q psy8699 163 KDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILP 242 (325)
Q Consensus 163 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P 242 (325)
+++.||++++||++|+....++|+++|.+|+||+.+.|+|.|+|||+||.|++.+++|+++|+++ ||+++|||++||+|
T Consensus 161 rd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~-Gis~EVIDLRTl~P 239 (324)
T COG0022 161 RDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKE-GISAEVIDLRTLSP 239 (324)
T ss_pred cCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhc-CCCeEEEeccccCc
Confidence 99999999999999997778899889999999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCC--cccccccCCCCHHHHHHHHH
Q psy8699 243 WDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPF--PHIFEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 243 ~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~--~~~~~~~~l~~~~~I~~~i~ 320 (325)
+|.++|.++++||+++++|||.+..+|+|+++++.++|..+++|+.|+.|++|.+.|+ +..+|++.+|++++|+++++
T Consensus 240 lD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~ 319 (324)
T COG0022 240 LDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK 319 (324)
T ss_pred cCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999989999999999999885 46789999999999999999
Q ss_pred HHhhC
Q psy8699 321 QITRY 325 (325)
Q Consensus 321 ~~~~~ 325 (325)
++++|
T Consensus 320 ~v~~~ 324 (324)
T COG0022 320 KVLEF 324 (324)
T ss_pred HHhhC
Confidence 99875
No 2
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-69 Score=480.56 Aligned_cols=292 Identities=24% Similarity=0.394 Sum_probs=263.5
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHH
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ 87 (325)
..|++.|.++.++++++|++++|+..++ .+..|.++| |+||+|+||+||+|+|+|+|+|++|++||++ ||+.|+.
T Consensus 11 ~~~g~~L~~l~~~~~diVvl~ADl~~St---~~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-tfa~F~s 85 (312)
T COG3958 11 KVYGETLAELGRKNSDIVVLDADLSSST---KTGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS-TFAAFLS 85 (312)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccc---chhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceee-chHHHHH
Confidence 4667777779999999999999998543 288999999 9999999999999999999999999999999 9999995
Q ss_pred -HHHHHHHHHHhhcccccCCceeccceEEeccCccC-C-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC
Q psy8699 88 -PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-G-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD 164 (325)
Q Consensus 88 -ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~ 164 (325)
|+||||++++++.++ +|+.++ ++.|.+ | +|+|||+.+|+++||.+||++|++|+|+.+++++++++.++
T Consensus 86 ~Ra~EQir~~iay~~l---nVKiv~-----t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~~ 157 (312)
T COG3958 86 RRAWEQIRNSIAYNNL---NVKIVA-----THAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIADY 157 (312)
T ss_pred HHHHHHHHHHhhhccC---CeEEEE-----ecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHhc
Confidence 999999999996554 555433 345653 5 59999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccccccCCCCC-CcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCC
Q psy8699 165 KDPCIFFEPKVLYRAAVEDVPED-YYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPW 243 (325)
Q Consensus 165 ~~Pv~i~~~~~l~~~~~~~~~~~-~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~ 243 (325)
++|+|+ |+.|.+.|.+..+ ++.|++||++++++|.|++||++|.|+..+++|++.|+++ ||+++|||+.|+||+
T Consensus 158 ~GP~Y~----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~-GIsa~Vi~m~tIKPi 232 (312)
T COG3958 158 KGPVYM----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKE-GISAAVINMFTIKPI 232 (312)
T ss_pred CCCEEE----EecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhc-CCCEEEEecCccCCC
Confidence 999999 7777665555444 4899999999999999999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHH
Q psy8699 244 DRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLE 317 (325)
Q Consensus 244 d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~ 317 (325)
|++.+.+..+++++|+++|||++.||||+.|++.+.+++ +.|++|+ |.++.|+ +++++||| ++++|++
T Consensus 233 D~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~ri-Gvp~~fg~sg~~~~Ll~~ygl-~~~~I~~ 306 (312)
T COG3958 233 DEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRI-GVPDTFGRSGKADELLDYYGL-DPESIAA 306 (312)
T ss_pred CHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEe-cCCchhccccchHHHHHHhCC-CHHHHHH
Confidence 999999999999999999999999999999999999975 5788888 8888887 56889999 9999999
Q ss_pred HHHHHh
Q psy8699 318 AVKQIT 323 (325)
Q Consensus 318 ~i~~~~ 323 (325)
++++++
T Consensus 307 ~v~~~~ 312 (312)
T COG3958 307 RVLELL 312 (312)
T ss_pred HHHhhC
Confidence 999874
No 3
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=7e-65 Score=481.54 Aligned_cols=316 Identities=34% Similarity=0.566 Sum_probs=274.7
Q ss_pred ccchHHHHHHH----HHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEe
Q psy8699 6 YWTGFFQSSPS----QLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEI 80 (325)
Q Consensus 6 ~~~~~~~a~~~----~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~i 80 (325)
+++++++++.+ ++++|++++++++|++ .+++++.+++|.++|+|+||+|+||+||+|+++|+|+|++|+|||+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 44566666654 8999999999999998 455677788999999899999999999999999999999999999995
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-CCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-GHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
.++.|++|+||||++++|+++|+..+.+..+ ++++++.|.. |.|+||| +.++++||++||++|++|+|+.|++.+++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~p-V~i~~~~G~~~g~G~tH~-~~~~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVP-IVFRGPNGAAAGVGAQHS-QCFAAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCC-EEEEEeCCCCCCCCCccc-cCHHHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 4577789999999999999999888877776 7777766653 4567775 55589999999999999999999999999
Q ss_pred HhHhCCCcEEEecccccccccccCC---CCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEe
Q psy8699 160 SCIKDKDPCIFFEPKVLYRAAVEDV---PEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 160 ~a~~~~~Pv~i~~~~~l~~~~~~~~---~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~ 236 (325)
++++.++|+|||+++.+++...+.. +++++.+++||++++++|.|++||++|+++..|++|++.|+++ ||+++|||
T Consensus 183 ~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~-GI~v~VId 261 (356)
T PLN02683 183 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKE-GISAEVIN 261 (356)
T ss_pred HHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 9999999999999887776532211 1224678899999999999999999999999999999999998 99999999
Q ss_pred cccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc--ccccccCCCCHHH
Q psy8699 237 LVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP--HIFEPFYIPDKWR 314 (325)
Q Consensus 237 ~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~--~~~~~~~l~~~~~ 314 (325)
++|++|||++.|.++++++++|+|+|||+..||||++|++.+.+++++.++.|+.|++..|.+.| ..++++++|++++
T Consensus 262 ~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p~~~~ 341 (356)
T PLN02683 262 LRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLALPQVED 341 (356)
T ss_pred CCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhCCCHHH
Confidence 99999999999999999999999999999999999999999999876556779999955555555 4689999999999
Q ss_pred HHHHHHHHhh
Q psy8699 315 CLEAVKQITR 324 (325)
Q Consensus 315 I~~~i~~~~~ 324 (325)
|++++++++.
T Consensus 342 i~~a~~~~~~ 351 (356)
T PLN02683 342 IVRAAKRACY 351 (356)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 4
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=4.7e-65 Score=495.62 Aligned_cols=311 Identities=37% Similarity=0.632 Sum_probs=275.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 10 FFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 10 ~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
++++|.+++++|++++++++|++ ++|.|+.+.+|.++|||+||||+||+||+++|+|+|||++|+|||++++++.|++|
T Consensus 148 ~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~~~~f~~r 227 (464)
T PRK11892 148 LRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEFMTFNFAMQ 227 (464)
T ss_pred HHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEEehHHHHHH
Confidence 44444458999999999999997 45677778999999999999999999999999999999999999999545667899
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcE
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPC 168 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv 168 (325)
+||||+|+++++.|++++.+.++ +++|++.|.....++||+++|+++|+++||++|++|+|+.|++.+++++++.++|+
T Consensus 228 a~dQI~n~~ak~~~~sgg~~~~p-Vv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv 306 (464)
T PRK11892 228 AIDQIINSAAKTLYMSGGQMGCP-IVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPV 306 (464)
T ss_pred HHHHHHHHHhHHhhhcCCccCCC-EEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcE
Confidence 99999999999999988888887 88888777654444599999999999999999999999999999999999999999
Q ss_pred EEecccccccccccCCCC-CCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHH
Q psy8699 169 IFFEPKVLYRAAVEDVPE-DYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET 247 (325)
Q Consensus 169 ~i~~~~~l~~~~~~~~~~-~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~ 247 (325)
||++++.+|+.. ..++. +++.+++||++++++|.|++||++|+++..|++|++.|+++ ||+++|||++||+|||.+.
T Consensus 307 ~ile~~~ry~~~-~~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~-GI~~~VIdl~tlkPlD~~~ 384 (464)
T PRK11892 307 IFLENEILYGQS-FDVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKE-GIDAEVIDLRTIRPMDTET 384 (464)
T ss_pred EEEechhhcCCC-CCCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhc-CCCEEEEECCCCCcCCHHH
Confidence 999988666542 12222 35778999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q psy8699 248 VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP--HIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 248 l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~--~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
|.++++++++|+++|||+..||||++|++++.++++++++.|+.|++..+.+.+ .++++++||++++|++++++++
T Consensus 385 i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv~av~~~~ 462 (464)
T PRK11892 385 IVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVVEAVKAVC 462 (464)
T ss_pred HHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887767889999955443333 5789999999999999999875
No 5
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.3e-64 Score=475.83 Aligned_cols=311 Identities=38% Similarity=0.653 Sum_probs=271.3
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEeccc-ccH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA-DYI 86 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~-~F~ 86 (325)
.++++|.+++++|++++++++|++ .+++|+.+++|+++|||+||+|+||+||+|+++|+|+|++|+|||+++ ++ .|+
T Consensus 9 a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~-~~~~f~ 87 (327)
T PRK09212 9 ALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF-MTFNFS 87 (327)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe-ehhhHH
Confidence 344445558999999999999998 455677789999999889999999999999999999999999999994 66 677
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDK 165 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~ 165 (325)
+||||||++++|+++++..+...++ ++++.+.|..+. |+||| +..+++|+++||++|++|+|+.|++.+++++++.+
T Consensus 88 ~ra~dQi~~d~a~~~~~~~~~~~v~-vv~~~~~g~~~~~G~tH~-~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~~ 165 (327)
T PRK09212 88 MQAIDQIVNSAAKTNYMSGGQLKCP-IVFRGPNGAAARVAAQHS-QCYAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDP 165 (327)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCcc-EEEEeCCCCCCCCCcccc-cCHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 9999999999999998887766776 778877776654 77773 33349999999999999999999999999999999
Q ss_pred CcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH
Q psy8699 166 DPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR 245 (325)
Q Consensus 166 ~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~ 245 (325)
+|+||++++..+.. .++++.+++.+++||+.++++|.|++||+||+++..|++|++.|+++ |++++||++++++|||+
T Consensus 166 ~Pv~i~~~~~~~~~-~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~-Gi~v~vi~~~~l~Pld~ 243 (327)
T PRK09212 166 NPVIFLENEILYGH-SHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKE-GISVEVIDLRTLRPLDT 243 (327)
T ss_pred CcEEEEEchhhcCC-CCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhc-CCcEEEEEEecCCCCCH
Confidence 99999998866652 34455555788999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q psy8699 246 ETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP--HIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 246 ~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~--~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
+.|.++++++++|+++|||+..||||+++++++.++++..++.++.++.+.+.+.+ ++++++++|++++|++++++++
T Consensus 244 ~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~le~~~l~~~~~I~~~i~~~~ 323 (327)
T PRK09212 244 ETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAVKKVC 323 (327)
T ss_pred HHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765445678999966664433 5689999999999999999987
Q ss_pred h
Q psy8699 324 R 324 (325)
Q Consensus 324 ~ 324 (325)
+
T Consensus 324 ~ 324 (327)
T PRK09212 324 Y 324 (327)
T ss_pred h
Confidence 4
No 6
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.7e-64 Score=474.50 Aligned_cols=309 Identities=36% Similarity=0.602 Sum_probs=266.9
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCC-CcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGF-GGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~-~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
.++++|.+++++||+++++++|++. +|+++.+++|.++| |+ ||||+||+||+|+++|+|||++|+|||+++.++.|+
T Consensus 9 a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~~~f~ 87 (327)
T CHL00144 9 ALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFL 87 (327)
T ss_pred HHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEEeehhhHH
Confidence 3445555589999999999999973 34566689999999 78 999999999999999999999999999984445567
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccC-CCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-GHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDK 165 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~ 165 (325)
+|++|||++++|+++|+.++...++ ++++.+++.. +.|+||| +..+++|+++|||+|++|+|+.|++.+++++++.+
T Consensus 88 ~ra~dQi~~~~a~~~~~~gg~~~~~-vv~~~~g~~~~~~G~tHs-~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a~~~~ 165 (327)
T CHL00144 88 LLAFNQISNNAGMLHYTSGGNFTIP-IVIRGPGGVGRQLGAEHS-QRLESYFQSVPGLQIVACSTPYNAKGLLKSAIRSN 165 (327)
T ss_pred HHHHHHHHHHHHHHhhccCCCccCC-EEEEecCCCCCCCCcccc-ccHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 9999999999999998887777777 7777654433 3578873 33359999999999999999999999999999999
Q ss_pred CcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH
Q psy8699 166 DPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR 245 (325)
Q Consensus 166 ~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~ 245 (325)
+|+|||+|+.+++.. +.++.+++.+++||+.++++|.|++||++|++++.|++|++.|+++ ||+++|||++|++|||+
T Consensus 166 ~Pv~ire~~~l~~~~-~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~ikPlD~ 243 (327)
T CHL00144 166 NPVIFFEHVLLYNLK-EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEK-GYDPEIIDLISLKPLDL 243 (327)
T ss_pred CcEEEEEcHHhcCCC-CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhc-CCCEEEEecCcCCCCCH
Confidence 999999999999865 5566666788999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCC-Cc---ccccccCCCCHHHHHHHHHH
Q psy8699 246 ETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTP-FP---HIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 246 ~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~-~~---~~~~~~~l~~~~~I~~~i~~ 321 (325)
+.|.++++++++|+++|||+..||||++|++.+.+++++.++.|+.++ +.++. .+ .+.+.+++ |+++|++++++
T Consensus 244 ~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl-~~~d~~~~~~~~~~~~~gl-~~~~I~~~i~~ 321 (327)
T CHL00144 244 GTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRL-SSQDVPTPYNGPLEEATVI-QPAQIIEAVEQ 321 (327)
T ss_pred HHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEE-ccCCCcCCCCccHHHHhCC-CHHHHHHHHHH
Confidence 999999999999999999999999999999999998765567899999 55443 33 22234566 99999999999
Q ss_pred Hhh
Q psy8699 322 ITR 324 (325)
Q Consensus 322 ~~~ 324 (325)
+++
T Consensus 322 ~l~ 324 (327)
T CHL00144 322 IIT 324 (327)
T ss_pred HHh
Confidence 874
No 7
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-64 Score=478.75 Aligned_cols=312 Identities=55% Similarity=0.934 Sum_probs=273.8
Q ss_pred chHHHHHH----HHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecc
Q psy8699 8 TGFFQSSP----SQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~----~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~ 82 (325)
++|++++. +++++||+++++++|++ .|++++.+++|+++|||+||+|+||+||+|+++|+|||++|+|||++++|
T Consensus 35 ~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~~f 114 (355)
T PTZ00182 35 MNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMF 114 (355)
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEech
Confidence 45555554 58899999999999997 45567778999999988999999999999999999999999999999558
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
++|++|++|||++++++++++.++...++ ++++.++|..+. |+||+ +..+++|+++||++|++|+|+.|++.+++++
T Consensus 115 a~Fl~ra~dQi~~d~a~~~~~~~g~~~v~-vv~~~~~g~~g~~G~tHs-~~~ea~lr~iPn~~V~~Psd~~e~~~~l~~a 192 (355)
T PTZ00182 115 ADFIFPAFDQIVNEAAKYRYMSGGQFDCP-IVIRGPNGAVGHGGAYHS-QSFEAYFAHVPGLKVVAPSDPEDAKGLLKAA 192 (355)
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCccCC-EEEEeCCCCCCCCCCccc-chHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999988877666776 777777776665 66663 4445999999999999999999999999999
Q ss_pred HhCCCcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccccc
Q psy8699 162 IKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSIL 241 (325)
Q Consensus 162 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~ 241 (325)
++.++|+||++||+++|...+.++.+++.+++||++++++|.|++||+||+++..+++|++.|+++ |++++||++++++
T Consensus 193 ~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~-Gi~v~vI~~~~l~ 271 (355)
T PTZ00182 193 IRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKE-GISCEVIDLRSLR 271 (355)
T ss_pred HhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhC-CCcEEEEEEeeCC
Confidence 999999999999999987655555445788899999999999999999999999999999999998 9999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCC-c--ccccccCCCCHHHHHHH
Q psy8699 242 PWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPF-P--HIFEPFYIPDKWRCLEA 318 (325)
Q Consensus 242 P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~-~--~~~~~~~l~~~~~I~~~ 318 (325)
|||.+.|.+.++++++|+++|||+..||||+.|++++.+++++.++.|++|+ +.++.+ | ..++.+.+|++++|+++
T Consensus 272 Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri-~~~d~~~p~~~~le~~~~~~~~~i~~~ 350 (355)
T PTZ00182 272 PWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRV-CGADTPFPYAKNLEPAYLPDKEKVVEA 350 (355)
T ss_pred CCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEe-CCCCccCCCChHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999998765567899999 554433 3 34677777899999999
Q ss_pred HHHHh
Q psy8699 319 VKQIT 323 (325)
Q Consensus 319 i~~~~ 323 (325)
|++++
T Consensus 351 ~~~~~ 355 (355)
T PTZ00182 351 AKRVL 355 (355)
T ss_pred HHHhC
Confidence 99874
No 8
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1e-60 Score=478.87 Aligned_cols=297 Identities=19% Similarity=0.256 Sum_probs=257.3
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.|.++|.+++++|++++++++|++.++ .+..|+++| |+||||+||+||+|+++|+|||.+|+|||++ +|++|++|
T Consensus 386 ~f~~aL~~la~~D~~Iv~Itadm~~gt---gl~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~-iystFlqR 460 (701)
T PLN02225 386 CFVEALVMEAEKDRDIVVVHAGMEMDA---SLITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCI-IPSAFLQR 460 (701)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccCcc---cHHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEE-eehhHHHH
Confidence 344666668999999999999998542 279999999 9999999999999999999999999999999 69999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-CCC
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK-DKD 166 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~-~~~ 166 (325)
|||||++++|++++|+. ++++ +.|.+| +|+|||+.+|+++||++|||+|++|+|+.|++.++++|+. .++
T Consensus 461 AyDQI~~Dval~~lpV~-------~vid-~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~g 532 (701)
T PLN02225 461 AYDQVVHDVDRQRKAVR-------FVIT-SAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDR 532 (701)
T ss_pred HHHHHHHHHHhhcCCce-------EEEE-CCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCC
Confidence 99999999999988653 2233 346666 5899999999999999999999999999999999999985 579
Q ss_pred cEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699 167 PCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE 246 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~ 246 (325)
|+|||+||.........++ +++.+++||++++++|.|++||++|+++..|++|++.|+++ ||+++|||++++||||++
T Consensus 533 Pv~IR~pRg~~~~~~~~~~-~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~-GI~vtVIdlr~ikPLD~e 610 (701)
T PLN02225 533 PVCFRFPRGSIVNMNYLVP-TGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKL-GLNVTVADARFCKPLDIK 610 (701)
T ss_pred CEEEEecccccCCCCcCCC-CCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhc-CCCEEEEecCCCCCCCHH
Confidence 9999999864322111112 23678899999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHH
Q psy8699 247 TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 247 ~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~ 320 (325)
.|.++++++++||++|||.. ||||+.|++++.+.+....+.+++++ |.++.|. ++++.+|| |+++|+++|+
T Consensus 611 ~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~i-Gipd~F~~~G~~~~ll~~~GL-dae~I~~~i~ 687 (701)
T PLN02225 611 LVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPI-VLPDGYIEEASPREQLALAGL-TGHHIAATAL 687 (701)
T ss_pred HHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEE-ecCCcCcCCCCHHHHHHHhCc-CHHHHHHHHH
Confidence 99999999999999999986 99999999999987420013578788 8888776 46788999 9999999999
Q ss_pred HHh
Q psy8699 321 QIT 323 (325)
Q Consensus 321 ~~~ 323 (325)
+++
T Consensus 688 ~~l 690 (701)
T PLN02225 688 SLL 690 (701)
T ss_pred HHH
Confidence 887
No 9
>KOG0524|consensus
Probab=100.00 E-value=6.2e-60 Score=414.49 Aligned_cols=316 Identities=36% Similarity=0.581 Sum_probs=294.2
Q ss_pred CccchHHHHHHH----HHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEE
Q psy8699 5 GYWTGFFQSSPS----QLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAE 79 (325)
Q Consensus 5 ~~~~~~~~a~~~----~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~ 79 (325)
+++++.+|||++ .|++|+++++++++++ ++|+|+.+++|.+|||+.|++|++|.|.+..|+|.|+|+.|+||+++
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e 111 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE 111 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence 678899999987 7889999999999999 88899999999999999999999999999999999999999999999
Q ss_pred ecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 80 IQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 80 it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
++...|++.+.|||.|++++++|++++.++|+ +++|+|.|....-+.+|||+..+|+.++||++|++|.++++++.+++
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~p-iVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVP-IVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hhcchhHHHHHHHHHHHHHHHhcccCCceecc-EEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHH
Confidence 77777889999999999999999999999999 99999888765546688999999999999999999999999999999
Q ss_pred HhHhCCCcEEEecccccccccccCCCC----CCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEE
Q psy8699 160 SCIKDKDPCIFFEPKVLYRAAVEDVPE----DYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVI 235 (325)
Q Consensus 160 ~a~~~~~Pv~i~~~~~l~~~~~~~~~~----~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi 235 (325)
.|+++++||+++++..||.... ++++ ++|..|+||+.+.|+|.+++|+++..++..++||++.|.++ |++++||
T Consensus 191 aAIRd~NPVV~lEnelLYg~~f-~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~-Gvs~EVI 268 (359)
T KOG0524|consen 191 AAIRDENPVVFLENELLYGLSF-EIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAK-GVSAEVI 268 (359)
T ss_pred HhccCCCCeEEEechhhcCCCc-cCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhc-CCCceeE
Confidence 9999999999999998887653 3333 35788999999999999999999999999999999999999 9999999
Q ss_pred ecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc--ccccccCCCCHH
Q psy8699 236 DLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP--HIFEPFYIPDKW 313 (325)
Q Consensus 236 ~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~--~~~~~~~l~~~~ 313 (325)
|+++|+|||.++|.++++|+.++++||+....+|+|+++++.+.|..++.|+.|+.|++|.|-|.| ..+|.+.+|+++
T Consensus 269 nlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~ 348 (359)
T KOG0524|consen 269 NLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPA 348 (359)
T ss_pred eeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccchhhHhhcCCCHH
Confidence 999999999999999999999999999999999999999999999888889999999998887665 568999999999
Q ss_pred HHHHHHHHHh
Q psy8699 314 RCLEAVKQIT 323 (325)
Q Consensus 314 ~I~~~i~~~~ 323 (325)
+|+.+++++.
T Consensus 349 ~iV~Avk~~~ 358 (359)
T KOG0524|consen 349 DIVTAVKKLC 358 (359)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 10
>KOG0525|consensus
Probab=100.00 E-value=6.7e-60 Score=408.99 Aligned_cols=321 Identities=69% Similarity=1.198 Sum_probs=308.9
Q ss_pred CccchHHHHHHH----HHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEe
Q psy8699 5 GYWTGFFQSSPS----QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEI 80 (325)
Q Consensus 5 ~~~~~~~~a~~~----~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~i 80 (325)
.+++++-.++++ .++.||+-+++++|++.||+|.++.+|+++||.+|+||+++.||+++|+.+|+|..|.+.+.+|
T Consensus 38 ~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei 117 (362)
T KOG0525|consen 38 KKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI 117 (362)
T ss_pred cccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence 356666666665 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
+|++++-.|+|||.|.+++.+|.+++++.||++++|+|.|.+|.|+..|||+.+++|.+.||++|+.|.+|.|++.++..
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhCCCcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy8699 161 CIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSI 240 (325)
Q Consensus 161 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l 240 (325)
++++++|+++++||.+||...+++|.++|.+|++.++++++|.|+++++||..++.++|++..-+++.|++++|||+.++
T Consensus 198 cirdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti 277 (362)
T KOG0525|consen 198 CIRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTI 277 (362)
T ss_pred eccCCCceEEechHHHHHHhhhhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999998877766999999999999
Q ss_pred cCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHH
Q psy8699 241 LPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 241 ~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~ 320 (325)
-|+|.+.+.++++|++++++-.|...+||+|+++++.+.|+++..|..|+.|++|.|.|||++.+.+++|++.+|.++|+
T Consensus 278 ~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~vfepfy~ptk~ki~daik 357 (362)
T KOG0525|consen 278 IPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPHVFEPFYMPTKNKILDAIK 357 (362)
T ss_pred cCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcccccccccCcHhHHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhC
Q psy8699 321 QITRY 325 (325)
Q Consensus 321 ~~~~~ 325 (325)
+.++|
T Consensus 358 ~~vny 362 (362)
T KOG0525|consen 358 KTVNY 362 (362)
T ss_pred HhccC
Confidence 99988
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=7.2e-58 Score=461.90 Aligned_cols=293 Identities=19% Similarity=0.302 Sum_probs=255.1
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.|.++|.+++++|++++++++|+..++ .+++|+++| |+||+|+||+||+|+++|+|||++|++||++ +|++|++|
T Consensus 315 a~~~~L~~~~~~d~~iv~i~ad~~~~~---~~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~-~~a~Fl~r 389 (617)
T TIGR00204 315 IFSDTLCELAKKDNKIVGITPAMPEGS---GLDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVA-IYSTFLQR 389 (617)
T ss_pred HHHHHHHHHHhhCcCEEEEECCccCCc---ChHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEE-ecHHHHHH
Confidence 455555568999999999999996432 289999999 9999999999999999999999999999999 69999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEe-ccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC-
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIR-APCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDK- 165 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~-~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~- 165 (325)
+||||++++|++++|. +++ .++|.+| +|+|||+.+|+++|+++||++|++|+|+.|++.+++++++.+
T Consensus 390 a~dQi~~~~a~~~lpV---------~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~ 460 (617)
T TIGR00204 390 AYDQVVHDVCIQKLPV---------LFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDD 460 (617)
T ss_pred HHHHHHHHHHhcCCCE---------EEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCC
Confidence 9999999999776543 222 2345555 499999999999999999999999999999999999999864
Q ss_pred CcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH
Q psy8699 166 DPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR 245 (325)
Q Consensus 166 ~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~ 245 (325)
+|+|||+||..+... ..+.+++.+++||++++++|.|++||++|++++.|++|++.|+++ |++++|||++|++|||+
T Consensus 461 ~Pv~ir~~r~~~~~~--~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~-gi~~~VId~~~lkPlD~ 537 (617)
T TIGR00204 461 GPIAVRYPRGNAVGV--ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEK-GIEATVVDARFVKPLDE 537 (617)
T ss_pred CCEEEEEccCCcCCc--ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhc-CCCEEEEecCcCCcCCH
Confidence 999999987543211 111223678899999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHH
Q psy8699 246 ETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAV 319 (325)
Q Consensus 246 ~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i 319 (325)
+.+.++++++++|+|+|||+..||||+++++++.+.+ ++.|+.++ |.++.|. ++++.+|| |+++|+++|
T Consensus 538 e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~i-g~~d~~~~~g~~~~L~~~~Gl-~~~~I~~~i 612 (617)
T TIGR00204 538 ELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRL-GIPDFFIPHGTQEEVLAELGL-DTAGMEAKI 612 (617)
T ss_pred HHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEE-eCCCcCcCCCCHHHHHHHHCc-CHHHHHHHH
Confidence 9999999999999999999999999999999999874 45789999 6665443 56788999 999999999
Q ss_pred HHHh
Q psy8699 320 KQIT 323 (325)
Q Consensus 320 ~~~~ 323 (325)
++++
T Consensus 613 ~~~~ 616 (617)
T TIGR00204 613 LAWL 616 (617)
T ss_pred HHhh
Confidence 9876
No 12
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.6e-57 Score=439.78 Aligned_cols=295 Identities=18% Similarity=0.303 Sum_probs=262.2
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.|.++|.+++++|++++.+++.+..| + .+..|.++| |+||||+|||||++|++|+|||.+|+|||++| ||+|+||
T Consensus 321 vf~~~L~~~a~~d~~ivaITaAM~~g-t--GL~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI-YSTFLQR 395 (627)
T COG1154 321 VFGDTLCELAAKDEKIVAITAAMPEG-T--GLVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI-YSTFLQR 395 (627)
T ss_pred HHHHHHHHHHhhCCCeEEEecCCCCC-C--ChHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEE-ecHHHHH
Confidence 56777777999999999999999854 2 489999999 99999999999999999999999999999997 9999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC-C
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDK-D 166 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~-~ 166 (325)
||||+.+|+|.+++|+.. .+.| .|.+| +|.|||+..|+++++++|||.|++|+|.+|++.++.+++..+ +
T Consensus 396 AYDQliHDvaiqnLPV~f------aIDR--AGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~g 467 (627)
T COG1154 396 AYDQLIHDVAIQNLPVTF------AIDR--AGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDG 467 (627)
T ss_pred HHHHHHHHHHhccCCeEE------EEec--CcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999998742 2334 48777 599999999999999999999999999999999999999965 8
Q ss_pred cEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699 167 PCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE 246 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~ 246 (325)
|+.||+||.-..... ...+...+++||++++++|.|++|+++|.++..|++|++.|.+. ||+++|||++++||+|++
T Consensus 468 P~AiRyPrg~~~~~~--~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~-Gi~~TVvd~rfvkPlD~~ 544 (627)
T COG1154 468 PVAIRYPRGNGVGVI--LTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAY-GISVTVVDPRFVKPLDEA 544 (627)
T ss_pred CeEEEecCCCCCCCC--cccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhc-CCCcEEEcCeecCCCCHH
Confidence 999999985322111 11112467899999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHH
Q psy8699 247 TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 247 ~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~ 320 (325)
.|.++.+..+.+|++||+...||+|+.|++++.+.+ +..|+.++ |.++.|. ++++.++| +++.|.++|.
T Consensus 545 ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~---~~~~v~~l-glpd~fi~hg~~~el~~~~gL-d~~~i~~~i~ 619 (627)
T COG1154 545 LLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHG---ILVPVLNL-GLPDEFIDHGSPEELLAELGL-DAEGIARRIL 619 (627)
T ss_pred HHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcC---CCCceEEe-cCChHhhccCCHHHHHHHcCC-CHHHHHHHHH
Confidence 999999999999999999999999999999999875 34788888 8888775 46788999 9999999999
Q ss_pred HHhh
Q psy8699 321 QITR 324 (325)
Q Consensus 321 ~~~~ 324 (325)
++++
T Consensus 620 ~~l~ 623 (627)
T COG1154 620 EWLK 623 (627)
T ss_pred HHHh
Confidence 8875
No 13
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.5e-57 Score=456.32 Aligned_cols=296 Identities=19% Similarity=0.250 Sum_probs=252.9
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.|.++|.+++++|++++++++|++. .++ +..|+++| |+||||+||+||+|+++|+|||+.|+|||++ +|++|++|
T Consensus 361 a~~~aL~~~a~~d~~vv~ita~m~g--~~g-l~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~-~fs~Fl~R 435 (677)
T PLN02582 361 YFAEALIAEAEVDKDVVAIHAAMGG--GTG-LNLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFLQR 435 (677)
T ss_pred HHHHHHHHHHccCCCEEEEeCCCCC--ccc-hHHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEE-ecHHHHHH
Confidence 5777777799999999999999873 344 67999999 9999999999999999999999999999999 69999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CC
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KD 166 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~ 166 (325)
+||||++++|++++|+..+ ..+.|.+| +|+|||+.+|++++|++||++|++|+|+.|++.+++++++. ++
T Consensus 436 A~DQI~~dval~~lpVv~v--------~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~g 507 (677)
T PLN02582 436 GYDQVVHDVDLQKLPVRFA--------MDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDR 507 (677)
T ss_pred HHHHHHHHHHhcCCCEEEE--------EECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 9999999999877655311 12245555 59999999999999999999999999999999999999975 69
Q ss_pred cEEEecccccccccccCCCCC--CcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC
Q psy8699 167 PCIFFEPKVLYRAAVEDVPED--YYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD 244 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~--~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d 244 (325)
|+|||+||..... ..++.. ++.+++||++++++|.|++||++|++++.|++|++.|+++ |++++|||++|++|||
T Consensus 508 Pv~IR~pr~~~~~--~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~-GI~~~VId~~~lkPlD 584 (677)
T PLN02582 508 PSCFRYPRGNGIG--VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERH-GLSATVADARFCKPLD 584 (677)
T ss_pred CEEEEEecCCCCC--cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhc-CCCEEEEEcCcCCCCC
Confidence 9999998753111 112211 2467899999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHH
Q psy8699 245 RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEA 318 (325)
Q Consensus 245 ~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~ 318 (325)
++.+.+.+++++.+|++|||.. ||||+.|++++.+.+......++.++ |.++.|. ++++.+|| |+++|+++
T Consensus 585 ~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~-Gi~d~F~~~G~~~~L~~~~GL-~~e~I~~~ 661 (677)
T PLN02582 585 RALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPL-VLPDRYIDHGAPADQLAEAGL-TPSHIAAT 661 (677)
T ss_pred HHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEe-cCCCcccCcCCHHHHHHHhCc-CHHHHHHH
Confidence 9999888777788899999977 99999999999986421112477788 7777775 46789999 99999999
Q ss_pred HHHHh
Q psy8699 319 VKQIT 323 (325)
Q Consensus 319 i~~~~ 323 (325)
|++++
T Consensus 662 i~~~l 666 (677)
T PLN02582 662 VLNVL 666 (677)
T ss_pred HHHHH
Confidence 99887
No 14
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-56 Score=453.98 Aligned_cols=298 Identities=21% Similarity=0.300 Sum_probs=254.5
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.|.++|.+++++|++++++++|+..+ + .+.+|.++| |+||||+||+||+|+++|+|||++|++||++ +|++|++|
T Consensus 324 ~f~~~L~~la~~d~~iv~isadl~~~-~--~~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~-~f~~Fl~r 398 (641)
T PRK12571 324 VFGEELTKEAAEDSDIVAITAAMPLG-T--GLDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA-VYSTFLQR 398 (641)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccCC-C--ChHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEE-ehHHHHHH
Confidence 44556666899999999999999643 2 278999999 9999999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-CCC
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK-DKD 166 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~-~~~ 166 (325)
++|||++++|++++|+. ++. .+.|.+| +|+|||+.+|+++||++||++|++|+|+.|++.++++|++ .++
T Consensus 399 a~dQI~~~~a~~~lpv~-------~v~-~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 399 GYDQLLHDVALQNLPVR-------FVL-DRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred HHHHHHHHHhhcCCCeE-------EEE-ECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999998776552 111 2445555 5999999999999999999999999999999999999999 489
Q ss_pred cEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699 167 PCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE 246 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~ 246 (325)
|+|||+||..+.. ..++.+++.+++||+.++++|.|++||++|+++..|++|++.|+++ |++++|||+++++|||++
T Consensus 471 P~~ir~~r~~~~~--~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~-Gi~v~VId~~~lkPlD~~ 547 (641)
T PRK12571 471 PIAVRFPRGEGVG--VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAE-GISVTVADPRFVKPLDEA 547 (641)
T ss_pred cEEEEEecCcCCc--cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEEcCcCCCcCHH
Confidence 9999888753311 1233334568899999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHH
Q psy8699 247 TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 247 ~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~ 320 (325)
.+.+.+ ++++++++||+...||||++|++++.++++..++.|++++ |.++.|. ++++++++ ++++|+++|+
T Consensus 548 ~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~i-g~~d~f~~~g~~~el~~~~gl-~~~~I~~~i~ 624 (641)
T PRK12571 548 LTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTL-GLPDRFIDHASREEMYAEAGL-TAPDIAAAVT 624 (641)
T ss_pred HHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEE-ecCCcCCCCCCHHHHHHHhCc-CHHHHHHHHH
Confidence 885554 5568999999999999999999999988654456789888 6655443 45778899 9999999999
Q ss_pred HHhhC
Q psy8699 321 QITRY 325 (325)
Q Consensus 321 ~~~~~ 325 (325)
++++|
T Consensus 625 ~~l~~ 629 (641)
T PRK12571 625 GALAR 629 (641)
T ss_pred HHHHh
Confidence 99875
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=6.6e-56 Score=445.27 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=248.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHHH
Q psy8699 10 FFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPA 89 (325)
Q Consensus 10 ~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ra 89 (325)
++++|.+++++|++++++++|++. .++ +.+|.++| |+||||+||+||+|+++|+|+|++|++||++ +|++|++||
T Consensus 284 ~~~~l~~~~~~d~~i~~i~~~~~~--~~~-~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~-~fs~Fl~ra 358 (581)
T PRK12315 284 TLDYLLKKIKEGKPVVAINAAIPG--VFG-LKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIF-VNSTFLQRA 358 (581)
T ss_pred HHHHHHHHhccCCCEEEEeCcccc--ccC-cHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEE-eeHHHHHHH
Confidence 444455588999999999999864 344 69999999 8999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcE
Q psy8699 90 FDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDPC 168 (325)
Q Consensus 90 ~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv 168 (325)
+|||++++|++++|+. .+ ..+.|.+++|+|||+.+|+++||++||++|++|+|+.|++.++++|++. ++|+
T Consensus 359 ~dQi~~d~a~~~lpv~---~~-----~~~~g~~~dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~ 430 (581)
T PRK12315 359 YDQLSHDLAINNNPAV---MI-----VFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPV 430 (581)
T ss_pred HHHHHHHHHhcCCCEE---EE-----EECCcccCCCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcE
Confidence 9999999998776542 11 1234555589999999999999999999999999999999999999986 7999
Q ss_pred EEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHH
Q psy8699 169 IFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV 248 (325)
Q Consensus 169 ~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l 248 (325)
|||+||..++. .+..+..+..+|+.++++|.|++||++|++++.|++|++.|++++||+++|||++|++|||++.+
T Consensus 431 ~ir~~r~~~~~----~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i 506 (581)
T PRK12315 431 AIRVPEHGVES----GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELL 506 (581)
T ss_pred EEEEcCCccCC----CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHH
Confidence 99998765432 11111234456889999999999999999999999999999775599999999999999999998
Q ss_pred HHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHHH
Q psy8699 249 FQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQI 322 (325)
Q Consensus 249 ~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~~ 322 (325)
.++.++++.+|++|||+..||||+.+++++.+.. .++.++ |.++.|. ++++.+|| |+++|+++|+++
T Consensus 507 ~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~-gi~d~f~~~g~~~~l~~~~Gl-~~~~I~~~i~~~ 579 (581)
T PRK12315 507 EKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNY-GAKKEFNDRVPVEELYKRNHL-TPEQIVEDILSV 579 (581)
T ss_pred HHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEe-cCCCCCCCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 8887778889999999999999999999998752 467777 8877665 46788999 999999999998
Q ss_pred hh
Q psy8699 323 TR 324 (325)
Q Consensus 323 ~~ 324 (325)
++
T Consensus 580 l~ 581 (581)
T PRK12315 580 LK 581 (581)
T ss_pred hC
Confidence 74
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.6e-54 Score=433.27 Aligned_cols=287 Identities=19% Similarity=0.317 Sum_probs=247.5
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.+.++|.++++++++++++++|+..++ .+..|.++| |+||+|+||+||+|+++|+|+|++|++||++ +|++|++|
T Consensus 284 ~~~~~L~~~~~~~~~vv~~~adl~~~~---~~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~-~f~~F~~r 358 (580)
T PRK05444 284 VFGETLCELAEKDPKIVAITAAMPEGT---GLVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVA-IYSTFLQR 358 (580)
T ss_pred HHHHHHHHHHhhCCCEEEEECCcCCCC---CHHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEE-eeHHHHHH
Confidence 455555668999999999999986432 267799999 9999999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEe-ccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-C
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIR-APCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-K 165 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~-~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~ 165 (325)
++|||++++|++++|.. ++ .++|.++ +|+|||+.+|+++||++||++|++|+|+.|++.+++++++. +
T Consensus 359 a~dQi~~~~a~~~~pv~---------~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~ 429 (580)
T PRK05444 359 AYDQVIHDVALQNLPVT---------FAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDD 429 (580)
T ss_pred HHHHHHHHhhhcCCCEE---------EEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 99999999997665442 22 2345555 59999999999999999999999999999999999999975 8
Q ss_pred CcEEEecccccccccccCCC-CCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC
Q psy8699 166 DPCIFFEPKVLYRAAVEDVP-EDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD 244 (325)
Q Consensus 166 ~Pv~i~~~~~l~~~~~~~~~-~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d 244 (325)
+|+|||++|..+. .++ .+.+.+++||++++++|.|++||++|++++.|++|++.|+ +++||+++|++|||
T Consensus 430 ~P~~ir~~r~~~~----~~~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~-----~~~VId~~~i~p~D 500 (580)
T PRK05444 430 GPIAIRYPRGNGV----GVELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA-----SATVVDARFVKPLD 500 (580)
T ss_pred CcEEEEecCCCCC----CCCCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC-----CCEEEEeCcCCccC
Confidence 9999988875432 221 2246788999999999999999999999999999999984 89999999999999
Q ss_pred HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHH
Q psy8699 245 RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEA 318 (325)
Q Consensus 245 ~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~ 318 (325)
++.+.++++++++++++|||+..||||+++++++.+.++ +.|+.++ |.++.|. ++++++++ ++++|+++
T Consensus 501 ~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~i-g~~d~f~~~g~~~~l~~~~gl-~~~~I~~~ 575 (580)
T PRK05444 501 EELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNL-GLPDEFIDHGSREELLAELGL-DAEGIARR 575 (580)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEE-ecCCcCCCCCCHHHHHHHHCc-CHHHHHHH
Confidence 999999999999999999999999999999999998753 4688888 6655443 35788999 99999999
Q ss_pred HHHHh
Q psy8699 319 VKQIT 323 (325)
Q Consensus 319 i~~~~ 323 (325)
|++++
T Consensus 576 i~~~~ 580 (580)
T PRK05444 576 ILELL 580 (580)
T ss_pred HHhhC
Confidence 99763
No 17
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=9.7e-54 Score=428.03 Aligned_cols=258 Identities=20% Similarity=0.313 Sum_probs=224.0
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.|.++|.+++++|++++++++|++.+ + .+..|.++| |+||||+||+||+|+++|+|||++|+|||++ +|++|++|
T Consensus 362 af~~aL~e~a~~D~~Iv~l~adm~gg-t--~~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~-~fs~Fl~R 436 (641)
T PLN02234 362 CFVEALIAEAEADKDIVAIHAAMGGG-T--MLNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCT-IYSSFMQR 436 (641)
T ss_pred HHHHHHHHHHHHCcCEEEEECCCCCC-c--chHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEE-ehHHHHHH
Confidence 45556666899999999999999743 3 378899999 9999999999999999999999999999999 69999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-CCC
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK-DKD 166 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~-~~~ 166 (325)
+||||+++++++++|+. +++ .+.|.+| +|+|||+.+|++++|++||++|++|+|+.|++.++++++. .++
T Consensus 437 A~DQI~~dva~~~lpV~-------~v~-~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~ 508 (641)
T PLN02234 437 AYDQVVHDVDLQKLPVR-------FAI-DRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDR 508 (641)
T ss_pred HHHHHHHHHhhcCCCEE-------EEE-eCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999998777653 112 2345555 6999999999999999999999999999999999999886 469
Q ss_pred cEEEecccccccccccCCCC--CCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC
Q psy8699 167 PCIFFEPKVLYRAAVEDVPE--DYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD 244 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d 244 (325)
|+|||+||..+... .++. .++.+++||++++++|.|++||++|++++.|++|++.|+++ ||+++|||+++++|||
T Consensus 509 Pv~ir~~R~~~~~~--~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~-GI~v~VId~rsikPlD 585 (641)
T PLN02234 509 PSCFRYHRGNGIGV--SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSER-GLKITVADARFCKPLD 585 (641)
T ss_pred CEEEEeeccccccc--ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEecCCcCCCC
Confidence 99999998654221 1221 13467899999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhcc
Q psy8699 245 RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCF 283 (325)
Q Consensus 245 ~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~ 283 (325)
.+.+.++.++.+.||++|||.. ||||++|++++.+.+.
T Consensus 586 ~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~ 623 (641)
T PLN02234 586 VALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGL 623 (641)
T ss_pred HHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCC
Confidence 9998887777888889999976 9999999999998764
No 18
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.1e-47 Score=387.93 Aligned_cols=283 Identities=15% Similarity=0.097 Sum_probs=221.3
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCccc--ccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCeEEEEeccccc
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVF--RCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAV-SGATAIAEIQFADY 85 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~--~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~-~G~~p~~~it~~~F 85 (325)
.+.++|.++++.+|+++++++|+..++.. +....|.++| |+|||++||+||+|+++|+|||+ .|++||++ ||++|
T Consensus 360 ~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~-tf~~F 437 (663)
T PRK12753 360 ASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYTA-TFLMF 437 (663)
T ss_pred HHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEEEE-ehHHH
Confidence 55667777999999999999999754321 1126799999 89999999999999999999999 78999999 89999
Q ss_pred HHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 86 IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 86 ~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
++|++||||+ .|++++|+..+. ++.|. .| +|+|||+++|+++||.+||++|++|+|++|++.+++++++
T Consensus 438 ~~r~~~qir~-~a~~~l~V~~v~--------thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al~ 508 (663)
T PRK12753 438 VEYARNAARM-AALMKARQIMVY--------THDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIE 508 (663)
T ss_pred HHHHHHHHHH-HHhcCCCeEEEE--------eCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHHh
Confidence 9999999996 597777653222 22333 34 6999999999999999999999999999999999999998
Q ss_pred -CCCcEEEecccccccccccCCCCCC---cccCCCceeEeeeC---CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEe
Q psy8699 164 -DKDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILVAG---TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 164 -~~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~~g---~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~ 236 (325)
.++|+|||++ |.+.+.++... ..+..|+ ++++++ .|++||++|+++.+|++|++.|+++ |++++||+
T Consensus 509 ~~~gP~~irl~----R~~~~~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~-gi~~~Vv~ 582 (663)
T PRK12753 509 RHNGPTALILS----RQNLAQQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAE-GRNVRVVS 582 (663)
T ss_pred cCCCCEEEEec----CCCCCCCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhc-CCCcEEEE
Confidence 5899999555 45555444321 2355665 778875 3999999999999999999999998 99999999
Q ss_pred cccccCCCHHHH--HHHHhc--cCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC-----CCCccccccc
Q psy8699 237 LVSILPWDRETV--FQSARK--TGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD-----TPFPHIFEPF 307 (325)
Q Consensus 237 ~~~l~P~d~~~l--~~~~~~--~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~-----~~~~~~~~~~ 307 (325)
++|++|||.+.+ ++.+.. ..+.|++|+|. +..++++. +.+..++ |.+ ++..++++++
T Consensus 583 ~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~-----~~~~~~~~--------~~~~~~i-Gvd~Fg~sg~~~~l~~~~ 648 (663)
T PRK12753 583 MPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI-----ADYWYKYV--------GLKGAII-GMTGFGESAPADKLFPFF 648 (663)
T ss_pred CCcCCccchhHHHHHHhhcccccceEEEEccCh-----HHHHHHHc--------CCCCeEE-EeCCCcCcCCHHHHHHHh
Confidence 999999999976 322222 12359999982 22222221 2244445 553 2333678999
Q ss_pred CCCCHHHHHHHHHHHh
Q psy8699 308 YIPDKWRCLEAVKQIT 323 (325)
Q Consensus 308 ~l~~~~~I~~~i~~~~ 323 (325)
|| |+++|++++++++
T Consensus 649 Gl-t~~~Iv~~i~~~~ 663 (663)
T PRK12753 649 GF-TVENIVAKAKKLL 663 (663)
T ss_pred CC-CHHHHHHHHHHhC
Confidence 99 9999999998864
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.3e-47 Score=389.63 Aligned_cols=280 Identities=14% Similarity=0.078 Sum_probs=223.7
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchh-----HHHHhCCCceeechhhHHHHHHHHHHHhc-cCCeEEEEecc
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLG-----LQEKYGKHRVFNTPLSEQGIVGFGIGLAV-SGATAIAEIQF 82 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~-----~~~~~~p~r~~~~gIaE~~~v~~a~GlA~-~G~~p~~~it~ 82 (325)
.+.++|.++++.+++++++++|+..++. +.. |.++| |+||||+||+||+|+++|+|+|+ .|++||++ ||
T Consensus 354 ~~g~~L~~la~~~p~iv~lsaDl~~s~~---~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~-tf 428 (653)
T TIGR00232 354 YSQNVLNAIANVLPELLGGSADLAPSNL---TKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGFKPYGG-TF 428 (653)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCC---cccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCCeEEEE-Eh
Confidence 4666777789999999999999975432 332 88999 89999999999999999999999 68999999 89
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
++|++|+++|||.. |++++|+..+ .++.|. .| +|+|||+.+|+++||++||++|++|+|+.|++.++++
T Consensus 429 ~~F~~r~~~~ir~~-a~~~lpV~~v--------~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~ 499 (653)
T TIGR00232 429 LMFVDYARPAIRLA-ALMKLPVIYV--------YTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKY 499 (653)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEE--------EeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999855 8777655322 122232 34 5999999999999999999999999999999999999
Q ss_pred hH-hCCCcEEEecccccccccccCCCCCC-cccCCCceeEe--eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEe
Q psy8699 161 CI-KDKDPCIFFEPKVLYRAAVEDVPEDY-YELPLDKADIL--VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 161 a~-~~~~Pv~i~~~~~l~~~~~~~~~~~~-~~~~~gk~~~~--~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~ 236 (325)
++ +.++|+|||++| .+.+.++..+ ..++.|+ +++ ++|.|++||++|+++.+|++|++.|+++ ||+++||+
T Consensus 500 a~~~~~gP~~irl~r----~~~~~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~-Gi~~~VI~ 573 (653)
T TIGR00232 500 ALESQDGPTALILSR----QNLPQLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAE-NIKVRVVS 573 (653)
T ss_pred HHhcCCCcEEEEEcC----CccCCCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhc-CCcEEEEe
Confidence 99 568999996665 3434343322 3566776 667 5789999999999999999999999998 99999999
Q ss_pred cccccCCCHHH---HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEccc-----CCCCcccccccC
Q psy8699 237 LVSILPWDRET---VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGY-----DTPFPHIFEPFY 308 (325)
Q Consensus 237 ~~~l~P~d~~~---l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~-----~~~~~~~~~~~~ 308 (325)
++|++|||++. +.+.+++++.+|++|||+. +||. ... . ....++ |. .++..++++++|
T Consensus 574 ~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~----~~~---~-----~~~~~i-gvd~fg~sg~~~~L~~~~G 639 (653)
T TIGR00232 574 MPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY----KYA---G-----LVGAIL-GMDSFGESAPGDKLFEEFG 639 (653)
T ss_pred cccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH----Hhc---C-----CcceEE-EecCCcCCCCHHHHHHHhC
Confidence 99999997754 7777777788999999965 4552 111 1 101233 44 333346789999
Q ss_pred CCCHHHHHHHHHHHh
Q psy8699 309 IPDKWRCLEAVKQIT 323 (325)
Q Consensus 309 l~~~~~I~~~i~~~~ 323 (325)
| |+++|+++|++++
T Consensus 640 l-t~e~I~~~i~~~~ 653 (653)
T TIGR00232 640 F-TVENVVAKAKKLL 653 (653)
T ss_pred C-CHHHHHHHHHHhC
Confidence 9 9999999998864
No 20
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=1.6e-47 Score=388.96 Aligned_cols=280 Identities=16% Similarity=0.156 Sum_probs=224.8
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHH------HHhCCCceeechhhHHHHHHHHHHHhccC-CeEEEEe
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQ------EKYGKHRVFNTPLSEQGIVGFGIGLAVSG-ATAIAEI 80 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~------~~~~p~r~~~~gIaE~~~v~~a~GlA~~G-~~p~~~i 80 (325)
..++++|.+++++|++++++++|++.+.. +..+. ++| |+||+|+||+||+|+++|+|+|+.| ++||++
T Consensus 323 ~a~~~~l~~l~~~~~~v~vl~~D~~~~~~---~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~- 397 (624)
T PRK05899 323 KASGKALNALAKALPELVGGSADLAGSNN---TKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGFIPFGG- 397 (624)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCccccC---cccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCCeEEEE-
Confidence 35556666689999999999999974321 33443 578 8999999999999999999999999 999999
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLL 158 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~ 158 (325)
||++|+.|++|||++. ++++.|. +++.++.|. .| +|+|||+.+|+++|+++||++|++|+|++|++.++
T Consensus 398 t~~~F~~r~~~qir~~-~~~~~pv--------~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l 468 (624)
T PRK05899 398 TFLVFSDYARNAIRLA-ALMKLPV--------IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAW 468 (624)
T ss_pred EcHHHHHHHHHHHHHH-HhcCCCE--------EEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHH
Confidence 8999999999999974 7554433 223345565 34 69999999999999999999999999999999999
Q ss_pred HHhHhC-CCcEEEecccccccccccCCCCC--CcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEE
Q psy8699 159 LSCIKD-KDPCIFFEPKVLYRAAVEDVPED--YYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVI 235 (325)
Q Consensus 159 ~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~--~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi 235 (325)
+++++. ++|+|||++| ...+.++.. .+.++.|+ +++++|.|++||++|+++++|++|++.|+++ ||+++||
T Consensus 469 ~~a~~~~~~P~~ir~~r----~~~~~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~-gi~~~VI 542 (624)
T PRK05899 469 KYALERKDGPSALVLTR----QNLPVLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAE-GIKVRVV 542 (624)
T ss_pred HHHHHcCCCCEEEEEeC----CCCCCcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 999997 8999997765 333333322 25678886 8889999999999999999999999999998 9999999
Q ss_pred ecccccCCCHHH---HHHHH-hccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------cccc
Q psy8699 236 DLVSILPWDRET---VFQSA-RKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFE 305 (325)
Q Consensus 236 ~~~~l~P~d~~~---l~~~~-~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~ 305 (325)
+++|++|||.++ +...+ .....++++|++. .+|| ..++ +.++.++ |.++ |+ ++++
T Consensus 543 d~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~-~~g~----~~~~--------~~~~~~i-Gv~~-f~~~g~~~~l~~ 607 (624)
T PRK05899 543 SMPSTELFDEQDAAYKESVLPAAVTARVAVEAGV-ADGW----YKYV--------GLDGKVL-GIDT-FGASAPADELFK 607 (624)
T ss_pred ECCCcchhccCcHHHHhccccccccceEEEccCC-ccch----hhhc--------CCCceEE-ECCC-CCCCCCHHHHHH
Confidence 999999999983 43444 3345677777764 4666 1221 2355667 7777 65 5678
Q ss_pred ccCCCCHHHHHHHHHHHh
Q psy8699 306 PFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 306 ~~~l~~~~~I~~~i~~~~ 323 (325)
++|| |+++|+++|++++
T Consensus 608 ~~gl-~~~~I~~~i~~~~ 624 (624)
T PRK05899 608 EFGF-TVENIVAAAKELL 624 (624)
T ss_pred HhCC-CHHHHHHHHHHhC
Confidence 9999 9999999999864
No 21
>KOG0523|consensus
Probab=100.00 E-value=1.4e-47 Score=368.87 Aligned_cols=294 Identities=19% Similarity=0.246 Sum_probs=239.5
Q ss_pred CccchHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCC-eEEEEeccc
Q psy8699 5 GYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGA-TAIAEIQFA 83 (325)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~-~p~~~it~~ 83 (325)
..+..+.+||..+.+.+|++|.+++|+..++. ++-|.++| |+|||++||+||+|+++|+|+|..|. +||+. ||+
T Consensus 321 Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~---td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~-tf~ 395 (632)
T KOG0523|consen 321 ATRKAFGEALAALAEADPRVIGGSADLKNSTL---TDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFCG-TFA 395 (632)
T ss_pred hHHHHHHHHHHHHhhcCcCeEEEecccCCCch---hhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccchhH-HHH
Confidence 45577888999999999999999999997643 56677899 99999999999999999999999998 99999 899
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCc-cCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCM-AVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g-~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
.|++||+||+|+++-. ..+++.++ ++++ ..| +|+||++++|+++||++||++|++|+|..|+..++..|
T Consensus 396 ~F~trA~dqvr~~a~s----~~~v~~v~-----th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~A 466 (632)
T KOG0523|consen 396 AFFTRAFDQVRMGALS----QANVIYVA-----THDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATA 466 (632)
T ss_pred HHHHHhhhheeehhhc----cCCcEEEE-----EeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHH
Confidence 9999999999976542 23333322 2233 345 69999999999999999999999999999999999999
Q ss_pred HhC-CCcEEEecccccccccccCCCCCCcccCCCcee-EeeeCC-cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecc
Q psy8699 162 IKD-KDPCIFFEPKVLYRAAVEDVPEDYYELPLDKAD-ILVAGT-DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 162 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~-~~~~g~-dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
.+. +.|.++ ++.|+..+.++.. ..+++||+. +++++. |++||++|+++++|++|++.|+++ |++++|+|++
T Consensus 467 a~~~~~p~i~----~~~r~~~~~~~~~-~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~-gi~vrVvd~~ 540 (632)
T KOG0523|consen 467 ANTKGTPSIR----TLSRQNLPIYNNT-EIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSED-GIKVRVVDPF 540 (632)
T ss_pred HhcCCCeeEE----EecCccccccCCC-chhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhc-CceEEEeccc
Confidence 986 559999 5556665555433 357788887 556664 999999999999999999999998 9999999999
Q ss_pred cccCCCHHHHHHHHhccC-cEEEEecCCcCCChHHHHHHHHHhhccccCCCC-eEEEcccC-----CCCcccccccCCCC
Q psy8699 239 SILPWDRETVFQSARKTG-RVIIAHEAPLTSGFGAELAASIQDKCFLSLEAP-IRRVTGYD-----TPFPHIFEPFYIPD 311 (325)
Q Consensus 239 ~l~P~d~~~l~~~~~~~~-~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~-v~~~~g~~-----~~~~~~~~~~~l~~ 311 (325)
+++|||...|+++.+..+ ++.|+|+|...||++..+...... ++.. +..+ +.+ ++-+++++.+|+ +
T Consensus 541 ~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~-----~~~~~~~~~-~~~~~~~sG~p~ell~~fGi-t 613 (632)
T KOG0523|consen 541 TWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGK-----YPGILVPSL-GVDTFGRSGPPPELLKMFGI-T 613 (632)
T ss_pred ceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhcc-----cCCccceee-ccccCCcCCCCHHHHHHhCC-C
Confidence 999999999999888765 667777777667887777665543 2221 2222 333 344578999999 9
Q ss_pred HHHHHHHHHHHhhC
Q psy8699 312 KWRCLEAVKQITRY 325 (325)
Q Consensus 312 ~~~I~~~i~~~~~~ 325 (325)
++.|++++++++.+
T Consensus 614 ~~~Ia~~a~~~~~~ 627 (632)
T KOG0523|consen 614 ARHIAAAALSLIGK 627 (632)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998763
No 22
>PLN02790 transketolase
Probab=100.00 E-value=2.5e-46 Score=380.20 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=227.1
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcc--cccchhHHHH-hCCCceeechhhHHHHHHHHHHHhcc--CCeEEEEecc
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGV--FRCSLGLQEK-YGKHRVFNTPLSEQGIVGFGIGLAVS--GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~--~~~~~~~~~~-~~p~r~~~~gIaE~~~v~~a~GlA~~--G~~p~~~it~ 82 (325)
..+.++|..+.+.+++++++++|+..++. .+.+..|.++ | |+||||+||+||+|+++|+|||++ |++||++ ||
T Consensus 348 ~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~-tf 425 (654)
T PLN02790 348 NLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSSGLIPYCA-TF 425 (654)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE-ec
Confidence 45566777799999999999999974321 1125789888 6 899999999999999999999996 6999999 89
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
++|+.|+++|||. .|++++|+..+..++ +.+ .| +|+|||+++|+++||++||++|++|+|++|+..+++++
T Consensus 426 ~~F~~~~~~~ir~-~al~~lpV~~v~thd------g~~-~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~a 497 (654)
T PLN02790 426 FVFTDYMRAAMRL-SALSEAGVIYVMTHD------SIG-LGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVA 497 (654)
T ss_pred HHHHHHHHHHHHH-HHhcCCCeEEEEECC------cee-ecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHH
Confidence 9999999999985 598887764332221 223 34 69999999999999999999999999999999999999
Q ss_pred Hh-CCCcEEEecccccccccccCCCCC-CcccCCCceeEeeeC-----CcEEEEEechhHHHHHHHHHHHHhhcCCcEEE
Q psy8699 162 IK-DKDPCIFFEPKVLYRAAVEDVPED-YYELPLDKADILVAG-----TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEV 234 (325)
Q Consensus 162 ~~-~~~Pv~i~~~~~l~~~~~~~~~~~-~~~~~~gk~~~~~~g-----~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~v 234 (325)
++ .++|+|||++| +..+.++.. ...++.|+ ++++++ .|++||++|+++.+|++|++.|+++ ||+++|
T Consensus 498 l~~~~gP~~irl~R----~~~~~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~-gi~~~V 571 (654)
T PLN02790 498 VTNRKRPTVLALSR----QKVPNLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKE-GKKVRV 571 (654)
T ss_pred HHcCCCCEEEEecC----CCCCCCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhc-CCceEE
Confidence 98 58999996665 444444432 24577886 666663 7999999999999999999999998 999999
Q ss_pred EecccccCCCHHHHH---HHH-hccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC-----CCCccccc
Q psy8699 235 IDLVSILPWDRETVF---QSA-RKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD-----TPFPHIFE 305 (325)
Q Consensus 235 i~~~~l~P~d~~~l~---~~~-~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~-----~~~~~~~~ 305 (325)
|+++|++|||.+... +.+ ++.+.++++|+|.. +||++. +. .+..++ |.+ ++..++++
T Consensus 572 V~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~~----~~--------~~~~~i-gvd~Fg~sg~~~~l~~ 637 (654)
T PLN02790 572 VSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEKY----VG--------SKGKVI-GVDRFGASAPAGILYK 637 (654)
T ss_pred EecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHHh----cC--------CCceEE-EeCCCcCcCCHHHHHH
Confidence 999999999998743 556 56678999999965 787541 11 122334 442 22236789
Q ss_pred ccCCCCHHHHHHHHHHHh
Q psy8699 306 PFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 306 ~~~l~~~~~I~~~i~~~~ 323 (325)
++|| |+++|+++|++++
T Consensus 638 ~~Gl-t~e~I~~~i~~~~ 654 (654)
T PLN02790 638 EFGF-TVENVVAAAKSLL 654 (654)
T ss_pred HhCC-CHHHHHHHHHHhC
Confidence 9999 9999999998764
No 23
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.2e-46 Score=382.88 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=223.7
Q ss_pred cchHHHHHHHHHhcCCCEEEEcCcCCCCcccc--cchhHHHHhCC-CceeechhhHHHHHHHHHHHhc-cCCeEEEEecc
Q psy8699 7 WTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFR--CSLGLQEKYGK-HRVFNTPLSEQGIVGFGIGLAV-SGATAIAEIQF 82 (325)
Q Consensus 7 ~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~--~~~~~~~~~~p-~r~~~~gIaE~~~v~~a~GlA~-~G~~p~~~it~ 82 (325)
+..+.++|.++.+.+++++.+++|+..++... ....|.++| | +|||++||+||+|+++|+|||+ +|++||++ ||
T Consensus 358 R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~-tf 435 (661)
T PTZ00089 358 RKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGA-TF 435 (661)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcCCCeEEEE-eh
Confidence 34667777779999999999999997543210 014798999 8 8999999999999999999999 89999999 89
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
++|++|++||||. .|++++|+..+..++ +.+...+|+|||+++|+++||++||++|++|+|++|+..++++++
T Consensus 436 ~~Fl~Ra~dqir~-~al~~lpV~~v~thd------g~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~al 508 (661)
T PTZ00089 436 LNFYGYALGAVRL-AALSHHPVIYVATHD------SIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALAL 508 (661)
T ss_pred HHHHHHHHHHHHH-HHhcCCCeEEEEeCC------ceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHHHH
Confidence 9999999999875 598887764332222 223223699999999999999999999999999999999999999
Q ss_pred h-CCCcEEEecccccccccccCCCCCCcccCCCceeEeeeC---CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecc
Q psy8699 163 K-DKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAG---TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 163 ~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g---~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
+ .++|+|||++| +..+.++..+..+..+++++++++ .|++||++|+++.+|++|++.|++ |++++||+++
T Consensus 509 ~~~~gP~~irl~R----~~~~~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~--Gi~~~Vv~~~ 582 (661)
T PTZ00089 509 ANAKTPTILCLSR----QNTPPLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK--ELNVRVVSMP 582 (661)
T ss_pred HcCCCCEEEEecC----CCCCCcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc--CCCeEEEeCC
Confidence 5 68999996664 444444433334445667788864 799999999999999999999976 9999999999
Q ss_pred cccCCCHHHHHHH---Hh-ccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC-----CCcccccccCC
Q psy8699 239 SILPWDRETVFQS---AR-KTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT-----PFPHIFEPFYI 309 (325)
Q Consensus 239 ~l~P~d~~~l~~~---~~-~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~-----~~~~~~~~~~l 309 (325)
|++|||.+.+... +. +...++++|++.. .||.. . ...++ |.++ +..++++++||
T Consensus 583 ~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~-~g~~~---------~------~~~~i-gv~~Fg~sg~~~~l~~~~Gl 645 (661)
T PTZ00089 583 CWELFDQQSEEYQQSVLPSGGVPVLSVEAYVS-FGWEK---------Y------SHVHV-GISGFGASAPANALYKHFGF 645 (661)
T ss_pred CccHHHHHHHHHHHHhcCCCCCceEeHHhhHH-HHHHh---------c------CCeEE-ECCCccccCCHHHHHHHhCC
Confidence 9999999975433 33 3456899999965 33321 0 01233 4554 33367899999
Q ss_pred CCHHHHHHHHHHHhh
Q psy8699 310 PDKWRCLEAVKQITR 324 (325)
Q Consensus 310 ~~~~~I~~~i~~~~~ 324 (325)
|+++|+++|++++.
T Consensus 646 -~~e~I~~~i~~~l~ 659 (661)
T PTZ00089 646 -TVENVVEKARALAA 659 (661)
T ss_pred -CHHHHHHHHHHHhh
Confidence 99999999998764
No 24
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=2.2e-46 Score=378.53 Aligned_cols=289 Identities=13% Similarity=0.122 Sum_probs=226.1
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcc--cccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCeEEEEecccc
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGV--FRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAV-SGATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~--~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~-~G~~p~~~it~~~ 84 (325)
..+.++|.++++.+++++++++|+..++. .+....|.++| |+|||++||+||+|+++|+|+|+ .|++||++ ||++
T Consensus 359 ~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~-tf~~ 436 (663)
T PRK12754 359 KASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTS-TFLM 436 (663)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEEE-eeHH
Confidence 45666777799999999999999974321 11146788899 89999999999999999999999 68999999 9999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
|+.|++||||+. |++++++..+. ++.|. .| +|+|||+++|+++||.+||++|+.|+|+.|+..++++++
T Consensus 437 F~~r~~~qir~~-a~~~l~V~~v~--------th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~ 507 (663)
T PRK12754 437 FVEYARNAVRMA-ALMKQRQVMVY--------THDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGV 507 (663)
T ss_pred HHHHHHHHHHHH-HHcCCCeEEEE--------ECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHH
Confidence 999999999974 97777653322 23333 34 699999999999999999999999999999999999999
Q ss_pred hC-CCcEEEecccccccccccCCCC-C--CcccCCCceeEeeeCC---cEEEEEechhHHHHHHHHHHHHhhcCCcEEEE
Q psy8699 163 KD-KDPCIFFEPKVLYRAAVEDVPE-D--YYELPLDKADILVAGT---DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVI 235 (325)
Q Consensus 163 ~~-~~Pv~i~~~~~l~~~~~~~~~~-~--~~~~~~gk~~~~~~g~---dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi 235 (325)
+. ++|+|| |+.|++.+.++. + ...+..|+ ++++++. |++||++|+++.+|++|++.|+++ ||+++||
T Consensus 508 ~~~~gP~yi----rl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~-Gi~~~Vv 581 (663)
T PRK12754 508 ERQDGPTAL----ILSRQNLAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAE-GVKARVV 581 (663)
T ss_pred hCCCCCEEE----EeCCCCCCCCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhh-CCCcEEE
Confidence 86 799999 555555555542 1 13455665 7788753 999999999999999999999998 9999999
Q ss_pred ecccccCCCHH--HHHHHHhcc--CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCC
Q psy8699 236 DLVSILPWDRE--TVFQSARKT--GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPD 311 (325)
Q Consensus 236 ~~~~l~P~d~~--~l~~~~~~~--~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~ 311 (325)
+++|++|||++ .+++.+... ...+++|.. ...||... +...+. ...+.++ |..++..++++++|+ |
T Consensus 582 s~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~-~~~~w~~~----~~~~~~---~igi~~F-G~Sg~~~~l~~~~G~-t 651 (663)
T PRK12754 582 SMPSTDAFDKQDAAYRESVLPKAVSARVAVEAG-IADYWYKY----VGLNGA---IVGMTTF-GESAPAELLFEEFGF-T 651 (663)
T ss_pred EcCccCcCCCCCHHHHHhcCccccccceEeecc-cccchhhh----ccCCCC---EEEeCCC-CCCCCHHHHHHHhCC-C
Confidence 99999999997 344443332 235889886 44566543 322210 0113334 666666688999999 9
Q ss_pred HHHHHHHHHHHh
Q psy8699 312 KWRCLEAVKQIT 323 (325)
Q Consensus 312 ~~~I~~~i~~~~ 323 (325)
++.|++++++++
T Consensus 652 ~e~I~~~~~~~~ 663 (663)
T PRK12754 652 VDNVVAKAKALL 663 (663)
T ss_pred HHHHHHHHHHhC
Confidence 999999998864
No 25
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=7.8e-44 Score=364.15 Aligned_cols=297 Identities=17% Similarity=0.155 Sum_probs=241.2
Q ss_pred CCCccchHHHHHHHH----H---hcCCCEEEEcCcCCCCc----cc------------------ccchhHHHHhCCCcee
Q psy8699 3 DQGYWTGFFQSSPSQ----L---LSSQGGVLFGEDVGFGG----VF------------------RCSLGLQEKYGKHRVF 53 (325)
Q Consensus 3 ~~~~~~~~~~a~~~~----~---~~~~~vv~~~~D~~~~g----~~------------------~~~~~~~~~~~p~r~~ 53 (325)
+.+++++...|+.++ + +..++||.+.+|...+. .+ .....+++.+ |+||+
T Consensus 485 ~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~i 563 (889)
T TIGR03186 485 AEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQIL 563 (889)
T ss_pred CCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEE
Confidence 456777666666663 2 35667999999987532 00 0134566788 99999
Q ss_pred echhhHHHHHH--HHHHHhcc----CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--C-C
Q psy8699 54 NTPLSEQGIVG--FGIGLAVS----GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--V-G 123 (325)
Q Consensus 54 ~~gIaE~~~v~--~a~GlA~~----G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~-g 123 (325)
|+||+||+|++ +|+|+|++ |++||++ +|++|. +|++|||+++ ++++ .+++.++ +++|. . +
T Consensus 564 e~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~-tya~F~~~Ra~Dqir~a-~~~~---a~v~lvG-----~~aG~tTlg~ 633 (889)
T TIGR03186 564 EEGISEAGAISSWIAAATSYSVHDLPMLPFYI-YYSMFGFQRIGDLIWAA-ADQR---ARGFLIG-----ATSGKTTLGG 633 (889)
T ss_pred EechhhHHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhHhhhHHHHHHHH-hhcC---CCcEEEE-----ECCCccCCCC
Confidence 99999999999 99999999 8899999 899996 9999999977 7544 4445443 45565 2 3
Q ss_pred CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh------CCCcEEEecccccccccc--cCCCCCC-cccCCC
Q psy8699 124 HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK------DKDPCIFFEPKVLYRAAV--EDVPEDY-YELPLD 194 (325)
Q Consensus 124 ~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~------~~~Pv~i~~~~~l~~~~~--~~~~~~~-~~~~~g 194 (325)
+|+|||+.+|+++++.+||++|+.|+|+.|+..+++++++ .++|+|| |++|.+. +.++.++ ..++.|
T Consensus 634 eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Yl----Rl~r~~~~~p~~~~~~~~~~~~g 709 (889)
T TIGR03186 634 EGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL----TVTNENYAQPSLPEDRLDAVRRG 709 (889)
T ss_pred CcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEE----EeCCCCCCCCCcCCCcccchhcc
Confidence 5999999999999999999999999999999999999887 5799999 5555543 5555443 234555
Q ss_pred c--e-eEee----eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC---
Q psy8699 195 K--A-DILV----AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA--- 264 (325)
Q Consensus 195 k--~-~~~~----~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~--- 264 (325)
+ + ++++ +|.|++|+++|.++++|++|++.|++++||+++|++++|+||||++.+. +++++.++++|||
T Consensus 710 i~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~ 787 (889)
T TIGR03186 710 ILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSP 787 (889)
T ss_pred hhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccc
Confidence 4 5 6777 4679999999999999999999999877999999999999999999886 7888999999998
Q ss_pred CcCCChHH-------------HHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHHHh
Q psy8699 265 PLTSGFGA-------------ELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 265 ~~~gglg~-------------~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
++.|||++ .+++++.+. .+.++.++ |.| .|+ ++++.|++ +++.|+.++++++
T Consensus 788 ~v~ggLg~~~~p~va~~D~~~avae~i~~~----~p~~~~~L-G~D-~FG~Sgtr~~Lr~~fgl-da~~Iv~aal~~L 858 (889)
T TIGR03186 788 HVAQALGATQGPVIAATDYVRAVPELIRAY----VPRRYVTL-GTD-GFGRSDTRAALRAFFEV-DRASIVIAALQAL 858 (889)
T ss_pred cHhhhhCCCCCCeeeecchHHHHHHHHHhh----CCCCEEEe-ccC-CCCCcCCHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 89999999 999999875 45688888 774 455 46788999 9999999999876
No 26
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=1.2e-42 Score=355.58 Aligned_cols=299 Identities=14% Similarity=0.072 Sum_probs=239.4
Q ss_pred CCCCccchHHHHHHH----HHhc---CCCEEEEcCcCCCCccc----------------------ccchhHHHHhCCCce
Q psy8699 2 GDQGYWTGFFQSSPS----QLLS---SQGGVLFGEDVGFGGVF----------------------RCSLGLQEKYGKHRV 52 (325)
Q Consensus 2 ~~~~~~~~~~~a~~~----~~~~---~~~vv~~~~D~~~~g~~----------------------~~~~~~~~~~~p~r~ 52 (325)
|+++++++.+.|+.+ +++. +++||.+.+|++.+.-+ .....|++.| |+||
T Consensus 489 ~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf 567 (891)
T PRK09405 489 GSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQI 567 (891)
T ss_pred cCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcE
Confidence 566677665555554 6764 89999999999852110 0125677899 9999
Q ss_pred eechhhHHHHHH--HHHHHhcc----CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--C
Q psy8699 53 FNTPLSEQGIVG--FGIGLAVS----GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--G 123 (325)
Q Consensus 53 ~~~gIaE~~~v~--~a~GlA~~----G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g 123 (325)
+|+||+||+|++ +|+|+|++ |++||++ +|++|. +|++||||++++++. .+++.++ +++|.+ +
T Consensus 568 ~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~-tya~F~~~Ra~Dqir~a~~~~~---~~v~igg-----t~gg~tl~~ 638 (891)
T PRK09405 568 LQEGINEAGAMASWIAAATSYSTHGEPMIPFYI-YYSMFGFQRIGDLAWAAGDQRA---RGFLLGG-----TAGRTTLNG 638 (891)
T ss_pred EEechhhhHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhhhhhHHHHHHHHHHhcC---CCeEEEE-----ECccccCCC
Confidence 999999999999 99999999 8899999 899995 999999999999544 4434322 334432 4
Q ss_pred CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCC--cEEEeccccccccc--ccCCCCCCcccCCCc
Q psy8699 124 HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKD--PCIFFEPKVLYRAA--VEDVPEDYYELPLDK 195 (325)
Q Consensus 124 ~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~--Pv~i~~~~~l~~~~--~~~~~~~~~~~~~gk 195 (325)
+|.+||+.+++.+++.+||++|++|+|+.|+..+++++++ .++ |.|+|. +..+ .+..+ +++.+.++|
T Consensus 639 eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl----~ne~~~~~~~p-e~~~~~igK 713 (891)
T PRK09405 639 EGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITV----MNENYHQPAMP-EGAEEGILK 713 (891)
T ss_pred CcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe----CCCCCCCCCCC-cccccccce
Confidence 6999999999999999999999999999999999999877 555 888954 2111 12222 346788899
Q ss_pred e-eEeeeCC------cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHH---------hccCcEE
Q psy8699 196 A-DILVAGT------DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSA---------RKTGRVI 259 (325)
Q Consensus 196 ~-~~~~~g~------dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~---------~~~~~vi 259 (325)
. +++++|. |++|+++|.++++|++|+++|++++||+++|++++|+||||++.+.... +++..|+
T Consensus 714 g~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~ 793 (891)
T PRK09405 714 GMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVT 793 (891)
T ss_pred EEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhh
Confidence 6 8898865 8999999999999999999999834999999999999999999987765 5667788
Q ss_pred EEecCCcCCChH-------HHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHHHhh
Q psy8699 260 IAHEAPLTSGFG-------AELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 260 vvEe~~~~gglg-------~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
++|+| .||++ +.+++++.+. ++.++.++ |.+ .|+ ++++.|++ |++.|++++++++.
T Consensus 794 t~ee~--~gG~~Vtv~D~~~aVae~la~~----~p~~~~~L-GvD-~FG~SGt~~~L~~~fgl-da~~Iv~aal~~La 862 (891)
T PRK09405 794 QVLKG--AEGPVVAATDYMKLFAEQIRAF----VPGDYVVL-GTD-GFGRSDTREALRRFFEV-DAEYVVVAALKALA 862 (891)
T ss_pred hhhcc--cCCcEEEecchHHHHHHHHHHh----CCCCEEEE-ecC-CCCCCCCHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 88888 57888 8899999875 45688888 774 455 56789999 99999999998763
No 27
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=7.3e-40 Score=336.31 Aligned_cols=283 Identities=14% Similarity=0.118 Sum_probs=216.7
Q ss_pred hHHHHHHHHHhc---CCCEEEEcCcCCCCcc-----------------c-----ccchhHHHHhCCCceeechhhHHHHH
Q psy8699 9 GFFQSSPSQLLS---SQGGVLFGEDVGFGGV-----------------F-----RCSLGLQEKYGKHRVFNTPLSEQGIV 63 (325)
Q Consensus 9 ~~~~a~~~~~~~---~~~vv~~~~D~~~~g~-----------------~-----~~~~~~~~~~~p~r~~~~gIaE~~~v 63 (325)
.|.++|.++++. ++++|.+++|+..+.- | ..+..|+++| |+||+++||+||+|+
T Consensus 508 Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie~GIaEqnm~ 586 (896)
T PRK13012 508 AFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILEEGITEAGAI 586 (896)
T ss_pred HHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEecchhhhhhh
Confidence 455555557766 8999999999873210 0 0023566889 899999999999999
Q ss_pred H--HHHHHhcc----CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCCCCCCCChhHH
Q psy8699 64 G--FGIGLAVS----GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGHGALYHSQSPE 134 (325)
Q Consensus 64 ~--~a~GlA~~----G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~g~th~~~~d~ 134 (325)
+ +|+|+|++ |++||++ +|+.|. +|++||++++++.+ ..+++.+ .++++. .++|+|||+.+++
T Consensus 587 ~~~~AAG~a~a~~G~g~iPf~~-tfs~F~~~R~~Dqir~a~~~~---~~~vlig-----~T~gg~tlg~dG~THQ~~esl 657 (896)
T PRK13012 587 SSWIAAATSYSVHGLPMLPFYI-YYSMFGFQRVGDLIWAAADQR---ARGFLLG-----ATAGRTTLGGEGLQHQDGHSH 657 (896)
T ss_pred HHHHHHHhhHHhcCCCcEEEEE-ehHHHHHHHHHHHHHHHHhcc---cCCeEEE-----EeCcccccCCCCCCCcchHhH
Confidence 9 99999887 6799999 899995 99999999888843 3333322 122332 3469999999999
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C--CCcEEEecccccccccc--cCCCCC-CcccCCCceeEee---eC
Q psy8699 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIK----D--KDPCIFFEPKVLYRAAV--EDVPED-YYELPLDKADILV---AG 202 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~--~~Pv~i~~~~~l~~~~~--~~~~~~-~~~~~~gk~~~~~---~g 202 (325)
+++|.+||++|+.|+|+.|+..+++.+++ . +.|+|| |++|++. +.++.+ +..+..|+ ++++ ++
T Consensus 658 al~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI----rL~r~~~~~p~~~~~~~~~i~kG~-y~l~~~~~g 732 (896)
T PRK13012 658 LLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL----TVMNENYAQPALPEGAEEGILKGM-YRLAAAAEA 732 (896)
T ss_pred HHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE----EecCCCCCCCCCCccchhccccCc-EEEeccCCC
Confidence 99999999999999999999999999873 2 689999 6666554 344433 24555676 5553 35
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChH----H------
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFG----A------ 272 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg----~------ 272 (325)
.|++|+++|+++++|++|+++|+++|||+++|++++|++|||++.+.. |+|+..||++ +
T Consensus 733 ~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~~sy~~~~l 801 (896)
T PRK13012 733 PRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEARVPYVTQCL 801 (896)
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccccccHHHHhh
Confidence 699999999999999999999999889999999999999999997622 5666666666 3
Q ss_pred ---------------HHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHHHhh
Q psy8699 273 ---------------ELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 273 ---------------~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
.+++.+.+. .+.++.++ |.+ .|+ ++++.|++ |++.|++++++++.
T Consensus 802 ~~~~~p~Va~~D~~~aVae~l~~~----~~~~~~~L-GvD-~FG~Sg~~~~L~~~fGl-da~~Iv~aal~~La 867 (896)
T PRK13012 802 AGTRGPVVAATDYVRAVPEQIRAF----VPARYVTL-GTD-GFGRSDTRAALRRFFEV-DRHSIVLAALKALA 867 (896)
T ss_pred cccCCCeEEecchHHHHHHHHHHh----CCCCeEEE-eeC-CCCCCCCHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 455555543 34577777 664 354 57889999 99999999998764
No 28
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=6.3e-39 Score=273.71 Aligned_cols=164 Identities=51% Similarity=0.815 Sum_probs=145.1
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCC-CcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGF-GGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~-~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
.+.++|.+++++|++++++++|++. +|++..+++|+++| |+ ||+|+||+||+++++|+|+|++|++||++++|++|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 5788999999999999999999974 45666689999999 78 999999999999999999999999999987899999
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD 166 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~ 166 (325)
+|++|||++++|+++|..++....+ +++++++|..+.++.+|+++|+++|+++||++|++|+|+.|++.+++++++.++
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~p-v~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~ 159 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVP-IVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD 159 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCC-EEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 9999999999999887666555555 666666665554444578999999999999999999999999999999999999
Q ss_pred cEEEeccc
Q psy8699 167 PCIFFEPK 174 (325)
Q Consensus 167 Pv~i~~~~ 174 (325)
|+++++||
T Consensus 160 P~~~~e~k 167 (167)
T cd07036 160 PVIFLEHK 167 (167)
T ss_pred cEEEEecC
Confidence 99999986
No 29
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-38 Score=304.28 Aligned_cols=297 Identities=14% Similarity=0.110 Sum_probs=239.2
Q ss_pred CCccchHHHHHHHHHhcCCCEEEEcCcCCCCcc--cccchhHH-HHhCCCceeechhhHHHHHHHHHHHhccC-CeEEEE
Q psy8699 4 QGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGV--FRCSLGLQ-EKYGKHRVFNTPLSEQGIVGFGIGLAVSG-ATAIAE 79 (325)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~--~~~~~~~~-~~~~p~r~~~~gIaE~~~v~~a~GlA~~G-~~p~~~ 79 (325)
...+.+..++|..+.+..|+++..++|+..+.. .+....|. +.| ++|++.+||+|++|.+++.|+|++| ++||..
T Consensus 354 ~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~pygg 432 (663)
T COG0021 354 IATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGG 432 (663)
T ss_pred cchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecc
Confidence 345677888898999999999999999985432 11123344 567 7999999999999999999999996 699999
Q ss_pred ecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 80 IQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 80 it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
||..|+.++..++| .++.|++++.+|++++ +.|...+|+|||++++++.+|.+||+.|+.|+|++|+..+++
T Consensus 433 -TFlvFsdY~r~AiR-laALm~l~~~~V~THD------SIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~ 504 (663)
T COG0021 433 -TFLVFSDYARPAVR-LAALMGLPVIYVFTHD------SIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWK 504 (663)
T ss_pred -eehhhHhhhhHHHH-HHHhcCCCeEEEEecC------ceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHH
Confidence 99999999999998 5887888887766654 334444799999999999999999999999999999999999
Q ss_pred HhHhC-CCcEEEecccccccccccCCCCCCcccCCCceeEeee----CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEE
Q psy8699 160 SCIKD-KDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVA----GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEV 234 (325)
Q Consensus 160 ~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~----g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~v 234 (325)
.|++. ++|+++ .+.|++.|.++..+.......++++++ +.|++||++||.+..|++|++.|+++ |++++|
T Consensus 505 ~Al~~~~gPt~L----iltRQnlp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~-~~~vrV 579 (663)
T COG0021 505 YALERKDGPTAL----ILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAE-GIKVRV 579 (663)
T ss_pred HHHhcCCCCeEE----EEecCCCCccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhc-CCceEE
Confidence 99995 999999 888898888865443333445778876 58999999999999999999999988 899999
Q ss_pred EecccccCCCHHH--HHHHHhcc--CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCC
Q psy8699 235 IDLVSILPWDRET--VFQSARKT--GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIP 310 (325)
Q Consensus 235 i~~~~l~P~d~~~--l~~~~~~~--~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~ 310 (325)
|+++|...|+.+. .++++... .+.+.+|-. ...||...+- ..+ ...-+.++ |.+.|...+++++|+
T Consensus 580 VS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~-~~~~W~ky~g----~~g---~~ig~~~F-G~Sap~~~l~~~fGf- 649 (663)
T COG0021 580 VSMPSFELFEKQDEEYRESVLPGAVTARVAIEAG-SALGWYKYVG----LDG---AVIGMDSF-GASAPGDELFKEFGF- 649 (663)
T ss_pred EeccchHHHHcCCHHHHHhhccCCccceEEEEec-cccchhhhcC----CCC---cEEeeccC-cCCCCHHHHHHHhCC-
Confidence 9999999999863 44444433 336889887 4577765431 110 11223345 777777789999999
Q ss_pred CHHHHHHHHHHHhh
Q psy8699 311 DKWRCLEAVKQITR 324 (325)
Q Consensus 311 ~~~~I~~~i~~~~~ 324 (325)
|++.|+++++++++
T Consensus 650 t~e~vv~~~~~~l~ 663 (663)
T COG0021 650 TVENVVAKAKSLLN 663 (663)
T ss_pred CHHHHHHHHHHhhC
Confidence 99999999999874
No 30
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=6.3e-36 Score=253.40 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=134.5
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.+.+++.+++++|++++++++|++.++ .+.+|.++| |+||+|+||+|++|+++|+|+|+.|++||++ +|+.|++|
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~---~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~-~~~~f~~r 76 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGST---GLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVS-TFSFFLQR 76 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCC---CcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEE-ECHHHHHH
Confidence 578999999999999999999998543 489999999 9999999999999999999999999999999 78777899
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEec-cCccC--CCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAV--GHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDK 165 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~--g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~ 165 (325)
++|||++++++++.|. +++. .+|.. ++|+|||+++|+++++++||++|++|+|++|++.+++++++++
T Consensus 77 a~dqi~~~~a~~~~pv---------~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~ 147 (156)
T cd07033 77 AYDQIRHDVALQNLPV---------KFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYD 147 (156)
T ss_pred HHHHHHHHHhccCCCe---------EEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCC
Confidence 9999999999876543 2232 23333 3689999999999999999999999999999999999999999
Q ss_pred CcEEEeccc
Q psy8699 166 DPCIFFEPK 174 (325)
Q Consensus 166 ~Pv~i~~~~ 174 (325)
+|+|+|++|
T Consensus 148 ~P~~irl~~ 156 (156)
T cd07033 148 GPVYIRLPR 156 (156)
T ss_pred CCEEEEeeC
Confidence 999997764
No 31
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.8e-34 Score=297.02 Aligned_cols=267 Identities=20% Similarity=0.304 Sum_probs=220.9
Q ss_pred CccchHHHHHHH----HHhcCCCEEEEcCcCCC---------------CcccccchhHHHHhCCCceeechhhHHHHHHH
Q psy8699 5 GYWTGFFQSSPS----QLLSSQGGVLFGEDVGF---------------GGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGF 65 (325)
Q Consensus 5 ~~~~~~~~a~~~----~~~~~~~vv~~~~D~~~---------------~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~ 65 (325)
++.+.+..|++. +|+++++|+++|+|++. |++|+.+.+|.++||+.|++|++|+|.+.+|+
T Consensus 583 ~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~ 662 (929)
T TIGR00239 583 EKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGF 662 (929)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHH
Confidence 344666666554 89999999999999985 34458899999999999999999999999999
Q ss_pred HHHHhccCCeEE--EEecccccHH---HHHHHHHHH-HhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHH--
Q psy8699 66 GIGLAVSGATAI--AEIQFADYIF---PAFDQIVNE-AAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYF-- 137 (325)
Q Consensus 66 a~GlA~~G~~p~--~~it~~~F~~---ra~dqi~~~-~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~-- 137 (325)
+.|+|+.|.+|+ ++++|++|+. .++|||.+. .++.+++. | +|+|.|+|..|.|+-|||+..+++|
T Consensus 663 ~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~s------g-lv~~~p~G~~g~g~~hsS~~~E~~lql 735 (929)
T TIGR00239 663 EYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMS------G-LVMLLPHGYEGQGPEHSSGRLERFLQL 735 (929)
T ss_pred HHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCcc------C-eEEEecCcCCCCCchhhccCHHHHHHH
Confidence 999999998774 9999999984 789999877 56655543 2 8889999977778899999999999
Q ss_pred cCCCCcEEEeeCCHHHHHHHHH-HhHhC-CCcEEEecccccccccc-----cCCCCCCcccCCCcee-----EeeeCCcE
Q psy8699 138 AHTPGIKVVIPRGPYKAKGLLL-SCIKD-KDPCIFFEPKVLYRAAV-----EDVPEDYYELPLDKAD-----ILVAGTDV 205 (325)
Q Consensus 138 ~~ip~~~v~~P~~~~e~~~~~~-~a~~~-~~Pv~i~~~~~l~~~~~-----~~~~~~~~~~~~gk~~-----~~~~g~dv 205 (325)
.+.|||+|+.|++|.+++.+++ +++++ ++|+++++||.|+|.+. .+++.+++..+++... +.+++.+.
T Consensus 736 ~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~ 815 (929)
T TIGR00239 736 AAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKR 815 (929)
T ss_pred hCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcE
Confidence 7899999999999999999999 79996 99999999999998653 3566555665665321 22345566
Q ss_pred EEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC---cEEEEecCCcCCChHHHHHHHHHhh
Q psy8699 206 TLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG---RVIIAHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~---~vivvEe~~~~gglg~~v~~~l~e~ 281 (325)
+|+++| ++..++++ +.++++ |+++.||++++|+|||.+.|.++++|+. ++|+++|.+.+.|-...+...+.+.
T Consensus 816 vv~~sg-~v~~~l~~-~~~~~~-~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~ 891 (929)
T TIGR00239 816 LVLCSG-KVYYDLHE-QRRKNG-QKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREV 891 (929)
T ss_pred EEEECc-hHHHHHHH-HHHhcC-CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHH
Confidence 677776 66666666 667777 9999999999999999999999999985 8999999989988888888888753
No 32
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.2e-34 Score=299.58 Aligned_cols=266 Identities=21% Similarity=0.288 Sum_probs=222.3
Q ss_pred CccchHHHHHH----HHHhcCCCEEEEcCcCC---------------CCcccccchhHHHHhCCCceeechhhHHHHHHH
Q psy8699 5 GYWTGFFQSSP----SQLLSSQGGVLFGEDVG---------------FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGF 65 (325)
Q Consensus 5 ~~~~~~~~a~~----~~~~~~~~vv~~~~D~~---------------~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~ 65 (325)
++.+.+..|.. .+|++|++|++.|+|++ .|++|+.+.+|.++||+.|++|++|+|.+++|+
T Consensus 581 ~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~ 660 (924)
T PRK09404 581 EKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGF 660 (924)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHH
Confidence 34454544443 48999999999999997 467888899999999999999999999999999
Q ss_pred HHHHhccCCeE--EEEecccccHH---HHHHHHHHHH-hhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcC
Q psy8699 66 GIGLAVSGATA--IAEIQFADYIF---PAFDQIVNEA-AKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAH 139 (325)
Q Consensus 66 a~GlA~~G~~p--~~~it~~~F~~---ra~dqi~~~~-~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ 139 (325)
+.|+|+.|.+| +++++|++|.. .++||+.+.+ ++.+++. + +|+|.|+|..|.|+-|||+..+++|.+
T Consensus 661 ~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------g-lv~~~p~G~~g~g~~hsS~~~E~~l~~ 733 (924)
T PRK09404 661 EYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------G-LVMLLPHGYEGQGPEHSSARLERFLQL 733 (924)
T ss_pred HHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------C-eEEEecCcCCCCChhhhccCHHHHHHh
Confidence 99999999964 99999999984 7899999876 6544432 2 888999997777889999999999966
Q ss_pred C--CCcEEEeeCCHHHHHHHHHHhH-hC-CCcEEEecccccccccc-----cCCCCCCcccCCCceeEeeeCCcE--EEE
Q psy8699 140 T--PGIKVVIPRGPYKAKGLLLSCI-KD-KDPCIFFEPKVLYRAAV-----EDVPEDYYELPLDKADILVAGTDV--TLI 208 (325)
Q Consensus 140 i--p~~~v~~P~~~~e~~~~~~~a~-~~-~~Pv~i~~~~~l~~~~~-----~~~~~~~~~~~~gk~~~~~~g~dv--~ii 208 (325)
. |||+|+.|++|.+++.+|+.++ ++ ++|++|++||.|+|... .+++..++..++++.. .+++.|+ +||
T Consensus 734 ~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv 812 (924)
T PRK09404 734 CAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVL 812 (924)
T ss_pred CCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEE
Confidence 5 7999999999999999999864 66 69999999999998642 2233333334455544 4566788 799
Q ss_pred EechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc---CcEEEEecCCcCCChHHHHHHHHHhh
Q psy8699 209 GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT---GRVIIAHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 209 ~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~l~e~ 281 (325)
|||.++..+++|++.+.. .++.||++++|.|||.+.|.++++|+ +++|+|+|.+.+.|.+..+...+.+.
T Consensus 813 ~~Gk~~~~~~~a~~~~~~---~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~ 885 (924)
T PRK09404 813 CSGKVYYDLLEARRKRGI---DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEV 885 (924)
T ss_pred EcCHHHHHHHHHHHhCCC---CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHH
Confidence 999999999999986543 39999999999999999999999997 48999999999999999999888753
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=5.4e-35 Score=252.95 Aligned_cols=165 Identities=34% Similarity=0.497 Sum_probs=133.3
Q ss_pred ccchHHHHHHH----HHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC--CeEEEE
Q psy8699 6 YWTGFFQSSPS----QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSG--ATAIAE 79 (325)
Q Consensus 6 ~~~~~~~a~~~----~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G--~~p~~~ 79 (325)
+++++++|+.+ ++++|++++++++|++. +++....++...++|+||+|+||+|++|+++|+|+|+.| ++|++.
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~-~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~ 79 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGG-GTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVES 79 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHH-HHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCc-chhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEe
Confidence 34555555555 89999999999999983 344445666777778899999999999999999999999 566666
Q ss_pred ecccccHH----HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHH
Q psy8699 80 IQFADYIF----PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAK 155 (325)
Q Consensus 80 it~~~F~~----ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~ 155 (325)
+|++|+. |+++|+++++++++++. . ++.+.+.+..++|+|||+++|+++|+++||++|++|+|+.|++
T Consensus 80 -~f~~F~~~~q~r~~~~~~~~~~~~~~~v------~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~ 151 (178)
T PF02779_consen 80 -TFADFLTPAQIRAFDQIRNDMAYGQLPV------P-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAK 151 (178)
T ss_dssp -EEGGGGGGGHHHHHHHHHHHHHHHTS-E------E-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHH
T ss_pred -eccccccccchhhhhhhhhhhhccccee------c-ceeecCcccccccccccccccccccccccccccccCCCHHHHH
Confidence 9999998 99999999999776654 2 4455555555579999999999999999999999999999999
Q ss_pred HHHHHhHh--CCCcEEEecccccccc
Q psy8699 156 GLLLSCIK--DKDPCIFFEPKVLYRA 179 (325)
Q Consensus 156 ~~~~~a~~--~~~Pv~i~~~~~l~~~ 179 (325)
.+++++++ +++|+|||++|.+++.
T Consensus 152 ~~l~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 152 GLLRAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HHHHHHHHSSSSSEEEEEEESSEES-
T ss_pred HHHHHHHHhCCCCeEEEEeeHHhCCC
Confidence 99999999 7899999999877653
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96 E-value=6.5e-29 Score=212.92 Aligned_cols=152 Identities=32% Similarity=0.419 Sum_probs=123.9
Q ss_pred chHHHHHHHHHhcCC-CEEEEcCcCCCCcccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCeEEEE
Q psy8699 8 TGFFQSSPSQLLSSQ-GGVLFGEDVGFGGVFRCSLGLQEKYGKH-------RVFNTPLSEQGIVGFGIGLAVSGATAIAE 79 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~-~vv~~~~D~~~~g~~~~~~~~~~~~~p~-------r~~~~gIaE~~~v~~a~GlA~~G~~p~~~ 79 (325)
..+.++|.+++++++ +++++++|++.+.. +. ..+.| |+ ||+|+||+|++++++|+|+|++|++||++
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~---~~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~ 78 (168)
T smart00861 4 KAFGEALAELAERDPERVVVSGADVGGSTG---LD-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVA 78 (168)
T ss_pred HHHHHHHHHHHhhCCCcEEEEehhhCcCcC---CC-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEE
Confidence 357788888998855 99999999975321 12 24455 44 59999999999999999999999999999
Q ss_pred ecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHH
Q psy8699 80 IQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGL 157 (325)
Q Consensus 80 it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~ 157 (325)
+|+.|+.|++||++++++.. +. + ++++.+.|. .| +|+|||+++|+++++++||++|++|+|++|++.+
T Consensus 79 -~~~~f~~~a~~~~~~~~~~~--~~------~-~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~ 148 (168)
T smart00861 79 -IFFTFFDRAKDQIRSDGAMG--RV------P-VVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGL 148 (168)
T ss_pred -eeHHHHHHHHHHHHHhCccc--CC------C-EEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHH
Confidence 79999999999999887732 11 1 445554433 44 4889999999999999999999999999999999
Q ss_pred HHHhHhC-CCcEEEeccc
Q psy8699 158 LLSCIKD-KDPCIFFEPK 174 (325)
Q Consensus 158 ~~~a~~~-~~Pv~i~~~~ 174 (325)
++++++. ++|+|||.++
T Consensus 149 l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 149 LRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHhCCCCCEEEEecC
Confidence 9999975 7899996653
No 35
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.94 E-value=2e-24 Score=205.17 Aligned_cols=287 Identities=12% Similarity=0.116 Sum_probs=207.0
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
++-++|+.. ....+.+++..-+=.+.+.....+..+.+++ ...|++ ..+|.+++++|.|+|++|.|.+++ |.++++
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl 83 (352)
T PRK07119 7 MKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTS-SSSPGI 83 (352)
T ss_pred ehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEee-cCcchH
Confidence 455778887 5567999988887776433322223333445 356888 789999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcC-----CCCcEEEeeCCHHHHHHHHHHh
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAH-----TPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~-----ip~~~v~~P~~~~e~~~~~~~a 161 (325)
..+++.|- .++..++|.+ + + ++.|. ++. .|.|+..|+|.-+.+. .-++.+++|+|++|++++..+|
T Consensus 84 ~lm~E~l~-~a~~~e~P~v--~-v--~v~R~--~p~-~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~A 154 (352)
T PRK07119 84 SLKQEGIS-YLAGAELPCV--I-V--NIMRG--GPG-LGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLA 154 (352)
T ss_pred HHHHHHHH-HHHHccCCEE--E-E--EeccC--CCC-CCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHH
Confidence 99999985 6776777653 1 1 33343 332 2447777888765432 3468999999999999999999
Q ss_pred Hh----CCCcEEEecccccccccccC-CCC--------CCccc-CCC--------------------------ce-----
Q psy8699 162 IK----DKDPCIFFEPKVLYRAAVED-VPE--------DYYEL-PLD--------------------------KA----- 196 (325)
Q Consensus 162 ~~----~~~Pv~i~~~~~l~~~~~~~-~~~--------~~~~~-~~g--------------------------k~----- 196 (325)
++ .+-||+++.+.++.+...+. +++ +++.+ +.+ |.
T Consensus 155 f~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 234 (352)
T PRK07119 155 FDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEE 234 (352)
T ss_pred HHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 98 47899999998776543211 110 00100 000 00
Q ss_pred -----eEe-eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCCh
Q psy8699 197 -----DIL-VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGF 270 (325)
Q Consensus 197 -----~~~-~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~ggl 270 (325)
... .++.|++||+||+++..+++|++.|+++ |+++++++++++||||.+.|.++++++++|+|+|++ .|.|
T Consensus 235 ~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~-Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n--~g~l 311 (352)
T PRK07119 235 NEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREE-GIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS--MGQM 311 (352)
T ss_pred hCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHc-CCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC--ccHH
Confidence 011 1468999999999999999999999998 999999999999999999999999999999999998 3778
Q ss_pred HHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 271 GAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 271 g~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
..++...+.. ..++..+.+.++ -.++++.|.+.++++++
T Consensus 312 ~~ei~~~~~~------~~~~~~i~k~~G---------~~~~~~~i~~~~~~~~~ 350 (352)
T PRK07119 312 VEDVRLAVNG------KKPVEFYGRMGG---------MVPTPEEILEKIKEILG 350 (352)
T ss_pred HHHHHHHhCC------CCceeEEeccCC---------EeCCHHHHHHHHHHHhc
Confidence 8887755421 123333322222 12389999999998874
No 36
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.93 E-value=1.4e-23 Score=200.84 Aligned_cols=283 Identities=12% Similarity=0.123 Sum_probs=202.5
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeEEEEeccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQE---KYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~---~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~ 83 (325)
++-++|+.. ......+++..-+=.+.+.. .+.+.+ ++ ...|+++- +|.+++++|.|+|++|.|.+++ |.+
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPITPsTei---~e~la~~~~~~-~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta-TSg 80 (376)
T PRK08659 7 LQGNEACAEGAIAAGCRFFAGYPITPSTEI---AEVMARELPKV-GGVFIQME-DEIASMAAVIGASWAGAKAMTA-TSG 80 (376)
T ss_pred eehHHHHHHHHHHhCCCEEEEcCCCChHHH---HHHHHHhhhhh-CCEEEEeC-chHHHHHHHHhHHhhCCCeEee-cCC
Confidence 455778887 55678998888777664322 344443 34 25688877 9999999999999999999999 999
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcC----CCCcEEEeeCCHHHHHHHHH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAH----TPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~----ip~~~v~~P~~~~e~~~~~~ 159 (325)
+.+..+++++- .++..++|.+ .+ ++.| .|++.+-+++++|+|....+. --++.|++|+|+||++++..
T Consensus 81 ~Gl~lm~E~~~-~a~~~e~P~V---iv--~~~R--~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~ 152 (376)
T PRK08659 81 PGFSLMQENIG-YAAMTETPCV---IV--NVQR--GGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTI 152 (376)
T ss_pred CcHHHHHHHHH-HHHHcCCCEE---EE--Eeec--CCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHH
Confidence 99999999995 3444555542 11 2334 455545578888888855441 22467999999999999999
Q ss_pred HhHh----CCCcEEEeccccccccccc-------CCC-------C------CCcc-----cC----CC--c---------
Q psy8699 160 SCIK----DKDPCIFFEPKVLYRAAVE-------DVP-------E------DYYE-----LP----LD--K--------- 195 (325)
Q Consensus 160 ~a~~----~~~Pv~i~~~~~l~~~~~~-------~~~-------~------~~~~-----~~----~g--k--------- 195 (325)
.|++ .+.|++++.+.++++...+ .++ . .++. ++ .| .
T Consensus 153 ~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (376)
T PRK08659 153 RAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTH 232 (376)
T ss_pred HHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccc
Confidence 9997 4889999988766543211 000 0 0000 00 01 0
Q ss_pred ---------------------------------eeEee-eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccccc
Q psy8699 196 ---------------------------------ADILV-AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSIL 241 (325)
Q Consensus 196 ---------------------------------~~~~~-~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~ 241 (325)
..... +++|++||+||+++..+++|++.|+++ |++++++++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~-G~~v~~l~~~~l~ 311 (376)
T PRK08659 233 DERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREE-GIKVGLFRLITVW 311 (376)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhc-CCceEEEEeCeec
Confidence 00111 468999999999999999999999998 9999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHHH
Q psy8699 242 PWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 242 P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~ 321 (325)
|||.+.|.+.+++.++|+|||+| .|.+..++...+.. ..++..+.+.++. .++++.|++.+++
T Consensus 312 Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~------~~~~~~i~~~~G~---------~~~~~ei~~~~~~ 374 (376)
T PRK08659 312 PFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG------RAKVEGINKIGGE---------LITPEEILEKIKE 374 (376)
T ss_pred CCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC------CCCeeEEeccCCC---------cCCHHHHHHHHHh
Confidence 99999999999999999999999 47777777665531 1123344333321 2389999998887
Q ss_pred H
Q psy8699 322 I 322 (325)
Q Consensus 322 ~ 322 (325)
+
T Consensus 375 ~ 375 (376)
T PRK08659 375 V 375 (376)
T ss_pred h
Confidence 5
No 37
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.93 E-value=1.8e-23 Score=199.74 Aligned_cols=281 Identities=10% Similarity=0.045 Sum_probs=204.0
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeEEEEeccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQE---KYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~---~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~ 83 (325)
++-++|+.. ....+.+++..-+=...+.. .+.+.+ ++ ...|+++ -+|.+++++|+|+|++|.|.+++ |.+
T Consensus 6 ~~GNeAiA~ga~~ag~~~~a~YPITPsTeI---~e~la~~~~~~-g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~ta-TSg 79 (375)
T PRK09627 6 STGNELVAKAAIECGCRFFGGYPITPSSEI---AHEMSVLLPKC-GGTFIQM-EDEISGISVALGASMSGVKSMTA-SSG 79 (375)
T ss_pred echHHHHHHHHHHhCCCEEEEeCCCChhHH---HHHHHHHHHHc-CCEEEEc-CCHHHHHHHHHHHHhhCCCEEee-cCC
Confidence 456788887 67889999888877664322 344444 34 2346665 59999999999999999999999 999
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHc-----CCCCcEEEeeCCHHHHHHHH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFA-----HTPGIKVVIPRGPYKAKGLL 158 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~-----~ip~~~v~~P~~~~e~~~~~ 158 (325)
+.+..+.+++- .++.+++|.. .+ ++.| .|++++-++...|+|....+ ..|.+ |++|+|++|++++.
T Consensus 80 ~G~~lm~E~~~-~a~~~e~P~V---~~--~~~R--~GpstG~p~~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t 150 (375)
T PRK09627 80 PGISLKAEQIG-LGFIAEIPLV---IV--NVMR--GGPSTGLPTRVAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTET 150 (375)
T ss_pred chHHHHhhHHH-HHHhccCCEE---EE--Eecc--CCCcCCCCCccchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHH
Confidence 99988899986 4555555542 11 2233 46655567788889986555 35555 99999999999999
Q ss_pred HHhHh----CCCcEEEeccccccccccc-------CCC---------C---CCc-ccCC---------------------
Q psy8699 159 LSCIK----DKDPCIFFEPKVLYRAAVE-------DVP---------E---DYY-ELPL--------------------- 193 (325)
Q Consensus 159 ~~a~~----~~~Pv~i~~~~~l~~~~~~-------~~~---------~---~~~-~~~~--------------------- 193 (325)
.+|++ .+.||+++.+.++++...+ .++ . ++| .+++
T Consensus 151 ~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 230 (375)
T PRK09627 151 VRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTG 230 (375)
T ss_pred HHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecC
Confidence 99997 4889999998766543211 010 0 000 0000
Q ss_pred ----------------------------------CceeEee-eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecc
Q psy8699 194 ----------------------------------DKADILV-AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 194 ----------------------------------gk~~~~~-~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
..+.... +++|++||+|||+...+++|++.|+++ |+++++++++
T Consensus 231 ~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~-G~kvg~l~~~ 309 (375)
T PRK09627 231 LHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREE-GIKVGLFRPI 309 (375)
T ss_pred ccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhc-CCeEEEEEeC
Confidence 0000111 357899999999999999999999999 9999999999
Q ss_pred cccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHH
Q psy8699 239 SILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEA 318 (325)
Q Consensus 239 ~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~ 318 (325)
+++|||.+.|++.+++.++|+|+|++. |.|..++.+.+.. .++..+.+.++. -+ +++.|.+.
T Consensus 310 ~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~-------~~~~~i~~~~G~--------~~-~~~~i~~~ 371 (375)
T PRK09627 310 TLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR-------DDFHFLGKANGR--------PI-SPSEIIAK 371 (375)
T ss_pred eEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC-------CCceEEeeeCCC--------cC-CHHHHHHH
Confidence 999999999999999999999999995 8888888876631 123333232221 13 89999998
Q ss_pred HHHH
Q psy8699 319 VKQI 322 (325)
Q Consensus 319 i~~~ 322 (325)
++++
T Consensus 372 i~~~ 375 (375)
T PRK09627 372 VKEL 375 (375)
T ss_pred HHhC
Confidence 8864
No 38
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.92 E-value=3.8e-23 Score=209.49 Aligned_cols=285 Identities=16% Similarity=0.117 Sum_probs=205.9
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhccCCeEEEEecccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGK--HRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p--~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~ 84 (325)
++-.+|+.. ....+.+++..-+=...+. ..+.+.+.. + +-++++..+|.+++++|+|+|++|.|.+++ |.++
T Consensus 5 ~~GneA~A~g~~~ag~~~~~~YPiTP~t~---i~e~l~~~~-~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~-ts~~ 79 (595)
T TIGR03336 5 LLGNEAIARGALEAGVGVAAAYPGTPSSE---ITDTLAKVA-KRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCT-MKHV 79 (595)
T ss_pred ecHHHHHHHHHHHcCCEEEEecCCCCHHH---HHHHHHHhh-hhccEEEEECcCHHHHHHHHHHHHhcCcceEEE-ccCC
Confidence 355678877 5677888877777665322 244455443 3 357788889999999999999999999999 9999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK- 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~- 163 (325)
.+..+.|+|.. ++.+..+. + +++....+ .|.++|+..|+|.-+.+. .++.|++|+|++|++++..+|++
T Consensus 80 Gl~~~~e~l~~-~~~~g~~~------~-iV~~~~~~-~gp~~~~~~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~l 149 (595)
T TIGR03336 80 GLNVAADPLMT-LAYTGVKG------G-LVVVVADD-PSMHSSQNEQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFEL 149 (595)
T ss_pred chhhhHHHhhh-hhhhcCcC------c-eEEEEccC-CCCccchhhHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHH
Confidence 99999999974 66433322 1 22221112 234567777778655544 47789999999999999999997
Q ss_pred ---CCCcEEEeccccccccccc----CCCC----CCcccCCC------------------c------------ee-Eeee
Q psy8699 164 ---DKDPCIFFEPKVLYRAAVE----DVPE----DYYELPLD------------------K------------AD-ILVA 201 (325)
Q Consensus 164 ---~~~Pv~i~~~~~l~~~~~~----~~~~----~~~~~~~g------------------k------------~~-~~~~ 201 (325)
++-||+++.+.++.+...+ +.+. .++..+.. | +. +..+
T Consensus 150 ae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (595)
T TIGR03336 150 SEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEIN 229 (595)
T ss_pred HHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccC
Confidence 5899999998877654321 1100 00000000 0 01 1124
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhh
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~ 281 (325)
+.|++||++|+++..+++|++.| |++++|++++++||||++.|.+.++++++|+|+|||. +++++.+...+.+.
T Consensus 230 ~~di~iv~~G~~~~~a~ea~~~~----Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~--~~~~~~~~~~~~~~ 303 (595)
T TIGR03336 230 GAKIGVIASGIAYNYVKEALERL----GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELE--PVVEEQVKALAGTA 303 (595)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHc----CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCc--cHHHHHHHHHHHhc
Confidence 58999999999999999987764 9999999999999999999999999999999999996 56666555544432
Q ss_pred ccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHHHH
Q psy8699 282 CFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQI 322 (325)
Q Consensus 282 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~ 322 (325)
+.++.++ |.++.|.. +..+| |++.|.++++++
T Consensus 304 -----~~~v~~~-G~~d~fi~--~~~~L-d~~~i~~~i~~~ 335 (595)
T TIGR03336 304 -----GLNIKVH-GKEDGFLP--REGEL-NPDIVVNALAKF 335 (595)
T ss_pred -----CCCeEEe-cccCCccC--cccCc-CHHHHHHHHHHh
Confidence 2367777 88876655 56778 999999999875
No 39
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.89 E-value=4.8e-21 Score=183.78 Aligned_cols=248 Identities=15% Similarity=0.112 Sum_probs=183.0
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhCC----CceeechhhHHHHHHHHHHHhccCCeEEEEecc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGK----HRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p----~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~ 82 (325)
++-++|+.. ....+.+++..-+=.+.+. ..+.+.+.. + +-.+-..-+|.+++++|.|+|++|.|.+++ |.
T Consensus 6 l~GNeAiA~ga~~ag~~~~a~YPITPsTe---i~e~la~~~-~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaRa~Ta-TS 80 (390)
T PRK08366 6 VSGNYAAAYAALHARVQVVAAYPITPQTS---IIEKIAEFI-ANGEADIQYVPVESEHSAMAACIGASAAGARAFTA-TS 80 (390)
T ss_pred eeHHHHHHHHHHHhCCCEEEEECCCChhH---HHHHHHHHh-hCCCCCeEEEEeCCHHHHHHHHHHHHhhCCCeEee-eC
Confidence 455778887 4578999988888776432 244455444 4 123334469999999999999999999999 99
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
++.+..+.|.|. .++.+++|.+ .+ ++.| .++ +..+++..|+|+-..+.- ++.+++|+|+||+.++...|+
T Consensus 81 g~Gl~lm~E~l~-~aa~~~lPiV---i~--~~~R--~~p-~~~~~~~~q~D~~~~~d~-g~i~~~~~~~QEa~d~t~~Af 150 (390)
T PRK08366 81 AQGLALMHEMLH-WAAGARLPIV---MV--DVNR--AMA-PPWSVWDDQTDSLAQRDT-GWMQFYAENNQEVYDGVLMAF 150 (390)
T ss_pred cccHHHHhhHHH-HHHhcCCCEE---EE--Eecc--CCC-CCCCCcchhhHHHHHhhc-CEEEEeCCCHHHHHHHHHHHH
Confidence 999999999996 6777777642 11 3334 355 456888889997655444 889999999999999999999
Q ss_pred h----CCCcEEEecccc-ccccccc-C----------CC-----------CCCcc---c-----------C---------
Q psy8699 163 K----DKDPCIFFEPKV-LYRAAVE-D----------VP-----------EDYYE---L-----------P--------- 192 (325)
Q Consensus 163 ~----~~~Pv~i~~~~~-l~~~~~~-~----------~~-----------~~~~~---~-----------~--------- 192 (325)
+ .+.|++++.+.. +.+...+ + ++ +++.. . .
T Consensus 151 ~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~ 230 (390)
T PRK08366 151 KVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAKAMEEAK 230 (390)
T ss_pred HHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhHHHHhHH
Confidence 7 489999998752 2221100 0 00 00000 0 0
Q ss_pred -------------CCcee--Eee----eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh
Q psy8699 193 -------------LDKAD--ILV----AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR 253 (325)
Q Consensus 193 -------------~gk~~--~~~----~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~ 253 (325)
+|+.+ .+. +++|++||+||++...+++|++.|+++ |++++++++++++|||.+.|++.++
T Consensus 231 ~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~-G~kvg~l~i~~~~PfP~~~i~~~l~ 309 (390)
T PRK08366 231 KVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKE-GYKVGYAKVRWFRPFPKEELYEIAE 309 (390)
T ss_pred HHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhc-CCceeeEEEeeecCCCHHHHHHHHh
Confidence 11110 011 357899999999999999999999999 9999999999999999999999999
Q ss_pred ccCcEEEEecCCcCCChH
Q psy8699 254 KTGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 254 ~~~~vivvEe~~~~gglg 271 (325)
+.++|+|+|++...|++|
T Consensus 310 ~~k~ViVvE~n~~~Gq~g 327 (390)
T PRK08366 310 SVKGIAVLDRNFSFGQEG 327 (390)
T ss_pred cCCEEEEEeCCCCCCccc
Confidence 999999999997667744
No 40
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.89 E-value=1.3e-20 Score=182.42 Aligned_cols=291 Identities=13% Similarity=0.073 Sum_probs=204.8
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhCCC-----ceeechhhHHHHHHHHHHHhccCCeEEEEec
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-----RVFNTPLSEQGIVGFGIGLAVSGATAIAEIQ 81 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-----r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it 81 (325)
++-++|+.. ....+.+++..-+=.+.+. ..+.+.+.. ++ .|+++ -+|.+++++|.|+|++|.|.+++ |
T Consensus 13 ~~GNeAiA~ga~~Ag~~~~a~YPITPsTe---I~e~la~~~-~~g~~~~~~vq~-E~E~~A~~~~~GAs~aGaRa~Ta-T 86 (407)
T PRK09622 13 WDGNTAASNALRQAQIDVVAAYPITPSTP---IVQNYGSFK-ANGYVDGEFVMV-ESEHAAMSACVGAAAAGGRVATA-T 86 (407)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCCCccH---HHHHHHHHh-hCCCcCcEEEee-ccHHHHHHHHHHHHhhCcCEEee-c
Confidence 355778887 4568999998888776422 245555544 43 46665 49999999999999999999999 9
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
.++.+..+.|.|. .++.+++|.+ .+ ++.| +++. .-.++..+.|.-..+ ..++.+++|+|+||+.++...|
T Consensus 87 S~~Gl~lm~E~l~-~aa~~~~P~V---~~--~~~R--~~~~-~~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~A 156 (407)
T PRK09622 87 SSQGLALMVEVLY-QASGMRLPIV---LN--LVNR--ALAA-PLNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMA 156 (407)
T ss_pred CcchHHHHhhHHH-HHHHhhCCEE---EE--Eecc--ccCC-CcCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHH
Confidence 9999999999996 6777777642 11 2334 2333 256677777775444 5679999999999999999999
Q ss_pred HhC------CCcEEEeccccc-cccc--ccC---------CCC-CCc--------c--cC--------------------
Q psy8699 162 IKD------KDPCIFFEPKVL-YRAA--VED---------VPE-DYY--------E--LP-------------------- 192 (325)
Q Consensus 162 ~~~------~~Pv~i~~~~~l-~~~~--~~~---------~~~-~~~--------~--~~-------------------- 192 (325)
++. +.|++++.+..+ .+.. ... .++ .++ + ..
T Consensus 157 f~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (407)
T PRK09622 157 FKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALM 236 (407)
T ss_pred HHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhh
Confidence 982 789999998764 3321 000 000 000 0 00
Q ss_pred ----------------CCc----eeEe-eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH
Q psy8699 193 ----------------LDK----ADIL-VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS 251 (325)
Q Consensus 193 ----------------~gk----~~~~-~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~ 251 (325)
.|. .... .+++|++||++|+++..+++|++.|+++ |+++++++++++||||.+.|.+.
T Consensus 237 ~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~-G~kvgvi~~r~~~Pfp~~~l~~~ 315 (407)
T PRK09622 237 SSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKE-GIKAGVATIRVLRPFPYERLGQA 315 (407)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhC-CCCeEEEEeeEhhhCCHHHHHHH
Confidence 000 0000 1468999999999999999999999998 99999999999999999999999
Q ss_pred HhccCcEEEEecCCcCCChHHHHHHHHHhhccccC-CCCe-E-EEcccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 252 ARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSL-EAPI-R-RVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 252 ~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~-~~~v-~-~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
++++++|+|+|++...||+|..+.+.+.--..... ..|+ . .+.|..+ ..++++.|.+.++++.+
T Consensus 316 l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~v~~~~~g~gG---------~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 316 LKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPVVSNYIYGLGG---------RDMTIAHLCEIFEELNE 382 (407)
T ss_pred HhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCceEeeeEECCCC---------CCCCHHHHHHHHHHHHh
Confidence 99999999999999999998866655543210000 0222 1 1123221 13488999988887653
No 41
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.89 E-value=5e-21 Score=192.32 Aligned_cols=256 Identities=16% Similarity=0.142 Sum_probs=187.9
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhccCCeEEEEecccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGK--HRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p--~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~ 84 (325)
++-.+|+.. ......+++..-+=.+.+.. .+.+++.. + +-.+....+|.+++++|.|+|++|.|.+++ |.++
T Consensus 196 l~GNeAvA~ga~~ag~~~~~~YPiTPsTei---~e~la~~~-~~~~~~~~q~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~ 270 (562)
T TIGR03710 196 ISGNEAIALGAIAAGLRFYAAYPITPASDI---LEFLAKHL-KKFGVVVVQAEDEIAAINMAIGASYAGARAMTA-TSGP 270 (562)
T ss_pred eehHHHHHHHHHHhCCceecccCCCChhHH---HHHHHHhh-hhhCcEEEeeccHHHHHHHHHhHHhcCCceeec-CCCC
Confidence 456677777 45678887776666553322 34444432 2 356667789999999999999999999999 9999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCC----CCcEEEeeCCHHHHHHHHHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHT----PGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~i----p~~~v~~P~~~~e~~~~~~~ 160 (325)
.+..+.|.|- .++..+.|.+ .+ ++.| .|++.+-+|+..|+|.-..+.- -++.|++|+|++|+.++..+
T Consensus 271 Gl~lm~E~l~-~a~~~~~P~V---i~--~~~R--~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~ 342 (562)
T TIGR03710 271 GFALMTEALG-LAGMTETPLV---IV--DVQR--GGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIE 342 (562)
T ss_pred ChhHhHHHHh-HHHhccCCEE---EE--Eccc--CCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHH
Confidence 9999999994 5665666542 11 2334 4555555789999988655432 25789999999999999999
Q ss_pred hHh----CCCcEEEeccccccccccc-------CCC--------C--CCc---c--------cC-CCc------------
Q psy8699 161 CIK----DKDPCIFFEPKVLYRAAVE-------DVP--------E--DYY---E--------LP-LDK------------ 195 (325)
Q Consensus 161 a~~----~~~Pv~i~~~~~l~~~~~~-------~~~--------~--~~~---~--------~~-~gk------------ 195 (325)
|++ .+.||+++.+..+.+...+ .+. . .++ . .. .|.
T Consensus 343 Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~ 422 (562)
T TIGR03710 343 AFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEH 422 (562)
T ss_pred HHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCcc
Confidence 997 5899999988765543210 000 0 000 0 00 010
Q ss_pred ---------------------------------eeEee-eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccccc
Q psy8699 196 ---------------------------------ADILV-AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSIL 241 (325)
Q Consensus 196 ---------------------------------~~~~~-~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~ 241 (325)
.+... +++|++||+||++...+++|++.|+++ |++++++++++++
T Consensus 423 ~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~-G~kvg~l~~~~~~ 501 (562)
T TIGR03710 423 DETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAE-GIKVALLHLRLLY 501 (562)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhc-CCeEEEEEeCeec
Confidence 00111 357899999999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 242 PWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 242 P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
|||.+.|++.+++.++|+|+|++. .|.|..+|...+
T Consensus 502 PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~ 537 (562)
T TIGR03710 502 PFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAET 537 (562)
T ss_pred CCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHh
Confidence 999999999999999999999994 488888887766
No 42
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.86 E-value=4.2e-23 Score=168.17 Aligned_cols=119 Identities=35% Similarity=0.635 Sum_probs=105.2
Q ss_pred CceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHH
Q psy8699 194 DKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 194 gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~ 273 (325)
||+.++++|.|++|||+|++++.|++|++.|+++ |++++|+++++++|||++.|.++++++++++|+|||+..||+|+.
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~-Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~ 79 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEE-GIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSA 79 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHT-TCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSS
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHc-CCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHH
Confidence 6888999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCeEEEcccCCCC-c----ccccccCCCCHHHH
Q psy8699 274 LAASIQDKCFLSLEAPIRRVTGYDTPF-P----HIFEPFYIPDKWRC 315 (325)
Q Consensus 274 v~~~l~e~~~~~~~~~v~~~~g~~~~~-~----~~~~~~~l~~~~~I 315 (325)
+++++.++++..+..++.++ |.++.| + ++++.+++ ++++|
T Consensus 80 i~~~l~~~~~~~~~~~~~~~-g~~d~~~~~~~~~~~~~~gl-~~e~I 124 (124)
T PF02780_consen 80 IAEYLAENGFNDLDAPVKRL-GVPDEFIPHGRAELLEAFGL-DAESI 124 (124)
T ss_dssp HHHHHHHHTTTGEEEEEEEE-EE-SSSHHSSHHHHHHHTTH-SHHHH
T ss_pred HHHHHHHhCCccCCCCeEEE-EECCCcccCcHHHHHHHCcC-CCCcC
Confidence 99999997653344788889 554444 3 35678888 98876
No 43
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.86 E-value=4.1e-19 Score=170.80 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=199.8
Q ss_pred chHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHhCC-----CceeechhhHHHHHHHHHHHhccCCeEEEEec
Q psy8699 8 TGFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGK-----HRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQ 81 (325)
Q Consensus 8 ~~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p-----~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it 81 (325)
++-++|+... ...+.+++..-+=.+.+. ..+.+.+.. + ..|++ .-+|.+++++|.|+|++|.|.+++ |
T Consensus 7 ~~GNeAvA~aa~~Ag~~v~a~YPITPsTe---i~e~la~~~-~~g~~~~~~v~-~EsE~aA~~~~~GAs~aGaRa~Ta-T 80 (394)
T PRK08367 7 MKANEAAAWAAKLAKPKVIAAFPITPSTL---VPEKISEFV-ANGELDAEFIK-VESEHSAISACVGASAAGVRTFTA-T 80 (394)
T ss_pred ccHHHHHHHHHHHhCCCEEEEECCCCccH---HHHHHHHHh-hcCCcCeEEEE-eCCHHHHHHHHHHHHhhCCCeEee-e
Confidence 4557888884 468999988888776422 244455443 3 22443 469999999999999999999999 9
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
.++.+..+.|.|. .++.+++|.+ +++.+++.. ...++|..|.|.-..+ --++.+++|+|.||+.++...|
T Consensus 81 S~~Gl~lm~E~l~-~aag~~lP~V-------~vv~~R~~~-~p~~i~~d~~D~~~~r-d~g~~~~~a~~~QEa~D~~~~A 150 (394)
T PRK08367 81 ASQGLALMHEVLF-IAAGMRLPIV-------MAIGNRALS-APINIWNDWQDTISQR-DTGWMQFYAENNQEALDLILIA 150 (394)
T ss_pred ccchHHHHhhHHH-HHHHccCCEE-------EEECCCCCC-CCCCcCcchHHHHhcc-ccCeEEEeCCCHHHHHHHHHHH
Confidence 9999999999996 6887777653 222222222 2346677888854334 3468889999999999999999
Q ss_pred HhC----C--CcEEEeccc-cccccccc-----------CCCC--------CC-cc-------c----------------
Q psy8699 162 IKD----K--DPCIFFEPK-VLYRAAVE-----------DVPE--------DY-YE-------L---------------- 191 (325)
Q Consensus 162 ~~~----~--~Pv~i~~~~-~l~~~~~~-----------~~~~--------~~-~~-------~---------------- 191 (325)
++. + .|++++.+. ++++...+ .++. +. .+ .
T Consensus 151 f~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~ 230 (394)
T PRK08367 151 FKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAME 230 (394)
T ss_pred HHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecHHHHH
Confidence 972 3 699999887 34432100 0000 00 00 0
Q ss_pred ---------------CCC-ceeEee----eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH
Q psy8699 192 ---------------PLD-KADILV----AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS 251 (325)
Q Consensus 192 ---------------~~g-k~~~~~----~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~ 251 (325)
..| +...+. +++|++||++|+....+++|++.|+++ |++++++++++++|||.+.|++.
T Consensus 231 ~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~-G~kVGllri~~~rPFP~~~i~~~ 309 (394)
T PRK08367 231 NAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREE-GYKVGAAKLTVYRPFPVEEIRAL 309 (394)
T ss_pred HhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhc-CCcceeEEEeEecCCCHHHHHHH
Confidence 011 111121 468999999999999999999999999 99999999999999999999999
Q ss_pred HhccCcEEEEecCCc---CCChHHHHHHHHHhhccccCCCCeEE-EcccCCCCcccccccCCCCHHHHHHHHHHHh
Q psy8699 252 ARKTGRVIIAHEAPL---TSGFGAELAASIQDKCFLSLEAPIRR-VTGYDTPFPHIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 252 ~~~~~~vivvEe~~~---~gglg~~v~~~l~e~~~~~~~~~v~~-~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
+++.++|+|+|.+.. .|.|..+|...+...+ ...++.. +.|..+. .+ +++.|.+.+++++
T Consensus 310 l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~~~glgg~--------~~-~~~~~~~~~~~~~ 373 (394)
T PRK08367 310 AKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDFIIGLGGR--------DV-TFKQLDEALEIAE 373 (394)
T ss_pred HccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEEEeCCCCC--------CC-CHHHHHHHHHHHH
Confidence 999999999999864 3557778777774321 1122332 2233221 13 8888888777654
No 44
>PRK05261 putative phosphoketolase; Provisional
Probab=99.81 E-value=1.4e-18 Score=176.99 Aligned_cols=248 Identities=15% Similarity=0.076 Sum_probs=173.0
Q ss_pred hHHHHHHHHHhcCCC-EEEEcCcCCCCcccccchhHH----------------HHhCCCceeechhhHHHHHHHHHHHhc
Q psy8699 9 GFFQSSPSQLLSSQG-GVLFGEDVGFGGVFRCSLGLQ----------------EKYGKHRVFNTPLSEQGIVGFGIGLAV 71 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~-vv~~~~D~~~~g~~~~~~~~~----------------~~~~p~r~~~~gIaE~~~v~~a~GlA~ 71 (325)
.+++.|.++++.+|+ +.++++|...+ .+....|. ... .+|+++ +++|++|.|++.|.++
T Consensus 395 ~~g~~l~~v~~~np~~frvf~pDe~~S--Nrl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~~Gy~L 470 (785)
T PRK05261 395 VLGKYLRDVIKLNPDNFRIFGPDETAS--NRLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWLEGYLL 470 (785)
T ss_pred HHHHHHHHHHHhCCCceEEEcCCcchh--hccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHHHHHHh
Confidence 388888889999999 89999998642 22112231 122 379999 9999999999999999
Q ss_pred cCCeEEEEecccccH---HHHHHHH----HHHHhhcccccCCceeccc-eEEeccCcc-CC-CCCCCCC---hhHHHHHc
Q psy8699 72 SGATAIAEIQFADYI---FPAFDQI----VNEAAKYRYRSGNQFSCGN-LTIRAPCMA-VG-HGALYHS---QSPEAYFA 138 (325)
Q Consensus 72 ~G~~p~~~it~~~F~---~ra~dqi----~~~~~~~~~~~~~~~~~~~-~v~~~~~g~-~g-~g~th~~---~~d~~~~~ 138 (325)
.|.+++++ ||-.|+ ..++.|+ |.. ....|... ++. +.+-++... .+ +|.|||. ++.++.++
T Consensus 471 tG~~~~~~-sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~~----~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r 544 (785)
T PRK05261 471 TGRHGFFS-SYEAFIHIVDSMFNQHAKWLKVA-REIPWRKP----IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKK 544 (785)
T ss_pred cCCCccee-cHHHHHHHHHHHHHHHHHHHHHH-hhcccCCC----CcceeEEeecceeecCCCCCCCCCchHHHHHHhcC
Confidence 99999999 999997 7888888 532 22222221 111 112223332 45 5999999 66667777
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEecccccccccccCCCCCC---cccCCCceeEee--e-----CCcEEE
Q psy8699 139 HTPGIKVVIPRGPYKAKGLLLSCIKD-KDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILV--A-----GTDVTL 207 (325)
Q Consensus 139 ~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~--~-----g~dv~i 207 (325)
. |++.|+.|+|.+|+..+++.|+++ ++|.+| .++|++.+.....+ ..+..| ++++. + +.|++|
T Consensus 545 ~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I----vlsRQ~lp~~~~~~~a~~~~~kG-ayi~~~a~~~~~~~pDvvL 618 (785)
T PRK05261 545 P-DVIRVYLPPDANTLLAVADHCLRSRNYINVI----VAGKQPRPQWLSMDEARKHCTKG-LGIWDWASNDDGEEPDVVL 618 (785)
T ss_pred C-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE----EEeCCCCcccCChHHHHHhccCc-eEEEEeccCCCCCCCCEEE
Confidence 7 999999999999999999999985 889999 66666655443221 123445 44554 2 369999
Q ss_pred EEechhHHH-HHHHHHHHHhhc-CCcEEEEecccccCCCH------------HHHHHHHhccCcEEEEecCCcCCChHHH
Q psy8699 208 IGWGTQVHV-LREVAGLAKEQL-GVSCEVIDLVSILPWDR------------ETVFQSARKTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 208 i~~G~~~~~-a~~A~~~L~~~~-gi~~~vi~~~~l~P~d~------------~~l~~~~~~~~~vivvEe~~~~gglg~~ 273 (325)
+|+|+.+.. |++|+++|+++. |++++||++. .+|.. +.+.++.-..+.||+. -| |..+.
T Consensus 619 ~atGsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~-~h----gyp~~ 691 (785)
T PRK05261 619 ACAGDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA-FH----GYPWL 691 (785)
T ss_pred EEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE-eC----CCHHH
Confidence 999999998 999999997743 8999999995 33333 3455555444554443 22 33445
Q ss_pred HHHHHH
Q psy8699 274 LAASIQ 279 (325)
Q Consensus 274 v~~~l~ 279 (325)
+...+-
T Consensus 692 i~~l~~ 697 (785)
T PRK05261 692 IHRLTY 697 (785)
T ss_pred HHHHhc
Confidence 554443
No 45
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.80 E-value=1.9e-17 Score=162.36 Aligned_cols=244 Identities=17% Similarity=0.182 Sum_probs=181.5
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-CCC
Q psy8699 50 HRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-ALY 128 (325)
Q Consensus 50 ~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~th 128 (325)
+-|++++.+|.-++.+|.|+++.|.|.+++ +..+.++++.|.|+ ++++.. ..||+++. ++++ +.|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~-mKhVGlNvAsDpl~-s~ay~G-------v~GGlviv-----~aDDpg~~ 123 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVT-MKHVGLNVASDPLM-SLAYAG-------VTGGLVIV-----VADDPGMH 123 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEE-ecccccccchhhhh-hhhhcC-------ccccEEEE-----EccCCCcc
Confidence 789999999999999999999999999999 79999999999998 466322 12345444 3443 447
Q ss_pred CChh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecccccccccc---------cCCCCC--Cccc
Q psy8699 129 HSQS--PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKVLYRAAV---------EDVPED--YYEL 191 (325)
Q Consensus 129 ~~~~--d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~l~~~~~---------~~~~~~--~~~~ 191 (325)
.||+ |..++.....+.|+.|+|+||++++++.+++ ++.||++|...|+.+... ++.... .+.-
T Consensus 124 SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k 203 (640)
T COG4231 124 SSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIK 203 (640)
T ss_pred cccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccC
Confidence 7775 5578888889999999999999999999998 488999998877665421 111111 1000
Q ss_pred CCCce-------------------------------eEee--eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecc
Q psy8699 192 PLDKA-------------------------------DILV--AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 192 ~~gk~-------------------------------~~~~--~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
..+++ ..+. +..++-||+.|..+..++||.+.| |++..++.+.
T Consensus 204 ~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l----gl~~~~lklg 279 (640)
T COG4231 204 DPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL----GLDDELLKLG 279 (640)
T ss_pred CccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc----CCCceeEEec
Confidence 01111 0111 237899999999999999998877 8899999999
Q ss_pred cccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCC-CcccccccCCCCHHHHHH
Q psy8699 239 SILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTP-FPHIFEPFYIPDKWRCLE 317 (325)
Q Consensus 239 ~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~-~~~~~~~~~l~~~~~I~~ 317 (325)
+.+|||.+.+++.+++.++|+||||... =+-.++.+.+.+++ .|+. +.|.++. +| ....+ |++.|..
T Consensus 280 ~~~Plp~~~i~~F~~g~~~vlVVEE~~P--~iE~qv~~~l~~~g-----~~v~-v~GKd~gllP---~~GEl-t~~~i~~ 347 (640)
T COG4231 280 TPYPLPEQLIENFLKGLERVLVVEEGEP--FIEEQVKALLYDAG-----LPVE-VHGKDEGLLP---MEGEL-TPEKIAN 347 (640)
T ss_pred CCcCCCHHHHHHHHhcCcEEEEEecCCc--hHHHHHHHHHHhcC-----CceE-eecccccccC---ccccc-CHHHHHH
Confidence 9999999999999999999999999754 35556666655542 3443 4476643 23 23445 9999999
Q ss_pred HHHHHh
Q psy8699 318 AVKQIT 323 (325)
Q Consensus 318 ~i~~~~ 323 (325)
+|.+++
T Consensus 348 ai~~~l 353 (640)
T COG4231 348 AIAKFL 353 (640)
T ss_pred HHHHHh
Confidence 988765
No 46
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.72 E-value=1.1e-15 Score=156.28 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=195.7
Q ss_pred CCCCccchHHHHHHH----HHh---cCCCEEEEcCcCCCCcccccchhHHHHh------------------------CCC
Q psy8699 2 GDQGYWTGFFQSSPS----QLL---SSQGGVLFGEDVGFGGVFRCSLGLQEKY------------------------GKH 50 (325)
Q Consensus 2 ~~~~~~~~~~~a~~~----~~~---~~~~vv~~~~D~~~~g~~~~~~~~~~~~------------------------~p~ 50 (325)
|++.+++|..-|+.+ +++ -.++||-+.+|... +|+ .+++..+. ..+
T Consensus 483 ~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDear--tfg-m~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~G 559 (885)
T TIGR00759 483 GSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEAR--TFG-MEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDG 559 (885)
T ss_pred CCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccc--cCC-hHHhhcccCccCCCCccCCccchhhhhhcccCCCC
Confidence 445566666666665 443 23459999999874 222 33333221 145
Q ss_pred ceeechhhHHHHHH--HHHHHhcc--C--CeEEEEeccccc-HHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 51 RVFNTPLSEQGIVG--FGIGLAVS--G--ATAIAEIQFADY-IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 51 r~~~~gIaE~~~v~--~a~GlA~~--G--~~p~~~it~~~F-~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.++.||+|.++++ +|+|.|.+ | +.||.. -|++| ++|..|.+. .++.+.-.. +++.++.|.+
T Consensus 560 q~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi-~YsmFgfqR~gD~~w-aa~d~~arg--------fl~g~taGrtT 629 (885)
T TIGR00759 560 QILQEGINEAGAMASWIAAATSYATHGEPMIPFYI-YYSMFGFQRIGDLCW-AAADQRARG--------FLLGATAGRTT 629 (885)
T ss_pred cchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeE-eeccccccchHHHHH-HHhhhcCCc--------eEeccCCCccc
Confidence 89999999999998 77888876 4 799999 59999 799999997 677654321 4445677763
Q ss_pred --CCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEeccccccccc--ccCCCCCC-cccCC
Q psy8699 123 --GHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKVLYRAA--VEDVPEDY-YELPL 193 (325)
Q Consensus 123 --g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~l~~~~--~~~~~~~~-~~~~~ 193 (325)
|+|.-||+..-..+...+||+.-|.|+...|+..++++.++ .+..+|.+... ++.+ .|..|..- ..+-.
T Consensus 630 L~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~--~ne~~~qp~~p~~~~egIlk 707 (885)
T TIGR00759 630 LNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTV--MNENYVQPPMPEGAEEGILK 707 (885)
T ss_pred CCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEe--cCCCCCCCCCCcchHHhHHh
Confidence 56777876655567778999999999999999999998887 35677775432 1111 22332210 11222
Q ss_pred CceeEeee------CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHH-------------------
Q psy8699 194 DKADILVA------GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV------------------- 248 (325)
Q Consensus 194 gk~~~~~~------g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l------------------- 248 (325)
| .+.+++ +.++.|+++|+.+.++++|+++|+++||+.++|+++++..-|..+..
T Consensus 708 G-~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v 786 (885)
T TIGR00759 708 G-LYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYV 786 (885)
T ss_pred C-ceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHH
Confidence 3 333433 24799999999999999999999998899999999999877766532
Q ss_pred HHHHhc-cCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHH
Q psy8699 249 FQSARK-TGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 249 ~~~~~~-~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~ 321 (325)
.+.+.. ...||++-+... ....+|..+ .+.+...+ |.|+ |+ .+.+.|++ +++.|+.++.+
T Consensus 787 ~~~L~~~~gP~va~tDy~~--~~~~qir~~--------vp~~~~~L-GtDg-FGrSdtr~~lr~~fev-Da~~IV~AAL~ 853 (885)
T TIGR00759 787 AQVLNEADAPVIASTDYVR--AFAEQIRPY--------VPRKYVTL-GTDG-FGRSDTRENLRHFFEV-DAKSVVLAALY 853 (885)
T ss_pred HHHhccCCCCEEEEccchh--hhHHHHhhh--------cCCCceEe-cCCC-CCCCCCHHHHHHHcCC-CHHHHHHHHHH
Confidence 111212 224555544321 123333222 34556555 6664 43 45677888 99999999887
Q ss_pred Hh
Q psy8699 322 IT 323 (325)
Q Consensus 322 ~~ 323 (325)
.+
T Consensus 854 aL 855 (885)
T TIGR00759 854 AL 855 (885)
T ss_pred HH
Confidence 65
No 47
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.68 E-value=3.2e-14 Score=135.84 Aligned_cols=250 Identities=13% Similarity=0.087 Sum_probs=172.3
Q ss_pred hHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhC--CCceeechhhHHHHHHHHHHHhccCCeEEEEeccccc
Q psy8699 9 GFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADY 85 (325)
Q Consensus 9 ~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F 85 (325)
+-.+|... .....++++..-+=...+.. .+.+.+... ...|+++ -+|.++++++.|++++|.|.+++ |.++.
T Consensus 7 ~Gn~AvA~~a~~a~~~~~a~YPITPss~i---~e~l~~~~~~~~~~~vq~-EsE~~a~s~v~GA~~aGar~~Ta-TSg~G 81 (365)
T COG0674 7 DGNEAVAYAAIAAGCRVIAAYPITPSSEI---AEYLASWKAKVGGVFVQM-ESEIGAISAVIGASYAGARAFTA-TSGQG 81 (365)
T ss_pred cHHHHHHHHHHhcCCcEEEEeCCCCchHH---HHHHHHHHhhcCcEEEEe-ccHHHHHHHHHHHHhhCcceEee-cCCcc
Confidence 44667776 44567788888877664322 333333330 3456666 59999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh--
Q psy8699 86 IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK-- 163 (325)
Q Consensus 86 ~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~-- 163 (325)
+..+.+.+- .++.+..|.. +++....+++..-+++..|.|+...+.. ++.+++-+|.+|+.+....|++
T Consensus 82 l~Lm~E~l~-~a~~~~~P~V-------i~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iA 152 (365)
T COG0674 82 LLLMAEALG-LAAGTETPLV-------IVVAQRPLPSTGLPIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIA 152 (365)
T ss_pred HHHHHHHHH-HHHhccCCeE-------EEEeccCcCCCcccccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHH
Confidence 888888885 6777777653 1222333555445688899998777766 8888888899999999888887
Q ss_pred --CCCcEEEecccccccccc------------cCC----------------CC----CCc----------ccC-------
Q psy8699 164 --DKDPCIFFEPKVLYRAAV------------EDV----------------PE----DYY----------ELP------- 192 (325)
Q Consensus 164 --~~~Pv~i~~~~~l~~~~~------------~~~----------------~~----~~~----------~~~------- 192 (325)
..-|+++..+..+..... +.+ +. .+. ..+
T Consensus 153 e~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~ 232 (365)
T COG0674 153 EKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIK 232 (365)
T ss_pred HHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHH
Confidence 488999997653322110 000 00 000 000
Q ss_pred ---------CCc-e---eEee-eCCcEEEEEechhHHHHHHHHHHH-HhhcCCcEEEEecccccCCCHHHHHHHHhccCc
Q psy8699 193 ---------LDK-A---DILV-AGTDVTLIGWGTQVHVLREVAGLA-KEQLGVSCEVIDLVSILPWDRETVFQSARKTGR 257 (325)
Q Consensus 193 ---------~gk-~---~~~~-~g~dv~ii~~G~~~~~a~~A~~~L-~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~ 257 (325)
.+. + .+.. ++++++||+||+....+.+|+..+ +++ |++++++++++++|||.+.+++.+++.+.
T Consensus 233 r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~-g~kvg~l~vr~~rPFp~~~i~~~l~~~~~ 311 (365)
T COG0674 233 RALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDK-GEKVGLLKVRTLRPFPAEEIREVLPKTNA 311 (365)
T ss_pred HHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhc-CceEEEEEEEEeCCCCHHHHHHHhcccce
Confidence 000 0 1111 578899999998888877776664 576 99999999999999999999999998776
Q ss_pred EEEEecCCcCCChHHH
Q psy8699 258 VIIAHEAPLTSGFGAE 273 (325)
Q Consensus 258 vivvEe~~~~gglg~~ 273 (325)
+.|++.....|+++.-
T Consensus 312 ~~Vl~~e~~~g~~~~~ 327 (365)
T COG0674 312 VVVLDVEISLGGLAEP 327 (365)
T ss_pred eEEEEEccCCccchhh
Confidence 6666665555664433
No 48
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.66 E-value=6.6e-14 Score=150.52 Aligned_cols=260 Identities=12% Similarity=0.119 Sum_probs=177.5
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCeEEEEe
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-------RVFNTPLSEQGIVGFGIGLAVSGATAIAEI 80 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-------r~~~~gIaE~~~v~~a~GlA~~G~~p~~~i 80 (325)
++-.+|+...+....++++.-+=...+......+.+.++ |+. .|+++ -+|.++++++.|++.+|.|.++.
T Consensus 4 ~~GNeAvA~~A~~~~~~~~~YPITPss~i~e~l~~~~~~-g~~n~~G~~~~~vq~-EsE~~A~~av~GA~~aGara~T~- 80 (1165)
T TIGR02176 4 MDGNTAAAHVAYAFSEVAAIYPITPSSTMGEYVDDWAAQ-GRKNIFGQTVKVVEM-QSEAGAAGAVHGALQTGALTTTF- 80 (1165)
T ss_pred eeHHHHHHHHHHHhCCEEEEECCCCCcHHHHHHHHHHHh-CCcccCCCCceEEEc-cchHHHHHHHHhHhhcCCCEEEe-
Confidence 345677777665577888877765532221111222222 122 35555 69999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
|.++.+..+.+.|- .++.+++|.+ + + ++.| .+.......+..+.|....|.. |+.+++|+|.||+.++...
T Consensus 81 TSs~GL~LM~e~l~-~~ag~~~P~V--i-~--va~R--~~~~~~~~i~~dh~Dv~~~R~~-G~ivl~s~svQEa~D~al~ 151 (1165)
T TIGR02176 81 TASQGLLLMIPNMY-KIAGELLPCV--F-H--VSAR--AIAAHALSIFGDHQDVMAARQT-GFAMLASSSVQEVMDLALV 151 (1165)
T ss_pred cChhHHHHHHHHHH-HHHhccCCEE--E-E--EecC--CCCCCCCccCCCchHHHHhhcC-CeEEEeCCCHHHHHHHHHH
Confidence 99998888888884 4554455542 1 1 2333 3433334456666776445555 7899999999999999998
Q ss_pred hHh----CCCcEEEecccc-cccccccC-----------CCCC---Cc---------ccC--------------------
Q psy8699 161 CIK----DKDPCIFFEPKV-LYRAAVED-----------VPED---YY---------ELP-------------------- 192 (325)
Q Consensus 161 a~~----~~~Pv~i~~~~~-l~~~~~~~-----------~~~~---~~---------~~~-------------------- 192 (325)
|++ .+.|++++++-. +++...+. ++.. .+ +..
T Consensus 152 A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~ 231 (1165)
T TIGR02176 152 AHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRGTAQNPDIYFQGREAVNPY 231 (1165)
T ss_pred HHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeCCCCCcchhhhhHHHHHHH
Confidence 886 588999998752 22221000 0000 00 000
Q ss_pred ------------------CCc----eeEe-eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHH
Q psy8699 193 ------------------LDK----ADIL-VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVF 249 (325)
Q Consensus 193 ------------------~gk----~~~~-~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~ 249 (325)
.|+ .... .++++.+||++|+....+.+|++.|+++ |+++++|+++++||||.+.|+
T Consensus 232 ~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~-G~kVGli~vr~~rPFp~e~l~ 310 (1165)
T TIGR02176 232 YLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK-GEKVGLLKVRLYRPFSAETFF 310 (1165)
T ss_pred HhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc-CCceeEEEEeEeCCCCHHHHH
Confidence 111 0111 2468999999999999999999999998 999999999999999999999
Q ss_pred HHH-hccCcEEEEecCCcCC----ChHHHHHHHHHh
Q psy8699 250 QSA-RKTGRVIIAHEAPLTS----GFGAELAASIQD 280 (325)
Q Consensus 250 ~~~-~~~~~vivvEe~~~~g----glg~~v~~~l~e 280 (325)
+.+ +..++|+|+|.+...| .|..+|...+..
T Consensus 311 ~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 311 AALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred HHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 988 5789999999985433 477777777754
No 49
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.63 E-value=9e-14 Score=147.63 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=174.6
Q ss_pred ceeechhhHHHHHHHHHHHh---------ccCCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc
Q psy8699 51 RVFNTPLSEQGIVGFGIGLA---------VSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA 121 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA---------~~G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 121 (325)
-++++|++|.-++.++.|++ ..|.+.+|+ +.++.++++.|.|++ +++. ++...||+++.
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~-~n~~-----G~~~~GG~v~v----- 142 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWY-GKGPGVDRAGDALKH-GNAY-----GSSPHGGVLVV----- 142 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEe-cCcCCcccchhHHHH-HHhh-----cCCCCCcEEEE-----
Confidence 79999999999999999999 778888999 899999999999984 4432 12223445444
Q ss_pred CCCC-CCCCChh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecccccccccc-----c-----CC
Q psy8699 122 VGHG-ALYHSQS--PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKVLYRAAV-----E-----DV 184 (325)
Q Consensus 122 ~g~g-~th~~~~--d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~l~~~~~-----~-----~~ 184 (325)
+|++ +.|.||. |-.++...-+|.|+.|+|++|++++.+++++ ++.||.++...++.+... + ..
T Consensus 143 ~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~ 222 (1159)
T PRK13030 143 AGDDHGCVSSSMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPA 222 (1159)
T ss_pred EecCCCCccCcCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCC
Confidence 3443 3466775 4456777778899999999999999999997 488999997665544320 0 11
Q ss_pred CCCCccc-----------------------------------CCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcC
Q psy8699 185 PEDYYEL-----------------------------------PLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLG 229 (325)
Q Consensus 185 ~~~~~~~-----------------------------------~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~g 229 (325)
+. ++.. ++++...-.++.++.||++|.....++||.+.|..+ +
T Consensus 223 ~~-~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~-~ 300 (1159)
T PRK13030 223 PE-DFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLD-D 300 (1159)
T ss_pred cc-ccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCC-c
Confidence 10 0111 111111112247899999999999999999998654 4
Q ss_pred C-----cEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc-cc
Q psy8699 230 V-----SCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP-HI 303 (325)
Q Consensus 230 i-----~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~-~~ 303 (325)
+ .++++++...+|||.+.+.+.+++.++|+||||... =+-.++.+.+.+.. ...+. ++.|..+.-+ .+
T Consensus 301 ~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p--~iE~Qlk~~l~~~~---~~~~~-~v~GK~~~~G~pl 374 (1159)
T PRK13030 301 ADLRAAGIRIYKVGLSWPLEPTRLREFADGLEEILVIEEKRP--VIEQQIKDYLYNRP---GGARP-RVVGKHDEDGAPL 374 (1159)
T ss_pred ccccccCccEEEeCCccCCCHHHHHHHHhcCCEEEEEeCCch--HHHHHHHHHHHhcc---ccCCc-eeEEEECCCCCcC
Confidence 2 468888889999999999999999999999999752 34456665554321 11122 2335433111 12
Q ss_pred c-cccCCCCHHHHHHHHHHHh
Q psy8699 304 F-EPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 304 ~-~~~~l~~~~~I~~~i~~~~ 323 (325)
+ ....| +++.|.+++.+.+
T Consensus 375 lp~~gEl-~~~~v~~~l~~~l 394 (1159)
T PRK13030 375 LSELGEL-RPSLIAPVLAARL 394 (1159)
T ss_pred CCCcCCc-CHHHHHHHHHHHH
Confidence 2 34456 9999999887654
No 50
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.60 E-value=3.7e-13 Score=142.65 Aligned_cols=249 Identities=13% Similarity=0.064 Sum_probs=174.3
Q ss_pred ceeechhhHHHHHHHH---------HHHhccCCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc
Q psy8699 51 RVFNTPLSEQGIVGFG---------IGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA 121 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a---------~GlA~~G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 121 (325)
-++++|++|.-++.++ .|.+..|.+.+|+ +.++.+.|+-|.|++ +++. ++...||+++.
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~-~n~~-----G~~~~GGvv~v----- 150 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWY-GKGPGVDRSGDVFRH-ANAA-----GTSPHGGVLAL----- 150 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeeccceEEEe-cCcCCccccHhHHHH-HHhh-----cCCCCCcEEEE-----
Confidence 7999999999999999 7779999999999 899999999999984 4422 12223445444
Q ss_pred CCCC-CCCCChh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecccccccccc-------c---CC
Q psy8699 122 VGHG-ALYHSQS--PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKVLYRAAV-------E---DV 184 (325)
Q Consensus 122 ~g~g-~th~~~~--d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~l~~~~~-------~---~~ 184 (325)
+|++ +.|.||. |-.++...-+|.|+.|+|++|++++.++++. +..||.++...++.+... + ..
T Consensus 151 ~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~ 230 (1165)
T PRK09193 151 AGDDHAAKSSTLPHQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVL 230 (1165)
T ss_pred EecCCCCccccchhhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCC
Confidence 3443 3466664 4456666778899999999999999999997 488999987665543320 0 11
Q ss_pred CCCCcccCCC----ce-----------------------------eEe-e-eCCcEEEEEechhHHHHHHHHHHHHhhcC
Q psy8699 185 PEDYYELPLD----KA-----------------------------DIL-V-AGTDVTLIGWGTQVHVLREVAGLAKEQLG 229 (325)
Q Consensus 185 ~~~~~~~~~g----k~-----------------------------~~~-~-~g~dv~ii~~G~~~~~a~~A~~~L~~~~g 229 (325)
+ .++..+.+ +| ++. . ++.++.||++|..+..+++|.+.| |
T Consensus 231 ~-~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l----g 305 (1165)
T PRK09193 231 P-EDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL----G 305 (1165)
T ss_pred c-ccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc----C
Confidence 1 11111111 11 011 1 246899999999999999999987 5
Q ss_pred Cc--------EEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc
Q psy8699 230 VS--------CEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP 301 (325)
Q Consensus 230 i~--------~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~ 301 (325)
++ ++++++.+.||||.+.+++.+++.++|+||||-.. =+-.++.+.+-+.. ...+- ++.|..++-+
T Consensus 306 ~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp-~v~GK~~~~g 379 (1165)
T PRK09193 306 LDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQ--IIEYQLKEELYNWP---DDVRP-RVIGKFDPQG 379 (1165)
T ss_pred CChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCc-eeEeeeCCCC
Confidence 54 89999999999999999999999999999999742 34555555554321 12111 2336554222
Q ss_pred -ccc-cccCCCCHHHHHHHHHHHh
Q psy8699 302 -HIF-EPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 302 -~~~-~~~~l~~~~~I~~~i~~~~ 323 (325)
.++ ....| +++.|.+++.+.+
T Consensus 380 ~~llp~~gEl-~~~~va~~l~~~l 402 (1165)
T PRK09193 380 NWLLPAHGEL-SPAIIAKAIARRL 402 (1165)
T ss_pred CccCCCcCCc-CHHHHHHHHHHHh
Confidence 122 34456 9999999987654
No 51
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.55 E-value=1.2e-12 Score=138.71 Aligned_cols=253 Identities=13% Similarity=0.049 Sum_probs=171.4
Q ss_pred ceeechhhHHHH---------HHHHHHHhccCCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc
Q psy8699 51 RVFNTPLSEQGI---------VGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA 121 (325)
Q Consensus 51 r~~~~gIaE~~~---------v~~a~GlA~~G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 121 (325)
-++++|++|.-+ +.++.|.+..|.+.+|+ +.++.+.|+-|.|++.... + . -..||+++.
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwy-gK~pGvn~aaD~l~h~n~~--g--t--~~~GGvv~v----- 153 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWY-GKGPGVDRSGDALRHANLA--G--T--SPLGGVLVL----- 153 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEe-cCcCCcccchhHHHHhhcc--c--c--CCCCcEEEE-----
Confidence 799999999999 77888888899999999 8999999999999853321 1 1 122344444
Q ss_pred CCCC-CCCCChh--HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecccccccccc-----c-----CC
Q psy8699 122 VGHG-ALYHSQS--PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKVLYRAAV-----E-----DV 184 (325)
Q Consensus 122 ~g~g-~th~~~~--d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~l~~~~~-----~-----~~ 184 (325)
+|++ +.|.||. |-.++...-+|.|+.|+|++|++++.++++. +..||.++...++.+... + ..
T Consensus 154 ~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~ 233 (1186)
T PRK13029 154 AGDDHGAKSSSVAHQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVL 233 (1186)
T ss_pred EecCCCCccccCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCC
Confidence 3443 3466665 3456666668889999999999999999997 488999997766544320 0 11
Q ss_pred CCCCccc-----------------------------------CCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhh--
Q psy8699 185 PEDYYEL-----------------------------------PLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQ-- 227 (325)
Q Consensus 185 ~~~~~~~-----------------------------------~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~-- 227 (325)
+ .++.. ++++...-.++.++.||++|..+..++||.+.|..+
T Consensus 234 p-~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~ 312 (1186)
T PRK13029 234 P-DDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDA 312 (1186)
T ss_pred c-ccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChh
Confidence 1 01111 111110002247899999999999999999887221
Q ss_pred --cCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC-------
Q psy8699 228 --LGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT------- 298 (325)
Q Consensus 228 --~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~------- 298 (325)
..+.++++++.+.||||.+.+++.+++.+.|+||||-. .=+-.+|.+.+-+.. ...+. ++.|..+
T Consensus 313 ~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~--p~iE~qlk~~l~~~~---~~~rp-~v~GK~~~~~~~~~ 386 (1186)
T PRK13029 313 TCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKR--AVIEYQLKEELYNWR---EDVRP-AIFGKFDHRDGAGG 386 (1186)
T ss_pred hccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCc--hHHHHHHHHHHhhcc---CCcCC-eeEecccccccccc
Confidence 01238999999999999999999999999999999974 235555555554321 11111 2336543
Q ss_pred ----CCc-ccc-cccCCCCHHHHHHHHHHHh
Q psy8699 299 ----PFP-HIF-EPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 299 ----~~~-~~~-~~~~l~~~~~I~~~i~~~~ 323 (325)
+-+ .++ ....| +++.|.+++.+.+
T Consensus 387 ~~~~~~g~~llp~~gEL-~p~~va~~l~~~l 416 (1186)
T PRK13029 387 EWSVPAGRWLLPAHAEL-SPALIAKAIARRL 416 (1186)
T ss_pred cccccccCCCCCcccCc-CHHHHHHHHHHHH
Confidence 100 122 33456 9999999887654
No 52
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.47 E-value=6e-12 Score=124.37 Aligned_cols=290 Identities=18% Similarity=0.164 Sum_probs=183.1
Q ss_pred CCCcc----chHHHHHHHHHhc---CCCEEEEcCcCCCCcccccchhHHHHh------------------------CCCc
Q psy8699 3 DQGYW----TGFFQSSPSQLLS---SQGGVLFGEDVGFGGVFRCSLGLQEKY------------------------GKHR 51 (325)
Q Consensus 3 ~~~~~----~~~~~a~~~~~~~---~~~vv~~~~D~~~~g~~~~~~~~~~~~------------------------~p~r 51 (325)
.||++ +.|..+++++++. .++||-+.+|... +|+ .+++..+. ..+|
T Consensus 487 ~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDear--Tfg-meg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQ 563 (887)
T COG2609 487 GQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEAR--TFG-MEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQ 563 (887)
T ss_pred ccCccchhHHHHHHHHHHHHhccccCCccccccCchhh--hcc-chhhhhhcccccCCCccCCccchhhhhhhhhCCCcc
Confidence 45554 4556666666652 2458999999863 222 33322211 1458
Q ss_pred eeechhhHHHHHH--HHHHHhcc----CCeEEEEeccccc-HHHHHHHHHHHHhhcccccCCceeccceEEeccCcc---
Q psy8699 52 VFNTPLSEQGIVG--FGIGLAVS----GATAIAEIQFADY-IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--- 121 (325)
Q Consensus 52 ~~~~gIaE~~~v~--~a~GlA~~----G~~p~~~it~~~F-~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--- 121 (325)
.++.||+|.++++ +|+|.|.+ -+.||..+ |++| ++|..|-+. .+|.+.-.. +. +.+..|.
T Consensus 564 iLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~-YsmFgfqRigD~~w-aA~dq~ARg---FL-----lgaTagrtTL 633 (887)
T COG2609 564 ILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY-YSMFGFQRIGDLLW-AAGDQDARG---FL-----LGATAGRTTL 633 (887)
T ss_pred hHHhhhccccHHHHHHHHhcccccCCccceeeeee-echhhhhhHHHHHH-HHHhhhhcc---ee-----EeecCCCcee
Confidence 9999999999998 78888876 38999995 9999 799999986 788765422 33 2233343
Q ss_pred CCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-------CCcEEEeccccccccc--ccCCCCCC-ccc
Q psy8699 122 VGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-------KDPCIFFEPKVLYRAA--VEDVPEDY-YEL 191 (325)
Q Consensus 122 ~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-------~~Pv~i~~~~~l~~~~--~~~~~~~~-~~~ 191 (325)
.|+|.-|++..-.-+-..+||+.-|.|+...|+.-++.++++. +.-.|+ +++..+ .|..|... ..+
T Consensus 634 ngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYl----t~~ne~~~qPamp~gae~gI 709 (887)
T COG2609 634 NGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYI----TLSNENYPQPAMPEGAEEGI 709 (887)
T ss_pred CccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEE----EeccCcCCCCCCCCcchhhh
Confidence 3567667644333344568999999999999999999988872 334666 443332 23333211 122
Q ss_pred CCCceeEee---e--CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH-------------------H
Q psy8699 192 PLDKADILV---A--GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE-------------------T 247 (325)
Q Consensus 192 ~~gk~~~~~---~--g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~-------------------~ 247 (325)
..| .+.++ . +.++.|+++|....+|++|+++|++++|+.++|.++++..-|-.+ .
T Consensus 710 ~kG-~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~y 788 (887)
T COG2609 710 IKG-IYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPY 788 (887)
T ss_pred hhc-eeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchH
Confidence 223 22232 1 478999999999999999999999977999999999997655443 2
Q ss_pred HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHH
Q psy8699 248 VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 248 l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~ 321 (325)
+.+.+.....+|.+-+-. ...++++.. ..+. -+++.|.++ |+ .+.++|++ +++.|+.++..
T Consensus 789 v~~~L~~~~p~Va~tDy~------~~~a~qir~----~vp~-~y~vLGtdg-FGrSdsr~~Lr~~fev-Da~~vv~Aal~ 855 (887)
T COG2609 789 VAQVLNADGPVVAVTDYM------KLFAEQIRA----VVPQ-RYRVLGTDG-FGRSDSRENLRRFFEV-DAYYVVVAALS 855 (887)
T ss_pred HHHHhccCCCeEEechhh------HhHHHHHhc----ccCC-eeEEeccCC-CCccCcHHHHHHHhcc-chHHHHHHHHH
Confidence 333333234555554432 223333322 1332 234446664 43 34556677 77777777665
Q ss_pred Hh
Q psy8699 322 IT 323 (325)
Q Consensus 322 ~~ 323 (325)
.+
T Consensus 856 ~L 857 (887)
T COG2609 856 AL 857 (887)
T ss_pred HH
Confidence 43
No 53
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.34 E-value=9.2e-11 Score=120.28 Aligned_cols=272 Identities=20% Similarity=0.259 Sum_probs=196.2
Q ss_pred hHHHHHHH--HHhcCCCEEEEcCcCCCCccccc----------------chhHHHHhCCCceeechhhHHHHHHHHHHHh
Q psy8699 9 GFFQSSPS--QLLSSQGGVLFGEDVGFGGVFRC----------------SLGLQEKYGKHRVFNTPLSEQGIVGFGIGLA 70 (325)
Q Consensus 9 ~~~~a~~~--~~~~~~~vv~~~~D~~~~g~~~~----------------~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA 70 (325)
.|.|.|.- ++.+...|-+.++|..+|+ |.- +..|.+..++=..+|..++|-+++|+-.|-|
T Consensus 890 a~gEllAfGsLl~eG~~VRL~GQDsrRGT-F~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYS 968 (1228)
T PRK12270 890 AFGELLAFGSLLLEGTPVRLSGQDSRRGT-FSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYS 968 (1228)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccCCcc-eeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeee
Confidence 45665554 8888899999999987753 310 1122211111147899999999999999999
Q ss_pred cc--CCeEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHc--CCCCc
Q psy8699 71 VS--GATAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFA--HTPGI 143 (325)
Q Consensus 71 ~~--G~~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~--~ip~~ 143 (325)
.+ ...++|+-+|.+|. |-..|+++ +.+.++|... .+++...|+|.-|-|+-|.|-..++++. .=.||
T Consensus 969 v~~pdaLVlWEAQFGDF~NGAQtiIDefI-ss~e~KWgQ~-----S~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~nm 1042 (1228)
T PRK12270 969 VERPDALVLWEAQFGDFANGAQTIIDEFI-SSGEAKWGQR-----SGVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNM 1042 (1228)
T ss_pred cCCCcceeeehhhhcccccchHHHHHHHH-hhhHhhhccc-----cceEEEccCCcCCCCCCcchHHHHHHHHhhccCCe
Confidence 88 47788888999997 88999997 5666777442 2367778999888899899888888755 46799
Q ss_pred EEEeeCCHHHHHHHHHH-hHh-CCCcEEEecccccccccccCCCCCCcccCCCcee-Eee------e-CCcEEEEEechh
Q psy8699 144 KVVIPRGPYKAKGLLLS-CIK-DKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKAD-ILV------A-GTDVTLIGWGTQ 213 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~-a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~-~~~------~-g~dv~ii~~G~~ 213 (325)
+|..|++|.....++++ ++. -++|.+++.||.|.|......+.+++ --|+.+ ++. + ..+-+|+|+|-.
T Consensus 1043 ~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedF--T~g~F~pVi~D~~~~~~~~V~RVlLcSGKv 1120 (1228)
T PRK12270 1043 TVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDF--TEGKFRPVIDDPTVDDGAKVRRVLLCSGKL 1120 (1228)
T ss_pred EEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHh--ccCCceecCCCCCCCCccceeEEEEEcchh
Confidence 99999999999999996 444 48999999999998875322222221 123322 111 1 246789999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc---CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCe
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT---GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPI 290 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v 290 (325)
+....++.+.-. .-++.++++-.|.|||.+.|.+.+.++ ..+++|.|...+-|-...++-.+.+... -..++
T Consensus 1121 YYdL~a~R~k~~---~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~l~--~~~~l 1195 (1228)
T PRK12270 1121 YYDLAARREKDG---RDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPELLP--DGRRL 1195 (1228)
T ss_pred HHHHHHHHHhcC---CCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhHhhcc--CCCCc
Confidence 998887755432 337999999999999999999998886 3578888877776665666655555321 13567
Q ss_pred EEEc
Q psy8699 291 RRVT 294 (325)
Q Consensus 291 ~~~~ 294 (325)
++++
T Consensus 1196 r~Vs 1199 (1228)
T PRK12270 1196 RRVS 1199 (1228)
T ss_pred eEec
Confidence 7663
No 54
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.32 E-value=2.3e-11 Score=102.01 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=89.7
Q ss_pred HHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC
Q psy8699 44 QEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG 123 (325)
Q Consensus 44 ~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g 123 (325)
.++. +++.+..+++|++++++|.|.|+.|.+|++..++++|+.+++++|. ++...+.|. +++.+..+..+
T Consensus 30 ~~~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pv--------l~i~~~~~~~~ 99 (154)
T cd06586 30 LREG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPV--------VFLIGARGISA 99 (154)
T ss_pred Hhcc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCE--------EEEeCCCChhh
Confidence 3445 7899999999999999999999998899888667999999999998 666555443 11222223333
Q ss_pred -CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH----hCCCcEEEecc
Q psy8699 124 -HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI----KDKDPCIFFEP 173 (325)
Q Consensus 124 -~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~----~~~~Pv~i~~~ 173 (325)
.+++||.+++.++++.+|++.+..|++.++... +..++ ..++|+++++|
T Consensus 100 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 100 QAKQTFQSMFDLGMYRSIPEANISSPSPAELPAG-IDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred hccCcccccCHHHHHHHhhheEEEeCCHHHHHHH-HHHHHHHHhcCCCCEEEEcc
Confidence 366799999999999999999988877655543 33343 34789999776
No 55
>KOG0450|consensus
Probab=99.25 E-value=2.3e-10 Score=113.03 Aligned_cols=262 Identities=20% Similarity=0.216 Sum_probs=190.9
Q ss_pred hHHHHHHH--HHhcCCCEEEEcCcCCCCcccccchh-HHHHh------------CCC----ceeechhhHHHHHHHHHHH
Q psy8699 9 GFFQSSPS--QLLSSQGGVLFGEDVGFGGVFRCSLG-LQEKY------------GKH----RVFNTPLSEQGIVGFGIGL 69 (325)
Q Consensus 9 ~~~~a~~~--~~~~~~~vv~~~~D~~~~g~~~~~~~-~~~~~------------~p~----r~~~~gIaE~~~v~~a~Gl 69 (325)
...|||.- ++++.-.|-+.+.|+.+|+ |..-+. |.++- -|+ -+-|..++|-+.+|+-.|-
T Consensus 652 al~EalAFgsLl~EG~hVRlSGQDVERGT-FShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGY 730 (1017)
T KOG0450|consen 652 ALAEALAFGSLLKEGIHVRLSGQDVERGT-FSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGY 730 (1017)
T ss_pred HHHHHHHHHHHHhcCceEEeecccccccc-cccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecc
Confidence 45666664 8899999999999999864 432222 33221 033 3678999999999999999
Q ss_pred hcc--CCeEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcC-----
Q psy8699 70 AVS--GATAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAH----- 139 (325)
Q Consensus 70 A~~--G~~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~----- 139 (325)
|++ ...++|+-+|++|. |..+||++ ..+..+|-- ..|+|...|.|.-|.|+-|.|-..++++..
T Consensus 731 sm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW~r-----qsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp 804 (1017)
T KOG0450|consen 731 SMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKWVR-----QSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDP 804 (1017)
T ss_pred cccCCCceEEeehhhccccccchhhHHhHh-ccchhhhhh-----hcCeEEEccCCcCCCCcccccccHHHHHHhccCCC
Confidence 998 58888888999996 89999998 455555522 124777789998888999988877665442
Q ss_pred --CC-------------CcEEEeeCCHHHHHHHHHHhHh--CCCcEEEecccccccccccCCCCC----Cccc-----CC
Q psy8699 140 --TP-------------GIKVVIPRGPYKAKGLLLSCIK--DKDPCIFFEPKVLYRAAVEDVPED----YYEL-----PL 193 (325)
Q Consensus 140 --ip-------------~~~v~~P~~~~e~~~~~~~a~~--~~~Pv~i~~~~~l~~~~~~~~~~~----~~~~-----~~ 193 (325)
+| ||+|+.+++|.....+++.-+. .++|.+|+.||.|.|.+....+.+ ...| +-
T Consensus 805 ~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~ 884 (1017)
T KOG0450|consen 805 DVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPED 884 (1017)
T ss_pred ccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceecccc
Confidence 22 8999999999999999998775 599999999999998864222111 1111 11
Q ss_pred CceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC--cEEEEecCCcCCChH
Q psy8699 194 DKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG--RVIIAHEAPLTSGFG 271 (325)
Q Consensus 194 gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~--~vivvEe~~~~gglg 271 (325)
||...-.++.+-+|+|+|..+....++.+....+ -++.+.++..|.|||.+.+.+.++++. .+++..|...+-|-.
T Consensus 885 g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~--~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w 962 (1017)
T KOG0450|consen 885 GKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE--GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAW 962 (1017)
T ss_pred ccccCChhhceEEEEecceEehhhhHHHHhcCcc--cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCch
Confidence 2222223567889999999999888888877633 278999999999999999999999875 677776655665555
Q ss_pred HHHHHHHH
Q psy8699 272 AELAASIQ 279 (325)
Q Consensus 272 ~~v~~~l~ 279 (325)
+.+.-.+.
T Consensus 963 ~Yv~PRl~ 970 (1017)
T KOG0450|consen 963 DYVEPRLR 970 (1017)
T ss_pred hhcchHHH
Confidence 55554443
No 56
>KOG0451|consensus
Probab=99.17 E-value=2.3e-10 Score=110.64 Aligned_cols=258 Identities=20% Similarity=0.269 Sum_probs=178.9
Q ss_pred HHHHHH--HHHhcCCCEEEEcCcCCCCcccccchh-HHHHh-----------CCC-----ceeechhhHHHHHHHHHHHh
Q psy8699 10 FFQSSP--SQLLSSQGGVLFGEDVGFGGVFRCSLG-LQEKY-----------GKH-----RVFNTPLSEQGIVGFGIGLA 70 (325)
Q Consensus 10 ~~~a~~--~~~~~~~~vv~~~~D~~~~g~~~~~~~-~~~~~-----------~p~-----r~~~~gIaE~~~v~~a~GlA 70 (325)
..||+. .++.+..+|-+.+.|+|+|+ |..-.. +.++- -++ -+-|..++|.+.+|+-.|||
T Consensus 568 TAEAlA~GSll~qG~nVRiSGqDVGRGT-FshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGms 646 (913)
T KOG0451|consen 568 TAEALAIGSLLYQGHNVRISGQDVGRGT-FSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMS 646 (913)
T ss_pred HHHHHHHHHHHhccCceeeeccccCccc-ccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccc
Confidence 345554 48899999999999999864 321111 11111 011 25567889999999999999
Q ss_pred cc--CCeEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcC------
Q psy8699 71 VS--GATAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAH------ 139 (325)
Q Consensus 71 ~~--G~~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~------ 139 (325)
.. ...++|+-+|.+|. +-.+|.++. .+..+|.... ++++..|.|..|.|+-|.|-..+.++..
T Consensus 647 ienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~KWl~ss-----glvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~ 720 (913)
T KOG0451|consen 647 IENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETKWLESS-----GLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKET 720 (913)
T ss_pred cCCcccceeehhhhcccccCceEEEeeeec-ccchhhhhhC-----CeEEEccCCcCCCCCccchhhHHHHHHHhccccc
Confidence 99 47888888999997 566666663 3334554422 3666678898888888887766666542
Q ss_pred -----CCCcEEEeeCCHHHHHHHHHHhH-h-CCCcEEEeccccccccccc-----CC-CCCCcccCCCceeEee-eCCcE
Q psy8699 140 -----TPGIKVVIPRGPYKAKGLLLSCI-K-DKDPCIFFEPKVLYRAAVE-----DV-PEDYYELPLDKADILV-AGTDV 205 (325)
Q Consensus 140 -----ip~~~v~~P~~~~e~~~~~~~a~-~-~~~Pv~i~~~~~l~~~~~~-----~~-~~~~~~~~~gk~~~~~-~g~dv 205 (325)
--||.|.-|+++.+...+++.-+ + .++|.++..||.+.|.+.. +. |...+.-.+|.. ..+ +.-+-
T Consensus 721 ~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~-~~~p~kvkk 799 (913)
T KOG0451|consen 721 SVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT-IAKPEKVKK 799 (913)
T ss_pred cCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccc-ccChhHheE
Confidence 23899999999999999999655 4 5999999999998887521 11 111122223322 122 23577
Q ss_pred EEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC----cEEEEecCCcCCChHHHHHHHH
Q psy8699 206 TLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG----RVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~----~vivvEe~~~~gglg~~v~~~l 278 (325)
+|+++|.-.....++.+.+..+ + .+.++++.+|-|||.+.|...+++++ .|..=||+ .+-|-.+.|.-.+
T Consensus 800 vifcSGKH~y~l~k~Re~rgak-d-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEp-rNmGaWsFVrPRF 873 (913)
T KOG0451|consen 800 VIFCSGKHYYTLAKEREKRGAK-D-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEP-RNMGAWSFVRPRF 873 (913)
T ss_pred EEEecCcchhhHHHHHHhcccc-c-ceeeEehhhcCCCchHHHHHHHHhcCChhhhccccccc-ccCCcceeechHH
Confidence 8999999999888888887665 3 48999999999999999988888864 45556666 4545444554444
No 57
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=99.07 E-value=7.8e-10 Score=99.28 Aligned_cols=145 Identities=14% Similarity=-0.000 Sum_probs=95.7
Q ss_pred hcCCCEEEEcCcCCCCcccccchhHHHHhCCCc----eeechhhHHHHHHHHHHHhccCCeEEEEecccccHHHHHHHHH
Q psy8699 19 LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHR----VFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIV 94 (325)
Q Consensus 19 ~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r----~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ra~dqi~ 94 (325)
..+.+++..-+=..... ..+.+.+.. ++. .+....+|.+++++|.|+|++|.|.++. |.++.+..+.|.|-
T Consensus 5 ~ag~~~~~~YPiTPste---i~e~~~~~~-~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~ra~t~-ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 5 EAGCDFAAAYPITPSTE---IMEYLAKYI-ADGGGDAKVVQAESEHAAMEAAIGASAAGARAMTA-TSGPGLNLMAEPLY 79 (230)
T ss_dssp HHT-SEEEE--BTTTCH---HHHHHHHHH-HCCTBB-EEEE-SSHHHHHHHHHHHHHTT--EEEE-EECCHHHHHCCCHH
T ss_pred hcCCceEEEeCCCCccH---HHHHHHHHH-HHcCCceEEEEecchHHHHHHHHHHHhcCCceEEe-ecCCcccccHhHHH
Confidence 44566666655555322 244444443 222 6677889999999999999999999999 89999999999986
Q ss_pred HHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q psy8699 95 NEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIF 170 (325)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i 170 (325)
.++.+++|.+ + + ++.| .|...++++|..|+|....+ .-++.+++|+|++|+.++...|++ .+.||++
T Consensus 80 -~a~~~~~P~V--~-~--~~~R--~g~~~g~~~~~~q~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv 150 (230)
T PF01855_consen 80 -WAAGTELPIV--I-V--VVQR--AGPSPGLSTQPEQDDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIV 150 (230)
T ss_dssp -HHHHTT--EE--E-E--EEEB-----SSSB--SB-SHHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred -HHHHcCCCEE--E-E--EEEC--CCCCCCCcCcCChhHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 6776777652 1 1 3334 35444467888888887666 557889999999999999999997 4999999
Q ss_pred ecccccc
Q psy8699 171 FEPKVLY 177 (325)
Q Consensus 171 ~~~~~l~ 177 (325)
+.+..+.
T Consensus 151 ~~Dg~~~ 157 (230)
T PF01855_consen 151 LFDGFLC 157 (230)
T ss_dssp EEECCCC
T ss_pred Eechhhh
Confidence 9887665
No 58
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.93 E-value=6.8e-09 Score=106.50 Aligned_cols=261 Identities=21% Similarity=0.309 Sum_probs=179.2
Q ss_pred hHHHHHHH--HHhcCCCEEEEcCcCCCCcccccc----------------hhHHHHhCCCceeechhhHHHHHHHHHHHh
Q psy8699 9 GFFQSSPS--QLLSSQGGVLFGEDVGFGGVFRCS----------------LGLQEKYGKHRVFNTPLSEQGIVGFGIGLA 70 (325)
Q Consensus 9 ~~~~a~~~--~~~~~~~vv~~~~D~~~~g~~~~~----------------~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA 70 (325)
.+.|.+.- ++.....+.+-+.|.++|+ |... ..+....+.=..+|.+.+|.+++|+-.|-|
T Consensus 569 ~~aE~LAfatll~eG~~iRlsGqDs~RGT-F~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs 647 (906)
T COG0567 569 GMAETLAFATLLDEGHPIRLSGQDSGRGT-FSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYS 647 (906)
T ss_pred hHHHHhcccceeccCCccccccccCCCcC-ccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhh
Confidence 44555543 7788888999999998753 3211 111111111147899999999999999999
Q ss_pred ccC--CeEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcC--CCCc
Q psy8699 71 VSG--ATAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAH--TPGI 143 (325)
Q Consensus 71 ~~G--~~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~--ip~~ 143 (325)
..- ...+|+-+|.+|. +...||.+ +...++|-- .+ +++.-.|+|.-|-|+.|.|-..++++.. --||
T Consensus 648 ~~~p~~lvlWEAQFGDFaNgAQvviDQfi-sSge~KW~r----~s-gLv~lLPHgyEGQGPEHSSaRlER~LQLcaE~Nm 721 (906)
T COG0567 648 LANPKTLVLWEAQFGDFANGAQVVIDQFI-SSGEQKWGR----MS-GLVMLLPHGYEGQGPEHSSARLERFLQLCAENNM 721 (906)
T ss_pred hcCCchhhhhhhhhcccccCCeeeecccc-ccHHHHHHH----hc-CceEEccCCCCCCCCcCccchhHHHHHhhHHhCC
Confidence 883 3444444999996 79999997 455565532 12 3666678888888999998888887664 3499
Q ss_pred EEEeeCCHHHHHHHHHHhHh--CCCcEEEecccccccccccCCCCCCc---ccC--CCceeEeeeCCcEEEEEechhHHH
Q psy8699 144 KVVIPRGPYKAKGLLLSCIK--DKDPCIFFEPKVLYRAAVEDVPEDYY---ELP--LDKADILVAGTDVTLIGWGTQVHV 216 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~a~~--~~~Pv~i~~~~~l~~~~~~~~~~~~~---~~~--~gk~~~~~~g~dv~ii~~G~~~~~ 216 (325)
+|..|+++.+...+++.-+. ...|.++..||.+.|.+.-.-+.++. .|. +.....+.+..+.+++|+|-+...
T Consensus 722 qV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvyyd 801 (906)
T COG0567 722 QVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVYYD 801 (906)
T ss_pred EEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeeccchHHH
Confidence 99999999999999996554 58999999999988865221111110 110 110001111246789999998888
Q ss_pred HHHHHHHHHhhcCC-cEEEEecccccCCCHHHHHHHHhcc---CcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 217 LREVAGLAKEQLGV-SCEVIDLVSILPWDRETVFQSARKT---GRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 217 a~~A~~~L~~~~gi-~~~vi~~~~l~P~d~~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
..+.. +++ |. ++.++.+..|.|||.+.+.+.+.++ +.++.+.|...+-|-...+...+.+
T Consensus 802 l~~~r---~~~-g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~ 865 (906)
T COG0567 802 LLEQR---EKD-GRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEE 865 (906)
T ss_pred HHHHH---hhc-CCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHHHHHHHHH
Confidence 77666 333 43 7999999999999999999988875 5677777766665544455555544
No 59
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.7e-07 Score=93.68 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=138.5
Q ss_pred chHHHHHHHHHhcCCC-EEEEcCcCCC----CcccccchhHH--HHh-------CCCceeechhhHHHHHHHHHHHhccC
Q psy8699 8 TGFFQSSPSQLLSSQG-GVLFGEDVGF----GGVFRCSLGLQ--EKY-------GKHRVFNTPLSEQGIVGFGIGLAVSG 73 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~-vv~~~~D~~~----~g~~~~~~~~~--~~~-------~p~r~~~~gIaE~~~v~~a~GlA~~G 73 (325)
..+++-+.++++.|++ +.+.++|=.. +++++.++... +.. +.+|+++ .++|+.+.|.+.|.++.|
T Consensus 405 ~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtG 483 (793)
T COG3957 405 TALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTG 483 (793)
T ss_pred HHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcC
Confidence 4567777779998888 9999999542 22333222221 111 2458888 699999999999999999
Q ss_pred CeEEEEecccccH---HHHHHHHH--HHHhh-cccccCCceeccceEEeccCcc--CC-CCCCCCChhHHHHHcC-CC-C
Q psy8699 74 ATAIAEIQFADYI---FPAFDQIV--NEAAK-YRYRSGNQFSCGNLTIRAPCMA--VG-HGALYHSQSPEAYFAH-TP-G 142 (325)
Q Consensus 74 ~~p~~~it~~~F~---~ra~dqi~--~~~~~-~~~~~~~~~~~~~~v~~~~~g~--~g-~g~th~~~~d~~~~~~-ip-~ 142 (325)
.+-+++ +|-.|+ .-++.|.- ...++ ..|+. ..++..+..+++. .+ .|-|||....+..+.+ .+ .
T Consensus 484 r~glf~-sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~----~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~ 558 (793)
T COG3957 484 RHGLFA-SYEAFAHIVDSMFNQHAKWLKVTREVEWRR----PIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDI 558 (793)
T ss_pred Ccccee-eHHHHHHHHHHHHhhhHHHHHHHHhcccCC----CCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCc
Confidence 999999 999997 33333331 11121 12222 2221222222232 23 4889998887765554 45 4
Q ss_pred cEEEeeCCHHHHHHHHHHhHhC-CCcEEEecccccccccccCCCCCC---cccCCCceeEee----e--CCcEEEEEech
Q psy8699 143 IKVVIPRGPYKAKGLLLSCIKD-KDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILV----A--GTDVTLIGWGT 212 (325)
Q Consensus 143 ~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~----~--g~dv~ii~~G~ 212 (325)
+.||.|.|++-+..++.+|++. +.-.+|..+|. +.+....-+ ....-| .-++. + ..|+++.+.|.
T Consensus 559 vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~----p~pq~~t~~qA~~~~~~G-~~iwewas~d~gepdvV~A~~Gd 633 (793)
T COG3957 559 VRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQ----PRPQWLTMEQAEKHCTDG-AGIWEWASGDDGEPDVVMACAGD 633 (793)
T ss_pred eeEecCCCCcchhhhhhHHhhccCceEEEEecCC----CcceeecHHHHHHHhhcC-cEEEEeccCCCCCCCEEEEecCC
Confidence 7999999999999999999996 44444534442 212111000 001112 11221 2 35899999998
Q ss_pred hH-HHHHHHHHHHHhhcC--CcEEEEecccc
Q psy8699 213 QV-HVLREVAGLAKEQLG--VSCEVIDLVSI 240 (325)
Q Consensus 213 ~~-~~a~~A~~~L~~~~g--i~~~vi~~~~l 240 (325)
+. .++++|+..|+++ + ++++||++.-+
T Consensus 634 ~~t~e~laAa~~L~e~-~p~l~vRvVnVvdl 663 (793)
T COG3957 634 VPTIEVLAAAQILREE-GPELRVRVVNVVDL 663 (793)
T ss_pred cchHHHHHHHHHHHHh-CccceEEEEEEecc
Confidence 55 6899999999998 8 77776665543
No 60
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.60 E-value=0.0039 Score=52.48 Aligned_cols=147 Identities=17% Similarity=0.058 Sum_probs=87.7
Q ss_pred HHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHH---hCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 11 FQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEK---YGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 11 ~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~---~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
.|++.+.+ +.+-+.++.-+.... ....+.+.+. -..-+++.+- .|++++.+|.|.++.|.++.+. |..+.+
T Consensus 2 ~e~i~~~L~~~gv~~vfg~PG~~~---~~~~~~l~~~~~~~~~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~-~~gpG~ 76 (160)
T cd07034 2 NEAVARGALAAGVDVVAAYPITPS---TEIAETLAKAVLGELGGVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGL 76 (160)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCH---HHHHHHHHHHhccCCCcEEEEeC-CHHHHHHHHHHHHhhCCcEEEe-eCcchH
Confidence 36777744 444455555554331 1123445331 1124678776 9999999999999999885555 889999
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhH---HHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSP---EAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d---~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
..+++.|.+ +...+.|. +++.+.....+.+..|..+.+ ..+++. -..++.+.+++|+.++++.|++
T Consensus 77 ~n~~~~l~~-a~~~~~P~--------v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~ 145 (160)
T cd07034 77 NLMAEALYL-AAGAELPL--------VIVVAQRPGPSTGLPKPDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFE 145 (160)
T ss_pred HHHHHHHHH-HHhCCCCE--------EEEEeeCCCCCCCCCCcCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHH
Confidence 889888874 44222221 222211111111211222232 233333 5678889999999999998887
Q ss_pred ----CCCcEEEecc
Q psy8699 164 ----DKDPCIFFEP 173 (325)
Q Consensus 164 ----~~~Pv~i~~~ 173 (325)
.++|++++.+
T Consensus 146 ~a~~~~~Pv~l~~~ 159 (160)
T cd07034 146 LAEKYRLPVIVLSD 159 (160)
T ss_pred HHHHhCCCEEEEcC
Confidence 2689999653
No 61
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.20 E-value=0.014 Score=48.84 Aligned_cols=143 Identities=16% Similarity=0.107 Sum_probs=88.4
Q ss_pred HHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhC-C-CceeechhhHHHHHHHHHHHhccCC-eEEEEecccccHHH
Q psy8699 13 SSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG-K-HRVFNTPLSEQGIVGFGIGLAVSGA-TAIAEIQFADYIFP 88 (325)
Q Consensus 13 a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~-p-~r~~~~gIaE~~~v~~a~GlA~~G~-~p~~~it~~~F~~r 88 (325)
++.+ +.+.+-+.++.-++.. ...|.+.+. + =+++.+ ..|.+++.+|.|.+..+. .+++..+.++.+..
T Consensus 2 ~i~~~L~~~Gv~~vfg~pg~~-------~~~l~~~~~~~~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n 73 (155)
T cd07035 2 ALVEALKAEGVDHVFGVPGGA-------ILPLLDALARSGIRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTN 73 (155)
T ss_pred HHHHHHHHcCCCEEEECCCCc-------hHHHHHHhccCCCEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHH
Confidence 3444 3445556666666532 233333331 1 255555 599999999999999955 45555466888888
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK---- 163 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~---- 163 (325)
+++.|. ++...+.|. +++.+..+....+ .+||..+...+++.+-.+ .+.+.+++++...+..|++
T Consensus 74 ~~~~l~-~A~~~~~Pl--------l~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~ 143 (155)
T cd07035 74 AVTGLA-NAYLDSIPL--------LVITGQRPTAGEGRGAFQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALS 143 (155)
T ss_pred HHHHHH-HHHhhCCCE--------EEEeCCCccccccCCcccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcC
Confidence 888886 455444443 2222211212222 335555566778777554 6677888999999988887
Q ss_pred C-CCcEEEecc
Q psy8699 164 D-KDPCIFFEP 173 (325)
Q Consensus 164 ~-~~Pv~i~~~ 173 (325)
. ++|++|..|
T Consensus 144 ~~~gPv~l~ip 154 (155)
T cd07035 144 GRPGPVALDLP 154 (155)
T ss_pred CCCCcEEEEec
Confidence 2 579999654
No 62
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.01 E-value=0.028 Score=47.93 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcC-CCEEEEcCcCCCC----cccccchh-HHHHh---------CCCceeechhhHHHHHHHHHHHhccCC
Q psy8699 10 FFQSSPSQLLSS-QGGVLFGEDVGFG----GVFRCSLG-LQEKY---------GKHRVFNTPLSEQGIVGFGIGLAVSGA 74 (325)
Q Consensus 10 ~~~a~~~~~~~~-~~vv~~~~D~~~~----g~~~~~~~-~~~~~---------~p~r~~~~gIaE~~~v~~a~GlA~~G~ 74 (325)
+++-+.++++.| .++-++++|=-.+ .++..++. +.++. .+++-+..-.+|+.+.|...|..+.|.
T Consensus 4 lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGr 83 (179)
T PF03894_consen 4 LGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGR 83 (179)
T ss_dssp HHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhcCC
Confidence 455666766544 4799999995422 12222221 11111 112333344899999999999999999
Q ss_pred eEEEEecccccH---HHHHHHHHH---HHhhcccccCCceeccceEEeccCcc--CC-CCCCCCChhHHHHHcC-CC-Cc
Q psy8699 75 TAIAEIQFADYI---FPAFDQIVN---EAAKYRYRSGNQFSCGNLTIRAPCMA--VG-HGALYHSQSPEAYFAH-TP-GI 143 (325)
Q Consensus 75 ~p~~~it~~~F~---~ra~dqi~~---~~~~~~~~~~~~~~~~~~v~~~~~g~--~g-~g~th~~~~d~~~~~~-ip-~~ 143 (325)
+-++. +|-.|+ .-++.|-.. .+....|.. +++.+-+..++.. .+ .|-|||....+..+.+ .| -+
T Consensus 84 hglf~-sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~----~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~ 158 (179)
T PF03894_consen 84 HGLFA-SYEAFAHIVDSMLNQHAKWLRHARELPWRA----PIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVV 158 (179)
T ss_dssp EEEEE-EEGGGGGGGHHHHHHHHHHHHHHHH-TTS-------B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-E
T ss_pred ccccc-ccchhHHHHHHHHHHHHHHHHHHHhCcCCC----CCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccc
Confidence 99999 999996 333444321 112222322 2222222222222 23 4889997777765444 45 47
Q ss_pred EEEeeCCHHHHHHHHHHhHh
Q psy8699 144 KVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~a~~ 163 (325)
.||.|.|++-+..++..|++
T Consensus 159 RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 159 RVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEE-SSHHHHHHHHHHHHH
T ss_pred eeecCCcHhHHHHHHHHHhc
Confidence 99999999999999999986
No 63
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.70 E-value=0.38 Score=48.86 Aligned_cols=244 Identities=11% Similarity=0.021 Sum_probs=131.8
Q ss_pred CCCCCccchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhccCCe-
Q psy8699 1 MGDQGYWTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVSGAT- 75 (325)
Q Consensus 1 ~~~~~~~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~G~~- 75 (325)
|.+....++..++|.+.++ .+=+.++..+... ...|.+... ++ +++.+ ..|++++.+|.|.|...-+
T Consensus 1 ~~~~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~-------~~~l~~al~~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~ 72 (557)
T PRK08199 1 MTSTPRARTGGQILVDALRANGVERVFCVPGES-------YLAVLDALHDETDIRVIVC-RQEGGAAMMAEAYGKLTGRP 72 (557)
T ss_pred CCcccccCcHHHHHHHHHHHcCCCEEEeCCCcc-------hhHHHHHhhccCCCcEEEe-ccHHHHHHHHHHHHHhcCCC
Confidence 4455566788999999554 5555555443221 223333321 21 45555 5999999999999988444
Q ss_pred EEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHH
Q psy8699 76 AIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 76 p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e 153 (325)
.++..|+.+.+..++--|. ++-..+.| +++.+..-... .-+.+|..+..++++.+-.+. +...++.+
T Consensus 73 gv~~~t~GpG~~N~~~gi~-~A~~~~~P---------vl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~-~~v~~~~~ 141 (557)
T PRK08199 73 GICFVTRGPGATNASIGVH-TAFQDSTP---------MILFVGQVARDFREREAFQEIDYRRMFGPMAKWV-AEIDDAAR 141 (557)
T ss_pred EEEEeCCCccHHHHHHHHH-HHhhcCCC---------EEEEecCCccccCCCCcccccCHHHhhhhhhcee-eecCCHHH
Confidence 4544478888876766654 33323332 22222111111 123466666678888765543 33378888
Q ss_pred HHHHHHHhHh----C-CCcEEEecccccccccccC--CCC-CCcccCCCce------eEeee-CCcEEEEEechhHHHHH
Q psy8699 154 AKGLLLSCIK----D-KDPCIFFEPKVLYRAAVED--VPE-DYYELPLDKA------DILVA-GTDVTLIGWGTQVHVLR 218 (325)
Q Consensus 154 ~~~~~~~a~~----~-~~Pv~i~~~~~l~~~~~~~--~~~-~~~~~~~gk~------~~~~~-g~dv~ii~~G~~~~~a~ 218 (325)
+...++.|++ . ++||+|-.|..+.....+. .+. .......... ..+.. ..-++|++.|.....+.
T Consensus 142 ~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~ 221 (557)
T PRK08199 142 IPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPYRRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAV 221 (557)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCHhHhhCcccccccCCcCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHH
Confidence 8888888776 2 6899999997664432110 000 0000000000 11222 34566667766555666
Q ss_pred HHHHHHHhhcCCcEEE-Ee----cccccCC--------CHHHHHHHHhccCcEEEEec
Q psy8699 219 EVAGLAKEQLGVSCEV-ID----LVSILPW--------DRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~v-i~----~~~l~P~--------d~~~l~~~~~~~~~vivvEe 263 (325)
+++..|.+++|+-+-. .. ++.-.|+ -.....+.+++.+.||++-.
T Consensus 222 ~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~ 279 (557)
T PRK08199 222 ADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGT 279 (557)
T ss_pred HHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCC
Confidence 7777776654654321 11 1111222 11234556777888888764
No 64
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=96.62 E-value=0.2 Score=51.31 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=128.0
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC-C-CceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG-K-HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~-p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
++..+++.+.++ .+-+.++.-+.-. ...|.+.+. + =+++.+ -.|++++.+|.|.|.. |...++..|+.
T Consensus 6 ~~~~~~l~~~L~~~GV~~vFGvpG~~-------~~~l~dal~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~G 77 (588)
T PRK07525 6 MTPSEAFVETLQAHGITHAFGIIGSA-------FMDASDLFPPAGIRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNG 77 (588)
T ss_pred ccHHHHHHHHHHHcCCCEEEEeCCCc-------hHHHHHHHhccCCCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 688999999654 4444444333211 233333331 1 256655 5999999999999977 65566665788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
+.+..++--|. ++-..+.|. +++.+...... ..+++|..+..++++.+-.. .+...+++++...++.|+
T Consensus 78 PG~~n~~~gi~-~A~~~~~Pv--------l~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~ 147 (588)
T PRK07525 78 PGITNFVTAVA-TAYWAHTPV--------VLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNRVF 147 (588)
T ss_pred ccHHHHHHHHH-HHhhcCCCE--------EEEeCCCCcccCCCCCCcccchhhhhhhheeE-EEECCCHHHHHHHHHHHH
Confidence 88766665554 333233332 22221111111 12346656667788876443 445577777777777777
Q ss_pred h----CCCcEEEecccccccccccC-CCCC-CcccCCCce-------eEeee-CCcEEEEEechhHHHHHHHHHHHHhhc
Q psy8699 163 K----DKDPCIFFEPKVLYRAAVED-VPED-YYELPLDKA-------DILVA-GTDVTLIGWGTQVHVLREVAGLAKEQL 228 (325)
Q Consensus 163 ~----~~~Pv~i~~~~~l~~~~~~~-~~~~-~~~~~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~~ 228 (325)
+ .++||+|-.|..+.....+. .+.. ...-+.... ..+.. ..-+++++.|.....+.+++..|.+++
T Consensus 148 ~~A~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 227 (588)
T PRK07525 148 DKAKRESGPAQINIPRDYFYGVIDVEIPQPVRLERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERL 227 (588)
T ss_pred HHHhcCCCCEEEEcChhHhhhhcccccCccccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHh
Confidence 5 47899999987654332111 1100 000000000 11223 345777777765556666666666554
Q ss_pred CCcEEEEe-------cccccCCC--------HHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVID-------LVSILPWD--------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~-------~~~l~P~d--------~~~l~~~~~~~~~vivvEe~ 264 (325)
|+-+ +. ++.-.|+- .....+.+++.+.||++--.
T Consensus 228 ~~pv--~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~ 276 (588)
T PRK07525 228 DAPV--ACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTR 276 (588)
T ss_pred CCCe--EEcccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCC
Confidence 5543 32 11112221 12334567778888888643
No 65
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.51 E-value=0.042 Score=46.90 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=87.3
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeE-EEEecccccH
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATA-IAEIQFADYI 86 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p-~~~it~~~F~ 86 (325)
+..+++.+.+ +..-+.++.-++... ....+.+.+.- -=|++.+ ..|++++.+|.|.+..+-+| ++..+..+.+
T Consensus 2 t~~~~l~~~L~~~Gv~~vfgvpG~~~---~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~ 76 (172)
T PF02776_consen 2 TGAEALAEALKANGVTHVFGVPGSGN---LPLLDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGA 76 (172)
T ss_dssp EHHHHHHHHHHHTT-SEEEEE--GGG---HHHHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHH
T ss_pred cHHHHHHHHHHHCCCeEEEEEeChhH---hHHHHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccch
Confidence 5677888844 456666665554331 11133333332 1356665 69999999999999775555 4443444555
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--CCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--GHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK- 163 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~- 163 (325)
..++.-|. ++...+.|. +++.+..+.. +.+..|+..+..++++.+-.+ .+.+.++.++...++.|++
T Consensus 77 ~n~~~~l~-~A~~~~~Pv--------l~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~ 146 (172)
T PF02776_consen 77 TNALTGLA-NAYADRIPV--------LVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRA 146 (172)
T ss_dssp HTTHHHHH-HHHHTT-EE--------EEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHH
T ss_pred HHHHHHHh-hcccceeeE--------EEEecccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHHHHH
Confidence 55555554 233233332 2222212222 224445466667888887544 6666777777777776665
Q ss_pred ----CCCcEEEeccccccc
Q psy8699 164 ----DKDPCIFFEPKVLYR 178 (325)
Q Consensus 164 ----~~~Pv~i~~~~~l~~ 178 (325)
.++|++|..|..+..
T Consensus 147 a~~~~~gPv~l~ip~dv~~ 165 (172)
T PF02776_consen 147 ATSGRPGPVYLEIPQDVQE 165 (172)
T ss_dssp HHHCSTSEEEEEEEHHHHT
T ss_pred hccCCCccEEEEcChhHhh
Confidence 489999988875543
No 66
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=96.14 E-value=0.49 Score=48.36 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=127.0
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC---ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH---RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~---r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++..+++.+.+ ..+-+.++.-+--. ...|.+.+ .+ +++.+ -.|++++.+|.|.|.. |.-.++..|.
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFGipG~~-------~~~l~dal-~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~ 72 (579)
T TIGR03457 2 MTPSEAFVEVLVANGVTHAFGIMGSA-------FMDAMDLF-PPAGIRFIPV-VHEQGAGHMADGFARVTGRMSMVIGQN 72 (579)
T ss_pred CcHHHHHHHHHHHCCCCEEEEccCcc-------hHHHHHHH-hhcCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 46678888854 45555555433211 22344433 22 56666 5999999999999966 6555665578
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
.+.+..++--|- ++-..+.|. +++.+..+... ..+.+|..+..++++.+-.+ .....++.++...++.|
T Consensus 73 GPG~~N~~~gla-~A~~~~~Pv--------l~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A 142 (579)
T TIGR03457 73 GPGVTNCVTAIA-AAYWAHTPV--------VIVTPEAGTKTIGLGGFQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRC 142 (579)
T ss_pred CchHHHHHHHHH-HHhhcCCCE--------EEEeCCCccccCCCCCCcccchhhhhhcceeE-EEecCCHHHHHHHHHHH
Confidence 888866665554 333222222 22222111111 12347766667788876443 44456777877777777
Q ss_pred Hh----CCCcEEEecccccccccccC-CCC-CCcccCCCce-------eEeee-CCcEEEEEechhHHHHHHHHHHHHhh
Q psy8699 162 IK----DKDPCIFFEPKVLYRAAVED-VPE-DYYELPLDKA-------DILVA-GTDVTLIGWGTQVHVLREVAGLAKEQ 227 (325)
Q Consensus 162 ~~----~~~Pv~i~~~~~l~~~~~~~-~~~-~~~~~~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~ 227 (325)
++ .++||+|-.|..+.....+. .+. ....-..... ..++. ..-+++++.|.....+.+++..|.++
T Consensus 143 ~~~A~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~ 222 (579)
T TIGR03457 143 FERAWREMGPAQLNIPRDYFYGEIDVEIPRPVRLDRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAER 222 (579)
T ss_pred HHHHhcCCCCEEEEeCcchhhhhcccccCcccccCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHH
Confidence 65 36899999987654333211 110 0000000000 11222 23477777777655566666666665
Q ss_pred cCCcEEE-Eeccccc----CC--------CHHHHHHHHhccCcEEEEecC
Q psy8699 228 LGVSCEV-IDLVSIL----PW--------DRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 228 ~gi~~~v-i~~~~l~----P~--------d~~~l~~~~~~~~~vivvEe~ 264 (325)
+|+-+-. ..-...- |+ ......+.+++.+.+|++-..
T Consensus 223 ~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~ 272 (579)
T TIGR03457 223 LGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTR 272 (579)
T ss_pred hCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCC
Confidence 5654321 0111111 11 112334567777888887643
No 67
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.01 E-value=0.93 Score=46.26 Aligned_cols=235 Identities=10% Similarity=0.011 Sum_probs=126.3
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--C-CceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--K-HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++..++|.+.++ .+=+.++.-+.-. ...|.+... + =+++.+ -.|++++.+|-|.|.. |...++..|+
T Consensus 4 ~~~a~~l~~~L~~~Gv~~vFgipG~~-------~~~l~~al~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~ 75 (574)
T PRK06466 4 LSGAEMLVRALRDEGVEYIYGYPGGA-------VLHIYDALFKQDKVEHILV-RHEQAATHMADGYARATGKTGVVLVTS 75 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCcc-------hhHHHHHhhccCCceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 456788888554 4455555443211 223333220 1 245555 6999999999999976 5445555588
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
++.+..++.-+. ++-..+.|. ++.+..-... .-+.+|..+..++++.+-.+ .....++.++..+++.
T Consensus 76 GPG~~N~l~gl~-~A~~~~~Pv---------l~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~r 144 (574)
T PRK06466 76 GPGATNAITGIA-TAYMDSIPM---------VVLSGQVPSTLIGEDAFQETDMVGISRPIVKH-SFMVKHASEIPEIIKK 144 (574)
T ss_pred CccHHHHHHHHH-HHHhcCCCE---------EEEecCCCccccCCCcccccchhhhhhcccee-EEEcCCHHHHHHHHHH
Confidence 888876766654 333333332 2222111111 12347766677888887664 4455678888888877
Q ss_pred hHhC-----CCcEEEeccccccccccc-C--CCCC-C---c-ccCCCce-------eEeee-CCcEEEEEechhHHHHHH
Q psy8699 161 CIKD-----KDPCIFFEPKVLYRAAVE-D--VPED-Y---Y-ELPLDKA-------DILVA-GTDVTLIGWGTQVHVLRE 219 (325)
Q Consensus 161 a~~~-----~~Pv~i~~~~~l~~~~~~-~--~~~~-~---~-~~~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~ 219 (325)
|++. ++|||+-.|..+.....+ . .+.. . + +...... ..+.. ..-++|++.|.....+.+
T Consensus 145 A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~ 224 (574)
T PRK06466 145 AFYIAQSGRPGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASA 224 (574)
T ss_pred HHHHHhcCCCCcEEEEcCHhHhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHH
Confidence 7762 689999999765321100 0 0000 0 0 0000000 01122 345777777765555666
Q ss_pred HHHHHHhhcCCcEEEEeccc---ccCCC------------HHHHHHHHhccCcEEEEec
Q psy8699 220 VAGLAKEQLGVSCEVIDLVS---ILPWD------------RETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 220 A~~~L~~~~gi~~~vi~~~~---l~P~d------------~~~l~~~~~~~~~vivvEe 263 (325)
++..|.+++|+-+ +.-.. +-|-+ .....+.+++.+.||++-.
T Consensus 225 ~l~~lae~~g~pv--~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~ 281 (574)
T PRK06466 225 LLTELAHLLNLPV--TNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGA 281 (574)
T ss_pred HHHHHHHHhCCCE--EEcCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECC
Confidence 6666666556543 32211 11211 1234456677787777754
No 68
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=95.96 E-value=1 Score=45.87 Aligned_cols=246 Identities=11% Similarity=-0.008 Sum_probs=133.0
Q ss_pred CCCCCccchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC-C-CceeechhhHHHHHHHHHHHhcc-CCeE
Q psy8699 1 MGDQGYWTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG-K-HRVFNTPLSEQGIVGFGIGLAVS-GATA 76 (325)
Q Consensus 1 ~~~~~~~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~-p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p 76 (325)
|.||-...+..+++.+.++ .+=+.++.-+.. . ...+.+.+. + =|++.+ -.|++++.+|.|.|.. |...
T Consensus 3 ~~~~~~~~~~~~~l~~~L~~~GV~~vFGvpG~----~---~~~l~~~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~g 74 (569)
T PRK09259 3 MSDQLQLTDGFHLVIDALKLNGIDTIYGVVGI----P---ITDLARLAQAEGIRYIGF-RHEQSAGNAAAAAGFLTQKPG 74 (569)
T ss_pred cccccCCCcHHHHHHHHHHHcCCCEEEeCCCc----c---hHHHHHHHhhCCCCEEee-CCHHHHHHHHHHHHHHhCCCE
Confidence 6778888888999999554 455555543321 1 222222220 1 256666 5999999999999987 5555
Q ss_pred EEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC--CC-CCCCCChhHHHHHcCCCCcEEEeeCCHHH
Q psy8699 77 IAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--GH-GALYHSQSPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 77 ~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e 153 (325)
++..|.++.+..++.-|. ++...+.|. +++.+..... +. -+++|..+..++++.+-.. .+...++.+
T Consensus 75 v~~~t~GPG~~N~l~gl~-~A~~~~~Pv--------l~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~-s~~v~~~~~ 144 (569)
T PRK09259 75 VCLTVSAPGFLNGLTALA-NATTNCFPM--------IMISGSSEREIVDLQQGDYEELDQLNAAKPFCKA-AFRVNRAED 144 (569)
T ss_pred EEEEcCCccHHHHHHHHH-HHHhcCCCE--------EEEEccCCcccccccCCCccccchhhhhhhheee-eEEcCCHHH
Confidence 655578888877766664 344333332 2222111111 11 1346656667888887554 444567888
Q ss_pred HHHHHHHhHh-----CCCcEEEecccccccccccC--C--C---C-CC-cccCCCce------eEeee-CCcEEEEEech
Q psy8699 154 AKGLLLSCIK-----DKDPCIFFEPKVLYRAAVED--V--P---E-DY-YELPLDKA------DILVA-GTDVTLIGWGT 212 (325)
Q Consensus 154 ~~~~~~~a~~-----~~~Pv~i~~~~~l~~~~~~~--~--~---~-~~-~~~~~gk~------~~~~~-g~dv~ii~~G~ 212 (325)
+...++.|++ -++||||-.|..+.....+. . + . .. ........ ..+.. ..-+++++.|.
T Consensus 145 ~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~ 224 (569)
T PRK09259 145 IGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALTSLVKVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGA 224 (569)
T ss_pred HHHHHHHHHHHhhhCCCCcEEEEeCHHHhhCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCc
Confidence 8888887776 26899999987654333210 0 0 0 00 00000000 11222 34566777776
Q ss_pred hHHHHHHHHHHHHhhcCCcEEE-EecccccCCCHH----HH-HHHHhccCcEEEEecC
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEV-IDLVSILPWDRE----TV-FQSARKTGRVIIAHEA 264 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~v-i~~~~l~P~d~~----~l-~~~~~~~~~vivvEe~ 264 (325)
....+.++...|.+++|+-+-. ..-+.+-|-+.. .. ...+++.+.||++-..
T Consensus 225 ~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~ 282 (569)
T PRK09259 225 AYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGAR 282 (569)
T ss_pred cccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCC
Confidence 5545666777776655665421 111111222211 11 2346677777777643
No 69
>PRK08322 acetolactate synthase; Reviewed
Probab=95.90 E-value=0.68 Score=46.88 Aligned_cols=207 Identities=10% Similarity=0.020 Sum_probs=113.2
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccH
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYI 86 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~ 86 (325)
+..+++.+.+ +.+=+.++.-+... .....+.+. +- .=+++.+ ..|++++.+|.|.|.. |...++..|.++.+
T Consensus 2 ~~~~~l~~~L~~~Gv~~vFg~pG~~---~~~l~dal~-~~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~ 75 (547)
T PRK08322 2 KAADLFVKCLENEGVEYIFGIPGEE---NLDLLEALR-DS-SIKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGA 75 (547)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcc---hHHHHHHHH-hc-CCcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccH
Confidence 3467777744 55555555443221 111133442 11 1255555 6999999999999988 54445554778888
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD 164 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~ 164 (325)
..++--+- ++-..+.| +++.+..-... .-+.||..+..++++.+-.+ .+...+++++..+++.|++.
T Consensus 76 ~N~~~~i~-~A~~~~~P---------ll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~ 144 (547)
T PRK08322 76 TNLVTGVA-YAQLGGMP---------MVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRL 144 (547)
T ss_pred hHHHHHHH-HHhhcCCC---------EEEEeccccccccCCCccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHH
Confidence 66666654 34433332 22222111111 12346666677888877543 56667888888888888872
Q ss_pred -----CCcEEEecccccccccccC--CCCCCcccCCCce-------eEeee-CCcEEEEEechhHHHHHHHHHHHHhhcC
Q psy8699 165 -----KDPCIFFEPKVLYRAAVED--VPEDYYELPLDKA-------DILVA-GTDVTLIGWGTQVHVLREVAGLAKEQLG 229 (325)
Q Consensus 165 -----~~Pv~i~~~~~l~~~~~~~--~~~~~~~~~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~~g 229 (325)
++||+|-.|..+.....+. ++.....-+.... ..+++ ..-++|++.|.....+.+++..|.+++|
T Consensus 145 A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~ 224 (547)
T PRK08322 145 AEEERPGAVHLELPEDIAAEETDGKPLPRSYSRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTG 224 (547)
T ss_pred HccCCCCcEEEEcChhhhhCccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhC
Confidence 5899999997665432111 1100000000101 12223 3456666676655556666667766555
Q ss_pred CcE
Q psy8699 230 VSC 232 (325)
Q Consensus 230 i~~ 232 (325)
+-+
T Consensus 225 ~pv 227 (547)
T PRK08322 225 IPF 227 (547)
T ss_pred CCE
Confidence 543
No 70
>PRK08617 acetolactate synthase; Reviewed
Probab=95.88 E-value=1.1 Score=45.56 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=115.3
Q ss_pred cchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 7 WTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 7 ~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.++..+++.+.+ +.+=+.++.-+... .....+.+.+. .=+++.+ ..|++++.+|.|.|.. |...++..|+++
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~---~~~l~~al~~~--~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~Gp 77 (552)
T PRK08617 4 KKYGADLVVDSLINQGVKYVFGIPGAK---IDRVFDALEDS--GPELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGP 77 (552)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcc---HHHHHHHHhhC--CCCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCC
Confidence 456788888854 45556555444322 11113334321 1256666 5999999999999988 444455557888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
.+..++.-+. ++...+.|. +++.+...... .-..||..+..++++.+--+ .+...++.++...++.|++
T Consensus 78 G~~N~l~gl~-~A~~~~~Pv--------lvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~ 147 (552)
T PRK08617 78 GVSNLATGLV-TATAEGDPV--------VAIGGQVKRADRLKRTHQSMDNVALFRPITKY-SAEVQDPDNLSEVLANAFR 147 (552)
T ss_pred cHhHhHHHHH-HHhhcCCCE--------EEEecCCcccccCCCCccccchhhhhhhhcce-EEEeCCHHHHHHHHHHHHH
Confidence 8866666664 344333322 22222111111 12357777777888887554 4555778888888888887
Q ss_pred ----C-CCcEEEecccccccccccC--CCCCC-cccCC-Cc------eeEeee-CCcEEEEEechhHHHHHHHHHHHHhh
Q psy8699 164 ----D-KDPCIFFEPKVLYRAAVED--VPEDY-YELPL-DK------ADILVA-GTDVTLIGWGTQVHVLREVAGLAKEQ 227 (325)
Q Consensus 164 ----~-~~Pv~i~~~~~l~~~~~~~--~~~~~-~~~~~-gk------~~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~ 227 (325)
. ++||+|-.|..+.....+. ..... ...+. .. ...++. ..-++|++.|.....+.+++..|.++
T Consensus 148 ~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~ 227 (552)
T PRK08617 148 AAESGRPGAAFVSLPQDVVDAPVTSKAIAPLSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLER 227 (552)
T ss_pred HHccCCCCcEEEeChhhhhhccccccccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHH
Confidence 2 5799999887654332211 10000 00000 00 011222 34566667775544556666666655
Q ss_pred cCCcE
Q psy8699 228 LGVSC 232 (325)
Q Consensus 228 ~gi~~ 232 (325)
+|+-+
T Consensus 228 ~~~pV 232 (552)
T PRK08617 228 TNLPV 232 (552)
T ss_pred hCCCE
Confidence 46543
No 71
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.85 E-value=1.1 Score=45.17 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=125.5
Q ss_pred cchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC--ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 7 WTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH--RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 7 ~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~--r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
..+..+++.+.+ +.+=+.++.-+.-. ...|.+.+ ++ +|+.+ -.|++++.+|.|.|.. |.-.++..|.
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~-------~~~l~dal-~~~i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~ 81 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGST-------ELPFLRDF-PDDFRYVLG-LQEAVVVGMADGYAQATGNAAFVNLHS 81 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCc-------chHHHHHH-hhcCCEEEE-ccHHHHHHHHHHHHHHhCCceEEEecc
Confidence 356788888844 45555555433211 33444444 22 56654 6999999999999986 5444555456
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC---CCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV---GHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~---g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
.+.+..++.-+. ++...+.| |++.+..-.. +.+..+|..+..++++.+-.+... ..+++++...++
T Consensus 82 gpG~~N~~~gia-~A~~~~~P---------vl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~-v~~~~~~~~~i~ 150 (530)
T PRK07092 82 AAGVGNAMGNLF-TAFKNHTP---------LVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIE-PARAEDVPAAIA 150 (530)
T ss_pred CchHHHHHHHHH-HHhhcCCC---------EEEEecCCcccccCccchhcccCHHHhhcccccceee-cCCHHHHHHHHH
Confidence 677666665554 33322222 2222211111 122323434556788887665444 377888888888
Q ss_pred HhHh----C-CCcEEEecccccccccccCCCCCCcc--cCCCc------eeEeee-CCcEEEEEechhHHHHHHHHHHHH
Q psy8699 160 SCIK----D-KDPCIFFEPKVLYRAAVEDVPEDYYE--LPLDK------ADILVA-GTDVTLIGWGTQVHVLREVAGLAK 225 (325)
Q Consensus 160 ~a~~----~-~~Pv~i~~~~~l~~~~~~~~~~~~~~--~~~gk------~~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~ 225 (325)
.|++ . ++||+|-.|..+.....+........ ..... ...++. ..-++|++.|.....+.++.+.|.
T Consensus 151 ~A~~~A~~~~~GPv~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~la 230 (530)
T PRK07092 151 RAYHIAMQPPRGPVFVSIPYDDWDQPAEPLPARTVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLA 230 (530)
T ss_pred HHHHHHhcCCCCcEEEEccHHHhhCcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHH
Confidence 8776 2 57999988875543322111100000 00000 012333 234666666665556667777776
Q ss_pred hhcCCcEEE--Eeccccc----C-------CCHHHHHHHHhccCcEEEEec
Q psy8699 226 EQLGVSCEV--IDLVSIL----P-------WDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 226 ~~~gi~~~v--i~~~~l~----P-------~d~~~l~~~~~~~~~vivvEe 263 (325)
+++|+-+-. ..-+..- | .......+.+++.+.||++-.
T Consensus 231 e~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~ 281 (530)
T PRK07092 231 ERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGA 281 (530)
T ss_pred HHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECC
Confidence 655655421 1111211 2 111234456777787777763
No 72
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.84 E-value=0.33 Score=40.98 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=74.8
Q ss_pred HHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHh-CCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHHH
Q psy8699 12 QSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKY-GKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPA 89 (325)
Q Consensus 12 ~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~-~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ra 89 (325)
+++.+ +.+.+=+.++.-++.. ...|.+.+ ..=||+- ...|..++++|+|.++.|.+|.++ +-.+.+..+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~-------~~~l~dal~~~i~~i~-~~~ee~aa~~aAg~~~~~~~~~v~-~~~sG~gn~ 72 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDN-------LKNLLPLIEKDFRHIP-LTREEEGVGICAGAYLAGKKPAIL-MQSSGLGNS 72 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHh-------HHHHHHHHHhCCcEEe-cCChHHHHHHHHHHHHhcCCcEEE-EeCCcHHHH
Confidence 34444 3344445555444321 34444444 1124442 458999999999999999999888 566666566
Q ss_pred HHHHHHHHh-hcccccCCceeccceEEeccCccCCC-CCCCCCh--hHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh--
Q psy8699 90 FDQIVNEAA-KYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQ--SPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK-- 163 (325)
Q Consensus 90 ~dqi~~~~~-~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~--~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~-- 163 (325)
+.-|. ++. ..+.|. +++.+--|..+. ...|..+ .....+..+ ++......+++++ ..++.|++
T Consensus 73 ~~~l~-~a~~~~~~Pv--------l~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a 141 (157)
T TIGR03845 73 INALA-SLNKTYGIPL--------PILASWRGVYKEKIPAQIPMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDA 141 (157)
T ss_pred HHHHH-HHHHcCCCCE--------EEEEeccCCCCCCCccccchhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHH
Confidence 66654 333 222222 111111111111 1111111 122333332 2235555667777 77777775
Q ss_pred --CCCcEEEecccc
Q psy8699 164 --DKDPCIFFEPKV 175 (325)
Q Consensus 164 --~~~Pv~i~~~~~ 175 (325)
.++|++|..++.
T Consensus 142 ~~~~gPv~il~~~~ 155 (157)
T TIGR03845 142 YENSRPVAALLDPK 155 (157)
T ss_pred HhCCCCEEEEEeCC
Confidence 479999977654
No 73
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.70 E-value=2.6 Score=42.83 Aligned_cols=242 Identities=10% Similarity=0.008 Sum_probs=128.3
Q ss_pred CccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 5 GYWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 5 ~~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
..+++..+++.+.+ +.+-+.++.-+... .....+.+.+ - .=+++.+ ..|++++.+|-|-|.. |...++..|+
T Consensus 5 ~~~~~~~~~l~~~L~~~Gv~~vFgipG~~---~~~l~~al~~-~-~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~ 78 (561)
T PRK06048 5 TEKMTGARAIIKCLEKEGVEVIFGYPGGA---IIPVYDELYD-S-DLRHILV-RHEQAAAHAADGYARATGKVGVCVATS 78 (561)
T ss_pred cccccHHHHHHHHHHHcCCCEEEECCCcc---hHHHHHHHhh-C-CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 34567789999854 55566555543221 1111334422 1 1256666 6999999999999976 6555555578
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
.+.+..++.-|. ++-..+.|. +++.+.......+ ..+|..+..++++.+-.. .+.-.++.++..+++.|
T Consensus 79 GpG~~n~~~gl~-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A 148 (561)
T PRK06048 79 GPGATNLVTGIA-TAYMDSVPI--------VALTGQVPRSMIGNDAFQEADITGITMPITKH-NYLVQDAKDLPRIIKEA 148 (561)
T ss_pred CCcHHHHHHHHH-HHhhcCCCE--------EEEeccCCccccCCCCccccchhhhccCcceE-EEEeCCHHHHHHHHHHH
Confidence 898877766665 343333332 2222111111111 234545555677766433 23346778888888888
Q ss_pred Hh-----CCCcEEEecccccccccccC-CCC----CCccc-CCCce-------eEeee-CCcEEEEEechhHHHHHHHHH
Q psy8699 162 IK-----DKDPCIFFEPKVLYRAAVED-VPE----DYYEL-PLDKA-------DILVA-GTDVTLIGWGTQVHVLREVAG 222 (325)
Q Consensus 162 ~~-----~~~Pv~i~~~~~l~~~~~~~-~~~----~~~~~-~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~~ 222 (325)
++ .++||||-.|..+.....+. .+. ..+.. ..... ..+.. ..-++|++.|.....+.+++.
T Consensus 149 ~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~ 228 (561)
T PRK06048 149 FHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKVELRGYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELV 228 (561)
T ss_pred HHHHhcCCCCeEEEecChhhhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHH
Confidence 77 26899999986543222110 010 00000 00000 11222 345677777776555666666
Q ss_pred HHHhhcCCcEEEEecc---cccCCC------------HHHHHHHHhccCcEEEEecC
Q psy8699 223 LAKEQLGVSCEVIDLV---SILPWD------------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 223 ~L~~~~gi~~~vi~~~---~l~P~d------------~~~l~~~~~~~~~vivvEe~ 264 (325)
.|.+++|+-+ +.-. ..-|-+ .....+.+++.+.|+++...
T Consensus 229 ~lae~lg~pV--~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~ 283 (561)
T PRK06048 229 ELAETIPAPV--TTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGAR 283 (561)
T ss_pred HHHHHhCCCE--EEccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 6665545543 3111 111111 12335567778888888754
No 74
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.67 E-value=0.79 Score=46.73 Aligned_cols=154 Identities=11% Similarity=-0.035 Sum_probs=91.8
Q ss_pred ccchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 6 YWTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 6 ~~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
++++..++|.+.++ .+-+.++..+.-. .....+.+. +. +=+++.+ ..|++++.+|.|.|.. |...++..|+.
T Consensus 14 ~~~~~~~~i~~~L~~~Gv~~vFg~pG~~---~~~l~~al~-~~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~G 87 (571)
T PRK07710 14 KLMTGAQMLIEALEKEGVEVIFGYPGGA---VLPLYDALY-DC-GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSG 87 (571)
T ss_pred ccchHHHHHHHHHHHcCCCEEEeCCCcc---hHHHHHHHH-hc-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 34567889988554 4455455443221 111133332 22 3477766 8999999999999977 54455554788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
+.+..++--|. ++-..+.| |++.+. ..... .-+.+|..+..++++.+-.+. +...++.++..+++.|
T Consensus 88 PG~~N~~~gl~-~A~~~~~P---------vl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~-~~v~~~~~~~~~i~~A 156 (571)
T PRK07710 88 PGATNVVTGLA-DAMIDSLP---------LVVFTGQVATSVIGSDAFQEADIMGITMPVTKHN-YQVRKASDLPRIIKEA 156 (571)
T ss_pred ccHHHHHHHHH-HHhhcCCC---------EEEEeccCCccccCCCCccccchhhhhhcccceE-EecCCHHHHHHHHHHH
Confidence 88766665554 33322332 222221 11111 112355566778888875553 3446777887888887
Q ss_pred Hh----C-CCcEEEeccccc
Q psy8699 162 IK----D-KDPCIFFEPKVL 176 (325)
Q Consensus 162 ~~----~-~~Pv~i~~~~~l 176 (325)
++ . ++||+|-.|..+
T Consensus 157 ~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 157 FHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred HHHHhcCCCCcEEEEcChhH
Confidence 76 2 599999998754
No 75
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=95.63 E-value=3 Score=42.31 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=124.4
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC--CCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+..+++.+.+ +.+=+.++..+... ...|.+.+. .=+++.+ ..|++++.+|.|.|.. |...++..|+++
T Consensus 2 ~~~~~l~~~L~~~Gv~~vFg~pG~~-------~~~l~~al~~~~i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~Gp 73 (548)
T PRK08978 2 NGAQWVVHALRAQGVDTVFGYPGGA-------IMPVYDALYDGGVEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGP 73 (548)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcc-------hHHHHHHHHhcCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 4567788755 44455555444321 223333320 1256555 6999999999999987 655555558889
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
.+..++--+. ++-..+.|. +++.+...... .-+.+|..+..++++.+-...... .++.++..+++.|++
T Consensus 74 G~~n~~~~l~-~A~~~~~Pv--------l~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~ 143 (548)
T PRK08978 74 GATNLITGLA-DALLDSVPV--------VAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFE 143 (548)
T ss_pred cHHHHHHHHH-HHhhcCCCE--------EEEecCCCccccCCCCCcccchhccccCceeeEEEE-CCHHHHHHHHHHHHH
Confidence 8866666654 343333322 22221111111 112366666667888775554333 578888888888886
Q ss_pred -----CCCcEEEecccccccccccC-CCCCCc--ccCCCce------eEeee-CCcEEEEEechhHHHHHHHHHHHHhhc
Q psy8699 164 -----DKDPCIFFEPKVLYRAAVED-VPEDYY--ELPLDKA------DILVA-GTDVTLIGWGTQVHVLREVAGLAKEQL 228 (325)
Q Consensus 164 -----~~~Pv~i~~~~~l~~~~~~~-~~~~~~--~~~~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~~ 228 (325)
.++||+|-.|..+.....+. .+.... ....... ..++. ..-+++++.|.....+.+.+..|.+++
T Consensus 144 ~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l 223 (548)
T PRK08978 144 IASSGRPGPVLVDIPKDIQLAEGELEPHLTTVENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAAT 223 (548)
T ss_pred HHhcCCCCcEEEecChhhhhccccccccccccCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHH
Confidence 25899999987553322110 000000 0000000 11222 345777777765455566666666554
Q ss_pred CCcEEEEeccc--c----cCC--------CHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVS--I----LPW--------DRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~--l----~P~--------d~~~l~~~~~~~~~vivvEe~ 264 (325)
|+-+- -.... + .|+ ........+++.+.|+++-..
T Consensus 224 ~~Pv~-tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~ 272 (548)
T PRK08978 224 GMPAV-ATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGAR 272 (548)
T ss_pred CCCEE-EccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCC
Confidence 66541 11111 1 121 112344566778888877643
No 76
>PRK12474 hypothetical protein; Provisional
Probab=95.55 E-value=3 Score=41.95 Aligned_cols=242 Identities=10% Similarity=0.025 Sum_probs=128.8
Q ss_pred CccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEE
Q psy8699 5 GYWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAE 79 (325)
Q Consensus 5 ~~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~ 79 (325)
|.+++..++|.+.+ +.+=+.++.-+- +. ...|.+... ++ +++.+ -.|++++.+|-|-|.. |...++.
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFGvpG----~~---~~~l~dal~~~~~i~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~ 73 (518)
T PRK12474 2 GQTMNGADSVVDTLLNCGVEVCFANPG----TS---EMHFVAALDRVPRMRPVLC-LFEGVVTGAADGYGRIAGKPAVTL 73 (518)
T ss_pred CcCccHHHHHHHHHHHCCCCEEEECCC----cc---hHHHHHHhhccCCceEEEe-cchHHHHHHHHHHHHHhCCCEEEE
Confidence 46677889999854 455555443321 11 223333320 22 66666 5999999999999976 6555555
Q ss_pred ecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHH
Q psy8699 80 IQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLL 158 (325)
Q Consensus 80 it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~ 158 (325)
.|+.+....++--+-+ +-..+.|. +++.+...... ....||..+..++++.+-.+ .+...++.++..++
T Consensus 74 ~t~GpG~~N~~~gl~~-A~~d~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i 143 (518)
T PRK12474 74 LHLGPGLANGLANLHN-ARRAASPI--------VNIVGDHAVEHLQYDAPLTSDIDGFARPVSRW-VHRSASAGAVDSDV 143 (518)
T ss_pred EccchhHhHhHHHHHH-HhhcCCCE--------EEEeccCchhhcCCCCccccCHHHhhhcccce-eeecCCHHHHHHHH
Confidence 5888887666555442 32222221 22221111111 11234444556788876443 44568889998888
Q ss_pred HHhHh---C--CCcEEEecccccccccccC-C-CCCCcccCC-Cce------eEeee-CCcEEEEEechhHHHHHHHHHH
Q psy8699 159 LSCIK---D--KDPCIFFEPKVLYRAAVED-V-PEDYYELPL-DKA------DILVA-GTDVTLIGWGTQVHVLREVAGL 223 (325)
Q Consensus 159 ~~a~~---~--~~Pv~i~~~~~l~~~~~~~-~-~~~~~~~~~-gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~~ 223 (325)
+.|++ . .+||+|-.|..+.....+. . +......+. ... ..+.. ..-+++++.|.....+.+++..
T Consensus 144 ~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~ 223 (518)
T PRK12474 144 ARAVQAAQSAPGGIATLIMPADVAWNEAAYAAQPLRGIGPAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGR 223 (518)
T ss_pred HHHHHHHhcCCCCcEEEEechhhhcccccCCcCCCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHH
Confidence 88886 2 5899999997654322110 0 000000000 000 11222 3456666666554556666666
Q ss_pred HHhhcCCcEEEEe-------cccc-----cCCCHHHHHHHHhccCcEEEEecC
Q psy8699 224 AKEQLGVSCEVID-------LVSI-----LPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 224 L~~~~gi~~~vi~-------~~~l-----~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|.++.|+-+-.-. -..+ .|+......+.++..+.|+++--.
T Consensus 224 lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~lG~~ 276 (518)
T PRK12474 224 IQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLVLVGAK 276 (518)
T ss_pred HHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEEEECCC
Confidence 6665566542110 0112 133344455667777877777543
No 77
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=95.53 E-value=2.5 Score=43.60 Aligned_cols=238 Identities=12% Similarity=0.019 Sum_probs=127.6
Q ss_pred cchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEec
Q psy8699 7 WTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQ 81 (325)
Q Consensus 7 ~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it 81 (325)
+++..+++.+.++ .+=+.++.-.- +. ...|.+... ++ +++.+ -.|++++.+|.|.|.. |...++..|
T Consensus 30 ~~~~a~~l~~~L~~~GV~~vFgipG----~~---~~~l~dal~~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t 101 (612)
T PRK07789 30 RMTGAQAVVRSLEELGVDVVFGIPG----GA---ILPVYDPLFDSTKVRHVLV-RHEQGAGHAAEGYAQATGRVGVCMAT 101 (612)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCC----cc---hHHHHHHHhccCCceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3566899998655 44444443221 11 223333220 11 55555 6999999999999977 655565558
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
.++.+..++--|. ++-..+.|. +++.+...... ....+|..+..++++.+-.+ .+...++.++..+++.
T Consensus 102 ~GPG~~N~l~gl~-~A~~~~~Pl--------lvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~ 171 (612)
T PRK07789 102 SGPGATNLVTPIA-DANMDSVPV--------VAITGQVGRGLIGTDAFQEADIVGITMPITKH-NFLVTDADDIPRVIAE 171 (612)
T ss_pred CCccHHHHHHHHH-HHhhcCCCE--------EEEecCCCccccCCCcCcccchhhhhhcceeE-EEEcCCHHHHHHHHHH
Confidence 8898866666664 344333332 22221111111 12346666667788877544 3345788888888888
Q ss_pred hHhC-----CCcEEEecccccccccccC-CCC----CCc-ccCCCce-------eEeee-CCcEEEEEechhHHHHHHHH
Q psy8699 161 CIKD-----KDPCIFFEPKVLYRAAVED-VPE----DYY-ELPLDKA-------DILVA-GTDVTLIGWGTQVHVLREVA 221 (325)
Q Consensus 161 a~~~-----~~Pv~i~~~~~l~~~~~~~-~~~----~~~-~~~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~ 221 (325)
|++. ++||+|-.|..+.....+. .+. ... +...... ..+.. ..-++|++.|.....+.+++
T Consensus 172 A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l 251 (612)
T PRK07789 172 AFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLPGYRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAEL 251 (612)
T ss_pred HHHHHhcCCCceEEEEEccchhhcccccccCccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 8862 6899999887654332110 010 000 0000000 11222 34577777777555666676
Q ss_pred HHHHhhcCCcEEEEec---ccccCCC------------HHHHHHHHhccCcEEEEecC
Q psy8699 222 GLAKEQLGVSCEVIDL---VSILPWD------------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 222 ~~L~~~~gi~~~vi~~---~~l~P~d------------~~~l~~~~~~~~~vivvEe~ 264 (325)
..|.+++|+-+ +.- +.+-|-+ .....+.+++.+.||++-..
T Consensus 252 ~~lae~l~~PV--~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~ 307 (612)
T PRK07789 252 RELAELTGIPV--VTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGAR 307 (612)
T ss_pred HHHHHHHCCCE--EEcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCC
Confidence 66666545543 311 1111211 12234567778888887643
No 78
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=95.52 E-value=0.89 Score=46.36 Aligned_cols=243 Identities=12% Similarity=0.016 Sum_probs=128.8
Q ss_pred CccchHHHHHHHHHh-cCCCEEE-EcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEe
Q psy8699 5 GYWTGFFQSSPSQLL-SSQGGVL-FGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEI 80 (325)
Q Consensus 5 ~~~~~~~~a~~~~~~-~~~~vv~-~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~i 80 (325)
.++++..+++.+.++ .+-+.++ +-++-. ....+.+.+ . ++ |++.+ -.|++++.+|.|.|.. |...++..
T Consensus 7 ~~~~~~~~~i~~~L~~~Gv~~vFgipG~~~----~~l~dal~~-~-~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~ 79 (566)
T PRK07282 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAV----LPLYDAIYN-F-EGIRHILA-RHEQGALHEAEGYAKSTGKLGVAVV 79 (566)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEecCCcch----HHHHHHHhh-c-CCceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 355677899998655 4444444 333311 111333322 2 22 67766 5999999999999976 65556565
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
|+.+.+..++.-|. ++-..+.|. +++.+....... ...+|..+..++++.+-.+.. ...++.++..+++
T Consensus 80 t~GPG~~n~~~gla-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~ 149 (566)
T PRK07282 80 TSGPGATNAITGIA-DAMSDSVPL--------LVFTGQVARAGIGKDAFQEADIVGITMPITKYNY-QIRETADIPRIIT 149 (566)
T ss_pred CCCccHHHHHHHHH-HHhhcCCCE--------EEEecccccccCCCCCccccChhchhcCCCceeE-EcCCHHHHHHHHH
Confidence 88998877766664 333233332 222211111111 224555666677877655433 4467788888888
Q ss_pred HhHhC-----CCcEEEecccccccccccC-----CCCCCccc--CCCce------eEeee-CCcEEEEEechhHHHHHHH
Q psy8699 160 SCIKD-----KDPCIFFEPKVLYRAAVED-----VPEDYYEL--PLDKA------DILVA-GTDVTLIGWGTQVHVLREV 220 (325)
Q Consensus 160 ~a~~~-----~~Pv~i~~~~~l~~~~~~~-----~~~~~~~~--~~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A 220 (325)
.|++. ++|||+-.|..+.....+. .+...+.. +.... ..+.. ..-++|++.|.....+.++
T Consensus 150 ~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~ 229 (566)
T PRK07282 150 EAVHIATTGRPGPVVIDLPKDVSALETDFIYDPEVNLPSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATE 229 (566)
T ss_pred HHHHHHhcCCCCeEEEeCChhhhhhhhcccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHH
Confidence 77762 5899999887543222110 00000000 00000 11222 3467777777765556666
Q ss_pred HHHHHhhcCCcEE-EEecccccCCC------------HHHHHHHHhccCcEEEEecC
Q psy8699 221 AGLAKEQLGVSCE-VIDLVSILPWD------------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 221 ~~~L~~~~gi~~~-vi~~~~l~P~d------------~~~l~~~~~~~~~vivvEe~ 264 (325)
...|.+++|+-+- =..-+.+-|=+ .....+.+++.+.|+++-..
T Consensus 230 l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~ 286 (566)
T PRK07282 230 LNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSR 286 (566)
T ss_pred HHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 6666665465431 11111111211 12334566778888887543
No 79
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.49 E-value=0.35 Score=48.95 Aligned_cols=171 Identities=11% Similarity=0.052 Sum_probs=99.7
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCC
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALY 128 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th 128 (325)
+++.+ ..|++++.+|-|.|.. |...++..|+.+.+..++.-+. ++...+.|. +++.+...... ....|
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~-~A~~~~~Pv--------l~I~G~~~~~~~~~~~~ 107 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLA-TANSEGDPV--------VAIGGQVKRADLLKLTH 107 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHH-HHhhcCCCE--------EEEeCCCcccccccCcc
Confidence 56666 4999999999999966 6555655588998866766664 343333322 22221111111 23458
Q ss_pred CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEecccccccccccC--CCCC-CcccCC-Cc----
Q psy8699 129 HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----D-KDPCIFFEPKVLYRAAVED--VPED-YYELPL-DK---- 195 (325)
Q Consensus 129 ~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~-~~Pv~i~~~~~l~~~~~~~--~~~~-~~~~~~-gk---- 195 (325)
|..++.++++.+-.. .....++.++...++.|++ . ++||+|-.|..+.....+. .+.. ...... ..
T Consensus 108 q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (539)
T TIGR02418 108 QSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYAPKLGAAPDDAID 186 (539)
T ss_pred cccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCcccccccCcccCCCCCCCCHHHHH
Confidence 888888899987654 3444778888777777776 2 5899999987654332211 1100 000000 00
Q ss_pred --eeEeee-CCcEEEEEechhHHHHHHHHHHHHhhcCCcE
Q psy8699 196 --ADILVA-GTDVTLIGWGTQVHVLREVAGLAKEQLGVSC 232 (325)
Q Consensus 196 --~~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~ 232 (325)
...++. ..-++|++.|.....+.++...|.++.|+-+
T Consensus 187 ~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 187 EVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred HHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 011222 3457777878765666677777766556543
No 80
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.49 E-value=0.9 Score=46.15 Aligned_cols=237 Identities=12% Similarity=0.030 Sum_probs=125.2
Q ss_pred HHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 10 FFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 10 ~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
..++|.+.+ +.+-+.++.-+.-. ...|.+... ++ +++.+ -.|++++.+|.|.|.. |...++..|+++
T Consensus 3 ~~~~l~~~L~~~Gv~~vFgvpG~~-------~~~l~~~l~~~~~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~Gp 74 (558)
T TIGR00118 3 GAEAIIESLKDEGVKTVFGYPGGA-------ILPIYDALYNDSGIEHILV-RHEQGAAHAADGYARASGKVGVVLVTSGP 74 (558)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcc-------hHHHHHHhhccCCceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 456777744 45555555433211 233343331 22 66666 5999999999999966 544455558889
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
.+..++.-+. .+...+.|. +++.+...... ....+|..+..++++.+-.+. ....++.++...++.|++
T Consensus 75 G~~n~l~~i~-~A~~~~~Pv--------l~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~v~~A~~ 144 (558)
T TIGR00118 75 GATNLVTGIA-TAYMDSIPM--------VVFTGQVPTSLIGSDAFQEADILGITMPITKHS-FQVKSAEDIPRIIKEAFH 144 (558)
T ss_pred cHHHHHHHHH-HHHhcCCCE--------EEEecCCCccccCCCCCcccChhhhhcCcccee-EEeCCHHHHHHHHHHHHH
Confidence 8877766665 344333332 22221111111 123466666677888775543 334678888888888886
Q ss_pred C-----CCcEEEecccccccccccC-CCC-C---Cc-ccCCCce-------eEeee-CCcEEEEEechhHHHHHHHHHHH
Q psy8699 164 D-----KDPCIFFEPKVLYRAAVED-VPE-D---YY-ELPLDKA-------DILVA-GTDVTLIGWGTQVHVLREVAGLA 224 (325)
Q Consensus 164 ~-----~~Pv~i~~~~~l~~~~~~~-~~~-~---~~-~~~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L 224 (325)
. ++||||-.|..+....... .+. . .. +...... ..+.. ..-++|++.|.....+.++...|
T Consensus 145 ~A~~~~~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~l 224 (558)
T TIGR00118 145 IATTGRPGPVLVDLPKDVTTAEIEYPYPEKVNLPGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKEL 224 (558)
T ss_pred HHhcCCCCeEEEEcChhhhhhhccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHH
Confidence 2 6899999887653222110 000 0 00 0000000 11122 34566677776545566666666
Q ss_pred HhhcCCcEEE-Eeccccc----CC--------CHHHHHHHHhccCcEEEEecC
Q psy8699 225 KEQLGVSCEV-IDLVSIL----PW--------DRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 225 ~~~~gi~~~v-i~~~~l~----P~--------d~~~l~~~~~~~~~vivvEe~ 264 (325)
.+++|+-+-. ..-+-+- |+ ......+.+++.+.||++-..
T Consensus 225 ae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~ 277 (558)
T TIGR00118 225 AERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGAR 277 (558)
T ss_pred HHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 6654554311 1111111 11 012234566778888888754
No 81
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.45 E-value=0.087 Score=50.63 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=68.5
Q ss_pred HhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-
Q psy8699 46 KYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG- 123 (325)
Q Consensus 46 ~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g- 123 (325)
+.++.+++-. -+|..++++|+|+.++ |.+|++. +-.+.+..+.+.|. +++. ...+.+++- +++.-+ |--|
T Consensus 23 ~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~-mQnSGlGn~vN~l~-SL~~---~~~y~iP~l-~~i~~R-G~~g~ 94 (361)
T TIGR03297 23 NNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVY-MQNSGLGNAVNPLT-SLAD---TEVYDIPLL-LIVGWR-GEPGV 94 (361)
T ss_pred cCCCceEEec-CCchHHHHHHHHHHHhcCCccEEE-EecCchhhhhhHHH-hhcc---ccccCcCee-EEEecC-CCCCC
Confidence 4522356655 4899999999999999 9999999 46666666666664 3321 111122221 222111 2112
Q ss_pred C-CCCCCChhH--HHHHcCCCCcEEEe-eCCHHHHHHHHHH----hHhCCCcEEEecccccc
Q psy8699 124 H-GALYHSQSP--EAYFAHTPGIKVVI-PRGPYKAKGLLLS----CIKDKDPCIFFEPKVLY 177 (325)
Q Consensus 124 ~-g~th~~~~d--~~~~~~ip~~~v~~-P~~~~e~~~~~~~----a~~~~~Pv~i~~~~~l~ 177 (325)
. -+-|..+.. ..++..+ ++..+. |.+..|....+.. +++.+.|+.+..+++.-
T Consensus 95 ~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 95 HDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 1 233433332 3556554 333333 3556665555554 44569999998887543
No 82
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.43 E-value=1.2 Score=45.57 Aligned_cols=240 Identities=11% Similarity=-0.027 Sum_probs=127.9
Q ss_pred CccchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 5 GYWTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 5 ~~~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
-++++..++|.+.++ .+=+.++.-+.-. ....++.+.+. .=+++.+ -.|++++.+|-|.|.. |...++..|+
T Consensus 12 ~~~~~~a~~l~~~L~~~GV~~vFGipG~~---~~~l~dal~~~--~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~ 85 (570)
T PRK06725 12 CEEVTGAGHVIQCLKKLGVTTVFGYPGGA---ILPVYDALYES--GLKHILT-RHEQAAIHAAEGYARASGKVGVVFATS 85 (570)
T ss_pred cccccHHHHHHHHHHHcCCCEEEEcCCcc---hHHHHHHHHhc--CCcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 345677899998554 4445444333211 11113333221 1256665 5999999999999976 6455555588
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
++.+..++--|- ++-..+.| |++.+...... .+ ..+|..+..++++.+-.+ .+...+++++..+++.
T Consensus 86 GpG~~N~~~gla-~A~~~~~P---------vl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~ 154 (570)
T PRK06725 86 GPGATNLVTGLA-DAYMDSIP---------LVVITGQVATPLIGKDGFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQE 154 (570)
T ss_pred CccHHHHHHHHH-HHhhcCcC---------EEEEecCCCcccccCCCCcccchhhhhhcccee-EEEcCCHHHHHHHHHH
Confidence 998876665554 23322232 22222111111 11 235555566788877554 3445788898888888
Q ss_pred hHhC-----CCcEEEecccccccccccC-CCC----CCccc-CCCce-------eEeee-CCcEEEEEechhHHHHHHHH
Q psy8699 161 CIKD-----KDPCIFFEPKVLYRAAVED-VPE----DYYEL-PLDKA-------DILVA-GTDVTLIGWGTQVHVLREVA 221 (325)
Q Consensus 161 a~~~-----~~Pv~i~~~~~l~~~~~~~-~~~----~~~~~-~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~ 221 (325)
|++. ++|||+-.|..+.....+. .+. ..+.. +.... ..++. ..-++|++.|.....+.+++
T Consensus 155 A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l 234 (570)
T PRK06725 155 AFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVVEIPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEEL 234 (570)
T ss_pred HHHHHhcCCCCcEEEccccchhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHH
Confidence 8873 6999998887554322110 000 00000 00000 11222 24577777777555566666
Q ss_pred HHHHhhcCCcEEEEec---ccccCCC------------HHHHHHHHhccCcEEEEec
Q psy8699 222 GLAKEQLGVSCEVIDL---VSILPWD------------RETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 222 ~~L~~~~gi~~~vi~~---~~l~P~d------------~~~l~~~~~~~~~vivvEe 263 (325)
..|.+++|+-+ +.- +..-|-+ .....+.+++.+.||++-.
T Consensus 235 ~~lae~~~~PV--~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~ 289 (570)
T PRK06725 235 IEFARENRIPV--VSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGV 289 (570)
T ss_pred HHHHHHhCCCE--EECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCC
Confidence 66666545543 321 1111111 1234456777888888764
No 83
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.28 E-value=2.8 Score=42.70 Aligned_cols=237 Identities=12% Similarity=-0.001 Sum_probs=127.0
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++-.++|.+.+ +..-+.++.-+--. ...|.+... ++ +++.+ -.|++++.+|.|.|.. |...++..|+
T Consensus 3 ~~~~~~l~~~L~~~Gv~~vFgipG~~-------~~~l~~~l~~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~ 74 (563)
T PRK08527 3 LSGSQMVCEALKEEGVKVVFGYPGGA-------ILNIYDEIYKQNYFKHILT-RHEQAAVHAADGYARASGKVGVAIVTS 74 (563)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcc-------hHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECC
Confidence 45578888844 45555555433211 223333220 11 56555 6999999999999966 5555655588
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
++.+..++.-+. ++-..+.|. +++.+...... ....+|..+..++++.+-.. .....+++++..+++.|
T Consensus 75 GpG~~n~~~gla-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A 144 (563)
T PRK08527 75 GPGFTNAVTGLA-TAYMDSIPL--------VLISGQVPNSLIGTDAFQEIDAVGISRPCVKH-NYLVKSIEELPRILKEA 144 (563)
T ss_pred CCcHHHHHHHHH-HHhhcCCCE--------EEEecCCCccccCCCCCcccchhhhhhcccce-EEEcCCHHHHHHHHHHH
Confidence 998877766664 343233322 22221111111 11246656666788876543 44568899999999998
Q ss_pred HhC-----CCcEEEecccccccccccC-CCC----CCcccC--CCce------eEeee-CCcEEEEEechhHHHHHHHHH
Q psy8699 162 IKD-----KDPCIFFEPKVLYRAAVED-VPE----DYYELP--LDKA------DILVA-GTDVTLIGWGTQVHVLREVAG 222 (325)
Q Consensus 162 ~~~-----~~Pv~i~~~~~l~~~~~~~-~~~----~~~~~~--~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~ 222 (325)
++. .+||||-.|..+.....+. .+. ..+.-. .... ..+.+ ..-++|++.|.....+.+++.
T Consensus 145 ~~~a~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~ 224 (563)
T PRK08527 145 FYIARSGRPGPVHIDIPKDVTATLGEFEYPKEISLKTYKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIR 224 (563)
T ss_pred HHHHhcCCCCcEEEEcCHhHhhhhhccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHH
Confidence 872 5899999887553322110 010 000000 0000 11223 234666667765555666766
Q ss_pred HHHhhcCCcEEEEecc---cc----cCCC--------HHHHHHHHhccCcEEEEecC
Q psy8699 223 LAKEQLGVSCEVIDLV---SI----LPWD--------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 223 ~L~~~~gi~~~vi~~~---~l----~P~d--------~~~l~~~~~~~~~vivvEe~ 264 (325)
.|.+.+|+-+ +.-. .+ .|+- .....+.+.+.+.||++-..
T Consensus 225 ~lae~~~~pV--~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~ 279 (563)
T PRK08527 225 ELVKKTGIPA--VETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGAR 279 (563)
T ss_pred HHHHHHCCCE--EEccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCC
Confidence 6666556544 3111 11 1221 11234567778888888654
No 84
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.28 E-value=0.34 Score=41.08 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=73.0
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-C-CCCC
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-G-HGAL 127 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g-~g~t 127 (325)
+++.+ -.|+++..+|-|.|.. |...++..+..+.+..++--+.+ +...+.| |++.+..... . ..+.
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~-A~~~~~P---------vl~I~g~~~~~~~~~~~ 108 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYD-AKRDRAP---------VLAIAGQVPTDELGTDY 108 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH-HHhcCCC---------EEEEecCCcccccCCCC
Confidence 44444 6999999999999988 54445454778887777666653 3322332 2222211111 1 1235
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecccc
Q psy8699 128 YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKV 175 (325)
Q Consensus 128 h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~ 175 (325)
+|..+...+++.+-.+ ...+.++.++...++.|++ -++||+|-.|..
T Consensus 109 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 109 FQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred CcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7766777888888665 5556788888888888876 379999977653
No 85
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=95.10 E-value=1.8 Score=44.09 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=112.3
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC-CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG-KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~-p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+-.++|.+.+ +.+-+.++.-+... .....+.+.+... ++ +++.+ ..|++++.+|.|.|.. |...++..|+.+
T Consensus 3 ~~~~~l~~~L~~~GV~~vFg~pG~~---~~~l~dal~~~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~Gp 78 (572)
T PRK06456 3 TGARILVDSLKREGVKVIFGIPGLS---NMQIYDAFVEDLANGELRHVLM-RHEQAAAHAADGYARASGVPGVCTATSGP 78 (572)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcc---hHHHHHHHHhhccCCCCeEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 3467777744 45555555443211 1112344433210 11 45555 6999999999999977 544454447899
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
.+..++.-|. ++-..+.|. +++.+...... .-..+|..+..++++.+--... ...+++++...++.|++
T Consensus 79 G~~N~l~gi~-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~-~v~~~~~~~~~l~~A~~ 148 (572)
T PRK06456 79 GTTNLVTGLI-TAYWDSSPV--------IAITGQVPRSVMGKMAFQEADAMGVFENVTKYVI-GIKRIDEIPQWIKNAFY 148 (572)
T ss_pred CHHHHHHHHH-HHHhhCCCE--------EEEecCCCccccCCCCccccchhhhhhccceeEE-EeCCHHHHHHHHHHHHH
Confidence 8877766664 333233322 22221111111 1133555666788888755533 34678888888887776
Q ss_pred -----CCCcEEEecccccccccccC--CCC-C---Cc-ccC--CCce------eEeee-CCcEEEEEechhHHHHHHHHH
Q psy8699 164 -----DKDPCIFFEPKVLYRAAVED--VPE-D---YY-ELP--LDKA------DILVA-GTDVTLIGWGTQVHVLREVAG 222 (325)
Q Consensus 164 -----~~~Pv~i~~~~~l~~~~~~~--~~~-~---~~-~~~--~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~ 222 (325)
..+||+|-.|.-+.....+. .+. . .+ +.+ .... ..++. ..-++|++.|.....+.+++.
T Consensus 149 ~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~ 228 (572)
T PRK06456 149 IATTGRPGPVVIDIPRDIFYEKMEEIKWPEKPLVKGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVL 228 (572)
T ss_pred HHhcCCCCcEEEecChhHhhcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHH
Confidence 26999999886543322111 100 0 00 000 0000 11222 345777777775556677777
Q ss_pred HHHhhcCCcE
Q psy8699 223 LAKEQLGVSC 232 (325)
Q Consensus 223 ~L~~~~gi~~ 232 (325)
.|.+++|+-+
T Consensus 229 ~lae~~~~pv 238 (572)
T PRK06456 229 ELAELLHIPI 238 (572)
T ss_pred HHHHHhCCCE
Confidence 7776656654
No 86
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.09 E-value=1.7 Score=44.58 Aligned_cols=244 Identities=11% Similarity=-0.020 Sum_probs=128.1
Q ss_pred CccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 5 GYWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 5 ~~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
-.+++..++|.+.+ +..-+.++.-+.-. .....+.+.+.- .=+++.+ -.|++++.+|-|.|.. |...++..|+
T Consensus 18 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~---~~~l~dal~~~~-~i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~ 92 (587)
T PRK06965 18 AADSIGAEILMKALAAEGVEFIWGYPGGA---VLYIYDELYKQD-KIQHVLV-RHEQAAVHAADGYARATGKVGVALVTS 92 (587)
T ss_pred chhccHHHHHHHHHHHcCCCEEEecCCcc---hHHHHHHHhhcC-CCeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 34466788998855 45555444333211 111123332211 1256666 6999999999999977 5555656588
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
.+.+..++--+. ++...+.| |++.++..... .-..+|..+..++++.+-.+ .....+++++...++.
T Consensus 93 GpG~~N~l~gl~-~A~~~~~P---------vl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~ 161 (587)
T PRK06965 93 GPGVTNAVTGIA-TAYMDSIP---------MVVISGQVPTAAIGQDAFQECDTVGITRPIVKH-NFLVKDVRDLAETVKK 161 (587)
T ss_pred CccHHHHHHHHH-HHhhcCCC---------EEEEecCCCccccCCCCcccccHHHHhcCCcce-eEEeCCHHHHHHHHHH
Confidence 888877766654 34333333 22222111111 12345555666788877554 3445677777777777
Q ss_pred hHh----C-CCcEEEecccccccccccC-CC----CCCc-ccCC-Cce------eEeee-CCcEEEEEechhHHHHHHHH
Q psy8699 161 CIK----D-KDPCIFFEPKVLYRAAVED-VP----EDYY-ELPL-DKA------DILVA-GTDVTLIGWGTQVHVLREVA 221 (325)
Q Consensus 161 a~~----~-~~Pv~i~~~~~l~~~~~~~-~~----~~~~-~~~~-gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~ 221 (325)
|++ . .+||||-.|..+....... .+ ...+ +... ... ..++. ..-++|++.|.....+.+++
T Consensus 162 A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l 241 (587)
T PRK06965 162 AFYIARTGRPGPVVVDIPKDVSKTPCEYEYPKSVEMRSYNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASREL 241 (587)
T ss_pred HHHHHhcCCCCeEEEEeChhhhhChhccccCccccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHH
Confidence 765 2 5899999887553322110 00 0000 0000 000 11222 34577777777666677777
Q ss_pred HHHHhhcCCcEE-EEecccc----cCC--------CHHHHHHHHhccCcEEEEecC
Q psy8699 222 GLAKEQLGVSCE-VIDLVSI----LPW--------DRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 222 ~~L~~~~gi~~~-vi~~~~l----~P~--------d~~~l~~~~~~~~~vivvEe~ 264 (325)
..|.+++|+-+- -..-+.+ .|+ -.....+.+++.+.||++...
T Consensus 242 ~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~ 297 (587)
T PRK06965 242 RQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGAR 297 (587)
T ss_pred HHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 777666566531 0111111 121 112234566777888887643
No 87
>PRK07586 hypothetical protein; Validated
Probab=95.07 E-value=1.9 Score=43.31 Aligned_cols=201 Identities=13% Similarity=0.030 Sum_probs=109.1
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCC
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGAL 127 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~t 127 (325)
+++.+ -.|++++.+|.|-|.. |...++..|+.+.+..++--+.+ +-..+.| |++.+..-... .-..
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~-A~~~~~P---------vl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN-ARRARTP---------IVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH-HHhcCCC---------EEEEecCCchhccCCCc
Confidence 56665 5999999999999977 54445555788887666655542 3322222 22222111111 1233
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEecccccccccccC--CCCC-CcccCCCce---
Q psy8699 128 YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----D-KDPCIFFEPKVLYRAAVED--VPED-YYELPLDKA--- 196 (325)
Q Consensus 128 h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~-~~Pv~i~~~~~l~~~~~~~--~~~~-~~~~~~gk~--- 196 (325)
+|..+...+++.+--+ .+...++.++...++.|++ . .+||+|-.|..+.....+. .+.. .........
T Consensus 110 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (514)
T PRK07586 110 PLTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE 188 (514)
T ss_pred ccccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence 5555566777776433 4456777887777777776 2 6899999987654332110 0000 000000000
Q ss_pred ---eEeee-CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEec-------ccccC-----CCHHHHHHHHhccCcEEE
Q psy8699 197 ---DILVA-GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDL-------VSILP-----WDRETVFQSARKTGRVII 260 (325)
Q Consensus 197 ---~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~-------~~l~P-----~d~~~l~~~~~~~~~viv 260 (325)
..+.. ..-++|++.|.....+.+++..|.++.|+-+-.-.. ..+-| .-.....+.+++.+.||+
T Consensus 189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~ 268 (514)
T PRK07586 189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL 268 (514)
T ss_pred HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence 11222 356788888876666777777776654665421011 11111 112334456777787777
Q ss_pred Eec
Q psy8699 261 AHE 263 (325)
Q Consensus 261 vEe 263 (325)
+--
T Consensus 269 vG~ 271 (514)
T PRK07586 269 VGA 271 (514)
T ss_pred ECC
Confidence 753
No 88
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.97 E-value=1.7 Score=44.16 Aligned_cols=154 Identities=11% Similarity=-0.057 Sum_probs=91.8
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeE-EEEecccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVSGATA-IAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~G~~p-~~~it~~~ 84 (325)
++..+++.+.+ +.+=+.++.-+.-. .....+.|.+ . ++ |++.+ ..|++++.+|.|.|...-+| ++..|+.+
T Consensus 13 ~~~~~~l~~~L~~~GV~~vFgvpG~~---~~~l~dal~~-~-~~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~Gp 86 (564)
T PRK08155 13 FTGAELIVRLLERQGIRIVTGIPGGA---ILPLYDALSQ-S-TQIRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGP 86 (564)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcc---cHHHHHHHhc-c-CCceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 46688999855 55566666544321 1111233322 1 22 56664 69999999999999885455 44447888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
.+..++.-|. ++...+.|. +++.+...... ..+.+|..+..++++.+--...- ..++.++...++.|++
T Consensus 87 G~~N~l~gl~-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~ 156 (564)
T PRK08155 87 GATNLVTAIA-DARLDSIPL--------VCITGQVPASMIGTDAFQEVDTYGISIPITKHNYL-VRDIEELPQVISDAFR 156 (564)
T ss_pred cHHHHHHHHH-HHHhcCCCE--------EEEeccCCcccccCCCccccchhhhhhccceEEEE-cCCHHHHHHHHHHHHH
Confidence 8766766665 344333332 22221111111 12346666666788876554333 3578888888888876
Q ss_pred ----C-CCcEEEecccccc
Q psy8699 164 ----D-KDPCIFFEPKVLY 177 (325)
Q Consensus 164 ----~-~~Pv~i~~~~~l~ 177 (325)
. ++||+|-.|..+.
T Consensus 157 ~a~~~~~GPV~i~iP~Dv~ 175 (564)
T PRK08155 157 IAQSGRPGPVWIDIPKDVQ 175 (564)
T ss_pred HHhcCCCCcEEEEcCHhHH
Confidence 2 5899999887553
No 89
>PRK05858 hypothetical protein; Provisional
Probab=94.90 E-value=2 Score=43.59 Aligned_cols=240 Identities=11% Similarity=0.016 Sum_probs=127.9
Q ss_pred cchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCe-EEEEecccc
Q psy8699 7 WTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGAT-AIAEIQFAD 84 (325)
Q Consensus 7 ~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~-p~~~it~~~ 84 (325)
.++..++|.+.+ ..+-+.++.-+-.. .....+.+. +. .=+++.+ -.|++++.+|.|.|...-+ .++..|+.+
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~---~~~l~dal~-~~-~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~Gp 77 (542)
T PRK05858 4 TGHAGRLAARRLKAHGVDTMFTLSGGH---LFPLYDGAR-EE-GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGP 77 (542)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCcc---hHHHHHHHH-hc-CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 456778888844 45556555433211 111123332 22 2367766 5999999999999988444 454547788
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
.+..++--|. ++...+.| |++.+...... ..+.+|..+..++++.+-.. .....++.++...++.|+
T Consensus 78 G~~n~~~~i~-~A~~~~~P---------vl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~ 146 (542)
T PRK05858 78 GVTNGMSAMA-AAQFNQSP---------LVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQAL 146 (542)
T ss_pred hHHHHHHHHH-HHHhcCCC---------EEEEeCCCCcccCCCCCCcccchhhhhhhhhce-EEEeCCHHHHHHHHHHHH
Confidence 7766665554 34333332 22222111121 12446666666788887554 455577888888888777
Q ss_pred h-----CCCcEEEecccccccccccC--CCCCCc--c-cC-CCce------eEeee-CCcEEEEEechhHHHHHHHHHHH
Q psy8699 163 K-----DKDPCIFFEPKVLYRAAVED--VPEDYY--E-LP-LDKA------DILVA-GTDVTLIGWGTQVHVLREVAGLA 224 (325)
Q Consensus 163 ~-----~~~Pv~i~~~~~l~~~~~~~--~~~~~~--~-~~-~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L 224 (325)
+ -++||+|-.|..+.....+. .+.... . -+ .... ..+.. ..-+++++.|.....+.+++..|
T Consensus 147 ~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~l 226 (542)
T PRK05858 147 QAAVTPHRGPVFVDFPMDHAFSMADDDGRPGALTELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRL 226 (542)
T ss_pred HHHcCCCCCeEEEEcChhhhhccccccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHH
Confidence 6 26899999887654332111 000000 0 00 0000 11222 34566666666555667777777
Q ss_pred HhhcCCcEE--EEe---cccccCCCH-HHHHHHHhccCcEEEEec
Q psy8699 225 KEQLGVSCE--VID---LVSILPWDR-ETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 225 ~~~~gi~~~--vi~---~~~l~P~d~-~~l~~~~~~~~~vivvEe 263 (325)
.+++|+-+- ... ++.-.|+-. ....+.+++.+.||++.-
T Consensus 227 ae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~ 271 (542)
T PRK05858 227 AEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVVGV 271 (542)
T ss_pred HHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECC
Confidence 665565432 111 111122211 123456777888888764
No 90
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.81 E-value=2.1 Score=43.76 Aligned_cols=237 Identities=12% Similarity=0.040 Sum_probs=126.5
Q ss_pred chHHHHHHHHHh-cCCCEEE-EcCcCCCCcccccchhHHHHhCC---CceeechhhHHHHHHHHHHHhcc-CCeEEEEec
Q psy8699 8 TGFFQSSPSQLL-SSQGGVL-FGEDVGFGGVFRCSLGLQEKYGK---HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQ 81 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~-~~~D~~~~g~~~~~~~~~~~~~p---~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it 81 (325)
++..+++.+.++ .+-+.++ +-++. ...|.+.+.. =+++.+ -.|++++.+|.|.|.. |...++..|
T Consensus 4 ~~~a~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~d~l~~~~~i~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t 74 (574)
T PRK07979 4 LSGAEMVVRSLIDQGVKQVFGYPGGA--------VLDIYDALHTVGGIDHVLV-RHEQAAVHMADGLARATGEVGVVLVT 74 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEEccCcc--------hHHHHHHHHhcCCceEEEe-CcHHHHHHHHHHHHHHhCCceEEEEC
Confidence 456788888554 4444444 32221 2333333311 156665 5999999999999976 766676668
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
+.+.+..++--+. ++-..+.|. +++.+...... ..+.+|..+..++++.+-.+ .....+++++...++.
T Consensus 75 ~GPG~~n~l~gi~-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~ 144 (574)
T PRK07979 75 SGPGATNAITGIA-TAYMDSIPL--------VVLSGQVATSLIGYDAFQECDMVGISRPVVKH-SFLVKQTEDIPQVLKK 144 (574)
T ss_pred CCccHhhhHHHHH-HHhhcCCCE--------EEEECCCChhccCCCCCceecHHHHhhcccce-EEEeCCHHHHHHHHHH
Confidence 8998866665554 333223322 22221111111 12346666667788877553 4445688888888888
Q ss_pred hHh-----CCCcEEEecccccccccccC---CCCC-Cc-c-cCC--Cce-------eEeee-CCcEEEEEechhHHHHHH
Q psy8699 161 CIK-----DKDPCIFFEPKVLYRAAVED---VPED-YY-E-LPL--DKA-------DILVA-GTDVTLIGWGTQVHVLRE 219 (325)
Q Consensus 161 a~~-----~~~Pv~i~~~~~l~~~~~~~---~~~~-~~-~-~~~--gk~-------~~~~~-g~dv~ii~~G~~~~~a~~ 219 (325)
|++ .++|+||..|..+.....+. .+.. .. . .+. ... ..++. ..-+++++.|.....+.+
T Consensus 145 A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~ 224 (574)
T PRK07979 145 AFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQ 224 (574)
T ss_pred HHHHHccCCCCcEEEEcChhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHH
Confidence 886 26999999887653221110 0100 00 0 000 000 11222 345777777765555666
Q ss_pred HHHHHHhhcCCcEE-EEeccccc----CC--------CHHHHHHHHhccCcEEEEec
Q psy8699 220 VAGLAKEQLGVSCE-VIDLVSIL----PW--------DRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 220 A~~~L~~~~gi~~~-vi~~~~l~----P~--------d~~~l~~~~~~~~~vivvEe 263 (325)
++..|.+++|+-+- -..-+.+- |+ -.....+.+++.+.|+++--
T Consensus 225 ~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~ 281 (574)
T PRK07979 225 QLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGV 281 (574)
T ss_pred HHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCC
Confidence 66667665565432 01111111 21 11233456777787777764
No 91
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.54 E-value=1.1 Score=45.37 Aligned_cols=151 Identities=9% Similarity=-0.045 Sum_probs=87.6
Q ss_pred hHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--CCceeechhhHHHHHHHHHHHhccCCeE-EEEecccc
Q psy8699 9 GFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KHRVFNTPLSEQGIVGFGIGLAVSGATA-IAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~r~~~~gIaE~~~v~~a~GlA~~G~~p-~~~it~~~ 84 (325)
+..+++.+.++ .+=+.++.-+... ...|.+... +=+++.+ -.|++++.+|.|.|...-+| +|..|.++
T Consensus 3 ~~a~~l~~~L~~~GV~~vFg~pG~~-------~~~l~dal~~~~i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GP 74 (549)
T PRK06457 3 SVAEVIIRVLEDNGIQRIYGIPGDS-------IDPLVDAIRKSKVKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGP 74 (549)
T ss_pred cHHHHHHHHHHHcCCCEEEEcCCcc-------hHHHHHHHHhcCCeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCC
Confidence 45677777444 4555555444221 233333320 1244444 69999999999999884444 44447788
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
.+..++--+- ++-..+.| |++.+..-... ..+++|..+..++++.+--. .+...++.++...++.|+
T Consensus 75 G~~N~l~~l~-~A~~~~~P---------vl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~ 143 (549)
T PRK06457 75 GSIHLLNGLY-DAKMDHAP---------VIALTGQVESDMIGHDYFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAI 143 (549)
T ss_pred chhhhHHHHH-HHHhcCCC---------EEEEecCCCccccCCCcccccchhhhhccceeE-EEEeCCHHHHHHHHHHHH
Confidence 8766665554 34322222 22222111111 12345556667888877543 455577777777777777
Q ss_pred h----CCCcEEEeccccccc
Q psy8699 163 K----DKDPCIFFEPKVLYR 178 (325)
Q Consensus 163 ~----~~~Pv~i~~~~~l~~ 178 (325)
+ .++||+|-.|..+..
T Consensus 144 ~~a~~~~GPV~l~iP~Dv~~ 163 (549)
T PRK06457 144 REAISKRGVAHINLPVDILR 163 (549)
T ss_pred HHHhcCCCCEEEEeCHhHhh
Confidence 6 379999999976643
No 92
>PRK07524 hypothetical protein; Provisional
Probab=94.53 E-value=1.1 Score=45.22 Aligned_cols=151 Identities=15% Similarity=0.008 Sum_probs=88.7
Q ss_pred hHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGK--HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p--~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+..+++.+.++ .+=+.++.-+ |+. ...|.+.... =+++.+ -.|++++.+|.|.|.. |...++..|.++
T Consensus 3 ~~a~~l~~~L~~~Gv~~vFg~p----G~~---~~~~~dal~~~~i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~Gp 74 (535)
T PRK07524 3 TCGEALVRLLEAYGVETVFGIP----GVH---TVELYRGLAGSGIRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGP 74 (535)
T ss_pred cHHHHHHHHHHHcCCCEEEeCC----Ccc---hHHHHHHHhhcCCcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCc
Confidence 44677777554 4445444332 111 2333333301 256665 5999999999999977 544466658899
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCC--CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGH--GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~--g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
.+..++--|. ++-..+.|. +++.+.... .+. +..|+..+..++++.+-- ..+...++.++...++.
T Consensus 75 G~~n~~~gi~-~A~~~~~Pv--------l~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~ 144 (535)
T PRK07524 75 GMTNIATAMG-QAYADSIPM--------LVISSVNRRASLGKGRGKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLAR 144 (535)
T ss_pred cHHHHHHHHH-HHHhcCCCE--------EEEeCCCChhhcCCCCccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHH
Confidence 8877766664 344333332 222211111 111 233444466788888744 35666788888888888
Q ss_pred hHh-----CCCcEEEecccccc
Q psy8699 161 CIK-----DKDPCIFFEPKVLY 177 (325)
Q Consensus 161 a~~-----~~~Pv~i~~~~~l~ 177 (325)
|++ .++||+|-.|+.+.
T Consensus 145 A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 145 AFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred HHHHHhcCCCCcEEEEeCHhHH
Confidence 886 26899999987654
No 93
>PRK08266 hypothetical protein; Provisional
Probab=94.46 E-value=4.2 Score=41.15 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=90.4
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADY 85 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F 85 (325)
++..+++.+.+ ...=+.++..+... .....+.+.+.-+.=|++.+ ..|++++.+|-|.|.. |...++..|+++.
T Consensus 4 ~~~~~~l~~~L~~~Gv~~vFg~pG~~---~~~l~~al~~~~~~i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG 79 (542)
T PRK08266 4 MTGGEAIVAGLVAHGVDTVFGLPGAQ---LYWLFDALYKAGDRIRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPG 79 (542)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcc---hHHHHHHHHhcCCCCeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCc
Confidence 46678888855 45555555443221 11113334332111256666 6999999999999977 5444555478898
Q ss_pred HHHHHHHHHHHHhhcccccCCceeccceEEeccCccC--CCC--CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 86 IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--GHG--ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 86 ~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g~g--~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
+..++--+. ++...+.|. +++.+..... +.+ ..|...+..++++.+-.+ .....+++++...++.|
T Consensus 80 ~~N~~~gi~-~A~~~~~Pv--------l~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A 149 (542)
T PRK08266 80 VLNAGAALL-TAYGCNSPV--------LCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKW-AERIEHPSEAPALVAEA 149 (542)
T ss_pred HHHHHHHHH-HHHhhCCCE--------EEEecCCChhhccCCCCcceecccHhhHHhhhcce-EEEeCCHHHHHHHHHHH
Confidence 877766664 344333332 2222111111 112 223334566788877554 44556778877778777
Q ss_pred Hh-----CCCcEEEeccccccc
Q psy8699 162 IK-----DKDPCIFFEPKVLYR 178 (325)
Q Consensus 162 ~~-----~~~Pv~i~~~~~l~~ 178 (325)
++ -.+||++-.|..+..
T Consensus 150 ~~~a~~~~~GPV~l~iP~dv~~ 171 (542)
T PRK08266 150 FQQMLSGRPRPVALEMPWDVFG 171 (542)
T ss_pred HHHHhhCCCCcEEEEeCHhHhh
Confidence 76 268999998876543
No 94
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.13 E-value=3.3 Score=42.25 Aligned_cols=155 Identities=10% Similarity=-0.034 Sum_probs=89.7
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADY 85 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F 85 (325)
++..++|.+.+ +.+-+.++.-+.-. .....+.+.+.- .=+++.+ -.|++++.+|.|.|.. |...++..|+.+.
T Consensus 4 ~~~~~~l~~~L~~~Gv~~vFgvpG~~---~~~l~~al~~~~-~i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG 78 (572)
T PRK08979 4 LSGASMIVRSLIDEGVKHIFGYPGGS---VLDIYDALHEKS-GIEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPG 78 (572)
T ss_pred ccHHHHHHHHHHHcCCCEEEEcCCcc---hHHHHHHHhhcC-CCeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCch
Confidence 46688888855 44455444333211 101133332211 1256666 6999999999999976 6555655578888
Q ss_pred HHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-
Q psy8699 86 IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK- 163 (325)
Q Consensus 86 ~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~- 163 (325)
+..++--+.+ +-..+.|. +++.+...... ..+.+|..+..++++.+-.+ .....+++++...++.|++
T Consensus 79 ~~n~l~gia~-A~~~~~Pv--------l~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~ 148 (572)
T PRK08979 79 ATNTITGIAT-AYMDSIPM--------VVLSGQVPSNLIGNDAFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYI 148 (572)
T ss_pred HhHHHHHHHH-HhhcCCCE--------EEEecCCCccccCCCCCcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHH
Confidence 7666655542 33222222 22221111111 12346666667788877554 3344578888888888886
Q ss_pred ----CCCcEEEecccccc
Q psy8699 164 ----DKDPCIFFEPKVLY 177 (325)
Q Consensus 164 ----~~~Pv~i~~~~~l~ 177 (325)
..+||||-.|..+.
T Consensus 149 A~~~~~GPV~l~iP~Dv~ 166 (572)
T PRK08979 149 ASTGRPGPVVIDLPKDCL 166 (572)
T ss_pred HhCCCCCcEEEecCHhHh
Confidence 25899999887553
No 95
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.96 E-value=4.9 Score=41.44 Aligned_cols=245 Identities=9% Similarity=-0.036 Sum_probs=127.0
Q ss_pred ccchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHH-h-CCCceeechhhHHHHHHHHHHHhcc-CCeEEEEec
Q psy8699 6 YWTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEK-Y-GKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQ 81 (325)
Q Consensus 6 ~~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~-~-~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it 81 (325)
.+++..++|.+.++ .+=+.++.-+.-. .....+.+.+. - +.=+|+.+ -.|++++.+|.|-|.. |...++..|
T Consensus 17 ~~~~~~~~l~~~L~~~GV~~vFgipG~~---~~~l~dal~~~~~~~~i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t 92 (616)
T PRK07418 17 QRATGAYALMDSLKRHGVKHIFGYPGGA---ILPIYDELYKAEAEGWLKHILV-RHEQGAAHAADGYARATGKVGVCFGT 92 (616)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCcCcc---hHHHHHHHHhcccCCCceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 34677899998554 4445444332111 11113344321 1 01257777 6999999999999977 544455547
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
.++.+..++.-|- ++...+.|. +++.+...... ....+|..+...+++.+-.. .....+++++...++.
T Consensus 93 ~GPG~~n~l~gl~-~A~~d~~Pv--------l~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~ 162 (616)
T PRK07418 93 SGPGATNLVTGIA-TAQMDSVPM--------VVITGQVPRPAIGTDAFQETDIFGITLPIVKH-SYVVRDPSDMARIVAE 162 (616)
T ss_pred CCccHHHHHHHHH-HHHhcCCCE--------EEEecCCCccccCCCCcccccHHHHhhhccee-EEEeCCHHHHHHHHHH
Confidence 7888766665554 444333332 22221111111 12335555556777766433 3346788888888888
Q ss_pred hHh----C-CCcEEEeccccccccccc--CCCCCCc--cc----CCCce-------eEeee-CCcEEEEEechhHHHHHH
Q psy8699 161 CIK----D-KDPCIFFEPKVLYRAAVE--DVPEDYY--EL----PLDKA-------DILVA-GTDVTLIGWGTQVHVLRE 219 (325)
Q Consensus 161 a~~----~-~~Pv~i~~~~~l~~~~~~--~~~~~~~--~~----~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~ 219 (325)
|++ . .+|++|-.|..+.....+ ..+.... .. +.... ..++. ..-+++++.|.....+.+
T Consensus 163 A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~ 242 (616)
T PRK07418 163 AFHIASSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHA 242 (616)
T ss_pred HHHHHhcCCCCcEEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHH
Confidence 776 2 499999998755432211 0000000 00 00000 12222 345777777775455666
Q ss_pred HHHHHHhhcCCcEE-EEecccccCCC------------HHHHHHHHhccCcEEEEecC
Q psy8699 220 VAGLAKEQLGVSCE-VIDLVSILPWD------------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 220 A~~~L~~~~gi~~~-vi~~~~l~P~d------------~~~l~~~~~~~~~vivvEe~ 264 (325)
++..|.+++|+-+- =..-..+-|-+ .....+.+++.+.||++-..
T Consensus 243 ~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~ 300 (616)
T PRK07418 243 ELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGAR 300 (616)
T ss_pred HHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCC
Confidence 66666665455431 00111112211 12234566778888887653
No 96
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.96 E-value=0.59 Score=39.64 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=65.1
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-C-CCCC
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-G-HGAL 127 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g-~g~t 127 (325)
+++.+ -.|++++.+|-|.|.. |...++..+.++.+..++--+.+ +...+.| |++.+..... . ..++
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~-A~~~~~P---------vl~i~g~~~~~~~~~~~ 105 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE-AYYSGVP---------LLVLTADRPPELRGTGA 105 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH-HHhcCCC---------EEEEECCCCHHhcCCCC
Confidence 45555 5999999999999987 54445554778887666655543 3322222 2222211111 1 2345
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHH------HHHHHHHhHh----C-CCcEEEecc
Q psy8699 128 YHSQSPEAYFAHTPGIKVVIPRGPYK------AKGLLLSCIK----D-KDPCIFFEP 173 (325)
Q Consensus 128 h~~~~d~~~~~~ip~~~v~~P~~~~e------~~~~~~~a~~----~-~~Pv~i~~~ 173 (325)
+|..++.++++.+-.+ .....++++ +..+++.|++ . .+|+++-.|
T Consensus 106 ~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 106 NQTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred CcccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7777777788776443 233344444 5555666655 2 689999443
No 97
>PRK08611 pyruvate oxidase; Provisional
Probab=93.94 E-value=2 Score=43.86 Aligned_cols=157 Identities=10% Similarity=-0.075 Sum_probs=91.4
Q ss_pred cchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 7 WTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 7 ~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+.+..+++.+.++ .+=+.++.-+.-. .....+.+.+.-..=+++. ...|++++.+|.|.|.. |...++..|+++
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~---~~~l~dal~~~~~~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GP 78 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDS---IDAVVDALRKEQDKIKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGP 78 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcc---hHHHHHHHHhcCCCCeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCC
Confidence 3567888888554 4444444333211 1112334432110125665 46999999999999966 544455557888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccC-ccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
.+..++--+. ++-..+.| +++.+.. .... .-+.+|..+..++++.+--+ .+...+++++...+..|+
T Consensus 79 G~~N~l~gla-~A~~~~~P---------vl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~ 147 (576)
T PRK08611 79 GAIHLLNGLY-DAKMDHVP---------VLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAI 147 (576)
T ss_pred cHHHHHHHHH-HHhhcCCC---------EEEEecCCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHHHHHH
Confidence 8866766664 34323332 2222211 1111 12346666667888887544 345567778877777776
Q ss_pred h----CCCcEEEeccccccc
Q psy8699 163 K----DKDPCIFFEPKVLYR 178 (325)
Q Consensus 163 ~----~~~Pv~i~~~~~l~~ 178 (325)
+ .++||+|-.|..+..
T Consensus 148 ~~A~~~~GPV~l~iP~Dv~~ 167 (576)
T PRK08611 148 RTAYEKKGVAVLTIPDDLPA 167 (576)
T ss_pred HHHhhCCCCEEEEeChhhhh
Confidence 5 479999999876544
No 98
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.71 E-value=4.9 Score=41.17 Aligned_cols=208 Identities=12% Similarity=0.022 Sum_probs=112.4
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccC--CeEEEEeccc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVSG--ATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~G--~~p~~~it~~ 83 (325)
++..+++.+.++ .+=+.++.-+-.. .....+.+.+ . ++ |++.+ ..|++++.+|-|.|... ...++..|++
T Consensus 4 ~~~~~~l~~~L~~~Gv~~vFg~pG~~---~~~l~dal~~-~-~~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~G 77 (591)
T PRK11269 4 MRAVDAAVLVLEKEGVTTAFGVPGAA---INPFYSAMRK-H-GGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSG 77 (591)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcc---cHHHHHHHhh-c-CCCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 567888888554 4455555433211 1112344432 2 22 67776 69999999999999764 4444444788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
+.+..++--+. ++-..+.| |++.+..-... .-+.+|..+..++++.+--+ .....++.++...++.|
T Consensus 78 PG~~N~l~gl~-~A~~~~~P---------vl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A 146 (591)
T PRK11269 78 PAGTDMITGLY-SASADSIP---------ILCITGQAPRARLHKEDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQA 146 (591)
T ss_pred CcHHHHHHHHH-HHhhcCCC---------EEEEecCCCccccCCCcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHH
Confidence 88766655554 33323332 22222111111 12346666677888876444 33457788888888888
Q ss_pred HhC-----CCcEEEeccccccccccc-CCCC-CCc-cc-CC-Cce------eEeee-CCcEEEEEechhHHHHHHHHHHH
Q psy8699 162 IKD-----KDPCIFFEPKVLYRAAVE-DVPE-DYY-EL-PL-DKA------DILVA-GTDVTLIGWGTQVHVLREVAGLA 224 (325)
Q Consensus 162 ~~~-----~~Pv~i~~~~~l~~~~~~-~~~~-~~~-~~-~~-gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L 224 (325)
++. ++||+|-.|..+.....+ ..+. ... .. +. ... ..+.. ..-++|++.|.....+.+++..|
T Consensus 147 ~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~l 226 (591)
T PRK11269 147 FHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEF 226 (591)
T ss_pred HHHHhhCCCCeEEEEeChhhhhcccccccccccccccCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHH
Confidence 862 589999988765332211 0000 000 00 00 000 11222 34566777776555566666666
Q ss_pred HhhcCCcE
Q psy8699 225 KEQLGVSC 232 (325)
Q Consensus 225 ~~~~gi~~ 232 (325)
.+.+|+-+
T Consensus 227 ae~~g~PV 234 (591)
T PRK11269 227 AELTGVPV 234 (591)
T ss_pred HHHhCCCe
Confidence 66545543
No 99
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.38 E-value=2.5 Score=43.29 Aligned_cols=240 Identities=11% Similarity=-0.008 Sum_probs=125.8
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccC-CeE-EEEeccc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVSG-ATA-IAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~G-~~p-~~~it~~ 83 (325)
++..++|.+.++ .+=+.++.-+-.. .....+.+. +. ++ |++.+ -.|++++.+|-|-|... .+| ++..|++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFGvpG~~---~~~l~dal~-~~-~~i~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~G 76 (588)
T TIGR01504 3 MRAVDAAVYVLEKEGITTAFGVPGAA---INPFYSALK-AH-GGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSG 76 (588)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCC---cHHHHHHHh-hc-CCCcEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 455788888444 4444444322111 111123332 12 22 56655 58999999999999763 444 5555788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
+.+..++--+. ++-..+.|. ++.+..-... ..+.+|..+..++++.+--+ .+...++.++...++.|
T Consensus 77 pG~~N~~~gla-~A~~~~~Pv---------l~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A 145 (588)
T TIGR01504 77 PAGTDMITGLY-SASADSIPI---------LCITGQAPRARLHKEDFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQA 145 (588)
T ss_pred ccHHHHHHHHH-HHhhcCCCE---------EEEecCCCccccCCCcccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHH
Confidence 88766665554 333233322 2222111111 22346666667888887544 33446788888888888
Q ss_pred Hh---C--CCcEEEecccccccccccC-CCC-CCccc--CC-Cce------eEee-eCCcEEEEEechhHHHHHHHHHHH
Q psy8699 162 IK---D--KDPCIFFEPKVLYRAAVED-VPE-DYYEL--PL-DKA------DILV-AGTDVTLIGWGTQVHVLREVAGLA 224 (325)
Q Consensus 162 ~~---~--~~Pv~i~~~~~l~~~~~~~-~~~-~~~~~--~~-gk~------~~~~-~g~dv~ii~~G~~~~~a~~A~~~L 224 (325)
++ . ++||+|-.|+.+.....+. .+. ..... +. ... ..+. ...-++|++.|.....+.++...|
T Consensus 146 ~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~l 225 (588)
T TIGR01504 146 FHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEF 225 (588)
T ss_pred HHHHccCCCCeEEEEeCcchhhcccCCcccccccccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHH
Confidence 87 2 5799999987654322110 000 00000 00 000 1122 234577777777666677777777
Q ss_pred HhhcCCcEE-EEecccccCCC-------------HHHHHHHHhccCcEEEEecC
Q psy8699 225 KEQLGVSCE-VIDLVSILPWD-------------RETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 225 ~~~~gi~~~-vi~~~~l~P~d-------------~~~l~~~~~~~~~vivvEe~ 264 (325)
.++.|+-+- -..-+.+-|-+ .....+.+++.+.|+++-..
T Consensus 226 ae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~ 279 (588)
T TIGR01504 226 AELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNR 279 (588)
T ss_pred HHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCC
Confidence 665566431 11112222222 12234456677877777643
No 100
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.26 E-value=1.8 Score=44.41 Aligned_cols=156 Identities=9% Similarity=-0.062 Sum_probs=92.2
Q ss_pred CccchHHHHHHHHHh-cCCCEEEE-cCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEec
Q psy8699 5 GYWTGFFQSSPSQLL-SSQGGVLF-GEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQ 81 (325)
Q Consensus 5 ~~~~~~~~a~~~~~~-~~~~vv~~-~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it 81 (325)
+++++..+++.+.++ ..=+.++. -++-- ....+.+.+.- .=|++.+ -.|++++.+|-|.|.. |...++..|
T Consensus 8 ~~~~t~a~~l~~~L~~~GV~~vFGvpG~~~----~~l~dal~~~~-~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t 81 (595)
T PRK09107 8 PRQMTGAEMVVQALKDQGVEHIFGYPGGAV----LPIYDEIFQQD-DIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVT 81 (595)
T ss_pred hhhhhHHHHHHHHHHHCCCCEEEEccCcch----HHHHHHHhhcC-CCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEEC
Confidence 455677899998665 44444443 22211 11133342211 1267766 6999999999999965 655666658
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-C-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-G-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
+++.+..++--|. ++-..+.| |++.+..... . ....+|..+..++++.+--+ .+...++.++..+++
T Consensus 82 ~GPG~~N~l~gia-~A~~~~~P---------vl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~ 150 (595)
T PRK09107 82 SGPGATNAVTPLQ-DALMDSIP---------LVCITGQVPTHLIGSDAFQECDTVGITRPCTKH-NWLVKDVNDLARVIH 150 (595)
T ss_pred CCccHhHHHHHHH-HHhhcCCC---------EEEEEcCCChhhcCCCCCcccchhhhhhhheEE-EEEeCCHHHHHHHHH
Confidence 8998866665554 33322332 2222211111 1 12346666566777776443 334577888888888
Q ss_pred HhHhC-----CCcEEEecccccc
Q psy8699 160 SCIKD-----KDPCIFFEPKVLY 177 (325)
Q Consensus 160 ~a~~~-----~~Pv~i~~~~~l~ 177 (325)
.|++. ++||+|-.|..+.
T Consensus 151 ~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 151 EAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred HHHHHhcCCCCceEEEecCCChh
Confidence 88873 6899999887553
No 101
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.08 E-value=2 Score=43.66 Aligned_cols=205 Identities=18% Similarity=0.113 Sum_probs=116.5
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--CCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
++-.+++.+.++ .+=+.++.-+ |++ ...|.+... .=||+.+ --||+++.+|.|-|.. |..-+|..|.+
T Consensus 2 ~~ga~~lv~~L~~~GV~~VFGiP----G~~---i~~~~dal~~~~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsG 73 (550)
T COG0028 2 MTGAEALVEALEANGVDTVFGIP----GGS---ILPLYDALYDSGIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSG 73 (550)
T ss_pred CcHHHHHHHHHHHcCCcEEEeCC----Ccc---HHHHHHHHHhCCCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 345678887554 4444444322 222 334444331 1256666 5999999999999977 66557766888
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEec-cCccCCCC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAVGHG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~g~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
|....++.-|- ++-+...| +++.+ ......-| ..+|..+..++++.+-.. .+...+++|+-..++.|
T Consensus 74 PGatN~~tgla-~A~~d~~P---------ll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~A 142 (550)
T COG0028 74 PGATNLLTGLA-DAYMDSVP---------LLAITGQVPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARA 142 (550)
T ss_pred CcHHHHHHHHH-HHHhcCCC---------EEEEeCCccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHH
Confidence 88876665554 44422222 22222 11111112 457767667788877544 45568889999999998
Q ss_pred HhC-----CCcEEEecccccccccccCC-----CCCCc-ccC-----CCce-eEeee-CCcEEEEEechhHHHHHHHHHH
Q psy8699 162 IKD-----KDPCIFFEPKVLYRAAVEDV-----PEDYY-ELP-----LDKA-DILVA-GTDVTLIGWGTQVHVLREVAGL 223 (325)
Q Consensus 162 ~~~-----~~Pv~i~~~~~l~~~~~~~~-----~~~~~-~~~-----~gk~-~~~~~-g~dv~ii~~G~~~~~a~~A~~~ 223 (325)
++. .+|++|-.|+-+........ ....+ +.. +.++ ..+.+ ..-+++++.|.....|.+.+.+
T Consensus 143 f~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~ 222 (550)
T COG0028 143 FRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRE 222 (550)
T ss_pred HHHHhcCCCceEEEEcChhHhhcccccccccccccccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHH
Confidence 872 58999999986554431110 00000 100 1111 12223 2457777777777777777777
Q ss_pred HHhhcCCc
Q psy8699 224 AKEQLGVS 231 (325)
Q Consensus 224 L~~~~gi~ 231 (325)
|.++.++-
T Consensus 223 lae~~~~P 230 (550)
T COG0028 223 LAEKLGAP 230 (550)
T ss_pred HHHHHCCC
Confidence 76654543
No 102
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.87 E-value=1.1 Score=45.84 Aligned_cols=209 Identities=13% Similarity=0.082 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 6 YWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 6 ~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
++++..++|.+.+ +.+-+.++.- ... .. ....+. +- .=+++.+ ..|++++.+|.|.|.. |.-.++..|.+
T Consensus 12 ~~~~~a~~i~~~L~~~GV~~vFG~-~~~---~~-~~~~~~-~~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~G 83 (578)
T PRK06112 12 LNGTVAHAIARALKRHGVEQIFGQ-SLP---SA-LFLAAE-AI-GIRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNG 83 (578)
T ss_pred cCcCHHHHHHHHHHHCCCCEEeec-ccc---hH-hHHHHh-hc-CCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4457789999854 4555555521 111 10 011221 11 1256666 5999999999999977 54444444677
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
+.+..++--|. ++-..+.|. +++.+...... .-..+|..+...+++.+--+ .....+++++...++.|+
T Consensus 84 pG~~N~~~gl~-~A~~~~~Pv--------l~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~ 153 (578)
T PRK06112 84 PAATLLVAPLA-EALKASVPI--------VALVQDVNRDQTDRNAFQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAF 153 (578)
T ss_pred CcHHHHHHHHH-HHhhcCCCE--------EEEecCCccccCCCCCccccChhhhhccccce-EEEeCCHHHHHHHHHHHH
Confidence 88766666664 343333332 22221111111 22346666667788887543 345567777777777777
Q ss_pred h----C-CCcEEEecccccccccccC--CCC----CCccc--CCCce-------eEeee-CCcEEEEEechhHHHHHHHH
Q psy8699 163 K----D-KDPCIFFEPKVLYRAAVED--VPE----DYYEL--PLDKA-------DILVA-GTDVTLIGWGTQVHVLREVA 221 (325)
Q Consensus 163 ~----~-~~Pv~i~~~~~l~~~~~~~--~~~----~~~~~--~~gk~-------~~~~~-g~dv~ii~~G~~~~~a~~A~ 221 (325)
+ . .+|++|-.|..+....... .+. ..+.. ..... ..++. ..-++|++.|.....+.+++
T Consensus 154 ~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l 233 (578)
T PRK06112 154 TAATSGRPGPVVLLLPADLLTAAAAAPAAPRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAAL 233 (578)
T ss_pred HHHhhCCCCcEEEEcCHhHhhCccccccCcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHH
Confidence 5 2 5899999987654433211 100 00000 00000 11222 33466666676555666677
Q ss_pred HHHHhhcCCcE
Q psy8699 222 GLAKEQLGVSC 232 (325)
Q Consensus 222 ~~L~~~~gi~~ 232 (325)
..|.+++|+-+
T Consensus 234 ~~lae~lg~pV 244 (578)
T PRK06112 234 AALQSLAGLPV 244 (578)
T ss_pred HHHHHHhCCCE
Confidence 77766556554
No 103
>PRK07064 hypothetical protein; Provisional
Probab=92.78 E-value=4.2 Score=41.10 Aligned_cols=154 Identities=12% Similarity=0.000 Sum_probs=88.8
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.+..+++.+.+ +.+=+.++.-.... ....++.+.+ . ++ +++.+ ..|++++.+|.|.|.. |...++..|+++
T Consensus 3 ~~~~~~l~~~L~~~Gv~~vFgvpG~~---~~~l~~al~~-~-~~i~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~Gp 76 (544)
T PRK07064 3 VTVGELIAAFLEQCGVKTAFGVISIH---NMPILDAIGR-R-GKIRFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGT 76 (544)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCCc---chHHHHHHhc-c-CCccEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 46688888844 44455444322111 1111333322 2 22 55555 6999999999999976 544555447888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCCC--CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGHG--ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~g--~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
.+..++.-|. ++-..+.|. +++.+.... .+.+ ..|+..+...+++.+-.. .+...+++++..+++.
T Consensus 77 G~~N~~~~i~-~A~~~~~Pv--------l~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~ 146 (544)
T PRK07064 77 GAGNAAGALV-EALTAGTPL--------LHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIRE 146 (544)
T ss_pred cHHHHHHHHH-HHHhcCCCE--------EEEeCCCCcccccCCCcccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHH
Confidence 8866766665 343333332 222211111 1112 235555777888877554 4445677887777777
Q ss_pred hHh----C-CCcEEEecccccc
Q psy8699 161 CIK----D-KDPCIFFEPKVLY 177 (325)
Q Consensus 161 a~~----~-~~Pv~i~~~~~l~ 177 (325)
|++ . ++||+|-.|..+.
T Consensus 147 A~~~a~~~~~GPV~l~iP~dv~ 168 (544)
T PRK07064 147 AVRVALTAPTGPVSVEIPIDIQ 168 (544)
T ss_pred HHHHhccCCCCcEEEEeCHhHh
Confidence 775 2 7999999887553
No 104
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=92.45 E-value=3.3 Score=34.74 Aligned_cols=112 Identities=12% Similarity=0.061 Sum_probs=60.3
Q ss_pred CCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhc-ccccCCceeccceEEeccC-ccCCCC
Q psy8699 49 KHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKY-RYRSGNQFSCGNLTIRAPC-MAVGHG 125 (325)
Q Consensus 49 p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~-~~~~~~~~~~~~~v~~~~~-g~~g~g 125 (325)
|.+|+.+|- =-..++.|+|++++--+|++++ ..+.. +.....+. .+... ++|. .. +++-..+ +..+..
T Consensus 35 ~~~~~~~gs-mG~~lp~AiGa~~a~~~~Vv~i-~GDG~f~m~~~el~-t~~~~~~~~i---~~---vV~nN~~~g~~~~~ 105 (157)
T cd02001 35 DGHFYMLGS-MGLAGSIGLGLALGLSRKVIVV-DGDGSLLMNPGVLL-TAGEFTPLNL---IL---VVLDNRAYGSTGGQ 105 (157)
T ss_pred CCCEEeecc-hhhHHHHHHHHHhcCCCcEEEE-ECchHHHhcccHHH-HHHHhcCCCE---EE---EEEeCccccccCCc
Confidence 788887542 2233457788876644788885 67743 22222232 34433 1332 21 2212111 111111
Q ss_pred CCCCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 126 ALYHSQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 126 ~th~~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.++.+.-|. .+...+ |+.-+...++.|+...++++++.++|++|
T Consensus 106 ~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~vi 150 (157)
T cd02001 106 PTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGLLATTGPTLL 150 (157)
T ss_pred CCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHHHhCCCCEEE
Confidence 122222233 334443 55556668999999999999999999998
No 105
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=92.31 E-value=3.3 Score=35.38 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=63.6
Q ss_pred HhCCCceeechh-hHH-HHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccC-
Q psy8699 46 KYGKHRVFNTPL-SEQ-GIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC- 119 (325)
Q Consensus 46 ~~~p~r~~~~gI-aE~-~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~- 119 (325)
+. |.+++..+. .=. .+++.|.|++++. -++++++ ..+ |+.-. ..|. .+...++|.. . +++...+
T Consensus 39 ~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i-~GDG~f~~~~-~el~-t~~~~~lp~~---~---iv~NN~~~ 108 (178)
T cd02014 39 NG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIAL-SGDGGFAMLM-GDLI-TAVKYNLPVI---V---VVFNNSDL 108 (178)
T ss_pred CC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhhH-HHHH-HHHHhCCCcE---E---EEEECCch
Confidence 44 667776542 221 2555777777653 4566664 566 44333 3343 4665555432 1 2222211
Q ss_pred ccC-------C---CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 120 MAV-------G---HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 120 g~~-------g---~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+.. + .+...+..+..++.... |+..+...++.|++..++++++.++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~li 168 (178)
T cd02014 109 GFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVI 168 (178)
T ss_pred hHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 100 0 01111222333455555 77788889999999999999999999998
No 106
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.25 E-value=4.9 Score=40.95 Aligned_cols=151 Identities=13% Similarity=-0.027 Sum_probs=90.2
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC--C-CceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--K-HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++..++|.+.+ +.+-+.++.-+.-. ...|.+..- + =+++.+ -.|++++.+|-|.|.. |...++..|+
T Consensus 4 ~~~a~~l~~~L~~~GV~~vFg~pG~~-------~~~l~~al~~~~~i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~ 75 (574)
T PRK06882 4 LSGAEMVVQSLRDEGVEYVFGYPGGS-------VLDIYDAIHTLGGIEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTS 75 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcc-------hHHHHHHHhhcCCCeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECC
Confidence 45678888854 45555555433211 223333320 1 156666 6999999999999977 5444555478
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
.+.+..++--+. ++-..+.| |++.+...... .-+.+|..+..++++.+-.. .....+++++...++.
T Consensus 76 GpG~~N~l~~i~-~A~~~~~P---------vlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~ 144 (574)
T PRK06882 76 GPGATNAITGIA-TAYTDSVP---------LVILSGQVPSNLIGTDAFQECDMLGISRPVVKH-SFIVKNAEDIPSTIKK 144 (574)
T ss_pred CccHHHHHHHHH-HHhhcCCC---------EEEEecCCCccccCCCcccccchhhhhhcccce-EEEeCCHHHHHHHHHH
Confidence 888877766664 33323332 22222111111 12346666667788876443 4455778888777877
Q ss_pred hHh-----CCCcEEEecccccc
Q psy8699 161 CIK-----DKDPCIFFEPKVLY 177 (325)
Q Consensus 161 a~~-----~~~Pv~i~~~~~l~ 177 (325)
|++ ..+||+|-.|..+.
T Consensus 145 A~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06882 145 AFYIASTGRPGPVVIDIPKDMV 166 (574)
T ss_pred HHHHHhcCCCCCEEEecCHHHh
Confidence 776 25999999887643
No 107
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.20 E-value=9.8 Score=38.86 Aligned_cols=115 Identities=7% Similarity=-0.045 Sum_probs=69.4
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCC
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGAL 127 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~t 127 (325)
+++.+ -.|++++.+|-|.|.. |...++..|+.+.+..++--+.+ +-..+.| |++.+.... .. ....
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~-A~~~~~P---------vl~I~G~~~~~~~~~~~ 108 (575)
T TIGR02720 40 HYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD-AKEDHVP---------VLALVGQVPTTGMNMDT 108 (575)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH-HhhcCCC---------EEEEecCCccccCCCCC
Confidence 46655 5999999999999976 54445555788888767655543 3222222 222221111 11 2344
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecccccc
Q psy8699 128 YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEPKVLY 177 (325)
Q Consensus 128 h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~~~l~ 177 (325)
+|..+..++++.+-.+ .....+++++...++.|++ .++||||-.|..+.
T Consensus 109 ~q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 109 FQEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred cceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 6666667777776432 2344556666555555554 58999999887553
No 108
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.19 E-value=8.7 Score=39.20 Aligned_cols=210 Identities=11% Similarity=-0.009 Sum_probs=108.9
Q ss_pred chHHHHHHHHHhcC-CC-EEEEcCcCCCCcccccchhHHHHhCC----CceeechhhHHHHHHHHHHHhcc-CCeEEEEe
Q psy8699 8 TGFFQSSPSQLLSS-QG-GVLFGEDVGFGGVFRCSLGLQEKYGK----HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEI 80 (325)
Q Consensus 8 ~~~~~a~~~~~~~~-~~-vv~~~~D~~~~g~~~~~~~~~~~~~p----~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~i 80 (325)
.+..++|.+.+++. =+ ++.+-++.- ....+.+.+.-.. =+++.+ -.|++++.+|-|.|.. |...++..
T Consensus 7 ~~~a~~l~~~L~~~GV~~iFgvpG~~~----~~l~dal~~~~~~g~~~i~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~ 81 (569)
T PRK08327 7 YTAAELFLELLKELGVDYIFINSGTDY----PPIIEAKARARAAGRPLPEFVIC-PHEIVAISMAHGYALVTGKPQAVMV 81 (569)
T ss_pred ccHHHHHHHHHHHCCCCEEEEcCCCCc----HHHHHHHHhhhhcCCCCCcEEec-CCHHHHHHHHHHHHHhhCCCeEEEE
Confidence 46788999865533 34 333333311 1113444321100 167766 5899999999999988 44445554
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC---------CCCCC-hhHHHHHcCCCCcEEEeeCC
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG---------ALYHS-QSPEAYFAHTPGIKVVIPRG 150 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g---------~th~~-~~d~~~~~~ip~~~v~~P~~ 150 (325)
|.++.+..++.-|- ++-..+.|. +++.+.......+ ..+|. .+...+++.+-.. .+...+
T Consensus 82 t~GPG~~N~~~gla-~A~~d~~Pv--------l~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~ 151 (569)
T PRK08327 82 HVDVGTANALGGVH-NAARSRIPV--------LVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKW-DYEIRR 151 (569)
T ss_pred ecCHHHHHHHHHHH-HHhhcCCCE--------EEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhh-hcccCC
Confidence 78888877765554 333223322 2222111101111 11232 2445677766443 445677
Q ss_pred HHHHHHHHHHhHh-----CCCcEEEecccccccccccC--CCC-CCc---ccCCCce------eEeee-CCcEEEEEech
Q psy8699 151 PYKAKGLLLSCIK-----DKDPCIFFEPKVLYRAAVED--VPE-DYY---ELPLDKA------DILVA-GTDVTLIGWGT 212 (325)
Q Consensus 151 ~~e~~~~~~~a~~-----~~~Pv~i~~~~~l~~~~~~~--~~~-~~~---~~~~gk~------~~~~~-g~dv~ii~~G~ 212 (325)
+.++...++.|++ -++||+|-.|..+.....+. .+. ... ....... ..++. ..-+++++.|.
T Consensus 152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~ 231 (569)
T PRK08327 152 GDQIGEVVARAIQIAMSEPKGPVYLTLPREVLAEEVPEVKADAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAG 231 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHhhhccccccCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccc
Confidence 8888888888886 26899999886553322111 100 000 0000000 11223 23466677776
Q ss_pred hHHHHHHHHHHHHhhcCCcE
Q psy8699 213 QVHVLREVAGLAKEQLGVSC 232 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~ 232 (325)
....+.+++..|.++.|+-+
T Consensus 232 ~~~~a~~~l~~lae~l~~Pv 251 (569)
T PRK08327 232 RTAEGFASLRRLAEELAIPV 251 (569)
T ss_pred CCcccHHHHHHHHHHhCCCE
Confidence 65566666666655545543
No 109
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=92.13 E-value=4.4 Score=41.47 Aligned_cols=243 Identities=11% Similarity=-0.014 Sum_probs=123.3
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC-CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG-KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~-p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
++-.++|.+.+ +.+=+.++.-+.-. .....+.+.+... ++ +++.+ ..|++++.+|.|-|.. |...++..|++
T Consensus 10 ~~~~~~l~~~L~~~GV~~vFgipG~~---~~~l~d~l~~~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~G 85 (585)
T CHL00099 10 KTGAFALIDSLVRHGVKHIFGYPGGA---ILPIYDELYAWEKKGLIKHILV-RHEQGAAHAADGYARSTGKVGVCFATSG 85 (585)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcc---hHHHHHHHHhcCcCCCceEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 44578888854 45555555433211 1111333322110 11 45664 6999999999999977 65556555788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
+.+..++.-|. ++-..+.|. +++.+.......+ ..+|..+..++++.+-.. .....+++++..+++.|+
T Consensus 86 PG~~N~l~gl~-~A~~~~~Pv--------l~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~ 155 (585)
T CHL00099 86 PGATNLVTGIA-TAQMDSVPL--------LVITGQVGRAFIGTDAFQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAF 155 (585)
T ss_pred CcHHHHHHHHH-HHhhcCCCE--------EEEecCCCccccCCCCccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHH
Confidence 88766665554 343333322 2222111111111 235545555666665332 344567888888888887
Q ss_pred h-----CCCcEEEecccccccccccC-CCCC-C--cccC-------CCce------eEeee-CCcEEEEEechhHHHHHH
Q psy8699 163 K-----DKDPCIFFEPKVLYRAAVED-VPED-Y--YELP-------LDKA------DILVA-GTDVTLIGWGTQVHVLRE 219 (325)
Q Consensus 163 ~-----~~~Pv~i~~~~~l~~~~~~~-~~~~-~--~~~~-------~gk~------~~~~~-g~dv~ii~~G~~~~~a~~ 219 (325)
+ .++||+|-.|..+.....+. .+.. . ...+ .... ..++. ..-++|++.|.....+.+
T Consensus 156 ~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~ 235 (585)
T CHL00099 156 YIAKHGRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQ 235 (585)
T ss_pred HHHccCCCCeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHH
Confidence 6 25899999887553222110 0000 0 0000 0000 11223 334666677765556777
Q ss_pred HHHHHHhhcCCcEE-EEeccccc----CC--------CHHHHHHHHhccCcEEEEecC
Q psy8699 220 VAGLAKEQLGVSCE-VIDLVSIL----PW--------DRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 220 A~~~L~~~~gi~~~-vi~~~~l~----P~--------d~~~l~~~~~~~~~vivvEe~ 264 (325)
++..|.+++|+-+- -..-+.+- |+ -.......+++.+.|+++--.
T Consensus 236 ~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~ 293 (585)
T CHL00099 236 EITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGAR 293 (585)
T ss_pred HHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCC
Confidence 77777666565431 11111111 21 112234556777888887643
No 110
>PLN02470 acetolactate synthase
Probab=92.11 E-value=3.8 Score=41.97 Aligned_cols=152 Identities=11% Similarity=-0.064 Sum_probs=90.7
Q ss_pred ccchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--C-CceeechhhHHHHHHHHHHHhcc-CCeEEEEe
Q psy8699 6 YWTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--K-HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEI 80 (325)
Q Consensus 6 ~~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~i 80 (325)
.+.+..++|.+.++ .+=+.++.-+.-. ...|.+.+. + =|++.+ -.|++++.+|-|.|.. |...++..
T Consensus 11 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~-------~~~l~dal~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~ 82 (585)
T PLN02470 11 EPRKGADILVEALEREGVDTVFAYPGGA-------SMEIHQALTRSNCIRNVLC-RHEQGEVFAAEGYAKASGKVGVCIA 82 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcc-------cHHHHHHHhccCCceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44566889998554 4444444333211 223333220 1 256666 6999999999999976 65556655
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLL 158 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~ 158 (325)
|+++.+..++--|.+ +-..+.| |++.+...... .-..+|..+..++++.+-.+ -+...+++++..++
T Consensus 83 t~GPG~~N~l~gia~-A~~~~~P---------vl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l 151 (585)
T PLN02470 83 TSGPGATNLVTGLAD-ALLDSVP---------LVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRVI 151 (585)
T ss_pred CCCccHHHHHHHHHH-HHhcCCc---------EEEEecCCChhhcCCCcCcccchhhhhhhheEE-EEEcCCHHHHHHHH
Confidence 889988777666643 3322222 22222111111 11335656666777776443 23346888888888
Q ss_pred HHhHhC-----CCcEEEeccccc
Q psy8699 159 LSCIKD-----KDPCIFFEPKVL 176 (325)
Q Consensus 159 ~~a~~~-----~~Pv~i~~~~~l 176 (325)
+.|++. ++||+|-.|..+
T Consensus 152 ~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 152 REAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred HHHHHHhcCCCCCeEEEEecCch
Confidence 888873 699999988654
No 111
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.38 E-value=6.6 Score=40.03 Aligned_cols=153 Identities=8% Similarity=0.005 Sum_probs=86.0
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeEEEE-ecccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVSGATAIAE-IQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~G~~p~~~-it~~~ 84 (325)
.+..++|.+.+ +.+-+.++.-+--. .....+.+.+ . ++ |++.+ -.|++++.+|-|.|...-+|-++ .|.++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFg~pG~~---~~~l~dal~~-~-~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~Gp 76 (574)
T PRK09124 3 QTVADYIAKTLEQAGVKRIWGVTGDS---LNGLSDSLRR-M-GTIEWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGP 76 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCc---hHHHHHHHhc-c-CCCcEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCC
Confidence 46778888844 45555555433211 1111333422 2 22 45555 49999999999999884455443 35677
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
....++.-+. ++...+.| +++.+...... ..+.+|..++.++++.+--. .....+++++...++.|+
T Consensus 77 G~~n~~~gi~-~A~~~~~P---------vl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~ 145 (574)
T PRK09124 77 GNLHLINGLF-DCHRNHVP---------VLAIAAHIPSSEIGSGYFQETHPQELFRECSHY-CELVSNPEQLPRVLAIAM 145 (574)
T ss_pred CHHHHHHHHH-HHhhcCCC---------EEEEecCCccccCCCCCccccChhhhcccceee-eEEeCCHHHHHHHHHHHH
Confidence 7666655554 33322222 22222111111 12347777777888866443 333567777666666555
Q ss_pred h----CCCcEEEecccccc
Q psy8699 163 K----DKDPCIFFEPKVLY 177 (325)
Q Consensus 163 ~----~~~Pv~i~~~~~l~ 177 (325)
+ .++||++-.|..+.
T Consensus 146 ~~A~~~~gPV~l~iP~Dv~ 164 (574)
T PRK09124 146 RKAILNRGVAVVVLPGDVA 164 (574)
T ss_pred HHHhcCCCCEEEEeChhhh
Confidence 4 47899999886553
No 112
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=91.05 E-value=2.2 Score=37.08 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=63.7
Q ss_pred CCceeechh-hH-HHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-SE-QGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-aE-~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- .= -..+..|+|++++ .-++++++ ..+.. +.....|. .+...++|.. +++..-.+..
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i-~GDG~f~m~~~eL~-Ta~~~~lpvi-------~vV~NN~~yg~~ 113 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAI-AGDGAWGMSMMEIM-TAVRHKLPVT-------AVVFRNRQWGAE 113 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccHHHHH-HHHHhCCCeE-------EEEEECchhHHH
Confidence 678886421 11 2356688887765 45777774 67743 33444454 3665555542 1121111110
Q ss_pred C------CC-----CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEe
Q psy8699 123 G------HG-----ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK---DKDPCIFF 171 (325)
Q Consensus 123 g------~g-----~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~---~~~Pv~i~ 171 (325)
. .+ ..++..+..++.+++ |+.-..-.++.|+..+++++++ .++|++|-
T Consensus 114 ~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 114 KKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 00 111222223344444 6677788899999999999998 79999993
No 113
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=90.29 E-value=1.6 Score=38.30 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=48.5
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhhc-CCcEEEEeccccc--------C--CCHHHHHHHHhccCcEEEEecCCcCCC
Q psy8699 202 GTDVTLIGWGT-QVHVLREVAGLAKEQL-GVSCEVIDLVSIL--------P--WDRETVFQSARKTGRVIIAHEAPLTSG 269 (325)
Q Consensus 202 g~dv~ii~~G~-~~~~a~~A~~~L~~~~-gi~~~vi~~~~l~--------P--~d~~~l~~~~~~~~~vivvEe~~~~gg 269 (325)
..|+++.|.|. .+.+++.|+++|++.. +++++|||+.-|. | ++.+.+.++.-..+.||+- +-|
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHG 108 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHG 108 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESS
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCC
Confidence 47999999997 4578999999998853 7888888877652 2 5556787777777777654 235
Q ss_pred hHHHHHHHHHh
Q psy8699 270 FGAELAASIQD 280 (325)
Q Consensus 270 lg~~v~~~l~e 280 (325)
..+.|-..+-.
T Consensus 109 Yp~~i~~L~~~ 119 (203)
T PF09363_consen 109 YPWLIHRLLFG 119 (203)
T ss_dssp EHHHHHHHTTT
T ss_pred CHHHHHHHhcC
Confidence 56666665544
No 114
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=90.04 E-value=0.87 Score=37.55 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHH---HHhCCCceeechh-hHHHHHHHHHHHhccCCeEEEEec
Q psy8699 7 WTGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQ---EKYGKHRVFNTPL-SEQGIVGFGIGLAVSGATAIAEIQ 81 (325)
Q Consensus 7 ~~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~---~~~~p~r~~~~gI-aE~~~v~~a~GlA~~G~~p~~~it 81 (325)
+++-.+|+.+.++ .+-++.+--+... ++.+. +.. | .+.+.+. .|...+|+|+|+.++|.+|-.- +
T Consensus 3 kvn~seav~e~mkdagIdfa~slPC~~-------lk~ll~lveed-p-~i~~i~vtREEeg~GIcAGa~lAGkk~ail-m 72 (172)
T COG4032 3 KVNPSEAVYEAMKDAGIDFACSLPCDN-------LKNLLPLVEED-P-EIPEIPVTREEEGVGICAGAYLAGKKPAIL-M 72 (172)
T ss_pred ccCHHHHHHHHHHHcCCcEEEeccHHH-------HHhHHHHHhcC-C-CcccccccchhcceeeehhhhhcCCCcEEE-E
Confidence 4566778877665 3334333222211 33333 333 2 2444443 7999999999999999999888 4
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCC-Ch--hHHHHHcCCCCcEEEeeCCHHHHHHHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYH-SQ--SPEAYFAHTPGIKVVIPRGPYKAKGLL 158 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~-~~--~d~~~~~~ip~~~v~~P~~~~e~~~~~ 158 (325)
..+.+.... |.++.... ....+.. +++. +-|...++-.-| +. ..-.++..+ ++.-+.|-.++|+...+
T Consensus 73 QnsGlGNsi----Nal~SL~~--ty~iPl~-ml~S-hRG~~~E~i~AQVpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li 143 (172)
T COG4032 73 QNSGLGNSI----NALASLYV--TYKIPLL-MLAS-HRGVLKEGIEAQVPMGRALPKILEGL-ELPTYTIIGPEEALPLI 143 (172)
T ss_pred eccCcchHH----HHHHHHHH--Hhccchh-hhhh-ccchhhcCCccccccchhhHHHHhhc-CCcccccCCHHHHHHHH
Confidence 555553322 22221111 1111211 2211 123222221111 11 112334433 66778889999977776
Q ss_pred HHhH----hCCCcEEEecc
Q psy8699 159 LSCI----KDKDPCIFFEP 173 (325)
Q Consensus 159 ~~a~----~~~~Pv~i~~~ 173 (325)
..+. ++..|+.++.+
T Consensus 144 ~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 144 ENAILDAFENSRPVAVLLS 162 (172)
T ss_pred HHHHHHHHHcCCceEEEec
Confidence 6554 46889998765
No 115
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.92 E-value=15 Score=37.51 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=88.2
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccH
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYI 86 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~ 86 (325)
+..+++.+.+ +.+=+.++.-+-.. .....+.+.+.-+ =+++.+ -.|++++.+|-|.|.. |.-.+|..+.++.+
T Consensus 4 t~~~~l~~~L~~~GV~~vFg~pG~~---~~~l~dal~~~~~-i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~ 78 (578)
T PRK06546 4 TVAEQLVEQLVAAGVKRIYGIVGDS---LNPIVDAVRRTGG-IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGN 78 (578)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCc---hHHHHHHHhccCC-CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcH
Confidence 5577888744 45555555443211 1011233322111 146666 4999999999999988 44445554667877
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK- 163 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~- 163 (325)
..++--+. ++-..+.| |++.+...... .-+.+|..++.++++.+-.+ .+...+++++...++.|++
T Consensus 79 ~N~~~gl~-~A~~~~~P---------vl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~ 147 (578)
T PRK06546 79 LHLINGLY-DAHRSGAP---------VLAIASHIPSAQIGSGFFQETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQH 147 (578)
T ss_pred HHHHHHHH-HHHhcCCC---------EEEEeCCCCccccCCCCccccChhhhcccceee-EeEeCCHHHHHHHHHHHHHH
Confidence 66665554 33322222 22222111111 11346656667788866443 4566778888877777776
Q ss_pred ---CCCcEEEeccccccc
Q psy8699 164 ---DKDPCIFFEPKVLYR 178 (325)
Q Consensus 164 ---~~~Pv~i~~~~~l~~ 178 (325)
..+||+|-.|..+..
T Consensus 148 A~~~~GPV~l~lP~Dv~~ 165 (578)
T PRK06546 148 AVAGGGVSVVTLPGDIAD 165 (578)
T ss_pred HhcCCCCEEEEcChhhhh
Confidence 378999998875543
No 116
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=89.90 E-value=5.8 Score=40.71 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=87.9
Q ss_pred chHHHHHHHHHh-cCCCEEEEc-CcCCCCcccccchhHHHHhCC-CceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFG-EDVGFGGVFRCSLGLQEKYGK-HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~-~D~~~~g~~~~~~~~~~~~~p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
.+..++|.+.++ .+=+.++.- ++-. ....+.+.+.. + =+|+.+ -.|++++.+|-|.|.. |...++..|+.
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFGvpG~~~----~~l~dal~~~~-~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~G 76 (597)
T PRK08273 3 QTVADFILERLREWGVRRVFGYPGDGI----NGLLGALGRAD-DKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSG 76 (597)
T ss_pred ccHHHHHHHHHHHCCCCEEEEeCCCch----HHHHHHHHhcc-CCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456788888554 444444433 3211 11133343211 1 246665 5999999999999976 65556555888
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCC-CcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTP-GIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip-~~~v~~P~~~~e~~~~~~~a 161 (325)
+.+..++.-|- ++-..+.|. +++.+...... ....+|..+..++++.+- -. .....++.++...++.|
T Consensus 77 PG~~n~~~gi~-~A~~d~vPv--------l~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A 146 (597)
T PRK08273 77 PGAIHLLNGLY-DAKLDHVPV--------VAIVGQQARAALGGHYQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRA 146 (597)
T ss_pred ccHHHHHHHHH-HHHhcCCCE--------EEEecCCchhhcCCCCCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHH
Confidence 98877766654 333222222 22221111111 123455555667777653 22 34556677777777766
Q ss_pred Hh----CCCcEEEeccccccc
Q psy8699 162 IK----DKDPCIFFEPKVLYR 178 (325)
Q Consensus 162 ~~----~~~Pv~i~~~~~l~~ 178 (325)
++ .++||+|-.|..+..
T Consensus 147 ~~~A~~~~gPV~i~iP~Dv~~ 167 (597)
T PRK08273 147 VRTALAERTVTAVILPNDVQE 167 (597)
T ss_pred HHHHhhCCCCEEEEeCcchhh
Confidence 65 478999999876543
No 117
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=89.62 E-value=6.5 Score=33.09 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=65.0
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC---CCCC-
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV---GHGA- 126 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~---g~g~- 126 (325)
+++.+ -.|++++.+|.|.+..-...++..+..+.+..++.-|.+ +...+.| +++.+..... +.+.
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~-A~~~~~P---------vl~i~g~~~~~~~~~~~~ 105 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAG-AYAEHVP---------VVHIVGAPSTKAQASGLL 105 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHH-HHHcCCC---------EEEEecCCCccccccccc
Confidence 45544 699999999999998862334443567888777777753 4322222 2222211111 1111
Q ss_pred CCC-----Chh-HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEecc
Q psy8699 127 LYH-----SQS-PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFEP 173 (325)
Q Consensus 127 th~-----~~~-d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~~ 173 (325)
-|+ .++ ..++++.+-.+ .....++.++..+++.|++ .++||+|-.|
T Consensus 106 ~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 106 LHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred eeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 122 223 35777776444 3344677777777777776 4789999655
No 118
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=89.54 E-value=8.2 Score=32.94 Aligned_cols=113 Identities=9% Similarity=-0.058 Sum_probs=62.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..+..|.|++++ .-+++++| ..+.. +.....|. .+...++|... +++-. .+..
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~m~~~eL~-ta~~~~l~vi~------vV~NN-~~~g~~ 108 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAV-SGDGGFMMNSQELE-TAVRLKIPLVV------LIWND-NGYGLI 108 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhHHHHHH-HHHHHCCCeEE------EEEEC-CcchHH
Confidence 678886531 112344577777765 45677775 66642 33333343 35555554421 12221 1111
Q ss_pred C------CC----CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 G------HG----ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 g------~g----~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
. .+ ......+..++.+.+ |+.-+...+++|++..++++++.++|.+|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 166 (177)
T cd02010 109 KWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVID 166 (177)
T ss_pred HHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 000111222344444 677778899999999999999999999993
No 119
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.37 E-value=3.5 Score=42.24 Aligned_cols=151 Identities=10% Similarity=-0.043 Sum_probs=88.0
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGK--HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p--~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+-.++|.+.+ +.+=+.++.-+... ...|.+.... =+++.+ ..|++++.+|-|.|.. |...++..|+.+
T Consensus 2 ~~~~~l~~~L~~~Gv~~vFg~pG~~-------~~~l~~al~~~~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GP 73 (586)
T PRK06276 2 KGAEAIIKALEAEGVKIIFGYPGGA-------LLPFYDALYDSDLIHILT-RHEQAAAHAADGYARASGKVGVCVATSGP 73 (586)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCcc-------hHHHHHHHHhCCCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 3457777744 44455555433211 2233332201 256666 5999999999999977 544455547888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
.+..++--+. ++-..+.|. +++.+...... ..+.+|..+..++++.+-.... .-.+++++...++.|++
T Consensus 74 G~~n~l~~i~-~A~~~~~Pv--------l~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~-~v~~~~~i~~~i~~A~~ 143 (586)
T PRK06276 74 GATNLVTGIA-TAYADSSPV--------IALTGQVPTKLIGNDAFQEIDALGIFMPITKHNF-QIKKPEEIPEIFRAAFE 143 (586)
T ss_pred cHHHHHHHHH-HHHhcCCCE--------EEEeCCCCccccCCCCCccccHhhHHhhhcceEE-ecCCHHHHHHHHHHHHH
Confidence 8866766665 343333332 22221111111 1234666667788887755433 34677888888888877
Q ss_pred C-----CCcEEEecccccc
Q psy8699 164 D-----KDPCIFFEPKVLY 177 (325)
Q Consensus 164 ~-----~~Pv~i~~~~~l~ 177 (325)
. ++||||-.|..+.
T Consensus 144 ~A~~~~~GPV~l~iP~Dv~ 162 (586)
T PRK06276 144 IAKTGRPGPVHIDLPKDVQ 162 (586)
T ss_pred HhcCCCCCcEEEEcChhHH
Confidence 2 6899999987553
No 120
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=89.34 E-value=13 Score=33.47 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=28.1
Q ss_pred HHHcCC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 135 AYFAHT--PGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 135 ~~~~~i--p~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.+.+++ +.+..+...+++|++.+++++++.++|++|
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 344446789999999999999999999998
No 121
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=89.19 E-value=2.8 Score=35.49 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=64.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG 123 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g 123 (325)
|.+|+..+. +=-..+++|+|++++. -++++++ ..+.. +.....|. .++..++|... +++-.. .+...
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i-~GDG~f~~~~~el~-ta~~~~lpv~i------vv~NN~~~~~~~ 109 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLV-EGDGAFGFSGMELE-TAVRYNLPIVV------VVGNNGGWYQGL 109 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEE-EcchhhcCCHHHHH-HHHHcCCCEEE------EEEECcccccch
Confidence 778887542 2224666888888775 4777774 67743 33344453 56666665421 111111 11110
Q ss_pred C-------CC-----CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 124 H-------GA-----LYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 124 ~-------g~-----th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. +. .++..+...+.++. |+..+.-.+.+|++.+++++.+.++|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 167 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALI 167 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 0 00 01112222344444 66777778999999999999988999998
No 122
>PLN02573 pyruvate decarboxylase
Probab=89.18 E-value=7 Score=40.01 Aligned_cols=205 Identities=15% Similarity=0.066 Sum_probs=104.4
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
.+..++|.+.++ .+=+.++.-+- +. ...|.+..- ++ +++.+ -.|++++.+|-|-|.. | ..++..|+
T Consensus 16 ~~~a~~l~~~L~~~Gv~~vFGvpG----~~---~~~l~dal~~~~~i~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~ 86 (578)
T PLN02573 16 ATLGRHLARRLVEIGVTDVFSVPG----DF---NLTLLDHLIAEPGLNLIGC-CNELNAGYAADGYARARG-VGACVVTF 86 (578)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCC----Cc---hHHHHHHHhhcCCceEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEec
Confidence 356788888554 44454443321 11 233333320 11 45544 6999999999999966 7 77766688
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC--CCC-CCCCCh------hHHHHHcCCCCcEEEeeCCHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--GHG-ALYHSQ------SPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g~g-~th~~~------~d~~~~~~ip~~~v~~P~~~~e 153 (325)
.+....+..-+-+ +-..+.|. +++.+..... +.+ ..||.+ .+.++++.+-.+ .....++++
T Consensus 87 GpG~~n~~~gla~-A~~d~~Pv--------l~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~ 156 (578)
T PLN02573 87 TVGGLSVLNAIAG-AYSENLPV--------ICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVINNLED 156 (578)
T ss_pred CccHHHHHHHHHH-HHHhCCCE--------EEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EEEeCCHHH
Confidence 8887666655543 32222222 2222211111 112 235442 223566665332 333456666
Q ss_pred HHHHHHHhHh----CCCcEEEecccccccccccCCC--CCCccc-C-CC-----ce------eEeee-CCcEEEEEechh
Q psy8699 154 AKGLLLSCIK----DKDPCIFFEPKVLYRAAVEDVP--EDYYEL-P-LD-----KA------DILVA-GTDVTLIGWGTQ 213 (325)
Q Consensus 154 ~~~~~~~a~~----~~~Pv~i~~~~~l~~~~~~~~~--~~~~~~-~-~g-----k~------~~~~~-g~dv~ii~~G~~ 213 (325)
+...++.|++ .++||||-.|..+.....+... +..... + .. .. ..++. ..-++|++.|..
T Consensus 157 ~~~~l~~A~~~A~~~~gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~ 236 (578)
T PLN02573 157 AHELIDTAISTALKESKPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLR 236 (578)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhc
Confidence 6655665554 5789999998765432211110 000000 0 00 00 11222 345677777765
Q ss_pred HHHHHHHHHHHHhhcCCc
Q psy8699 214 VHVLREVAGLAKEQLGVS 231 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~ 231 (325)
...+.+++..|.++.|+-
T Consensus 237 ~~~a~~~l~~lae~~~~P 254 (578)
T PLN02573 237 VAKACKAFVELADASGYP 254 (578)
T ss_pred ccchHHHHHHHHHHhCCC
Confidence 555666666666654654
No 123
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=88.70 E-value=4.4 Score=41.15 Aligned_cols=235 Identities=11% Similarity=-0.007 Sum_probs=122.5
Q ss_pred hHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhC-C-CceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYG-K-HRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~-p-~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+..+++.+.++ .+=+.++.-+. +. ...+.+... + =+++.+ -.|++++.+|-|-|.. |...++..|..+
T Consensus 4 ~~~~~l~~~L~~~GV~~vFGvpG----~~---~~~l~~~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GP 75 (554)
T TIGR03254 4 DGFHLVIDALKLNGINTIYGVVG----IP---VTDLARLAQAKGMRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAP 75 (554)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCC----cc---hhHHHHHHhhcCCcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCc
Confidence 45677777444 44554444332 11 223333220 1 256665 6999999999999977 554565557788
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC--C-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--G-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
.+..++--+- ++-..+.|. +++.+..... + ..+.+|..+..++++.+-.. .+...++.++...++.|
T Consensus 76 G~~N~~~gia-~A~~~~~Pv--------l~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA 145 (554)
T TIGR03254 76 GFLNGLTALA-NATTNCFPM--------IMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARA 145 (554)
T ss_pred cHHhHHHHHH-HHHhcCCCE--------EEEEccCCccccccCCCCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHH
Confidence 8766665554 343333332 2222111111 1 12346666667888877554 45556788877777777
Q ss_pred Hh-----CCCcEEEecccccccccccC--C--C---C-CCcccC-CCce------eEeee-CCcEEEEEechhHHHHHHH
Q psy8699 162 IK-----DKDPCIFFEPKVLYRAAVED--V--P---E-DYYELP-LDKA------DILVA-GTDVTLIGWGTQVHVLREV 220 (325)
Q Consensus 162 ~~-----~~~Pv~i~~~~~l~~~~~~~--~--~---~-~~~~~~-~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A 220 (325)
++ -.+||||-.|.-+.....+. . + . ...... .... ..+.. ..-+++++.|.....+.++
T Consensus 146 ~~~A~~~~pGPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~ 225 (554)
T TIGR03254 146 IRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEE 225 (554)
T ss_pred HHHHhcCCCCcEEEEcCHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHH
Confidence 76 25889999887554332111 0 0 0 000000 0000 11222 3457777777765556666
Q ss_pred HHHHHhhcCCcEEEEec-------ccccCCCHHH-HHHHHhccCcEEEEec
Q psy8699 221 AGLAKEQLGVSCEVIDL-------VSILPWDRET-VFQSARKTGRVIIAHE 263 (325)
Q Consensus 221 ~~~L~~~~gi~~~vi~~-------~~l~P~d~~~-l~~~~~~~~~vivvEe 263 (325)
...|.+++|+-+ +.- +.-.|+-... ..+.++..+.||++-.
T Consensus 226 l~~lae~~~~pv--~tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~ 274 (554)
T TIGR03254 226 IREFVEKTGIPF--LPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGA 274 (554)
T ss_pred HHHHHHHHCCCE--EEcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECC
Confidence 666655546543 221 1112222111 2235666777777653
No 124
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=86.86 E-value=8.3 Score=39.23 Aligned_cols=153 Identities=11% Similarity=0.056 Sum_probs=85.9
Q ss_pred chHHHHHHHHHh-cCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQLL-SSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~~-~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.+..++|.+.++ .+=+.++.-+--. .....+.+. +. ++ +++.+ ..|++++.+|-|.|.. |...++..|+++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~---~~~l~~~l~-~~-~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp 82 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSR---STPLTLAAA-EH-PRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT 82 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCc---cHHHHHHHH-hC-CCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc
Confidence 566788888554 4444444333211 001123332 12 22 56655 5999999999999976 544455558999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEEeeCCHH-----HHHHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVVIPRGPY-----KAKGL 157 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~-----e~~~~ 157 (325)
.+..++.-|. ++-..+.| |++.+...... .-+.+|..+..++++.+-...+-.|.... .+..+
T Consensus 83 G~~N~l~~i~-~A~~~~~P---------vl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~ 152 (568)
T PRK07449 83 AVANLYPAVI-EAGLTGVP---------LIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTT 152 (568)
T ss_pred HHHhhhHHHH-HHhhcCCc---------EEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHH
Confidence 8877766664 34323332 22332111111 22447777778888877655555565521 13345
Q ss_pred HHHhHh----CCCcEEEeccccc
Q psy8699 158 LLSCIK----DKDPCIFFEPKVL 176 (325)
Q Consensus 158 ~~~a~~----~~~Pv~i~~~~~l 176 (325)
++.+.. ..+||+|-.|..+
T Consensus 153 ~~a~~~a~~~~~GPV~i~iP~Dv 175 (568)
T PRK07449 153 IDAALAAQTLQAGPVHINCPFRE 175 (568)
T ss_pred HHHHHHhcCCCCCCEEEeCCCCC
Confidence 555333 3799999988643
No 125
>PRK06154 hypothetical protein; Provisional
Probab=86.01 E-value=20 Score=36.55 Aligned_cols=205 Identities=12% Similarity=0.030 Sum_probs=109.5
Q ss_pred cchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-C--CeEEEEecc
Q psy8699 7 WTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-G--ATAIAEIQF 82 (325)
Q Consensus 7 ~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G--~~p~~~it~ 82 (325)
.++..+++.+.+ +.+-+.++.-+ + . ...+.+.+ - .=+++.+ -.|++++.+|-|-|.. | .-.++..|+
T Consensus 19 ~~~~a~~l~~~L~~~GV~~vFGip--~--~--~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~~~t~ 89 (565)
T PRK06154 19 TMKVAEAVAEILKEEGVELLFGFP--V--N--ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGVFAVQY 89 (565)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCc--C--H--HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 356689998854 55566666544 1 1 12444432 2 1256665 6999999999999975 3 344554478
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
.+.+..++--+. ++...+.| |++.+.......-......+...+++.+-.+ .....++.++...++.|+
T Consensus 90 GPG~~N~~~gla-~A~~~~~P---------vl~i~G~~~~~~~~~~~~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~ 158 (565)
T PRK06154 90 GPGAENAFGGVA-QAYGDSVP---------VLFLPTGYPRGSTDVAPNFESLRNYRHITKW-CEQVTLPDEVPELMRRAF 158 (565)
T ss_pred CccHHHHHHHHH-HHhhcCCC---------EEEEeCCCCcccccCCCCcchhhhHhhccee-EEECCCHHHHHHHHHHHH
Confidence 888876765554 34323332 2222211111110111112334667766443 445677888887777777
Q ss_pred h-----CCCcEEEecccccccccccCCCC---C--CcccCCCce------eEeee-CCcEEEEEechhHHHHHHHHHHHH
Q psy8699 163 K-----DKDPCIFFEPKVLYRAAVEDVPE---D--YYELPLDKA------DILVA-GTDVTLIGWGTQVHVLREVAGLAK 225 (325)
Q Consensus 163 ~-----~~~Pv~i~~~~~l~~~~~~~~~~---~--~~~~~~gk~------~~~~~-g~dv~ii~~G~~~~~a~~A~~~L~ 225 (325)
+ .++||+|-.|..+.....+..+. . ......... ..+.. ..-++|++.|.....+.+++..|.
T Consensus 159 ~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~la 238 (565)
T PRK06154 159 TRLRNGRPGPVVLELPVDVLAEELDELPLDHRPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELA 238 (565)
T ss_pred HHHhcCCCceEEEecchHHhhhhcccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHH
Confidence 6 26899999887654332211000 0 000000100 11222 345777777776556666776676
Q ss_pred hhcCCc
Q psy8699 226 EQLGVS 231 (325)
Q Consensus 226 ~~~gi~ 231 (325)
++.|+-
T Consensus 239 e~l~~P 244 (565)
T PRK06154 239 ELLEIP 244 (565)
T ss_pred HHhCCC
Confidence 654544
No 126
>KOG1185|consensus
Probab=85.70 E-value=32 Score=34.36 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=76.7
Q ss_pred HHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC
Q psy8699 45 EKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG 123 (325)
Q Consensus 45 ~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g 123 (325)
++.| =||+.+= +||+++-.|..+++- |..-++.++..+.+..++--+.| +-.+.||. +++.+++.-.-
T Consensus 48 qalG-Ik~I~~R-nEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~N-A~~n~wPl--------l~IgGsa~~~~ 116 (571)
T KOG1185|consen 48 QALG-IKFIGTR-NEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVAN-AQMNCWPL--------LLIGGSASTLL 116 (571)
T ss_pred HHcC-CeEeecc-cHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhh-hhhccCcE--------EEEecccchhh
Confidence 4553 5888884 999999988888866 44446666778888777666653 33333432 22232211111
Q ss_pred -CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEecccc
Q psy8699 124 -HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK-----DKDPCIFFEPKV 175 (325)
Q Consensus 124 -~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~-----~~~Pv~i~~~~~ 175 (325)
.-|..|-.++..++|..=.. +..|.+..+.-..++.|++ ..+|+|+=.|-.
T Consensus 117 ~~rGafQe~dQvel~rp~~K~-~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 117 ENRGAFQELDQVELFRPLCKF-VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hcccccccccHHhhhhhhhhh-ccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 12446666777777765333 6678888887777777776 388999987765
No 127
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=84.65 E-value=35 Score=32.85 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=77.8
Q ss_pred chHHHHHHHHHhcC--CCEEEEcCcCCCCcccccchhHHH-HhC-----CCceeechhhHHHHHHHHHHHhcc-CCeEEE
Q psy8699 8 TGFFQSSPSQLLSS--QGGVLFGEDVGFGGVFRCSLGLQE-KYG-----KHRVFNTPLSEQGIVGFGIGLAVS-GATAIA 78 (325)
Q Consensus 8 ~~~~~a~~~~~~~~--~~vv~~~~D~~~~g~~~~~~~~~~-~~~-----p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~ 78 (325)
++-.+++..+.+.- +++++ .|.|.. ...+.. +.. |.+|+.+|- =-.+..+|.|+|++ .-++++
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV--~~~G~~-----s~el~~~~~~~~~~~~~~f~~~Gs-MG~a~p~AlG~ala~p~r~Vv 243 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIV--STTGKT-----SRELYELRDRIGQGHARDFLTVGS-MGHASQIALGLALARPDQRVV 243 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEE--ECCCCC-----cHHHHHhhcccccCCCCceEeech-hhhHHHHHHHHHHHCCCCCEE
Confidence 56777887765543 33444 455531 233222 211 567776542 22445688888866 346777
Q ss_pred Eeccccc--HHHHHHHHHHHHhhcccccCCceeccceEEeccC-ccCCCCCCCCChhHH-HHHcCCCCc-EEEeeCCHHH
Q psy8699 79 EIQFADY--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAVGHGALYHSQSPE-AYFAHTPGI-KVVIPRGPYK 153 (325)
Q Consensus 79 ~it~~~F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~g~g~th~~~~d~-~~~~~ip~~-~v~~P~~~~e 153 (325)
++ -.+. ++.. ..+. .++..+..+ +.. +++-..+ +..+...++...-|. .+.++. |. ..+...+..|
T Consensus 244 ~i-~GDGsflm~~-~eL~-t~~~~~~~n--li~---VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~e 314 (361)
T TIGR03297 244 CL-DGDGAALMHM-GGLA-TIGTQGPAN--LIH---VLFNNGAHDSVGGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEE 314 (361)
T ss_pred EE-EChHHHHHHH-HHHH-HHHHhCCCC--eEE---EEEcCccccccCCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHH
Confidence 75 6664 3332 2332 344333211 111 2222111 112222222222333 455555 43 4678899999
Q ss_pred HHHHHHHhHhCCCcEEEec
Q psy8699 154 AKGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 154 ~~~~~~~a~~~~~Pv~i~~ 172 (325)
+..+++++.+.++|.+|-.
T Consensus 315 L~~al~~a~~~~gp~lIeV 333 (361)
T TIGR03297 315 LETALTAASSANGPRLIEV 333 (361)
T ss_pred HHHHHHHHHhCCCcEEEEE
Confidence 9999999998899999843
No 128
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=84.34 E-value=11 Score=38.10 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=65.9
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC--CCCC-
Q psy8699 51 RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--GHGA- 126 (325)
Q Consensus 51 r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g~g~- 126 (325)
|++.+ -.|++++-+|-|-|.. |...++..|+.+....++.-|. .+...+.|. +++.+..... +.+.
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia-~A~~~~~Pv--------l~i~g~~~~~~~~~~~~ 109 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIA-GAYAEKSPV--------VVISGAPGTTEGNAGLL 109 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHH-HHhhcCCCE--------EEEECCCCcccccCCce
Confidence 56664 6999999999999987 5555666578888766665554 333223222 2222111111 1122
Q ss_pred -CCCC--hh-HHHHHcCCCCcEEEeeCCHHHHH----HHHHHhHhCCCcEEEeccccccc
Q psy8699 127 -LYHS--QS-PEAYFAHTPGIKVVIPRGPYKAK----GLLLSCIKDKDPCIFFEPKVLYR 178 (325)
Q Consensus 127 -th~~--~~-d~~~~~~ip~~~v~~P~~~~e~~----~~~~~a~~~~~Pv~i~~~~~l~~ 178 (325)
.|+. .+ ...+++.+-.+.. ...++.++. ++++.|+..++||+|-.|..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~vtk~~~-~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~~ 168 (535)
T TIGR03394 110 LHHQGRTLDSQFQVFKEVTCDQA-VLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVN 168 (535)
T ss_pred eEeeccchHHHHHhhhhheEEEE-EeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhcc
Confidence 1333 22 3467776533322 234444444 44444555689999999876543
No 129
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=84.26 E-value=6 Score=34.49 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred CCceeechh-hHH-HHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-SEQ-GIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~-~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|++.+- .=. ..++.|+|++++ .-+++++| -.+.. +.....|. .+...++|... +|+-. .+..
T Consensus 47 ~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i-~GDG~f~m~~~eL~-Ta~~~~lpvii------vV~NN-~~yg~~ 117 (202)
T cd02006 47 PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVAL-SGDYDFQFMIEELA-VGAQHRIPYIH------VLVNN-AYLGLI 117 (202)
T ss_pred CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEE-EeChHhhccHHHHH-HHHHhCCCeEE------EEEeC-chHHHH
Confidence 678887642 111 245578887766 45777885 67743 33334443 46665665421 12211 1110
Q ss_pred C------CCC----C-C----------CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q psy8699 123 G------HGA----L-Y----------HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIF 170 (325)
Q Consensus 123 g------~g~----t-h----------~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i 170 (325)
. .+. + + +..+...+.+++ |+.-+...++.|+..+++++++ .++|++|
T Consensus 118 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~li 189 (202)
T cd02006 118 RQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVV 189 (202)
T ss_pred HHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEE
Confidence 0 000 0 0 012222344444 6777888999999999999995 6899998
No 130
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=84.22 E-value=8.2 Score=32.83 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=61.3
Q ss_pred CCcee-echhhHH-HHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccC-ccCCC
Q psy8699 49 KHRVF-NTPLSEQ-GIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAVGH 124 (325)
Q Consensus 49 p~r~~-~~gIaE~-~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~g~ 124 (325)
|.+++ +.|..-. ..++.|+|++++.-+|++++ ..+.. +.....|. .+...++|.. . +++-..+ |....
T Consensus 41 ~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i-~GDGsf~m~~~eL~-ta~~~~l~v~---i---vVlNN~~~g~~~~ 112 (175)
T cd02009 41 TVRVFANRGASGIDGTLSTALGIALATDKPTVLL-TGDLSFLHDLNGLL-LGKQEPLNLT---I---VVINNNGGGIFSL 112 (175)
T ss_pred CceEEecCCccchhhHHHHHHHHHhcCCCCEEEE-EehHHHHHhHHHHH-hccccCCCeE---E---EEEECCCCchhee
Confidence 67777 4332211 35567777776646777775 67743 33344443 3444344332 1 2222211 10000
Q ss_pred CC---------CC----CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 125 GA---------LY----HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 125 g~---------th----~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.. .. +..+..++.+++ |+.-+...+++|+...++++++.++|.+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 113 LPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVI 170 (175)
T ss_pred ccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 00 112223444444 56667778999999999999999999998
No 131
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=84.00 E-value=18 Score=35.47 Aligned_cols=150 Identities=12% Similarity=0.057 Sum_probs=79.1
Q ss_pred HHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHH
Q psy8699 11 FQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIF 87 (325)
Q Consensus 11 ~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~ 87 (325)
.++|.+.+ +.+=+.++..+--. .....+.+. +. ++ +++.+ ..|+++..+|-|.|.. |...++..|+++...
T Consensus 3 ~~~l~~~L~~~GV~~vFg~pG~~---~~~l~dal~-~~-~~i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 76 (432)
T TIGR00173 3 ASVLVEELVRLGVRHVVISPGSR---STPLALAAA-EH-PRLRVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVA 76 (432)
T ss_pred HHHHHHHHHHcCCCEEEECCCcc---cHHHHHHHH-hC-CCcEEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHh
Confidence 46666644 44455555443211 100122332 22 23 55555 6999999999999987 644455558888876
Q ss_pred HHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCc--EEEeeCC-------HHHHHH
Q psy8699 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGI--KVVIPRG-------PYKAKG 156 (325)
Q Consensus 88 ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~--~v~~P~~-------~~e~~~ 156 (325)
.++--+- ++-..+.| +++.+..-... .-+.+|..++.++++.+-.+ .|-.|.+ +..+.+
T Consensus 77 N~l~gl~-~A~~~~~P---------vl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~ 146 (432)
T TIGR00173 77 NLLPAVI-EASYSGVP---------LIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDR 146 (432)
T ss_pred hhhHHHH-HhcccCCc---------EEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHH
Confidence 6655554 23322222 22222111111 12345656667788876433 3333443 233444
Q ss_pred HHHHhHh-CCCcEEEeccccc
Q psy8699 157 LLLSCIK-DKDPCIFFEPKVL 176 (325)
Q Consensus 157 ~~~~a~~-~~~Pv~i~~~~~l 176 (325)
+++.|.. .++||++-.|..+
T Consensus 147 A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 147 AVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred HHHHhhCCCCCCEEEeCCCCC
Confidence 4444444 3689999998755
No 132
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=82.47 E-value=13 Score=31.82 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=63.1
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-S-EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-a-E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- . =-..++.|.|++++. -++++++ ..+.. +.....|. .++..++|... +++-. .+..
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~~~~~eL~-ta~~~~lpi~i------vV~nN-~~~~~~ 110 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICI-DGDGSFQMNIQELA-TAAQYNLPVKI------VILNN-GSLGMV 110 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEE-EcccHHhccHHHHH-HHHHhCCCeEE------EEEEC-CccHHH
Confidence 678887532 1 113556788887663 4666664 66642 33334454 46655554421 22222 1110
Q ss_pred --------CC--CCCCC--ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 --------GH--GALYH--SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 --------g~--g~th~--~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+. ...+. ..+..++.+++ |+.-..-.+..|+.+.++++++.++|++|-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 111 RQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 11111 22223455555 666667788999999999999999999993
No 133
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=82.46 E-value=25 Score=32.71 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=26.4
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 136 YFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 136 ~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+.....-.-.....+++|+..++++|++.++|++|
T Consensus 147 ~A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslI 181 (287)
T TIGR02177 147 IALGYTFVARGFSGDVAHLKEIIKEAINHKGYALV 181 (287)
T ss_pred HhCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 33344333333369999999999999999999999
No 134
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=82.07 E-value=3.7 Score=29.30 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=45.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~~ 273 (325)
+++|.+. +....|.+|.+.|++. |+..+.+++..-.+. .+.+.+.... +-.++++... ..||+.+.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~-gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~-~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREK-GLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEK-LVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHC-CCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCE-EEeCHHHH
Confidence 5666666 5567899999999998 999999998864332 2345444333 2367777765 56888654
No 135
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=81.49 E-value=14 Score=34.58 Aligned_cols=33 Identities=9% Similarity=-0.087 Sum_probs=30.1
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 138 AHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 138 ~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
...|-+....|+++.++...++.|++.++|.+|
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I 202 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFI 202 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 346778889999999999999999999999999
No 136
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=80.61 E-value=29 Score=32.12 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=23.5
Q ss_pred EeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 146 VIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 146 ~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
....++.|++.+++.|++.++|++|
T Consensus 172 ~~v~~~~el~~al~~Al~~~Gp~lI 196 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFSHKGFSFF 196 (277)
T ss_pred EccCCHHHHHHHHHHHHhCCCCEEE
Confidence 5789999999999999999999999
No 137
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=80.18 E-value=38 Score=30.65 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=57.7
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHH-----HHHHHhccCcEEEEecCCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET-----VFQSARKTGRVIIAHEAPLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~-----l~~~~~~~~~vivvEe~~~~gglg~~v~~~ 277 (325)
+=+|+++|. ...+..+|++.+++..+.++.++++.+-.|-+.+. |..+-++++..|-.=+|.. |+...+++.
T Consensus 114 kPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~Av 191 (241)
T PF03102_consen 114 KPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIAAV 191 (241)
T ss_dssp S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHHHH
Confidence 347889985 66789999999955437789999999999988763 3333335677778888864 565555554
Q ss_pred HHhhccccCCCCeE-EEcccCCCCcccccccCCCCHHHHHHHHHH
Q psy8699 278 IQDKCFLSLEAPIR-RVTGYDTPFPHIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 278 l~e~~~~~~~~~v~-~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~ 321 (325)
-. ++.+. +-.-.+...+-....+-+ +++.+.+-++.
T Consensus 192 al-------GA~vIEKHfTldr~~~g~Dh~~Sl-~p~el~~lv~~ 228 (241)
T PF03102_consen 192 AL-------GARVIEKHFTLDRNLKGPDHKFSL-EPDELKQLVRD 228 (241)
T ss_dssp HT-------T-SEEEEEB-S-TTSCSTTGCCCB--HHHHHHHHHH
T ss_pred Hc-------CCeEEEEEEECCCCCCCCChhhcC-CHHHHHHHHHH
Confidence 32 23332 332444333222233445 77765554443
No 138
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=79.85 E-value=26 Score=35.53 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=63.1
Q ss_pred CCceeech-hhHH-HHHHHHHHHhccC--CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 49 KHRVFNTP-LSEQ-GIVGFGIGLAVSG--ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 49 p~r~~~~g-IaE~-~~v~~a~GlA~~G--~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.+|+..+ ..=. ..+..|.|++++. -+|+++| -++.. +.....|. .+...+++... +++-. .+..
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i-~GDGsf~~~~~eL~-Ta~~~~lpi~i------vV~NN-~~~g~ 456 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISF-VGDGGFTMTMMELI-TAKKYDLPVKI------IIYNN-SKLGM 456 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEE-EcccHHhhhHHHHH-HHHHHCCCeEE------EEEEC-Cccch
Confidence 56666632 1111 1445677877664 5788885 67743 33344443 46665565421 22221 1211
Q ss_pred ------CCCCCC-----CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ------GHGALY-----HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ------g~g~th-----~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
-.+..+ +..+..++..++ |+.-....++.|++..++++++.++|.+|
T Consensus 457 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 514 (549)
T PRK06457 457 IKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVL 514 (549)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 001111 112223444444 77777889999999999999999999999
No 139
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=79.79 E-value=39 Score=29.13 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=60.0
Q ss_pred CCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCC
Q psy8699 49 KHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGH 124 (325)
Q Consensus 49 p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~ 124 (325)
|.+|+..|-- -..++.|.|++++ .-++++++ -.+.. +.....|. .++..+.+. +. +++..-.+. .+.
T Consensus 41 ~~~~~~~g~m-G~~lpaAiGaala~p~~~Vv~i-~GDG~f~m~~~eL~-ta~~~~l~~--i~----ivV~NN~~yg~~~~ 111 (188)
T cd03371 41 AQDFLTVGSM-GHASQIALGIALARPDRKVVCI-DGDGAALMHMGGLA-TIGGLAPAN--LI----HIVLNNGAHDSVGG 111 (188)
T ss_pred cCceeecCcc-ccHHHHHHHHHHhCCCCcEEEE-eCCcHHHhhccHHH-HHHHcCCCC--cE----EEEEeCchhhccCC
Confidence 3788875321 1245677887765 35677775 66643 33333343 344433321 11 112211111 111
Q ss_pred CCCC-CChhHHHHHcCCCCcE-EEeeCCHHHHHHHHHHhHhCCCcEEEec
Q psy8699 125 GALY-HSQSPEAYFAHTPGIK-VVIPRGPYKAKGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 125 g~th-~~~~d~~~~~~ip~~~-v~~P~~~~e~~~~~~~a~~~~~Pv~i~~ 172 (325)
..+. +..+...+...+ |+. .....+..|+..+++++++.++|++|-.
T Consensus 112 ~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIev 160 (188)
T cd03371 112 QPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIEV 160 (188)
T ss_pred cCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 122333455544 554 3456799999999999999899999843
No 140
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=78.97 E-value=23 Score=32.11 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=58.3
Q ss_pred HHHHHHHHhcc------CCeEEEEecccc--cH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCC--CCC
Q psy8699 62 IVGFGIGLAVS------GATAIAEIQFAD--YI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGAL--YHS 130 (325)
Q Consensus 62 ~v~~a~GlA~~------G~~p~~~it~~~--F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~t--h~~ 130 (325)
.++.|.|+|++ ..++++. .++ |. ...++.+. .++..++++. . +++. ..+..-.+.+ ...
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i--~GDG~~~~G~~~eal~-~a~~~~l~~l--i----~vvd-nN~~~~~~~~~~~~~ 179 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVL--LGDGELQEGSVWEAAS-FAGHYKLDNL--I----AIVD-SNRIQIDGPTDDILF 179 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE--ECcccccccHHHHHHH-HHHHcCCCcE--E----EEEE-CCCccccCcHhhccC
Confidence 44567777665 4455554 455 33 24567775 5666565542 1 1111 1122112222 222
Q ss_pred hhHH-HHHcCCCCcEEEeeC--CHHHHHHHHHHhHhC-CCcEEEecc
Q psy8699 131 QSPE-AYFAHTPGIKVVIPR--GPYKAKGLLLSCIKD-KDPCIFFEP 173 (325)
Q Consensus 131 ~~d~-~~~~~ip~~~v~~P~--~~~e~~~~~~~a~~~-~~Pv~i~~~ 173 (325)
..|+ ..++++ |+.++.-. |..++...++++.+. ++|++|...
T Consensus 180 ~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 180 TEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred chhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 3343 456666 77777767 899999999999886 899999543
No 141
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=78.83 E-value=5.8 Score=29.81 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=46.8
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCChHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~gglg~ 272 (325)
+.+++|++.| +....+.+|.+.|++. |++...+++.. |.+ +.+.+.+ +=..|++... ..||+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~----~~~-~~~~l~~~~g~~tvP~vfi~g~-~iGG~~~ 79 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILE----DEE-VRQGLKEYSNWPTFPQLYVNGE-LVGGCDI 79 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCC----CHH-HHHHHHHHhCCCCCCEEEECCE-EEeCHHH
Confidence 4689999988 4788999999999998 99999999764 333 3333222 2256788765 5688865
Q ss_pred HH
Q psy8699 273 EL 274 (325)
Q Consensus 273 ~v 274 (325)
..
T Consensus 80 l~ 81 (90)
T cd03028 80 VK 81 (90)
T ss_pred HH
Confidence 43
No 142
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=78.67 E-value=5.9 Score=31.41 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=38.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
|++|.+. ..+..+.+|.+.|+++ |+...++++.. .|++.+.|.+.+++.
T Consensus 1 ~i~iy~~-p~C~~crkA~~~L~~~-gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEK-PGCANNARQKALLEAA-GHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHc-CCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 3455544 4566788999999998 99999999987 788999888877754
No 143
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=77.91 E-value=30 Score=29.95 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=23.2
Q ss_pred EeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 146 VIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 146 ~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
....++.|+.+.++++++.++|++|
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vI 179 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFV 179 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999
No 144
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=77.67 E-value=21 Score=33.13 Aligned_cols=102 Identities=11% Similarity=0.005 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcc-CCeEEEEeccccc--HHHHHHHHHHHHhhcccccCCceeccceEEec-cCccCCC--------CC--
Q psy8699 61 GIVGFGIGLAVS-GATAIAEIQFADY--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAVGH--------GA-- 126 (325)
Q Consensus 61 ~~v~~a~GlA~~-G~~p~~~it~~~F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~g~--------g~-- 126 (325)
.++.+|.|++++ .-++++++ .++. +.-.+..|. .++..+.+... +++-. ..|.++. |.
T Consensus 63 ~alp~A~GaklA~Pd~~VV~i-~GDG~~f~ig~~eL~-tA~rrn~~i~v------IV~nN~~ygmtggQ~s~~t~~g~~t 134 (279)
T PRK11866 63 RVLPIATGVKWANPKLTVIGY-GGDGDGYGIGLGHLP-HAARRNVDITY------IVSNNQVYGLTTGQASPTTPRGVKT 134 (279)
T ss_pred cHHHHHHHHHHHCCCCcEEEE-ECChHHHHccHHHHH-HHHHHCcCcEE------EEEEChhhhhhcccccCCCCCCcee
Confidence 677788888877 35677774 6776 466667776 45555554321 11111 1111110 00
Q ss_pred --CCCC-----hhHHHHHc--CCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 127 --LYHS-----QSPEAYFA--HTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 127 --th~~-----~~d~~~~~--~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+-.+ .+...+.. ..+.+....+.++.|++..++.|++.++|++|
T Consensus 135 ~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I 187 (279)
T PRK11866 135 KTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFI 187 (279)
T ss_pred eccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0000 12223333 34555666779999999999999999999999
No 145
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=77.48 E-value=23 Score=36.07 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=65.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEecc-CccC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAV 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~ 122 (325)
|.+|+..+- +=-..+..|.|++++. -++++++ .++ |++.. ..|. .+...++|... +++-.. .|..
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDGsf~~~~-~eL~-ta~~~~lpvi~------vV~NN~~~g~~ 479 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCF-SGDGSLMMNI-QEMA-TAAENQLDVKI------ILMNNEALGLV 479 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEE-EccchhhccH-HHHH-HHHHhCCCeEE------EEEeCCccccc
Confidence 678887542 2224666888887763 4566664 565 44443 3343 45655555421 222211 1110
Q ss_pred C------C-----CCCC-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 G------H-----GALY-HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 g------~-----g~th-~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
. . +..+ +..+..++.+++ |+.-+...+.+|+...++++++.++|++|-
T Consensus 480 ~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (564)
T PRK08155 480 HQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIH 539 (564)
T ss_pred HHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0011 122333455555 778888999999999999999999999983
No 146
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=77.05 E-value=43 Score=28.14 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
++...+ |+..+.-.++.|++++++++.+.++|++|
T Consensus 140 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi 174 (178)
T cd02002 140 AIAKAF-GVEAERVETPEELDEALREALAEGGPALI 174 (178)
T ss_pred HHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444 66666778899999999999998999988
No 147
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=76.93 E-value=16 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.5
Q ss_pred HHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 134 EAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 134 ~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.++.+.. |+......+..|++.+++++.+.++|++|
T Consensus 129 ~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i 164 (168)
T cd00568 129 AALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI 164 (168)
T ss_pred HHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 3455554 77777788899999999999999999988
No 148
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=76.89 E-value=3.6 Score=41.05 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=92.1
Q ss_pred hHHHHHHH-HHhcC-CCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPS-QLLSS-QGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~-~~~~~-~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
+.++=|.+ +.+-+ +.++.+-+|-..+ +-+....+ |+ |++-. -+|.|+.-.|=|-|.. |.-.++. ||+.
T Consensus 5 tvG~YL~~RL~qlgi~~iFGVPGDyNL~-----lLD~i~~~-~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvT-TfGV 76 (557)
T COG3961 5 TVGDYLFDRLAQLGIKSIFGVPGDYNLS-----LLDKIYSV-PGLRWVGN-ANELNAAYAADGYARLNGISALVT-TFGV 76 (557)
T ss_pred eHHHHHHHHHHhcCCceeeeCCCcccHH-----HHHHhhcC-CCceeecc-cchhhhhhhhcchhhhcCceEEEE-eccc
Confidence 44444444 44433 3456666664421 22333344 33 56655 4999999999999965 8889999 9999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-CCC-CCCCChh--HHHHHcCCC-C----cEEEeeC--CHHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-GHG-ALYHSQS--PEAYFAHTP-G----IKVVIPR--GPYK 153 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g~g-~th~~~~--d~~~~~~ip-~----~~v~~P~--~~~e 153 (325)
.-.-|++-|--+-+ .+.|+ . .++..|.-.+ ..+ -.||..- |...|..|. + -..+.|. -+.|
T Consensus 77 GELSA~NGIAGSYA-E~vpV---v----hIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~e 148 (557)
T COG3961 77 GELSALNGIAGSYA-EHVPV---V----HIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPRE 148 (557)
T ss_pred chhhhhcccchhhh-hcCCE---E----EEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHH
Confidence 87778776654333 22333 1 1222333222 122 3588654 333333321 1 1223343 3789
Q ss_pred HHHHHHHhHhCCCcEEEeccccccccc
Q psy8699 154 AKGLLLSCIKDKDPCIFFEPKVLYRAA 180 (325)
Q Consensus 154 ~~~~~~~a~~~~~Pv~i~~~~~l~~~~ 180 (325)
...+++.++..++|+||..|..+.+.+
T Consensus 149 IDrvi~~~~~~~RPvYI~lP~dva~~~ 175 (557)
T COG3961 149 IDRVIRTALKQRRPVYIGLPADVADLP 175 (557)
T ss_pred HHHHHHHHHHhcCCeEEEcchHHhcCc
Confidence 999999999999999999887655543
No 149
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=76.77 E-value=12 Score=36.29 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=60.9
Q ss_pred eEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc---cCcEEEEecCCcCCCh--H
Q psy8699 197 DILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK---TGRVIIAHEAPLTSGF--G 271 (325)
Q Consensus 197 ~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~---~~~vivvEe~~~~ggl--g 271 (325)
.++.+|.+++++..|.--+.-.+-++.. |.++.+++..+=.|+|.+.+.+.+++ .+.|.++...+++|=+ -
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~----g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl 150 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERY----GAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPL 150 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHh----CCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcH
Confidence 3456788999999999888766655543 89999999999999999999999884 3567777777776644 3
Q ss_pred HHHHHHHHhh
Q psy8699 272 AELAASIQDK 281 (325)
Q Consensus 272 ~~v~~~l~e~ 281 (325)
.+|+..+.+.
T Consensus 151 ~~I~~~~k~~ 160 (383)
T COG0075 151 KEIAKAAKEH 160 (383)
T ss_pred HHHHHHHHHc
Confidence 4555555443
No 150
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=76.72 E-value=7.8 Score=29.69 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcCCChHHHHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~gglg~~v~ 275 (325)
..+++|++.| +....|.+|.+.|++. |++...+++..- |-..+.+.+.-. .+=..|+++.. ..||......
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~-~iGG~ddl~~ 86 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGE-FVGGCDIIME 86 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE-EEeChHHHHH
Confidence 4689999988 5788999999999998 999999988532 111122222111 12356888766 5688876543
No 151
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=75.79 E-value=35 Score=29.73 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=29.6
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
++.+++ |+......+++|++.+++++++.++|++|-
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 444454 677777799999999999999999999983
No 152
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=75.66 E-value=42 Score=31.44 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=30.1
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 138 AHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 138 ~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
...|-+....|+++.|+...++.|.+.++|.+|
T Consensus 174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I 206 (299)
T PRK11865 174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYI 206 (299)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 456778888999999999999999999999999
No 153
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=75.66 E-value=37 Score=39.41 Aligned_cols=148 Identities=9% Similarity=-0.046 Sum_probs=83.4
Q ss_pred hHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHh--CCC-ceeechhhHHHHHHHHHHHhccCCeE-EEEeccc
Q psy8699 9 GFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKY--GKH-RVFNTPLSEQGIVGFGIGLAVSGATA-IAEIQFA 83 (325)
Q Consensus 9 ~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~--~p~-r~~~~gIaE~~~v~~a~GlA~~G~~p-~~~it~~ 83 (325)
.+.++|.+. .+.+=+.++..+--. ...|.+.+ .++ +++.+ ..|++++-+|-|.|..--+| ++..|.+
T Consensus 302 ~~a~~lv~~L~~~GV~~vFg~PG~~-------~~pL~dAl~~~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsG 373 (1655)
T PLN02980 302 VWASLIIEECTRLGLTYFCVAPGSR-------SSPLAIAASNHPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSG 373 (1655)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-------CHHHHHHHHhCCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCc
Confidence 467777774 455555555544221 22333322 022 45544 79999999999999885555 4444777
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CCCCCCChhHHHHHcCCCCcEEE--eeCCH-------H
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HGALYHSQSPEAYFAHTPGIKVV--IPRGP-------Y 152 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g~th~~~~d~~~~~~ip~~~v~--~P~~~-------~ 152 (325)
+.+...+--+. ++...+.| +++.+..-... +-+.+|.+++.++++.+-.+..- .|.+. .
T Consensus 374 PG~tN~l~av~-eA~~d~vP---------lLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~ 443 (1655)
T PLN02980 374 TAVSNLLPAVV-EASQDFVP---------LLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLT 443 (1655)
T ss_pred HHHHHHHHHHH-HHhhcCCC---------EEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHH
Confidence 87766666664 34422222 22222111111 22347777788888887654444 34441 3
Q ss_pred HHHHHHHHhHhC-CCcEEEeccc
Q psy8699 153 KAKGLLLSCIKD-KDPCIFFEPK 174 (325)
Q Consensus 153 e~~~~~~~a~~~-~~Pv~i~~~~ 174 (325)
.+..+++.|... .+||+|-.|.
T Consensus 444 ~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 444 TLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred HHHHHHHHHhCCCCCCEEEECcc
Confidence 344444445443 6899998884
No 154
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=75.56 E-value=8.6 Score=32.42 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=43.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEec
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
++||+-|.......++++.|++. |+.+=.|-+. ..+.+.|.....+.++|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~-gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRA-GIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHC-CcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 56777787777888999999988 8776555554 5789999998888888888864
No 155
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=74.16 E-value=33 Score=34.78 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.+|++.+- +--.+++.|.|++++. -++++++ ..+ |++. ...|. .+...+++... +++-. .+..
T Consensus 402 p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~-~GDG~f~~~-~~eL~-ta~~~~l~~~~------vv~NN-~~~~~ 471 (558)
T TIGR00118 402 PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICI-TGDGSFQMN-LQELS-TAVQYDIPVKI------LILNN-RYLGM 471 (558)
T ss_pred CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEE-EcchHHhcc-HHHHH-HHHHhCCCeEE------EEEeC-CchHH
Confidence 678887642 2233567888877773 3555563 566 4443 33343 46655555321 22221 1111
Q ss_pred ---------CC--CCCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ---------GH--GALYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ---------g~--g~th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+. ..++. ..-|. .+...+ |+.-+.-.+.+|++.+++++++.++|++|
T Consensus 472 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 531 (558)
T TIGR00118 472 VRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEKPEELDEKLKEALSSNEPVLL 531 (558)
T ss_pred HHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 00 01121 12233 445555 66777888899999999999999999999
No 156
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=74.02 E-value=18 Score=25.50 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~~v~~~ 277 (325)
+++|++. +....|.+|.+.|++. |+....+++..- + ..+.+.+.... +=.+|+++.. ..||.. ++.++
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~-~igg~~-~l~~~ 70 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQEN-GISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGE-LIGGSD-DLEKY 70 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHc-CCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCE-EEeCHH-HHHHH
Confidence 3555555 7788899999999987 999999987642 2 33334332222 2256788766 457753 44443
No 157
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=73.58 E-value=43 Score=26.50 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=64.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC--HHHHHHHHhc---cCcEEEEecCCcCCChHHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD--RETVFQSARK---TGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d--~~~l~~~~~~---~~~vivvEe~~~~gglg~~v~~~l 278 (325)
+++|++.|.......++++.+-.+ .-++..+++..=..++ .+.+.+.+++ .+.++++=+= .||--..++..+
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~-~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl--~GGSp~n~~~~~ 78 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGE-QENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDL--FGGSPNNAAARL 78 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeC--CCCCHHHHHHHH
Confidence 578999999999999999988544 3466667665432221 1345555554 3556666553 355555555554
Q ss_pred HhhccccCCCCeEEEcccCCCCc-ccc-cc-cCCCCHHHHHHHHHHH
Q psy8699 279 QDKCFLSLEAPIRRVTGYDTPFP-HIF-EP-FYIPDKWRCLEAVKQI 322 (325)
Q Consensus 279 ~e~~~~~~~~~v~~~~g~~~~~~-~~~-~~-~~l~~~~~I~~~i~~~ 322 (325)
... ..++..++|.+-|.- +++ .. .+. +.+.+++.+.+.
T Consensus 79 ~~~-----~~~~~visG~nlpmlle~~~~~~~~~-~~~e~~~~~~~~ 119 (122)
T cd00006 79 SME-----HPPVEVIAGVNLPMLLEAARARELGL-SLDELVENALEA 119 (122)
T ss_pred Hhc-----CCCEEEEEccCHHHHHHHHHccccCC-CHHHHHHHHHHh
Confidence 432 134556777765532 222 22 235 788888777653
No 158
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=73.50 E-value=11 Score=30.78 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccc-cCC-------------CHHHHHHHHhccCcEEEEecCCcCCChHHHHHH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSI-LPW-------------DRETVFQSARKTGRVIIAHEAPLTSGFGAELAA 276 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l-~P~-------------d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~ 276 (325)
|++...+..+++.+++. |++++++++... .|+ +.+.+.+.++..+.+|++=.. +.|+....+..
T Consensus 14 ~~t~~l~~~~~~~l~~~-g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~-y~~~~s~~lK~ 91 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEA-GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV-YNGSVSGQLKN 91 (152)
T ss_dssp SHHHHHHHHHHHHHHHT-TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE-BTTBE-HHHHH
T ss_pred CHHHHHHHHHHHHHHHc-CCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE-EcCcCChhhhH
Confidence 44556677777888887 999999999986 222 224566777788887777665 56888877776
Q ss_pred HHH
Q psy8699 277 SIQ 279 (325)
Q Consensus 277 ~l~ 279 (325)
++.
T Consensus 92 ~lD 94 (152)
T PF03358_consen 92 FLD 94 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 159
>PRK08617 acetolactate synthase; Reviewed
Probab=73.33 E-value=39 Score=34.26 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=63.3
Q ss_pred CCceeechhhHHHHHH----HHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC
Q psy8699 49 KHRVFNTPLSEQGIVG----FGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV 122 (325)
Q Consensus 49 p~r~~~~gIaE~~~v~----~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 122 (325)
|.+++..+ -.+.+| .|+|++++. -++++++ .++.. +.....|. .+...+++... ++..-.+..
T Consensus 404 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i-~GDGsf~m~~~eL~-Ta~~~~lpv~~-------vV~NN~~~~ 472 (552)
T PRK08617 404 PRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSV-SGDGGFLFSAMELE-TAVRLKLNIVH-------IIWNDGHYN 472 (552)
T ss_pred CCeEEecC--ccccccccccHHHhhHhhcCCCcEEEE-EechHHhhhHHHHH-HHHHhCCCeEE-------EEEECCccc
Confidence 66776542 123445 788887663 4666664 67742 33344443 46666665421 111111111
Q ss_pred ----------C-C-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 ----------G-H-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 ----------g-~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+ . +...+..+..++.+.+ |+.-+...++.|+...++++++.++|.+|-
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 473 MVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred hHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 0 0 1011122233444444 778888999999999999999989999993
No 160
>PRK08322 acetolactate synthase; Reviewed
Probab=72.63 E-value=41 Score=33.97 Aligned_cols=114 Identities=9% Similarity=-0.016 Sum_probs=61.2
Q ss_pred CCceeec-hhhHH-HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccC-ccC-
Q psy8699 49 KHRVFNT-PLSEQ-GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAV- 122 (325)
Q Consensus 49 p~r~~~~-gIaE~-~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~- 122 (325)
|.+|+.. |..=. ..++.|+|++++. -++++++ .++.. +.....|. .+...+++.. . +++-..+ |..
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i-~GDGsf~m~~~eL~-Ta~~~~lpv~---i---iV~NN~~~g~~~ 467 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAV-CGDGGFMMNSQELE-TAVRLGLPLV---V---LILNDNAYGMIR 467 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEE-EcchhHhccHHHHH-HHHHhCCCeE---E---EEEeCCCcchHH
Confidence 5676643 22111 3556788887763 4666664 56642 33333343 3444444432 1 2222111 100
Q ss_pred -------C--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 -------G--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 -------g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+ .+...+..+..++.+.+ |+.-+...+++|++..++++++.++|.+|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (547)
T PRK08322 468 WKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVID 524 (547)
T ss_pred HHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01111222223344444 777888899999999999999999999983
No 161
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=72.62 E-value=31 Score=29.30 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=25.0
Q ss_pred HHHcC--CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 135 AYFAH--TPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 135 ~~~~~--ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
++.++ .+...|-.|.+-+++.+.++.+++.++|.+|
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI 172 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVI 172 (178)
T ss_pred HHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEE
Confidence 34444 3445555556666666889999988999988
No 162
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=72.55 E-value=35 Score=34.58 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=63.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC-C-
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-G- 123 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g- 123 (325)
|.+|+..+. +=-.++..|+|++++.-+++++| .++.. +.....|. .++..+++... +++-. .+.. +
T Consensus 407 p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i-~GDGsf~m~~~EL~-Ta~r~~l~v~~------vV~NN-~~~~~~~ 477 (554)
T TIGR03254 407 PRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVAL-EGDSAFGFSGMEVE-TICRYNLPVCV------VIFNN-GGIYRGD 477 (554)
T ss_pred CCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEE-EcCchhcccHHHHH-HHHHcCCCEEE------EEEeC-hhhhhhh
Confidence 677876542 11134567777777755777775 67743 33333454 56666665421 22221 1210 0
Q ss_pred ----CCC----CC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 124 ----HGA----LY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 124 ----~g~----th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.+. +. ...+..++.+++ |..-+.-.+.+|+...++++++.++|++|
T Consensus 478 ~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 533 (554)
T TIGR03254 478 DVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPDELKAALNEALASGKPTLI 533 (554)
T ss_pred hhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 010 11 112223445555 66667779999999999999998999998
No 163
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=72.29 E-value=21 Score=25.86 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=45.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
+..+++|++. +....|.+|.+.|++. |++...+++..- -+.+.+.+... .+=.+++++.. ..||+. +|.++|
T Consensus 6 ~~~~V~ly~~-~~Cp~C~~ak~~L~~~-gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g~-~igG~~-~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFTK-PGCPFCAKAKATLKEK-GYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGGK-LIGGSD-ELEAYL 78 (79)
T ss_pred CCCCEEEEEC-CCCHhHHHHHHHHHHc-CCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECCE-EEcCHH-HHHHHh
Confidence 3456666655 8888999999999988 999999987642 12233333211 12246777554 568873 444443
No 164
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=72.28 E-value=70 Score=32.32 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=82.9
Q ss_pred hHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHh--CCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 9 GFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKY--GKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 9 ~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~--~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
+..++|.+.+ +.+=+.++.-+-.. ...|.+.+ .++ +|+.+ -.|++++.+|-|-|.. | +.++..|..
T Consensus 2 t~~~~l~~~L~~~Gv~~vFG~pG~~-------~~~l~dal~~~~~i~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~G 72 (539)
T TIGR03393 2 TVGDYLLDRLTDIGIDHLFGVPGDY-------NLQFLDHVIDSPDICWVGC-ANELNAAYAADGYARCKG-AAALLTTFG 72 (539)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCc-------hHHHHHHHhhCCCCcEecc-CCcccHHHHhhhhhhhcC-ceEEEEecC
Confidence 4567788744 44445444333111 22333322 023 45555 6999999999999977 6 677665889
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC--CC-CCCCC------hhHHHHHcCCCCcE-EEeeCC-HH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG--HG-ALYHS------QSPEAYFAHTPGIK-VVIPRG-PY 152 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g--~g-~th~~------~~d~~~~~~ip~~~-v~~P~~-~~ 152 (325)
+.+..++--+-+ +-..+.|. +++.+...... .+ -.||. |+...+++.+--+. +..|.+ +.
T Consensus 73 PG~~n~~~gla~-A~~d~~Pv--------l~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~ 143 (539)
T TIGR03393 73 VGELSAINGIAG-SYAEHLPV--------IHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATA 143 (539)
T ss_pred ccHHHHhhHHHH-HhhccCCE--------EEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEeChhhhHH
Confidence 987666655543 33222222 22221111100 01 11111 11134444432111 224556 67
Q ss_pred HHHHHHHHhHhCCCcEEEecccccccc
Q psy8699 153 KAKGLLLSCIKDKDPCIFFEPKVLYRA 179 (325)
Q Consensus 153 e~~~~~~~a~~~~~Pv~i~~~~~l~~~ 179 (325)
++.++++.|+..++||+|-.|..+...
T Consensus 144 ~i~~a~~~A~~~~gPv~l~iP~Dv~~~ 170 (539)
T TIGR03393 144 EIDRVITTALRERRPGYLMLPVDVAAK 170 (539)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCC
Confidence 888888888888899999998766443
No 165
>PRK05858 hypothetical protein; Provisional
Probab=71.52 E-value=23 Score=35.80 Aligned_cols=113 Identities=7% Similarity=-0.069 Sum_probs=63.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+. +=-..++.|+|++++ .-|+++++ .++.. +.....|. .+...++|... +++-. .+..
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i-~GDG~f~~~~~eL~-Ta~~~~lpi~i------vV~NN-~~y~~~ 467 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLL-QGDGAFGFSLMDVD-TLVRHNLPVVS------VIGNN-GIWGLE 467 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEE-EcCchhcCcHHHHH-HHHHcCCCEEE------EEEeC-CchhhH
Confidence 678887643 111244566666655 35677774 67743 33334443 45555565421 22221 1110
Q ss_pred C------CC----CCC-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 G------HG----ALY-HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 g------~g----~th-~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
. .+ ... ...+..++.+.+ |..-....+++|+..+++++++.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (542)
T PRK05858 468 KHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVN 526 (542)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 0 00 000 112222344444 677888899999999999999999999993
No 166
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=71.21 E-value=45 Score=33.93 Aligned_cols=113 Identities=9% Similarity=-0.030 Sum_probs=64.5
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..++.|.|++++. -++++++ .++.. +.....|. .+...+++... +++-. .+..
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~eL~-Ta~~~~l~i~~------vV~NN-~~y~~i 474 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDI-AGDGSFQMNSQELA-TAVQNDIPVIV------AILNN-GYLGMV 474 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEE-EeCchhhccHHHHH-HHHHcCCCeEE------EEEEC-CccHHH
Confidence 678887531 2234667788888763 4667774 67742 33333343 45555554321 22221 1111
Q ss_pred --------CC--CCCC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 --------GH--GALY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 --------g~--g~th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+. ..+. +..+..++.+.+ |+.-+.-.+..|+...+++++..++|.+|-
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~lie 534 (561)
T PRK06048 475 RQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVID 534 (561)
T ss_pred HHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 0010 112223444445 677788899999999999999999999993
No 167
>PRK06163 hypothetical protein; Provisional
Probab=70.80 E-value=73 Score=27.90 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=75.1
Q ss_pred CCccchHHHHHHHHHhc--CCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeEEEEe
Q psy8699 4 QGYWTGFFQSSPSQLLS--SQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSG-ATAIAEI 80 (325)
Q Consensus 4 ~~~~~~~~~a~~~~~~~--~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G-~~p~~~i 80 (325)
.+..++-.+++.++.+. ++++++ .|.|.. . ...+..++.|.+|+.+| +=-..+..|.|++++. -++++++
T Consensus 9 ~~~~~~~~~~i~~l~~~l~~~~~iv--~D~G~~-~---~~~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i 81 (202)
T PRK06163 9 NAKVMNRFDLTCRLVAKLKDEEAVI--GGIGNT-N---FDLWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIAL 81 (202)
T ss_pred CCCCcCHHHHHHHHHHhcCCCCEEE--ECCCcc-H---HHHHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEE
Confidence 34455555666554332 234433 466521 0 11111122266777543 2223445778877663 5677775
Q ss_pred cccccH-HHHHHHHHHHHhhc-ccccCCceeccceEEeccCcc--CCC--CCCCCChhHHHHHcCCCCcE-EEeeCCHHH
Q psy8699 81 QFADYI-FPAFDQIVNEAAKY-RYRSGNQFSCGNLTIRAPCMA--VGH--GALYHSQSPEAYFAHTPGIK-VVIPRGPYK 153 (325)
Q Consensus 81 t~~~F~-~ra~dqi~~~~~~~-~~~~~~~~~~~~~v~~~~~g~--~g~--g~th~~~~d~~~~~~ip~~~-v~~P~~~~e 153 (325)
.++.. +-....|. .+... +++. . +++..-.+. .+. ....+..+..++.+++ |+. -+...+.+|
T Consensus 82 -~GDG~f~m~~~eL~-Ta~~~~~lpi---~----ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~e 151 (202)
T PRK06163 82 -EGDGSLLMQLGALG-TIAALAPKNL---T----IIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAH 151 (202)
T ss_pred -EcchHHHHHHHHHH-HHHHhcCCCe---E----EEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHH
Confidence 67753 33333343 23321 2222 1 122221111 111 1111122223455555 554 456789999
Q ss_pred HHHHHHHhHhCCCcEEEe
Q psy8699 154 AKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 154 ~~~~~~~a~~~~~Pv~i~ 171 (325)
+..+++++++.++|++|-
T Consensus 152 l~~al~~a~~~~~p~lIe 169 (202)
T PRK06163 152 FEALVDQALSGPGPSFIA 169 (202)
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 999999999999999983
No 168
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=70.47 E-value=7.9 Score=31.45 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcc--
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTG-- 295 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g-- 295 (325)
-+|++.|++. ||+..- ..+ ++..+. +...+.||++++.+. ..+....... ...++..+ +
T Consensus 44 ~~a~~~l~~~-Gid~~~--~~~--~l~~~~----~~~~DlIv~m~~~~~-----~~~~~~~p~~----~~~kv~~~-~~~ 104 (140)
T smart00226 44 PRAVEVLKEH-GIALSH--HAS--QLTSSD----FKNADLVLAMDHSHL-----RNICRLKPRV----SRAKVELF-GEY 104 (140)
T ss_pred HHHHHHHHHc-CcCccc--eec--cCCHHH----HHhCCEEEEeCHHHH-----HHHHHHcccc----ccceeEeH-hhh
Confidence 4566777777 998752 222 666553 456789999988642 2233222111 01233333 3
Q ss_pred -------cCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 296 -------YDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 296 -------~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
+++|+..-.+.|.- .-++|.++++++++
T Consensus 105 ~~~~~~dI~DP~~~~~~~f~~-~~~~I~~~i~~ll~ 139 (140)
T smart00226 105 VTGSHGDVDDPYYGGIDGFEQ-VYDELENALQEFLK 139 (140)
T ss_pred CcCCCCcCCCCCCCChHHHHH-HHHHHHHHHHHHHh
Confidence 66776654445555 66788888888765
No 169
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=69.74 E-value=10 Score=29.62 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
.+..+.+|.+.|++. |+++.++++.. .|++.+.|.+.++..+
T Consensus 5 ~C~t~rka~~~L~~~-gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 5 NCSTCRKALKWLEEN-GIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp T-HHHHHHHHHHHHT-T--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHc-CCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 567889999999998 99999999986 6888888888776654
No 170
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=69.15 E-value=47 Score=28.44 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=58.7
Q ss_pred CCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhccc-ccCCceeccceEEeccCccCCCC-
Q psy8699 49 KHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRY-RSGNQFSCGNLTIRAPCMAVGHG- 125 (325)
Q Consensus 49 p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~-~~~~~~~~~~~v~~~~~g~~g~g- 125 (325)
|.+++.+|-- -..++.|.|++++--+|++++ -++.. +.....+. .++..+. |. .. +++-. .+....+
T Consensus 35 ~~~~~~~gsm-G~~lpaAiGa~la~~~~Vv~i-~GDG~f~m~~~el~-ta~~~~~~pv---~~---vV~NN-~~yg~~~~ 104 (181)
T TIGR03846 35 PLNFYMLGSM-GLASSIGLGLALATDRTVIVI-DGDGSLLMNLGVLP-TIAAESPKNL---IL---VILDN-GAYGSTGN 104 (181)
T ss_pred CCCeeecccc-ccHHHHHHHHHHcCCCcEEEE-EcchHHHhhhhHHH-HHHHhCCCCe---EE---EEEeC-CccccccC
Confidence 6788764421 123457777776646777775 67743 33333333 3444332 32 11 22221 1111111
Q ss_pred -CCC--CChhHHHHHcCCCCcEEEe-eCCHHHHHHHHHHhHhCCCcEEEec
Q psy8699 126 -ALY--HSQSPEAYFAHTPGIKVVI-PRGPYKAKGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 126 -~th--~~~~d~~~~~~ip~~~v~~-P~~~~e~~~~~~~a~~~~~Pv~i~~ 172 (325)
.+. ...+..++.+++ |+.-.. ..+++|+...++ +++.++|.+|-.
T Consensus 105 q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~~~~p~li~v 153 (181)
T TIGR03846 105 QPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALAMKGPTFIHV 153 (181)
T ss_pred cCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHcCCCCEEEEE
Confidence 111 122223444444 454444 688999999997 888899999843
No 171
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=68.72 E-value=64 Score=32.62 Aligned_cols=113 Identities=7% Similarity=-0.014 Sum_probs=64.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..+..|+|++++ .-+++++| -++.. +.....|. .+...+++.. . +++-. .+..
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~~~~~eL~-ta~~~~l~v~---i---vV~NN-~~~~~~ 461 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICV-SGDGSFMMNVQELG-TIKRKQLPVK---I---VLLDN-QRLGMV 461 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEE-EccchhhccHHHHH-HHHHhCCCeE---E---EEEeC-CccHHH
Confidence 678886531 111236677888777 35777775 67742 33333343 4555555432 1 22222 1111
Q ss_pred C------CC----CC-C-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 G------HG----AL-Y-HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 g------~g----~t-h-~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
. .+ ++ . +..+...+.+++ |+.-+...+.+|+...++++++.++|.+|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 462 RQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01 11 1 122223344455 777888899999999999999999999993
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=68.64 E-value=13 Score=26.26 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=41.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc--cCcEEEEecCCcCCChHHH
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK--TGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~--~~~vivvEe~~~~gglg~~ 273 (325)
++|++. +....+.+|.+.|++. |+....+++..- |-..+.+.+.... +=.+|+++.. ..||+...
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~-~igg~~~~ 68 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKK-GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDV-HIGGCDDL 68 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHC-CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCE-EEeChHHH
Confidence 455554 6678899999999998 999999999764 1111223222221 2357888776 45887654
No 173
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=68.39 E-value=37 Score=34.60 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=63.8
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc-C--
Q psy8699 49 KHRVFNTPL-SEQ-GIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-V-- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~-~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~-- 122 (325)
|.++++.+- .=. ..++.|+|++++.-++++++ .++.. +.....|. .+...++|... +++-. .+. .
T Consensus 414 p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i-~GDG~f~m~~~EL~-Ta~r~~lpi~~------vV~NN-~~~~~~~ 484 (569)
T PRK09259 414 PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAI-EGDSAFGFSGMEVE-TICRYNLPVTV------VIFNN-GGIYRGD 484 (569)
T ss_pred CCceEeCCCCccccccHHHHHHHHhcCCCcEEEE-ecCccccccHHHHH-HHHHcCCCEEE------EEEeC-hhHHHHH
Confidence 677776542 111 25567788777755777774 66642 33333343 56665555421 22221 121 0
Q ss_pred -----C--C-CCCC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 -----G--H-GALY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 -----g--~-g~th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+ . .++. .+.+..++.+++ |+.-+.-.+..|+...++++++.++|++|-
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 485 DVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTTPDELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0111 122223344444 666777799999999999999999999983
No 174
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=68.18 E-value=91 Score=27.97 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=27.9
Q ss_pred HHHcCC--CCcEEEeeCCHHHHHHHHHHhHh-CCCcEEE
Q psy8699 135 AYFAHT--PGIKVVIPRGPYKAKGLLLSCIK-DKDPCIF 170 (325)
Q Consensus 135 ~~~~~i--p~~~v~~P~~~~e~~~~~~~a~~-~~~Pv~i 170 (325)
.+.+++ +.+....+.++.|++.+++++++ .++|++|
T Consensus 160 ~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI 198 (237)
T cd02018 160 LIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFI 198 (237)
T ss_pred HHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEE
Confidence 444443 44444458999999999999998 9999999
No 175
>PRK10853 putative reductase; Provisional
Probab=68.02 E-value=12 Score=29.85 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
..+..+++|.+.|++. |+.++++++.. .|++.+.|.+.+++.
T Consensus 8 ~~C~t~rkA~~~L~~~-~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 8 KNCDTIKKARRWLEAQ-GIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CCCHHHHHHHHHHHHc-CCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 3556789999999998 99999999987 789999988887654
No 176
>PRK10026 arsenate reductase; Provisional
Probab=67.74 E-value=16 Score=30.28 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
..+..+++|.+.|++. |+++.++++.. .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~-gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNS-GTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHC-CCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 5667899999999998 99999999988 7888998888887654
No 177
>PRK05899 transketolase; Reviewed
Probab=67.22 E-value=68 Score=33.20 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHcCCCCcEEEeeC--CHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 135 AYFAHTPGIKVVIPR--GPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~--~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
..++++ |+.++.-. |..++..+++.+.+.++|++|-..
T Consensus 207 ~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~ 246 (624)
T PRK05899 207 KRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAK 246 (624)
T ss_pred HHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 566666 88877766 899999999999888899999654
No 178
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=66.57 E-value=62 Score=25.51 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=59.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH--HHHHHHHhcc---CcEEEEecCCcCCChHHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR--ETVFQSARKT---GRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~--~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~l 278 (325)
+++|++.|......+++++.+--+ .-++..+++..=...+. +.+.+.+++. +.++++=+= .||--..++..+
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~-~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl--~GGSp~n~a~~~ 79 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGE-QNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDI--FGGSPYNAAARI 79 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCC-cCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeC--CCCCHHHHHHHH
Confidence 588999999999999999987533 33577777554322221 3344555543 567777663 366555555443
Q ss_pred HhhccccCCCCeEEEcccCCCCc-cc-ccccCCCCHHHHHH
Q psy8699 279 QDKCFLSLEAPIRRVTGYDTPFP-HI-FEPFYIPDKWRCLE 317 (325)
Q Consensus 279 ~e~~~~~~~~~v~~~~g~~~~~~-~~-~~~~~l~~~~~I~~ 317 (325)
..+ ..++.-++|.+-|.- ++ ..+... +.+.+++
T Consensus 80 ~~~-----~~~~~vIsG~NLpmlle~~~~~~~~-~~~el~~ 114 (116)
T TIGR00824 80 IVD-----KPHMDVIAGVNLPLLLETLMARDDL-SFDDLVA 114 (116)
T ss_pred Hhh-----cCCEEEEEecCHHHHHHHHHhccCC-CHHHHHh
Confidence 321 124555677764321 22 223334 5555544
No 179
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=66.45 E-value=38 Score=31.77 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcc-CCeEEEEeccccc--HHHHHHHHHHHHhhcccccCCceeccceEEec-cCccCCC--------C---
Q psy8699 61 GIVGFGIGLAVS-GATAIAEIQFADY--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAVGH--------G--- 125 (325)
Q Consensus 61 ~~v~~a~GlA~~-G~~p~~~it~~~F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~g~--------g--- 125 (325)
.++.+|.|++++ .-++++++ -++. +.-....|. .++..+.+... +++-. ..|..+. |
T Consensus 74 ~alpaAiGaklA~pd~~VV~i-~GDG~~~~mg~~eL~-tA~r~nl~i~v------IV~NN~~YG~t~gQ~s~t~~~g~~~ 145 (301)
T PRK05778 74 RAIAFATGAKLANPDLEVIVV-GGDGDLASIGGGHFI-HAGRRNIDITV------IVENNGIYGLTKGQASPTTPEGSKT 145 (301)
T ss_pred cHHHHHHHHHHHCCCCcEEEE-eCccHHHhccHHHHH-HHHHHCCCcEE------EEEeCchhhcccCcccCCcCCCccc
Confidence 456678887776 35677774 6664 335555665 46655554421 11111 1111110 0
Q ss_pred ------CCCCChhHHHHHcCCCCcEEE---eeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 126 ------ALYHSQSPEAYFAHTPGIKVV---IPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 126 ------~th~~~~d~~~~~~ip~~~v~---~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
......+...+..+. |..-+ ...++.|+..++++|++.++|++|
T Consensus 146 ~~~~~g~~~~~~d~~~lA~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalI 198 (301)
T PRK05778 146 KTAPYGNIEPPIDPCALALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFI 198 (301)
T ss_pred ccccCCCcCCCCCHHHHHHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEE
Confidence 000112222343443 44443 689999999999999999999998
No 180
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=66.38 E-value=20 Score=28.58 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=38.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
++|..+- .+..+.+|.+.|++. ||+..++++.. .|.+.+.|.+.++..+
T Consensus 3 itiy~~p-~C~t~rka~~~L~~~-gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNP-NCSTCRKALAWLEEH-GIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCC-CChHHHHHHHHHHHc-CCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 4555553 445899999999998 99999998876 6888888888777654
No 181
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=66.23 E-value=44 Score=31.00 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccC-CeEEEEecccccH--HHHHHHHHHHHhhcccccCCceeccceEEec-cCccCC-------C-C---
Q psy8699 61 GIVGFGIGLAVSG-ATAIAEIQFADYI--FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAVG-------H-G--- 125 (325)
Q Consensus 61 ~~v~~a~GlA~~G-~~p~~~it~~~F~--~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~g-------~-g--- 125 (325)
.++..|.|+++.. -++++++ .++.- .-.+..|. .++..+++...+ ++-. ..|..+ . |
T Consensus 64 ~alp~AiGaklA~pd~~VVai-~GDG~~~~iG~~eL~-tA~r~nl~i~~I------V~NN~~Yg~t~~Q~s~~t~~g~~~ 135 (280)
T PRK11869 64 RAIPAATAVKATNPELTVIAE-GGDGDMYAEGGNHLI-HAIRRNPDITVL------VHNNQVYGLTKGQASPTTLKGFKT 135 (280)
T ss_pred cHHHHHHHHHHHCCCCcEEEE-ECchHHhhCcHHHHH-HHHHhCcCcEEE------EEECHHHhhhcceecCCCCCCccc
Confidence 5677888887775 5778884 67754 33366665 466555554321 1111 001111 0 0
Q ss_pred -----CCCC-ChhHHHHHcC--CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 126 -----ALYH-SQSPEAYFAH--TPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 126 -----~th~-~~~d~~~~~~--ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+... ..+...+..+ .+.+....+.++.|++..++.|++.++|++|
T Consensus 136 ~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lI 188 (280)
T PRK11869 136 PTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKHKGLAIV 188 (280)
T ss_pred ccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0001 1122233333 3333333499999999999999999999999
No 182
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=66.15 E-value=73 Score=27.19 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=60.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG 123 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g 123 (325)
|.+++..+- +=-..++.|.|+++. .-++++++ .++.. +.....+. .+...+++... +++...+.. ..
T Consensus 40 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i-~GDG~f~~~~~el~-ta~~~~~p~~i------vV~nN~~~~~~~ 111 (183)
T cd02005 40 GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILL-VGDGSFQMTVQELS-TMIRYGLNPII------FLINNDGYTIER 111 (183)
T ss_pred CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEE-ECCchhhccHHHHH-HHHHhCCCCEE------EEEECCCcEEEE
Confidence 567777521 111244567777655 34666664 66632 33333454 45555554321 222221111 00
Q ss_pred --CCC--CCC---ChhHHHHHcCCC---CcEEEeeCCHHHHHHHHHHhHh-CCCcEEE
Q psy8699 124 --HGA--LYH---SQSPEAYFAHTP---GIKVVIPRGPYKAKGLLLSCIK-DKDPCIF 170 (325)
Q Consensus 124 --~g~--th~---~~~d~~~~~~ip---~~~v~~P~~~~e~~~~~~~a~~-~~~Pv~i 170 (325)
.+. .+. ..+...+....- ++......+..|+.++++++++ .++|++|
T Consensus 112 ~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~li 169 (183)
T cd02005 112 AIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLI 169 (183)
T ss_pred EeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 011 111 112223444442 3677778999999999999998 7999998
No 183
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=65.90 E-value=90 Score=29.63 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=50.5
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCC-cEEEEecccccCCCHHH-----HHHHHhccCcEEEEecCCcCCChHHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGV-SCEVIDLVSILPWDRET-----VFQSARKTGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi-~~~vi~~~~l~P~d~~~-----l~~~~~~~~~vivvEe~~~~gglg~~v~ 275 (325)
+=+|+++|- ...+..+|++.+++. |. ++.++++.+..|-|.+. +.++-.++...|=+=+|+. | +..-++
T Consensus 148 kPiIlSTGma~~~ei~~av~~~r~~-g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~-g-~~a~l~ 223 (347)
T COG2089 148 KPIILSTGMATIEEIEEAVAILREN-GNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL-G-ILAPLA 223 (347)
T ss_pred CCEEEEcccccHHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc-c-hhHHHH
Confidence 457889985 557899999999998 65 49999999999999874 3444445677777878853 4 433333
No 184
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=65.27 E-value=86 Score=31.96 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCceeech-hh-HHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccC-
Q psy8699 49 KHRVFNTP-LS-EQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAV- 122 (325)
Q Consensus 49 p~r~~~~g-Ia-E~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~- 122 (325)
|.+|+..+ .. =-..+..|.|++++ .-++++++ -++.. +.....|. .+...+++... +++-.. .|..
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i-~GDGsf~m~~~eL~-Ta~~~~lpv~i------vV~NN~~~g~i~ 469 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVAL-SGDGGFSMLMGDFL-SLVQLKLPVKI------VVFNNSVLGFVA 469 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEE-ecCcHHhccHHHHH-HHHHhCCCeEE------EEEeCCccccHH
Confidence 56777542 11 01357788888866 35677775 67743 33344443 46655555421 222211 1111
Q ss_pred ----CCCC----C-CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ----GHGA----L-YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ----g~g~----t-h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
..+. + -+..+...+..++ |+.-+...++.|+...++++++.++|.+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (574)
T PRK09124 470 MEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALV 525 (574)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0011 1 0111222333444 77778889999999999999999999999
No 185
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=65.13 E-value=45 Score=25.46 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-----ccCcEEEEecCCcCCChHHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-----KTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-----~~~~vivvEe~~~~gglg~~ 273 (325)
.+++|++. +..+.|.+|.+.|++. |++..++++..- | +...+.+.+. .+=..|++... ..||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~-~i~~~~vdid~~-~-~~~~~~~~l~~~tg~~tvP~Vfi~g~-~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTL-GVNPAVHEIDKE-P-AGKDIENALSRLGCSPAVPAVFVGGK-LVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHc-CCCCEEEEcCCC-c-cHHHHHHHHHHhcCCCCcCeEEECCE-EEcCHHHH
Confidence 56888887 7788999999999988 999999999852 2 2233334343 23367888776 56898664
No 186
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=64.90 E-value=56 Score=30.32 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcc-CCeEEEEeccccc--HHHHHHHHHHHHhhcccccCCceeccceEEec-cCccCCC--------C---
Q psy8699 61 GIVGFGIGLAVS-GATAIAEIQFADY--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAVGH--------G--- 125 (325)
Q Consensus 61 ~~v~~a~GlA~~-G~~p~~~it~~~F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~g~--------g--- 125 (325)
.++.+|.|++++ .-++++++ .++. ++-....+. .++..+++... +++-. ..|..+. |
T Consensus 73 ~alpaAiGaklA~Pd~~VV~i-~GDG~~f~mg~~eL~-tA~r~nl~i~v------IV~NN~~yGmt~~q~s~tt~~g~~~ 144 (286)
T PRK11867 73 RALAIATGLKLANPDLTVIVV-TGDGDALAIGGNHFI-HALRRNIDITY------ILFNNQIYGLTKGQYSPTSPVGFVT 144 (286)
T ss_pred cHHHHHHHHHHhCCCCcEEEE-eCccHHHhCCHHHHH-HHHHhCCCcEE------EEEeCHHHhhhcCccCCCCCCCccc
Confidence 456677887776 35667774 6776 355555555 45555554421 11111 1111110 0
Q ss_pred -CCCCC-----hhHHHHHcCCC--CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 126 -ALYHS-----QSPEAYFAHTP--GIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 126 -~th~~-----~~d~~~~~~ip--~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.+.++ .+..++..+.. .+......+++|+..+++.|++.++|++|
T Consensus 145 ~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lI 197 (286)
T PRK11867 145 KTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFV 197 (286)
T ss_pred ccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 00011 12233444442 23333578999999999999999999999
No 187
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=64.14 E-value=16 Score=37.46 Aligned_cols=107 Identities=10% Similarity=0.133 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcc-CCeEEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEecc----CccC--------CCC--
Q psy8699 61 GIVGFGIGLAVS-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP----CMAV--------GHG-- 125 (325)
Q Consensus 61 ~~v~~a~GlA~~-G~~p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~----~g~~--------g~g-- 125 (325)
+.+++|.|++.. ..++|..|-=++|..-.+..|+| +.+++... .. +++-.. .|.. +.|
T Consensus 432 ssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~n-AV~n~~~~---~~---vvLdN~~tAMTGgQp~pg~~~~~~g~~ 504 (640)
T COG4231 432 SSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALIN-AVYNKANI---LV---VVLDNRTTAMTGGQPHPGTGVAAEGTK 504 (640)
T ss_pred chhhhccccccccCCceEEEeccccccccCcHHHHH-HHhcCCCe---EE---EEEeccchhccCCCCCCCcccccCCCc
Confidence 557788888855 56666665556677666777875 44333322 11 111110 1110 111
Q ss_pred CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEeccc
Q psy8699 126 ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPK 174 (325)
Q Consensus 126 ~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~ 174 (325)
.+++.++.+.=...+--+.+..|.|-.++.+.++.+++..+|.+|...+
T Consensus 505 ~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak~ 553 (640)
T COG4231 505 STAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAKR 553 (640)
T ss_pred cceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEcC
Confidence 2344455443334455677888999999999999999999999997654
No 188
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.91 E-value=41 Score=24.48 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=37.9
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH-HhccCcEEEEecCC
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS-ARKTGRVIIAHEAP 265 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~-~~~~~~vivvEe~~ 265 (325)
++.|++.+. ....|++.++.|++. |+.+.+ +... +.+..+ +..+ ..+...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~-g~~v~~-d~~~-~~~~~~-~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDA-GIRVEV-DLRN-EKLGKK-IREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHC-CCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEECcch
Confidence 456777664 556899999999998 999976 3443 455444 3333 33456778887653
No 189
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=63.73 E-value=18 Score=28.37 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
+.+..+++|.+.|++. |+.+.++|+.. .|++.+.+.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~-~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEA-GIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHC-CCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 4567889999999998 99999999877 6888888888777654
No 190
>KOG1184|consensus
Probab=63.52 E-value=12 Score=37.39 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=86.4
Q ss_pred chHHHHHHH-HHhcC-CCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 8 TGFFQSSPS-QLLSS-QGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~-~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
+++++=|.+ +.+-+ +.++.+-+|-..+ +-++.++. |+ |++.. -+|.|+.-.|=|-|.. |+-.++. ||+
T Consensus 4 i~~G~YLf~RL~q~gvksvfgVPGDFNL~-----LLD~l~~~-~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~Vt-Tfg 75 (561)
T KOG1184|consen 4 ITLGEYLFRRLVQAGVKTVFGVPGDFNLS-----LLDKLYAV-PGLRWVGN-CNELNAAYAADGYARSKGIGACVT-TFG 75 (561)
T ss_pred eeHHHHHHHHHHHcCCceeEECCCcccHH-----HHHHhhhc-CCceeecc-cchhhhhhhhcchhhhcCceEEEE-Eec
Confidence 445555555 44433 4566667775431 44555555 44 44444 4899999999999977 8888888 999
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-CCC-CCCCCh--hHHH----HHcCCCCcEEEeeCCHHHHH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-GHG-ALYHSQ--SPEA----YFAHTPGIKVVIPRGPYKAK 155 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g~g-~th~~~--~d~~----~~~~ip~~~v~~P~~~~e~~ 155 (325)
..-.-|++-|--+-+ .+.|+ . .++..|..-. +-+ =-||-. .|.. ++..+- ....+-.|.+++-
T Consensus 76 VGeLSAlNGIAGsYA-E~vpV---i----hIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vs-c~~a~I~~~e~A~ 146 (561)
T KOG1184|consen 76 VGELSALNGIAGAYA-ENVPV---I----HIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVT-CYTAMINDIEDAP 146 (561)
T ss_pred cchhhhhcccchhhh-hcCCE---E----EEECCCCcccccccchheeecCCCchHHHHHHHHhhh-hHHhhhcCHhhhH
Confidence 987778776654333 23333 1 1122221111 112 247744 3443 333321 2233334555554
Q ss_pred H----HHHHhHhCCCcEEEecccccc
Q psy8699 156 G----LLLSCIKDKDPCIFFEPKVLY 177 (325)
Q Consensus 156 ~----~~~~a~~~~~Pv~i~~~~~l~ 177 (325)
+ +++.+++..+||||..|..+.
T Consensus 147 ~~ID~aI~~~~~~~rPVYi~iP~n~~ 172 (561)
T KOG1184|consen 147 EQIDKAIRTALKESKPVYIGVPANLA 172 (561)
T ss_pred HHHHHHHHHHHHhcCCeEEEeecccc
Confidence 4 555555579999998886543
No 191
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=63.37 E-value=36 Score=28.64 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=41.2
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhhcC--CcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 204 DVTLIGWGTQVH----VLREVAGLAKEQLG--VSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~~~~----~a~~A~~~L~~~~g--i~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
+++|+++|+... .-..+++.|++.++ -++++++..+.- ..+...+.+++++|+||..
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~----~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG----MELLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH----HHHHHHHhCCCEEEEEEec
Confidence 578999999773 56778888876423 358889888853 3344556788899999875
No 192
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=62.89 E-value=51 Score=33.89 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcc-CCeEEEEeccccc--HHHHHHHHHHHHhhcccccCCceeccceEEeccC-ccCCCCCC---------
Q psy8699 61 GIVGFGIGLAVS-GATAIAEIQFADY--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAVGHGAL--------- 127 (325)
Q Consensus 61 ~~v~~a~GlA~~-G~~p~~~it~~~F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~g~g~t--------- 127 (325)
..++.|.|++.. .-++++++ -++. +.-.+..|.+ +...+.+... +++-... |..+....
T Consensus 407 ~~~~~AiGa~~a~p~~~Vv~i-~GDG~f~~~g~~eL~t-av~~~~~i~~------vVlnN~~~g~~~~q~~~~~~~~~~~ 478 (595)
T TIGR03336 407 ASIGVASGLSKAGEKQRIVAF-IGDSTFFHTGIPGLIN-AVYNKANITV------VILDNRITAMTGHQPNPGTGVTGMG 478 (595)
T ss_pred chHHHHhhhhhcCCCCCEEEE-eccchhhhcCHHHHHH-HHHcCCCeEE------EEEcCcceeccCCCCCCCCCCCCCC
Confidence 445577777765 35777774 6774 3333556653 5544444321 1111111 11111000
Q ss_pred --CCChhHHHHHc--CCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 128 --YHSQSPEAYFA--HTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 128 --h~~~~d~~~~~--~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
.+..+..++.+ ..+...|..|.+.+|+..+++++++.++|.+|...
T Consensus 479 ~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v~ 528 (595)
T TIGR03336 479 EATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIAK 528 (595)
T ss_pred CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 01122233444 35677888888889999999999999999999543
No 193
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=62.75 E-value=20 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
+....+.+|.+.|++. |+...++++.. .|+..+.|.+.+++.+
T Consensus 7 ~~C~~crka~~~L~~~-~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEAR-GVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHc-CCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 4567889999999998 99999999987 6889999988887654
No 194
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=62.50 E-value=65 Score=32.81 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=63.1
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-S-EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-a-E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|++.|- . --..++.|.|++++. -++++++ .++.. +.....|. .++..++|... +++-. .+..
T Consensus 411 p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG~f~~~~~eL~-ta~~~~lpv~~------vV~NN-~~~~~i 481 (574)
T PRK06882 411 PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCV-TGDGSIQMNIQELS-TAKQYDIPVVI------VSLNN-RFLGMV 481 (574)
T ss_pred CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEE-EcchhhhccHHHHH-HHHHhCCCeEE------EEEEC-chhHHH
Confidence 678887542 2 223567788888763 3555563 56632 33344454 46665665421 12211 1110
Q ss_pred ---------CC-CCCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEe
Q psy8699 123 ---------GH-GALYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDPCIFF 171 (325)
Q Consensus 123 ---------g~-g~th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i~ 171 (325)
+. ...+. ...|. .+.+++ |+.-+.-.+.+|+..+++++++. ++|++|-
T Consensus 482 ~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 482 KQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDTPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred HHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 01110 11233 344444 66777889999999999999985 8899983
No 195
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=62.35 E-value=79 Score=25.21 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=47.2
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEecccccccccccCCCCCCcccC---CCceeEeeeCCcEEEEEechhHHHHHHH
Q psy8699 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELP---LDKADILVAGTDVTLIGWGTQVHVLREV 220 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~---~gk~~~~~~g~dv~ii~~G~~~~~a~~A 220 (325)
.|+.|.+.+|+.+++++|.+++.|+.++-...-... .....+..-+. +.+...+.+....+.+..|.......+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~--~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTG--QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSS--TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCccc--ccccCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 489999999999999999999999999543211000 00111111111 2222223445678888888888876654
Q ss_pred H
Q psy8699 221 A 221 (325)
Q Consensus 221 ~ 221 (325)
.
T Consensus 81 l 81 (139)
T PF01565_consen 81 L 81 (139)
T ss_dssp H
T ss_pred c
Confidence 4
No 196
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=62.33 E-value=13 Score=30.35 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcc--
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTG-- 295 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g-- 295 (325)
..|++.|++. |++.+ -..-++++... +...+.||++++... ..+. ...+ ....++..+ +
T Consensus 48 ~~a~~~l~~~-Gid~s---~h~s~~l~~~~----~~~aDlIi~m~~~~~-----~~~~----~~~~-~~~~~v~~~-~~~ 108 (141)
T cd00115 48 PRAIAVLAEH-GIDIS---GHRARQLTEDD----FDEFDLIITMDESNL-----AELL----EPPP-GGRAKVELL-GEY 108 (141)
T ss_pred HHHHHHHHHc-CCCcc---cCeeeeCCHHH----HHhCCEEEEECHHHH-----HHHH----hcCC-CCcceEEeH-hhh
Confidence 4456667776 88863 35556666543 456789999988642 1211 1110 011234444 5
Q ss_pred -----cCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 296 -----YDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 296 -----~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
+++|+..-.+.|.- ..++|.++++++++
T Consensus 109 ~~~~~i~DP~~~~~~~f~~-~~~~I~~~v~~l~~ 141 (141)
T cd00115 109 AGDREVPDPYYGSLEAFEE-VYDLIEEAIKALLK 141 (141)
T ss_pred CcCCCCCCCCCCChHHHHH-HHHHHHHHHHHHhC
Confidence 67777655555555 67788888887764
No 197
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=61.75 E-value=74 Score=27.53 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=45.4
Q ss_pred echhHHHHHHHHHHHHh-hcCCcEEEEecccccCCCH--------------HHHHHHHhccCcEEEEecCCcCCChHHHH
Q psy8699 210 WGTQVHVLREVAGLAKE-QLGVSCEVIDLVSILPWDR--------------ETVFQSARKTGRVIIAHEAPLTSGFGAEL 274 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~-~~gi~~~vi~~~~l~P~d~--------------~~l~~~~~~~~~vivvEe~~~~gglg~~v 274 (325)
+|++...|..+++.+++ . |.++++++++...|-+. .. .+.+..++.|++. .-.+.|++...+
T Consensus 12 ~G~T~~lA~~ia~g~~~~~-G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~g-sPty~g~~~~~l 88 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVA-GAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFG-TPTRFGNMAGQM 88 (200)
T ss_pred CCHHHHHHHHHHHHHhhcC-CcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEE-ecccCCCchHHH
Confidence 35566677777888877 7 99999999875433111 11 3445667765555 444688898888
Q ss_pred HHHHHhh
Q psy8699 275 AASIQDK 281 (325)
Q Consensus 275 ~~~l~e~ 281 (325)
..++...
T Consensus 89 k~fld~~ 95 (200)
T PRK03767 89 RNFLDQT 95 (200)
T ss_pred HHHHHHh
Confidence 8887653
No 198
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=61.30 E-value=1e+02 Score=31.53 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=62.1
Q ss_pred CCceeechhhHHH----HHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC
Q psy8699 49 KHRVFNTPLSEQG----IVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV 122 (325)
Q Consensus 49 p~r~~~~gIaE~~----~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 122 (325)
|.+|+..+ -.+ .++.|.|++++. -++++++ .++.. +.....|. .+...+++... +++-. .+..
T Consensus 420 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~eL~-Tavr~~lpvi~------vV~NN-~~yg 488 (579)
T TIGR03457 420 PRKFLAPM--SFGNCGYAFPTIIGAKIAAPDRPVVAY-AGDGAWGMSMNEIM-TAVRHDIPVTA------VVFRN-RQWG 488 (579)
T ss_pred CCeEEcCC--ccccccchHHHHHhhhhhCCCCcEEEE-EcchHHhccHHHHH-HHHHhCCCeEE------EEEEC-cchH
Confidence 67888643 223 444777777764 4677774 67742 33333443 56666665421 22221 1110
Q ss_pred --C------CC----CC-CCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEe
Q psy8699 123 --G------HG----AL-YHS-QSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK---DKDPCIFF 171 (325)
Q Consensus 123 --g------~g----~t-h~~-~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~---~~~Pv~i~ 171 (325)
. .+ ++ .+. .+..++...+ |..-+.-.+++|+...++.+++ .++|++|-
T Consensus 489 ~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 489 AEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 0 01 11 112 1223444445 6666777999999999999997 47899983
No 199
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=61.07 E-value=22 Score=28.08 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
..+..+++|.+.|++. |+++.++|+.. .|+..+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~-~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDK-GIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHC-CCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 4567889999999998 99999999987 6888998888877653
No 200
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=60.94 E-value=80 Score=32.20 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=62.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|++.|- +=-..+..|+|++++ .-+++++| .++.. +.....|. .+...+++... +++-. .+..
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~eL~-Ta~r~~lpv~i------vV~NN-~~y~~i 483 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACV-TGEGSIQMNIQELS-TCLQYGLPVKI------INLNN-GALGMV 483 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEE-EcchhhhccHHHHH-HHHHhCCCeEE------EEEeC-CccHHH
Confidence 678886531 111235567887766 35677775 67743 33334443 46655554421 22221 1111
Q ss_pred ---------CC-CCCC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q psy8699 123 ---------GH-GALY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDPCIF 170 (325)
Q Consensus 123 ---------g~-g~th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i 170 (325)
+. ..+. ...+..++..++ |+.-+...+..|+...++++++. ++|.+|
T Consensus 484 ~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lI 543 (574)
T PRK06466 484 RQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFI 543 (574)
T ss_pred HHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 00 0111 112222344445 67778889999999999999986 999998
No 201
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=60.84 E-value=23 Score=30.33 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHhCCCcEEEeccccccccccc----CCCCCCcccC--------CCceeEeeeCCcEEEEEechhHHHHH
Q psy8699 151 PYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVE----DVPEDYYELP--------LDKADILVAGTDVTLIGWGTQVHVLR 218 (325)
Q Consensus 151 ~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~----~~~~~~~~~~--------~gk~~~~~~g~dv~ii~~G~~~~~a~ 218 (325)
-+++.+++-+|+-.++-+||. -+..-.. .+... .+++ .++...+.+-.+|.|++-.+.-..+.
T Consensus 24 iedaARlLAQA~vgeG~IYi~----G~~Em~~v~~~Al~g~-E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~ 98 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYIY----GFGEMEAVEAEALYGA-EPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAV 98 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEEE----E-GGGGGGHHHHHCST-T--TTEEE--TT--------TT-EEEEEES-S--HHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEE----ecChHHHHHHHHHcCC-CCCchhhcCcccccccccccccceEEEEeCCCCCHHHH
Confidence 367888999999999999993 2222110 01100 1111 11122334445788899888888999
Q ss_pred HHHHHHHhhcCCcEEEEe
Q psy8699 219 EVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~ 236 (325)
+.++.|.++ |+.+-+|+
T Consensus 99 ~~a~~L~~~-gi~~v~Vs 115 (172)
T PF10740_consen 99 ALAKQLIEQ-GIPFVGVS 115 (172)
T ss_dssp HHHHHHHHH-T--EEEEE
T ss_pred HHHHHHHHC-CCCEEEEE
Confidence 999999999 99988887
No 202
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=60.72 E-value=36 Score=27.95 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=37.7
Q ss_pred EEEEEechhHH----HHHHHHHHHHhh--cCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 205 VTLIGWGTQVH----VLREVAGLAKEQ--LGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 205 v~ii~~G~~~~----~a~~A~~~L~~~--~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++|+++|+... .-..+++.|++. ..-.+++++..+.- ..+...+.+++++|+||--
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~----~~l~~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG----LELLPYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhcCCEEEEEEcc
Confidence 36788888762 456677777654 13468888888852 2334556678899999884
No 203
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=60.68 E-value=39 Score=34.66 Aligned_cols=113 Identities=9% Similarity=0.026 Sum_probs=62.9
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-S-EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-a-E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- . =-..++.|+|++++. -|++++| .++.. +.....|. .+...++|... ++..-.+..
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i-~GDG~f~m~~~EL~-Ta~r~~lpvv~-------iV~NN~~yg~i 478 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAL-SGDYDFQFMIEELA-VGAQHNIPYIH-------VLVNNAYLGLI 478 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEE-EcchHhhccHHHHH-HHHHhCCCeEE-------EEEeCCchHHH
Confidence 678876531 1 112455666766663 5677775 67742 33334443 56666665421 111111110
Q ss_pred C------CCC----C-C----------CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEe
Q psy8699 123 G------HGA----L-Y----------HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFF 171 (325)
Q Consensus 123 g------~g~----t-h----------~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~ 171 (325)
. .+. . . +..+..++.+++ |+.-..-.+++|+..+++++++ .++|++|-
T Consensus 479 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 479 RQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 000 0 0 012333455555 6777777999999999999995 68999993
No 204
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=60.35 E-value=95 Score=31.67 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccC-ccCC------CCC----C
Q psy8699 61 GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAVG------HGA----L 127 (325)
Q Consensus 61 ~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~g------~g~----t 127 (325)
.+++.|.|++++. -++++++ .++.. +.....|. .+...+++... +++-... |... .+. .
T Consensus 441 ~~l~~aiGa~la~~~~~vv~i-~GDGsf~~~~~el~-ta~~~~l~~~~------vv~NN~~~g~~~~~~~~~~~~~~~~~ 512 (578)
T PRK06112 441 WGVPMAIGAKVARPGAPVICL-VGDGGFAHVWAELE-TARRMGVPVTI------VVLNNGILGFQKHAETVKFGTHTDAC 512 (578)
T ss_pred cHHHHHHHHHhhCCCCcEEEE-EcchHHHhHHHHHH-HHHHhCCCeEE------EEEeCCccCCEEeccccccCCccccC
Confidence 5667888888763 5667774 67743 33344443 46665554421 2222111 1100 011 1
Q ss_pred C-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 128 Y-HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 128 h-~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+ ...+...+.+++ |+.-..-.+..|++..++++++.++|++|
T Consensus 513 ~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 555 (578)
T PRK06112 513 HFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLI 555 (578)
T ss_pred cCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 122223344444 66666778999999999999999999999
No 205
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=60.06 E-value=25 Score=28.48 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
.....+++|.+.|+++ |++.+++++.. .|++.+.|.+.+++.
T Consensus 9 p~Cst~RKA~~~L~~~-gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 9 PGCANNARQKAALKAS-GHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred CCCHHHHHHHHHHHHC-CCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 4567899999999998 99999999987 688898888877653
No 206
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=60.06 E-value=53 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=19.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEec
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~ 237 (325)
+++|+..|.. |.++.+.+++. |++.-+|+-
T Consensus 4 kvLIanrGei---a~r~~ra~r~~-Gi~tv~v~s 33 (110)
T PF00289_consen 4 KVLIANRGEI---AVRIIRALREL-GIETVAVNS 33 (110)
T ss_dssp EEEESS-HHH---HHHHHHHHHHT-TSEEEEEEE
T ss_pred EEEEECCCHH---HHHHHHHHHHh-CCcceeccC
Confidence 5777777776 55566666666 888766654
No 207
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=60.03 E-value=46 Score=34.07 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.+|++.+- +=-.+++.|.|++++. -++++++ -++ |+.. ...|. .+...+++.. . +++-. .+..
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i-~GDGsf~m~-~~eL~-Ta~~~~lpv~---~---vV~NN-~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAI-TGDGGFLMN-SQELA-TIAEYDIPVV---I---CIFDN-RTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEE-EcchHhhcc-HHHHH-HHHHhCCCeE---E---EEEeC-CchHH
Confidence 678887531 2223666888888763 4566664 566 4433 33343 4555555532 1 22222 1110
Q ss_pred ---------C--CCCCCC--ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ---------G--HGALYH--SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ---------g--~g~th~--~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+ ...++. ..+..++...+ |..-+.-.+++|++.+++++++.++|.+|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLL 538 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 011221 12333455555 77778889999999999999999999999
No 208
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=59.80 E-value=84 Score=32.12 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCceeechhhHHH----HHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccC-cc
Q psy8699 49 KHRVFNTPLSEQG----IVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MA 121 (325)
Q Consensus 49 p~r~~~~gIaE~~----~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~ 121 (325)
|.+|+..+- .+ .+..|.|++++ .-+++++| .++.. +.....| ..+...+++... +++-..+ |.
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i-~GDGsf~~~~~el-~Ta~~~~lpv~~------vV~NN~~~g~ 467 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISM-SGDGGLSMLLGEL-LTVKLYDLPVKV------VVFNNSTLGM 467 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEE-EcCchHhhhHHHH-HHHHHhCCCeEE------EEEECCcccc
Confidence 456665321 23 34477787766 24566664 56642 3334445 357766665431 1221111 11
Q ss_pred CC-----CCCCC-----CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 122 VG-----HGALY-----HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 122 ~g-----~g~th-----~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.. .+..+ +..+...+...+ |+.-..-.+++|++.+++++++.++|++|
T Consensus 468 i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 525 (578)
T PRK06546 468 VKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALV 525 (578)
T ss_pred HHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 11111 122222344444 55666678999999999999999999999
No 209
>PRK10638 glutaredoxin 3; Provisional
Probab=59.64 E-value=23 Score=25.88 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=41.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~~ 273 (325)
+++|.+. +....|.+|.+.|++. |+...++++..-... .+.+.+.-.. +=.+|+++.. ..||+.+.
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~-~igG~~~~ 69 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSK-GVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQ-HIGGCDDL 69 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHc-CCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCE-EEeCHHHH
Confidence 4556654 4567899999999998 999999988642111 1223332221 2256777654 66888543
No 210
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=59.57 E-value=1.2e+02 Score=28.71 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=47.6
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCc---EEEEecccccCCCHHH-----HHHHHhccCcEEEEecCCcCCChHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVS---CEVIDLVSILPWDRET-----VFQSARKTGRVIIAHEAPLTSGFGAEL 274 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~---~~vi~~~~l~P~d~~~-----l~~~~~~~~~vivvEe~~~~gglg~~v 274 (325)
+=+|+++|- ...+..+|++.+++. |-. +.++++.+-.|-+.+. +..+-+.++..|.+-+|. .|....+
T Consensus 134 kPvilStGmatl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt--~G~~~~~ 210 (329)
T TIGR03569 134 KPVILSTGMATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHT--LGIEAPI 210 (329)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCC--ccHHHHH
Confidence 347888884 667899999999887 764 8899999888877753 333233466555566664 3554444
Q ss_pred HHH
Q psy8699 275 AAS 277 (325)
Q Consensus 275 ~~~ 277 (325)
++.
T Consensus 211 aAv 213 (329)
T TIGR03569 211 AAV 213 (329)
T ss_pred HHH
Confidence 443
No 211
>PRK07586 hypothetical protein; Validated
Probab=59.54 E-value=1.5e+02 Score=29.64 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=61.6
Q ss_pred CCceeechhh-HHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC---
Q psy8699 49 KHRVFNTPLS-EQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--- 122 (325)
Q Consensus 49 p~r~~~~gIa-E~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--- 122 (325)
|.+|+..+-. =-..+..|.|++++ .-++++++ -++.. +.....|. .+...++|... +++-. .+..
T Consensus 376 ~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i-~GDGsf~m~~~EL~-Ta~~~~lpv~i------vV~NN-~~y~~~~ 446 (514)
T PRK07586 376 PHDWLTLTGGAIGQGLPLATGAAVACPDRKVLAL-QGDGSAMYTIQALW-TQARENLDVTT------VIFAN-RAYAILR 446 (514)
T ss_pred CCCEEccCCcccccHHHHHHHHHHhCCCCeEEEE-EechHHHhHHHHHH-HHHHcCCCCEE------EEEeC-chhHHHH
Confidence 6777754311 11234466677766 45677774 67753 44455554 46666666421 11111 1110
Q ss_pred ------CC---C---C----CCC-ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ------GH---G---A----LYH-SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ------g~---g---~----th~-~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+. + . ... ..+..++.+.+ |..-..-.++.|+..+++++++.++|.+|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 447 GELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 00 0 0 011 11222344444 55666668999999999999998999988
No 212
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=59.01 E-value=41 Score=24.54 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=44.9
Q ss_pred EEEEEechhHHHHHHHHHHHHh-----hcCCcEEEEecccccCCCHHHHHHHHhc---cCcEEEEecCCcCCChHHHHHH
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKE-----QLGVSCEVIDLVSILPWDRETVFQSARK---TGRVIIAHEAPLTSGFGAELAA 276 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~-----~~gi~~~vi~~~~l~P~d~~~l~~~~~~---~~~vivvEe~~~~gglg~~v~~ 276 (325)
+++++. +....|.+|.+.|++ . |+....+|+.. .+...+.+.+.... +=..|+++.. ..||+.. +.+
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~-~igg~~~-~~~ 77 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERD-DFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQK-HIGGCTD-FEA 77 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhccccc-CCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCE-EEcCHHH-HHH
Confidence 445544 556778888888877 7 99999999985 23334455554432 2257778765 5688754 444
Q ss_pred HHHh
Q psy8699 277 SIQD 280 (325)
Q Consensus 277 ~l~e 280 (325)
++.+
T Consensus 78 ~~~~ 81 (85)
T PRK11200 78 YVKE 81 (85)
T ss_pred HHHH
Confidence 4443
No 213
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=58.99 E-value=1.3e+02 Score=30.28 Aligned_cols=112 Identities=11% Similarity=0.057 Sum_probs=61.4
Q ss_pred CCceeechh-hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--C
Q psy8699 49 KHRVFNTPL-SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--G 123 (325)
Q Consensus 49 p~r~~~~gI-aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g 123 (325)
|.+|+..+. +=-..++.|.|++++. -++++++ .++.. +.....|. .+...++|.. +++..-++.. .
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG~f~~~~~eL~-ta~~~~lp~~-------~vv~NN~~~~~~~ 468 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGL-IGDGSAMYSIQALW-SAAQLKLPVT-------FVILNNGRYGALR 468 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEE-EeCchHhhhHHHHH-HHHHhCCCcE-------EEEEeChHHHHHH
Confidence 567875311 1113556788887663 3455553 56632 33344443 4666566542 1122111111 0
Q ss_pred -----CC-CCC-----CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 124 -----HG-ALY-----HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 124 -----~g-~th-----~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.+ +.+ +..+...+.+.+ |+..+.-.+..|+..+++.+.+.++|++|
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 525 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLV 525 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 011 112223344445 77777888999999999999999999998
No 214
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=58.83 E-value=22 Score=34.49 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=49.1
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHH
Q psy8699 204 DVTLI---GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 204 dv~ii---~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~ 275 (325)
+++|+ .||++-..|...++.|.+. |+++.++++..- |.+.|.+.+.+++. +++=.-+..++.--.+.
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~-gv~v~~~~~~~~---~~~eI~~~i~~a~~-~vvGsPT~~~~~~p~i~ 317 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKE-GVDVEVINLEDA---DPSEIVEEILDAKG-LVVGSPTINGGAHPPIQ 317 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhc-CCceEEEEcccC---CHHHHHHHHhhcce-EEEecCcccCCCCchHH
Confidence 46665 5788888899999999998 999999999986 77888887777765 44444444455433333
No 215
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=58.69 E-value=45 Score=26.80 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=43.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEec
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHE 263 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe 263 (325)
+++.+++-.....+.+.+-..+.++--++++|.++|.--+|...+.+.+++ .+.|+++--
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC 61 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGC 61 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCC
Confidence 355666656666666666655554455799999999999999998888765 788888643
No 216
>PLN02470 acetolactate synthase
Probab=58.50 E-value=98 Score=31.67 Aligned_cols=113 Identities=8% Similarity=-0.014 Sum_probs=62.7
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..++.|.|++++. -++++++ -++.. +.....|. .+...+++.. +++..-.+..
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~eL~-Ta~~~~l~v~-------ivV~NN~~yg~i 486 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDI-DGDGSFIMNIQELA-TIHVENLPVK-------IMVLNNQHLGMV 486 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEE-EccchhhccHHHHH-HHHHhCCCeE-------EEEEeCCcchHH
Confidence 677876420 1123667778877773 4566664 56642 33333443 4555555432 1122111110
Q ss_pred --------C--CCCCC---------CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 --------G--HGALY---------HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 --------g--~g~th---------~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+ ...++ +..+..++.+++ |..-..-.++.|+..++++++..++|.+|-
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 553 (585)
T PLN02470 487 VQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLD 553 (585)
T ss_pred HHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00011 112223455555 677777899999999999999999999983
No 217
>PRK06154 hypothetical protein; Provisional
Probab=57.69 E-value=1.5e+02 Score=30.13 Aligned_cols=114 Identities=11% Similarity=-0.008 Sum_probs=64.1
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEec-cCccCC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAVG 123 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~g 123 (325)
|.+|+..+- +=-..++.|+|++++ .-++++++ .++.. +.....|. .+...++|... +|+-. ..|...
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i-~GDG~f~m~~~EL~-Ta~r~~lpi~~------vV~NN~~yg~~~ 492 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINL-WGDAAFGMTGMDFE-TAVRERIPILT------ILLNNFSMGGYD 492 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchHHhccHHHHH-HHHHhCCCeEE------EEEECCccceee
Confidence 678887531 111355677777776 35777774 67743 33334443 56666666532 11111 111000
Q ss_pred ---------CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEe
Q psy8699 124 ---------HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK---DKDPCIFF 171 (325)
Q Consensus 124 ---------~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~---~~~Pv~i~ 171 (325)
..++....+..++..++ |+.-+.-.+.+|+..+++.+++ .++|.+|-
T Consensus 493 ~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 493 KVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred hhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 01111112222344555 7777778999999999999996 58899983
No 218
>KOG2862|consensus
Probab=57.64 E-value=67 Score=30.39 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=49.2
Q ss_pred eEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc--CcEEEEecCCcCCCh
Q psy8699 197 DILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT--GRVIIAHEAPLTSGF 270 (325)
Q Consensus 197 ~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~--~~vivvEe~~~~ggl 270 (325)
+++.+|..+.++++|.....+-+ .++.- |.+|.++-...=.-.+.|.|.+.+..+ +-+.++..++.+|=+
T Consensus 87 N~lePgd~vLv~~~G~wg~ra~D---~~~r~-ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~ 158 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQRAAD---CARRY-GAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVL 158 (385)
T ss_pred hhcCCCCeEEEEEechHHHHHHH---HHHhh-CceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcccccc
Confidence 35668889999999998877554 44443 999999977666778888888877654 345555556555443
No 219
>PRK07524 hypothetical protein; Provisional
Probab=57.63 E-value=80 Score=31.85 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=61.5
Q ss_pred CCceee-ch-h-hHHHHHHHHHHHhcc-CCeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEec-cCcc
Q psy8699 49 KHRVFN-TP-L-SEQGIVGFGIGLAVS-GATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMA 121 (325)
Q Consensus 49 p~r~~~-~g-I-aE~~~v~~a~GlA~~-G~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~ 121 (325)
|.+|++ .+ . +=-..++.|.|++++ .-++++++ .++ |+... ..|. .+...++|... +++-. ..|.
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~-~el~-ta~~~~lpi~~------vV~NN~~~g~ 466 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCL-VGDGGLQFTL-PELA-SAVEADLPLIV------LLWNNDGYGE 466 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhH-HHHH-HHHHhCCCeEE------EEEECCchHH
Confidence 678886 21 1 111255677888877 34566663 566 44343 3354 56666665421 22221 1110
Q ss_pred C-------C---CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 122 V-------G---HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 122 ~-------g---~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. + .+...+..+..++.+++ |+....-.++.|+...++++++.++|++|
T Consensus 467 i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 524 (535)
T PRK07524 467 IRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLI 524 (535)
T ss_pred HHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 0 01111222223444444 55556668999999999999999999998
No 220
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=57.38 E-value=54 Score=25.60 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=48.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcC-CcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhc
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLG-VSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKC 282 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~g-i~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~ 282 (325)
++.|++.|.....+..+...|.+. + +.+.+++.... ......+.+.+-+|++=. .|-..++.+.+....
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~-~~~~~~~~~~~~~-----~~~~~~~~~~d~~I~iS~----sG~t~e~~~~~~~a~ 70 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERL-AGIPVEVEAASEF-----RYRRPLLDEDTLVIAISQ----SGETADTLAALRLAK 70 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHh-cCCceEEEehhHh-----hhcCCCCCCCcEEEEEeC----CcCCHHHHHHHHHHH
Confidence 377999999999999999999876 5 77776651111 111111333444555522 355556666554432
Q ss_pred cccCCCCeEEEcccC
Q psy8699 283 FLSLEAPIRRVTGYD 297 (325)
Q Consensus 283 ~~~~~~~v~~~~g~~ 297 (325)
..+.++.-+++.+
T Consensus 71 --~~g~~vi~iT~~~ 83 (126)
T cd05008 71 --EKGAKTVAITNVV 83 (126)
T ss_pred --HcCCeEEEEECCC
Confidence 1246777776543
No 221
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=56.99 E-value=84 Score=32.18 Aligned_cols=113 Identities=7% Similarity=-0.017 Sum_probs=65.0
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..+..|+|++++ .-|++++| .++.. +.....|. .+...++|.. +++..-.+..
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDGsf~m~~~eL~-Ta~r~~lpvi-------ivV~NN~~~~~i 497 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCI-TGEGSIQMCIQELS-TCLQYDTPVK-------IISLNNRYLGMV 497 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhcCHHHHH-HHHHcCCCeE-------EEEEECCcchHH
Confidence 678887542 334556778888877 34666674 67743 33334443 4665566542 1122111110
Q ss_pred ---------CC-CCCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEe
Q psy8699 123 ---------GH-GALYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDPCIFF 171 (325)
Q Consensus 123 ---------g~-g~th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i~ 171 (325)
+. ..+.. ..-|. ++-+++ |+.-+.-.+..|+...++.|++. ++|++|-
T Consensus 498 ~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 558 (587)
T PRK06965 498 RQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLD 558 (587)
T ss_pred HHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 01110 11133 344445 77788889999999999999984 8899993
No 222
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=55.60 E-value=1.6e+02 Score=30.25 Aligned_cols=150 Identities=12% Similarity=0.062 Sum_probs=76.5
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechh-hH-HHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPL-SE-QGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gI-aE-~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
++....+.++-+.-++ -++..|.+....+ ...+.... |.+|+..+- .- -..+..|+|++++ .-|++++| .++
T Consensus 387 l~~~~v~~~l~~~~~d-~i~~~D~G~~~~~--~~~~~~~~-p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i-~GD 461 (616)
T PRK07418 387 IYPQEVLLAVRDLAPD-AYYTTDVGQHQMW--AAQFLRNG-PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICI-AGD 461 (616)
T ss_pred cCHHHHHHHHHhhCCC-cEEEECChHHHHH--HHHhhhcC-CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEE-Ecc
Confidence 4444455554443344 3344566521111 12222334 778776421 11 1244566776666 35677775 677
Q ss_pred c--HHHHHHHHHHHHhhcccccCCceeccceEEeccC-ccC--------C--CCCCC---CChhHHHHHcCCCCcEEEee
Q psy8699 85 Y--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAV--------G--HGALY---HSQSPEAYFAHTPGIKVVIP 148 (325)
Q Consensus 85 F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~--------g--~g~th---~~~~d~~~~~~ip~~~v~~P 148 (325)
. ++. ...|. .+.+.++|... +++-... |.. + ..++. +..+...+..++ |+.-+.-
T Consensus 462 G~f~m~-~~eL~-Ta~r~~lpvi~------vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V 532 (616)
T PRK07418 462 ASFLMN-IQELG-TLAQYGINVKT------VIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVI 532 (616)
T ss_pred hHhhhh-HHHHH-HHHHhCCCeEE------EEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEe
Confidence 4 433 33343 46665665432 2222111 100 0 00111 111222344445 6777777
Q ss_pred CCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 149 RGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 149 ~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
.+++|+...++.+++.++|++|-
T Consensus 533 ~~~~el~~al~~a~~~~~p~lIe 555 (616)
T PRK07418 533 SERDQLKDAIAEALAHDGPVLID 555 (616)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999993
No 223
>PRK08266 hypothetical protein; Provisional
Probab=55.52 E-value=1e+02 Score=31.14 Aligned_cols=113 Identities=9% Similarity=0.025 Sum_probs=63.1
Q ss_pred CCceeechhh--HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPLS--EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gIa--E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+.. =-..++.|.|++++. -++++++ .++.. +.....|. .+...++|... +++-. .+..
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v-~GDG~f~~~~~eL~-ta~~~~lpv~i------vv~NN-~~y~~~ 462 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSI-TGDGGFMFGVQELA-TAVQHNIGVVT------VVFNN-NAYGNV 462 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchhhhccHHHHH-HHHHhCCCeEE------EEEeC-CcchHH
Confidence 6778766421 112345778887764 4566664 56642 33344443 45655555421 12221 1110
Q ss_pred ---------C--CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 ---------G--HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 ---------g--~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+ .+...+..+...+.+++ |+..+.-.+..|++..++++++.++|.+|-
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 463 RRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 0 01111222223444555 777888899999999999999989999884
No 224
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=55.32 E-value=89 Score=31.77 Aligned_cols=111 Identities=6% Similarity=0.004 Sum_probs=63.4
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 49 KHRVFNTPL-SE-QGIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 49 p~r~~~~gI-aE-~~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.+|+..+- .- -..++.|.|++++. -++++++ -++ |++-. ..|. .+...+++... +++-. .+..
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i-~GDG~f~m~~-~eL~-Ta~~~~lpvi~------vV~NN-~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINF-TGDGSILMNI-QELM-TAVEYKIPVIN------IILNN-NFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-ecCchhcccH-HHHH-HHHHhCCCeEE------EEEEC-Ccchh
Confidence 677886431 22 23666888888774 4666664 566 44433 3343 46655665421 12221 1110
Q ss_pred ---------C-C-CCCCC--ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ---------G-H-GALYH--SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ---------g-~-g~th~--~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+ . ..+.+ ..+..++.+++ |..-+.-.+..|+..++++++..++|.+|
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 533 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALI 533 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 0 01111 12223455555 66777889999999999999999999999
No 225
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=54.99 E-value=61 Score=33.29 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=60.2
Q ss_pred eeechhhHHHHHHHHHHHhcc----C-CeEEEEeccccc--H-HHHHHHHHHHHhhcccccCCceeccceEEeccCccCC
Q psy8699 52 VFNTPLSEQGIVGFGIGLAVS----G-ATAIAEIQFADY--I-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG 123 (325)
Q Consensus 52 ~~~~gIaE~~~v~~a~GlA~~----G-~~p~~~it~~~F--~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g 123 (325)
++..|+.= +.+++|.|+|++ | -..+++ .+++. . -.++|.+. .++..+.+.. + ++.-......+
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~-~iGDG~~~eG~~~EAln-~A~~~k~~li--~----Ii~dN~~si~~ 179 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIA-VIGDGSLSGGLALEGLN-NAAELKSNLI--I----IVNDNQMSIAE 179 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEE-EECchhhhcchHHHHHH-HHHhhCCCEE--E----EEECCCCcCCC
Confidence 34555533 467778887766 3 234455 36765 3 36788874 5775443221 1 11112112222
Q ss_pred C-CCCCCChh--------H-HHHHcC--CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 124 H-GALYHSQS--------P-EAYFAH--TPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 124 ~-g~th~~~~--------d-~~~~~~--ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
. ++...... + ...+.+ ++.+.++...|..++.++++++.+.++|++|-..
T Consensus 180 ~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~ 241 (581)
T PRK12315 180 NHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIH 241 (581)
T ss_pred CCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1 21111111 1 234555 4455555667888888888887777899999654
No 226
>PRK12559 transcriptional regulator Spx; Provisional
Probab=54.76 E-value=37 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
..+..|.+|.+.|++. |+....+++.. .|++.+.|.+.++.+
T Consensus 8 ~~C~~crkA~~~L~~~-gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 8 ASCASCRKAKAWLEEN-QIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred CCChHHHHHHHHHHHc-CCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 4567889999999998 99999999876 688888888877763
No 227
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=54.64 E-value=1.4e+02 Score=25.78 Aligned_cols=28 Identities=14% Similarity=-0.008 Sum_probs=22.9
Q ss_pred EeeCCHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 146 VIPRGPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 146 ~~P~~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
+...|.+++.++++.+.+.++|++|...
T Consensus 161 vdG~d~~~l~~a~~~a~~~~~P~~I~~~ 188 (195)
T cd02007 161 VDGHNIEALIKVLKEVKDLKGPVLLHVV 188 (195)
T ss_pred ECCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5667889999999988878899999443
No 228
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=54.29 E-value=35 Score=26.80 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
..+..|.+|.+.|++. |++..++++.. .|.+.+.+.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~-gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEH-QIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHC-CCceEEEecCC-CcchHHHHHHHHHHh
Confidence 5677899999999998 99999999865 677888887777654
No 229
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=54.07 E-value=43 Score=27.54 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=37.4
Q ss_pred EEEEEechhHH----HHHHHHHHHHhhcCC--cEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 205 VTLIGWGTQVH----VLREVAGLAKEQLGV--SCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 205 v~ii~~G~~~~----~a~~A~~~L~~~~gi--~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++|+++|+... .-..+++.|++. .. ++++++..+.- ..+...+.+++++|+||-.
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~-~~~~~v~~id~gt~~----~~l~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAY-LLPPHVRLVDCGTAG----MEVMFRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhc-CCCCCeEEEECCCCH----HHHHHHhcCCCEEEEEEeC
Confidence 36788888662 466777777664 33 47888888862 2334456678889999874
No 230
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=53.89 E-value=36 Score=27.76 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=35.9
Q ss_pred EEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 207 LIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 207 ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|+++|+.. .....+++.|++. ++++++..+. ...+...+.+++++|+||-.
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~---~v~vi~~g~~----~~~ll~~i~~~d~viiVDA~ 56 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC---GAPVFDGGLD----GFGLLSHLENYDIVIFIDVA 56 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC---CCEEEECCCc----HHHHHHHHcCCCEEEEEEee
Confidence 67788766 3567778888764 5678888873 23344556788899999884
No 231
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=53.62 E-value=31 Score=26.95 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
.....|.+|.+.|+++ |+....+++.. .|...+.|.+.+++.
T Consensus 7 ~~C~~c~ka~~~L~~~-~i~~~~idi~~-~~~~~~el~~~~~~~ 48 (111)
T cd03036 7 PKCSTCRKAKKWLDEH-GVDYTAIDIVE-EPPSKEELKKWLEKS 48 (111)
T ss_pred CCCHHHHHHHHHHHHc-CCceEEecccC-CcccHHHHHHHHHHc
Confidence 4667899999999998 99999999876 577787787766654
No 232
>PLN02790 transketolase
Probab=53.51 E-value=1.6e+02 Score=30.79 Aligned_cols=85 Identities=7% Similarity=-0.062 Sum_probs=50.7
Q ss_pred ccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCC-CChhHH-HHHcCCCCcEEEee----CCHH
Q psy8699 82 FADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALY-HSQSPE-AYFAHTPGIKVVIP----RGPY 152 (325)
Q Consensus 82 ~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th-~~~~d~-~~~~~ip~~~v~~P----~~~~ 152 (325)
.++.- -.++|-+. .++..++++.. + ++........ +.+. ...+++ ..+..+ ||.++.+ .|..
T Consensus 144 ~GDG~l~eG~~~EAl~-~A~~~~L~nli-~----i~d~N~~~i~--~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~ 214 (654)
T PLN02790 144 LGDGCQMEGISNEAAS-LAGHWGLGKLI-V----LYDDNHISID--GDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYD 214 (654)
T ss_pred ECcCcccchHHHHHHH-HHHHhCCCCEE-E----EEecCCcccc--CCcccccchhHHHHHHHc-CCeEEEECCCCCCHH
Confidence 56652 57777774 57766665421 1 1112211222 2221 113343 467777 9999998 5678
Q ss_pred HHHHHHHHhHh-CCCcEEEecccc
Q psy8699 153 KAKGLLLSCIK-DKDPCIFFEPKV 175 (325)
Q Consensus 153 e~~~~~~~a~~-~~~Pv~i~~~~~ 175 (325)
++..+++.+.+ .++|++|-....
T Consensus 215 ~l~~a~~~a~~~~~~P~lI~~~T~ 238 (654)
T PLN02790 215 EIRAAIKEAKAVTDKPTLIKVTTT 238 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEe
Confidence 88888888876 689999976543
No 233
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=53.39 E-value=62 Score=28.26 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=42.0
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhhc--CCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 203 TDVTLIGWGTQVH----VLREVAGLAKEQL--GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 203 ~dv~ii~~G~~~~----~a~~A~~~L~~~~--gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
.+++|++.|+... .-..+++.|++.+ .-++++++..+.-+ .+...+.+.+++|+||--
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDAv 67 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDAI 67 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEECC
Confidence 4689999999773 5677888886642 23488999998632 344666788899999863
No 234
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=53.36 E-value=80 Score=28.13 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccccCCCH--------HHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSILPWDR--------ETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~--------~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
...+..+++.+.++ |.+++++++.-+-.++. ..+++.++..+.+|++=-. +++++...+-.++
T Consensus 43 ~~la~~~~~~~~~~-g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE-Yn~sipg~LKNai 113 (219)
T TIGR02690 43 RLLAEEAARLLGCE-GRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE-RHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHHhhc-CCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc-cccCcCHHHHHHH
Confidence 34555566677767 99999999875522221 3466777778877777555 5788877766665
No 235
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=53.24 E-value=96 Score=31.94 Aligned_cols=112 Identities=11% Similarity=-0.035 Sum_probs=65.5
Q ss_pred CCceeechh-hHHH-HHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-SEQG-IVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~~-~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|++.+- .-.+ .++.|.|++++. -+++++| .++.. +.....|. .+...+++... +++-. .+..
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~eL~-Ta~~~~lpv~i------vV~NN-~~~g~i 507 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAI-DGDGCFQMTNQELA-TCAIEGIPIKV------ALINN-GNLGMV 507 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEE-EcchhhhccHHHHH-HHHHcCCCeEE------EEEEC-CchHHH
Confidence 678887642 3333 677888888873 5777775 67743 33333443 46656665321 22221 1110
Q ss_pred --------C-C-CC-----CCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q psy8699 123 --------G-H-GA-----LYHS-QSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDPCIF 170 (325)
Q Consensus 123 --------g-~-g~-----th~~-~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i 170 (325)
+ . .. .|+. .+..++.+++ |+.-+.-.+.+|+..+++.+++. ++|++|
T Consensus 508 ~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lI 571 (612)
T PRK07789 508 RQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVI 571 (612)
T ss_pred HHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 0 0 01 1111 2223455555 67777789999999999999985 899999
No 236
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=53.00 E-value=1.2e+02 Score=30.77 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=29.1
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
.+.+++ |+.-..-.+++|+...+++++..++|++|-
T Consensus 499 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~ 534 (557)
T PRK08199 499 ALARAY-GGHGETVERTEDFAPAFERALASGKPALIE 534 (557)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 344555 666777789999999999999999999994
No 237
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=52.47 E-value=1.2e+02 Score=30.50 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCceeech-hh-HHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTP-LS-EQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~g-Ia-E~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+ .. =-..+..|.|++++ .-++++++ -++.. +.....|. .+...+++.. +++..-.+..
T Consensus 398 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDGsf~m~~~eL~-Ta~~~~lpi~-------ivV~NN~~y~~~ 468 (539)
T TIGR02418 398 ARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSV-SGDGGFLFSSMELE-TAVRLKLNIV-------HIIWNDNGYNMV 468 (539)
T ss_pred CCceecCCCccccccHHHHHHHHHHhCCCCcEEEE-EcchhhhchHHHHH-HHHHhCCCeE-------EEEEECCcchHH
Confidence 67776532 11 11345577777765 34566664 56642 33333443 4666556542 1122111111
Q ss_pred C------CC---CC-CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 G------HG---AL-YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 g------~g---~t-h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. .+ ++ ..+.+..++.+.+ |+.-....+++|+...++++++.++|.+|
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lI 525 (539)
T TIGR02418 469 EFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVV 525 (539)
T ss_pred HHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 0 01 01 1122333455555 77788889999999999999999999999
No 238
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=51.76 E-value=50 Score=28.19 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=57.7
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC-----cEEEEecCCcCCChHHHHH
Q psy8699 202 GTDVTLIGWGTQVHV-LREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG-----RVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 202 g~dv~ii~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~-----~vivvEe~~~~gglg~~v~ 275 (325)
|.+++|++-|..+.+ |+-|..+.... +|.-+=|++.|+--.-++.|.+.++... .++++--+ .-||-=++-.
T Consensus 83 GKRvIiiGGGAqVsqVA~GAIsEADRH-NiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGs-lMGGkIteaV 160 (218)
T COG1707 83 GKRVIIIGGGAQVSQVARGAISEADRH-NIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGS-LMGGKITEAV 160 (218)
T ss_pred CcEEEEECCchhHHHHHHhhcchhhhc-ccccceeeeecccccChHHHHHHHHHHhccccceeEEEecc-cccchHHHHH
Confidence 668899999987654 66676666554 8888888999986677777777665432 24555444 4444322222
Q ss_pred HHHHhhccccCCCCeEEEcccCCCCc
Q psy8699 276 ASIQDKCFLSLEAPIRRVTGYDTPFP 301 (325)
Q Consensus 276 ~~l~e~~~~~~~~~v~~~~g~~~~~~ 301 (325)
+.+.+. ++.|+.++ ...+..|
T Consensus 161 k~lr~~----hgI~VISL-~M~GSVp 181 (218)
T COG1707 161 KELREE----HGIPVISL-NMFGSVP 181 (218)
T ss_pred HHHHHh----cCCeEEEe-ccCCCCc
Confidence 333332 45788776 4444444
No 239
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=51.28 E-value=64 Score=22.96 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=34.2
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEec
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHE 263 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe 263 (325)
++.|++.+. ....|++.++.|+++ |+.+.+.... +.++ +.+..+.+ +...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~-g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDA-GIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHC-CCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 577777776 345788999999998 9988764322 2333 33433322 2345566654
No 240
>PRK07064 hypothetical protein; Provisional
Probab=51.06 E-value=85 Score=31.67 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=61.1
Q ss_pred CCceeechh-hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC---
Q psy8699 49 KHRVFNTPL-SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--- 122 (325)
|.+++..+- +=-..++.|.|++++. -++++++ -++.. +.....|. .+...+++... +++-. .+..
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i-~GDGsf~m~~~eL~-Ta~~~~lpv~i------vV~NN-~~yg~~~ 466 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGL-VGDGGLMLNLGELA-TAVQENANMVI------VLMND-GGYGVIR 466 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEE-EcchHhhhhHHHHH-HHHHhCCCeEE------EEEeC-ChhHHHH
Confidence 556654321 1112445777777663 5667774 67743 33344444 45555554421 22221 1110
Q ss_pred -------C--C-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 -------G--H-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 -------g--~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+ . +...+..+...+.+.+ |+.-....+++|+...++.+++.++|.+|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (544)
T PRK07064 467 NIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLV 523 (544)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 0 0 1111222223444444 66777889999999999999999999999
No 241
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=50.97 E-value=51 Score=27.83 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=38.2
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhhcCC---cEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 203 TDVTLIGWGTQVH----VLREVAGLAKEQLGV---SCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 203 ~dv~ii~~G~~~~----~a~~A~~~L~~~~gi---~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
..++|+++|+... .-...++.|++. .. ++.|++.-+.-|. +...+..++++|+||--
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~-~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDav 65 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKR-YKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDAV 65 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHh-cCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEee
Confidence 3578888888652 345667777665 33 5789999986432 33446677788888764
No 242
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=50.95 E-value=2e+02 Score=28.85 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhHh------CCCcEEEecccccccccccCCCCCCcc-cCCCcee----------------Eeee-CCc
Q psy8699 149 RGPYKAKGLLLSCIK------DKDPCIFFEPKVLYRAAVEDVPEDYYE-LPLDKAD----------------ILVA-GTD 204 (325)
Q Consensus 149 ~~~~e~~~~~~~a~~------~~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~gk~~----------------~~~~-g~d 204 (325)
.-|+++...+..|++ .-+|+-+-++.- ...+.++-+.. |+.-.|+ .++. ..-
T Consensus 157 tRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QD----Vq~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~P 232 (617)
T COG3962 157 TRPEQLMSALPRAMRVMTDPADCGPVTLALCQD----VQAEAYDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKP 232 (617)
T ss_pred CCHHHHHHHHHHHHHHhCChhhcCceEEEechh----hhhhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCC
Confidence 568999999999998 257998855432 11111111101 1111111 2222 345
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcE
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSC 232 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~ 232 (325)
++|.+-|.-+..|.++...+.+.+||-+
T Consensus 233 lIvaGGGv~YS~A~~~L~af~E~~~iPv 260 (617)
T COG3962 233 LIVAGGGVLYSGAREALRAFAETHGIPV 260 (617)
T ss_pred EEEecCceeechHHHHHHHHHHhcCCce
Confidence 7777777788889999888877767654
No 243
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=50.87 E-value=16 Score=28.92 Aligned_cols=38 Identities=29% Similarity=0.587 Sum_probs=26.9
Q ss_pred eeeCCcEEEEEech--hHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy8699 199 LVAGTDVTLIGWGT--QVHVLREVAGLAKEQLGVSCEVIDLVS 239 (325)
Q Consensus 199 ~~~g~dv~ii~~G~--~~~~a~~A~~~L~~~~gi~~~vi~~~~ 239 (325)
+.++.+++||++|. ++...-+|.+.++++ .++|+-.+|
T Consensus 58 lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k---~~~vi~~pT 97 (121)
T COG1504 58 LEEGPEVIVVGTGQSGMLELSEEAREFFRKK---GCEVIELPT 97 (121)
T ss_pred HhcCCcEEEEecCceeEEEeCHHHHHHHHhc---CCeEEEeCC
Confidence 34689999999996 445566777778877 556665555
No 244
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=50.57 E-value=86 Score=27.26 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=51.6
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccc--cC----------------CC-HHHHHHHHhccCcEEEEecCCcCCCh
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSI--LP----------------WD-RETVFQSARKTGRVIIAHEAPLTSGF 270 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l--~P----------------~d-~~~l~~~~~~~~~vivvEe~~~~ggl 270 (325)
.|++...+..+++.+++. |.++++++++-. +| -| .+.|.+.+..++.+|+.=.- +.|++
T Consensus 13 ~G~t~~l~~~~~~g~~~~-G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPv-y~g~v 90 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEA-GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPV-YFGNV 90 (207)
T ss_pred CCcHHHHHHHHHHHHHHc-CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCe-ecCCc
Confidence 588888899999999998 999999999854 22 12 35566667777776666444 67999
Q ss_pred HHHHHHHHHh
Q psy8699 271 GAELAASIQD 280 (325)
Q Consensus 271 g~~v~~~l~e 280 (325)
++++-.++..
T Consensus 91 sa~~K~fiDR 100 (207)
T COG0655 91 SAQMKAFIDR 100 (207)
T ss_pred hHHHHHHHhh
Confidence 9998887755
No 245
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=50.25 E-value=30 Score=24.41 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChH
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg 271 (325)
.....|.+|.+.|++. |+..+.+++.. .|-..+.+.+ ... +=.+++++.....+|+-
T Consensus 7 ~~Cp~C~~ak~~L~~~-~i~~~~~di~~-~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 7 NNCVQCKMTKKALEEH-GIAFEEINIDE-QPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCCHHHHHHHHHHHHC-CCceEEEECCC-CHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 4457888999999988 99999999975 2222222322 121 22567775543456653
No 246
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=50.25 E-value=77 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=37.9
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH-HhccCcEEEEecC
Q psy8699 203 TDVTLIGWG--T-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS-ARKTGRVIIAHEA 264 (325)
Q Consensus 203 ~dv~ii~~G--~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~-~~~~~~vivvEe~ 264 (325)
.++.|++.+ . ....+++.++.|+++ |+.+.+- .. +.+..+ +..+ ..+...++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~-gi~v~~d-~~--~sl~kq-lk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELREL-GFSVKYD-DS--GSIGRR-YARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHC-CCEEEEe-CC--CCHHHH-HHHhHhcCCCEEEEECcC
Confidence 467888887 4 456788889999998 9998863 33 455433 4333 2345567777765
No 247
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=50.10 E-value=56 Score=26.47 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=37.0
Q ss_pred EEEechhHH----HHHHHHHHHHhhc-CCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 207 LIGWGTQVH----VLREVAGLAKEQL-GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 207 ii~~G~~~~----~a~~A~~~L~~~~-gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|+++|+... .-..+++.|++.. .-++++++..+.- ..+...+++++++|+||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~----~~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG----LELLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhcCCeEEEEECc
Confidence 677777662 4667788887651 1368889888862 2344556678889999875
No 248
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=50.05 E-value=41 Score=24.62 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=40.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh--ccCcEEEEecCCc
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR--KTGRVIIAHEAPL 266 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~--~~~~vivvEe~~~ 266 (325)
++|.+. +....|..|.+.|.++ |++...+++..-.+-..+...+... .+=.+|++.+...
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~-g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~i 64 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRK-GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHV 64 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHc-CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEE
Confidence 455555 4578899999999998 9999999998876522222223332 2336888888544
No 249
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.66 E-value=51 Score=26.77 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
..+..|.+|.+.|++. |+...++++.. .|++.+.|.+.+++.
T Consensus 8 ~~C~~crkA~~~L~~~-~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAH-QLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHc-CCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 5667899999999998 99999999876 688888888887764
No 250
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=49.47 E-value=1.6e+02 Score=24.94 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=57.4
Q ss_pred CCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC--
Q psy8699 49 KHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-- 125 (325)
Q Consensus 49 p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-- 125 (325)
|.+|+..|. =-..+..|.|++++.-++++++ .++.. +.....+. .+...+.+ ++. +++..-.+..-.+
T Consensus 35 ~~~~~~~g~-mG~~lp~AiGaala~~~~vv~i-~GDG~f~m~~~el~-ta~~~~~~--~l~----vvV~NN~~~~~~~~~ 105 (179)
T cd03372 35 PLNFYMLGS-MGLASSIGLGLALAQPRKVIVI-DGDGSLLMNLGALA-TIAAEKPK--NLI----IVVLDNGAYGSTGNQ 105 (179)
T ss_pred ccccccccc-hhhHHHHHHHHHhcCCCcEEEE-ECCcHHHhCHHHHH-HHHHcCCC--CEE----EEEEcCccccccCCC
Confidence 566665432 1134457788776644788885 77753 32233333 34433321 111 1222211211011
Q ss_pred --CCCCChhHHHHHcCCCCcEEEeeC-CHHHHHHHHHHhHhCCCcEEEec
Q psy8699 126 --ALYHSQSPEAYFAHTPGIKVVIPR-GPYKAKGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 126 --~th~~~~d~~~~~~ip~~~v~~P~-~~~e~~~~~~~a~~~~~Pv~i~~ 172 (325)
...+..+..++.+++ |+...... +.+|+..+++++. ++|.+|-.
T Consensus 106 ~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lIev 152 (179)
T cd03372 106 PTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFIHV 152 (179)
T ss_pred CCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEEEE
Confidence 111122233444444 55555566 9999999999998 78999843
No 251
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.24 E-value=1.6e+02 Score=30.12 Aligned_cols=112 Identities=12% Similarity=0.023 Sum_probs=60.7
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.+|+..+- +=-..+..|+|++++. -++++++ .++ |.... ..|. .+...+++... ++..-.+..
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~-~el~-Ta~~~~lpi~~-------vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICI-AGDASFQMNI-QELQ-TIAENNIPVKV-------FIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEE-EecchhhccH-HHHH-HHHHhCCCeEE-------EEEECCccHH
Confidence 667776521 1113556777777763 3666664 666 44343 3343 45666665431 122211110
Q ss_pred -C------CC----CCC-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 -G------HG----ALY-HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 -g------~g----~th-~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
. .+ ... ...+...+.+++ |+.-..-.+..|+..+++.+++.++|.+|-
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 541 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVD 541 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 011 112222344444 555555589999999999999999999983
No 252
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=49.24 E-value=1.2e+02 Score=30.90 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=62.8
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC-CeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-
Q psy8699 49 KHRVFNTPL-SEQ-GIVGFGIGLAVSG-ATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~-~~v~~a~GlA~~G-~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~- 122 (325)
|.+|+..+- .=. ..++.|.|++++. -++++++ .++ |+.-.. .|. .+...+++.. +++..-.+..
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i-~GDGsf~m~~~-eL~-ta~r~~lpi~-------ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAI-VGDGGFQMTLQ-ELS-VIKELSLPVK-------VVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHH-HHH-HHHHhCCCeE-------EEEEECchHHH
Confidence 677886532 111 2666788887763 3566664 566 444333 343 4665555432 1222211211
Q ss_pred -C------CCC----CCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 -G------HGA----LYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 -g------~g~----th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
. .+. ... ..-|. .+.+.+ |+.-+...+.+|+..+++++++.++|++|-
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 544 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVID 544 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 011 110 11233 344444 778888899999999999999999999993
No 253
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=49.18 E-value=79 Score=32.12 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=25.6
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 142 GIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 142 ~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
|+.-+...+++|+...++++++.++|++|
T Consensus 516 G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 516 GLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred CCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 55667779999999999999998999998
No 254
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=48.96 E-value=2.2e+02 Score=29.07 Aligned_cols=113 Identities=9% Similarity=-0.000 Sum_probs=59.5
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccC-
Q psy8699 49 KHRVFNTPL-SEQ-GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAV- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~-~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~- 122 (325)
|.+|+..+. .-. ..++.|.|++++- -|+++++ -++.. +.....| ..+...++|... +|+... .|..
T Consensus 398 ~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDGsf~m~~~eL-~Tavr~~lpi~~------VV~NN~~yg~i~ 469 (575)
T TIGR02720 398 KNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNL-AGDGAFSMTMQDL-LTQVQYHLPVIN------IVFSNCTYGFIK 469 (575)
T ss_pred CCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEE-EcccHHHhhHHHH-HHHHHhCCCeEE------EEEeCCccHHHH
Confidence 567776542 111 2344555555542 4666664 67742 3334444 356666665421 112211 1110
Q ss_pred ----CCCCCCC-----ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH--hCCCcEEE
Q psy8699 123 ----GHGALYH-----SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI--KDKDPCIF 170 (325)
Q Consensus 123 ----g~g~th~-----~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~--~~~~Pv~i 170 (325)
..+..+. ..+..++.+++ |+.-..-.+..|+...+++++ +.++|++|
T Consensus 470 ~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~li 527 (575)
T TIGR02720 470 DEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLI 527 (575)
T ss_pred HHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 0011111 12223344444 666666789999999999999 78999998
No 255
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.68 E-value=1.5e+02 Score=30.30 Aligned_cols=112 Identities=10% Similarity=-0.025 Sum_probs=62.5
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..+..|+|++++. -+++++| .++.. +.....|. .+...++|... ++..-.+..
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~EL~-Ta~r~~lpv~~-------vV~NN~~y~~i 481 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCV-TGDGSIQMNIQELS-TALQYDIPVKI-------INLNNRFLGMV 481 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEE-EcchHhhccHHHHH-HHHHcCCCeEE-------EEEeCCccHHH
Confidence 677886531 1113556777777763 4566664 67642 33334443 56666665531 122111110
Q ss_pred C-------CC---CCC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q psy8699 123 G-------HG---ALY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDPCIF 170 (325)
Q Consensus 123 g-------~g---~th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~Pv~i 170 (325)
. .+ .+. ...+..++.+++ |..-..-.+..|+..+++.+++. ++|++|
T Consensus 482 ~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lI 541 (572)
T PRK08979 482 KQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFV 541 (572)
T ss_pred HHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 0 00 110 112223445555 66777889999999999999985 999988
No 256
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=48.59 E-value=74 Score=29.32 Aligned_cols=142 Identities=12% Similarity=-0.005 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHH-HHHHHhccCCeEEEEecccccHH--
Q psy8699 11 FQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVG-FGIGLAVSGATAIAEIQFADYIF-- 87 (325)
Q Consensus 11 ~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~-~a~GlA~~G~~p~~~it~~~F~~-- 87 (325)
.+|+.++-+++|+++++.++..- -.....+. -+-.++ .++....- ++.-+..-|.+.|++++|--.+.
T Consensus 76 ~~af~kIkekRpDIl~ia~~~~E------Dp~~i~~~-aDi~~~--~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~ 146 (275)
T PF12683_consen 76 AEAFRKIKEKRPDILLIAGEPHE------DPEVISSA-ADIVVN--PDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYE 146 (275)
T ss_dssp HHHHHHHHHH-TTSEEEESS--S-------HHHHHHH-SSEEEE----HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSH
T ss_pred HHHHHHHHhcCCCeEEEcCCCcC------CHHHHhhc-cCeEec--cchhhccHHHHHHHHHcCCceEEEEechhhcchH
Confidence 34455555555555555554431 11222222 233444 23444333 33444455999999987776752
Q ss_pred --HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 88 --PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 88 --ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
...-++....|. ++ ++..+- +..=.|.+..|-.+..| =.+|+ +|+..--.=+-|..+|....+-+++.+++
T Consensus 147 ~l~~Rr~~M~~~C~-~l---Gi~fv~-~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~ 221 (275)
T PF12683_consen 147 LLARRRDIMEEACK-DL---GIKFVE-VTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALE 221 (275)
T ss_dssp HHHHHHHHHHHHHH-HC---T--EEE-EEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-Hc---CCeEEE-EeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHH
Confidence 222223334552 12 222221 11111222222112221 12333 44443222346666888999999999998
Q ss_pred CCC
Q psy8699 164 DKD 166 (325)
Q Consensus 164 ~~~ 166 (325)
+.+
T Consensus 222 ~g~ 224 (275)
T PF12683_consen 222 YGG 224 (275)
T ss_dssp H--
T ss_pred cCC
Confidence 643
No 257
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=48.53 E-value=83 Score=30.26 Aligned_cols=109 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred echhhHHHHHHHHHHHhccC-Ce-EEEEecccccH--H-HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCC
Q psy8699 54 NTPLSEQGIVGFGIGLAVSG-AT-AIAEIQFADYI--F-PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALY 128 (325)
Q Consensus 54 ~~gIaE~~~v~~a~GlA~~G-~~-p~~~it~~~F~--~-ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th 128 (325)
-+|-.=-.++|.|.++-+.| .. +.++ .|.+.. + --++-+ |.++..++|.+++ |-+ ...+.+-. -..
T Consensus 137 iVg~Q~~~AaG~A~a~k~~~~~~~Va~~-~~GDGat~qG~FhEal-N~A~v~klPvvf~--ieN----N~yAiSvp-~~~ 207 (358)
T COG1071 137 IVGTQIPLAAGAALALKYRGTKDGVAVA-FFGDGATNQGDFHEAL-NFAAVWKLPVVFV--IEN----NQYAISVP-RSR 207 (358)
T ss_pred eecccccHHHHHHHHHHHhCCCCcEEEE-EecCCccccchHHHHH-HHHHHhcCCEEEE--Eec----CCceeecc-hhh
Confidence 33333345556666666667 33 5555 477764 2 334444 6788777776422 111 11111100 011
Q ss_pred CChhH-H---HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEec
Q psy8699 129 HSQSP-E---AYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFE 172 (325)
Q Consensus 129 ~~~~d-~---~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~ 172 (325)
++..+ + +.--.||+++| .=.|...++.++++|.+ .++|++|-.
T Consensus 208 q~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 208 QTAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred cccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22222 2 23337999988 88999999999999887 378999954
No 258
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.53 E-value=2.2e+02 Score=28.97 Aligned_cols=112 Identities=9% Similarity=-0.051 Sum_probs=61.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..|- +=-..+..|+|++++. -++++++ -++.. +.....|. .+...+++... ++..-.+..
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~eL~-Ta~r~~l~v~i-------vV~NN~~yg~i 481 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCV-TGDGSIQMNIQELS-TALQYELPVLV-------LNLNNRYLGMV 481 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEE-EcchhhhccHHHHH-HHHHhCCCeEE-------EEEeCchhhHH
Confidence 677887641 1113455777777663 4566664 56642 33333443 57766666431 121111111
Q ss_pred ------CCCC----CC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEE
Q psy8699 123 ------GHGA----LY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD---KDPCIF 170 (325)
Q Consensus 123 ------g~g~----th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~---~~Pv~i 170 (325)
..++ +. ...+...+.+++ |..-+.-.+..|+..+++.+++. ++|.+|
T Consensus 482 ~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lI 543 (574)
T PRK07979 482 KQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFV 543 (574)
T ss_pred HHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEE
Confidence 0011 11 112223455555 56667779999999999999985 899998
No 259
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=47.14 E-value=62 Score=27.47 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=34.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEE
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIA 261 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivv 261 (325)
+|.+++||+.|.++... +++.|.++ |.++.+++-++ +.+.+.+++.+-||+.
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~-g~~V~v~~r~~------~~l~~~l~~aDiVIsa 94 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNR-NATVTVCHSKT------KNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhC-CCEEEEEECCc------hhHHHHHhhCCEEEEc
Confidence 35689999999886652 34566666 88887777442 4556677777755544
No 260
>PRK11269 glyoxylate carboligase; Provisional
Probab=47.10 E-value=57 Score=33.41 Aligned_cols=113 Identities=10% Similarity=0.056 Sum_probs=63.1
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccC-
Q psy8699 49 KHRVFNTPL-SEQ-GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAV- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~-~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~- 122 (325)
|.+|++.|- .=. ..+..|+|++++. -|+++++ .++.. +.....|. .+...+++... +++-.. .|..
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~eL~-Ta~~~~lpv~~------vV~NN~~~g~i~ 480 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVAL-SGDYDFQFLIEELA-VGAQFNLPYIH------VLVNNAYLGLIR 480 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEE-EccchhhcCHHHHH-HHHHhCCCeEE------EEEeCCchhHHH
Confidence 678887642 212 2566778877774 5677774 67742 33333343 45655555421 222221 1100
Q ss_pred ----C--CC---CCC-----------CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEE
Q psy8699 123 ----G--HG---ALY-----------HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIF 170 (325)
Q Consensus 123 ----g--~g---~th-----------~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i 170 (325)
+ .. .++ +..+...+.+++ |+.-..-.+.+|+..+++++++ .++|.+|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~li 551 (591)
T PRK11269 481 QAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVV 551 (591)
T ss_pred HHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 0 00 000 112222344445 7778888999999999999995 6899998
No 261
>PRK10824 glutaredoxin-4; Provisional
Probab=46.99 E-value=49 Score=26.35 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCChHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~gglg~ 272 (325)
..+++|++-| +....+.+|.+.|++. |++..++++.. +. .+++.++. +=.-|++.... .||...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~----d~-~~~~~l~~~sg~~TVPQIFI~G~~-IGG~dd 86 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQ----NP-DIRAELPKYANWPTFPQLWVDGEL-VGGCDI 86 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecC----CH-HHHHHHHHHhCCCCCCeEEECCEE-EcChHH
Confidence 4679999998 4788999999999998 99999988854 22 23333332 33457776664 488765
Q ss_pred HHH
Q psy8699 273 ELA 275 (325)
Q Consensus 273 ~v~ 275 (325)
..+
T Consensus 87 l~~ 89 (115)
T PRK10824 87 VIE 89 (115)
T ss_pred HHH
Confidence 443
No 262
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=46.83 E-value=53 Score=25.14 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
+....|.+|.+.|++. |++...+++.. .|.+.+.+.+.+.+.+
T Consensus 7 ~~C~~c~ka~~~L~~~-~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEH-GIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHc-CCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 4567899999999998 99999999875 6778888877766543
No 263
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=46.56 E-value=73 Score=23.48 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=37.9
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH-HhccCcEEEEecC
Q psy8699 204 DVTLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS-ARKTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~-~~~~~~vivvEe~ 264 (325)
++.|+..|. ....|.+.++.|++. |+.+.+-+ .-..+. ..++.+ ..+..-++++-+.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~-gi~v~~d~--~~~~~~-k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKA-GIRVELDD--SDKSLG-KQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHT-TSEEEEES--SSSTHH-HHHHHHHHTTESEEEEEEHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHC-CCEEEEEC--CCCchh-HHHHHHhhcCCeEEEEECch
Confidence 467888887 446788999999998 98887665 333343 345444 3345667777654
No 264
>PRK08611 pyruvate oxidase; Provisional
Probab=46.49 E-value=1.5e+02 Score=30.34 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=62.0
Q ss_pred CCceeec-hhhHH-HHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNT-PLSEQ-GIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~-gIaE~-~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+.. +..-. ..+..|.|+++. .-++++++ .++.. +.....|. .+...+++... +|+-. .+..
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDGsf~m~~~eL~-Ta~r~~l~~ii------vV~NN-~~~g~i 468 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAI-CGDGGFSMVMQDFV-TAVKYKLPIVV------VVLNN-QQLAFI 468 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEE-EcccHHhhhHHHHH-HHHHhCCCeEE------EEEeC-CcchHH
Confidence 5667642 21111 245566776665 35677774 67743 33344443 46665555421 22222 1111
Q ss_pred -----CCCC----CCC-ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 -----GHGA----LYH-SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 -----g~g~----th~-~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
..+. +.- ..+..++.+++ |+.-....+++|+..+++++++.++|++|-
T Consensus 469 ~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (576)
T PRK08611 469 KYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIID 526 (576)
T ss_pred HHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0011 111 12222344444 677788899999999999999999999993
No 265
>PRK10126 tyrosine phosphatase; Provisional
Probab=45.23 E-value=37 Score=27.97 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEc---
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVT--- 294 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~--- 294 (325)
-+|++.|++. |++.. -..-+++..+. +...+.|+++|+.+. ..+.....+ ...++..+.
T Consensus 47 ~~a~~~l~~~-Gid~~---~h~sr~lt~~~----~~~~DlIl~Md~~~~-----~~l~~~~p~-----~~~k~~~l~~~~ 108 (147)
T PRK10126 47 PTAISVAAEH-QLSLE---GHCARQISRRL----CRNYDLILTMEKRHI-----ERLCEMAPE-----MRGKVMLFGHWD 108 (147)
T ss_pred HHHHHHHHHc-CCCcC---CCccccCCHHH----hccCCEEEECCHHHH-----HHHHHhcCc-----ccCcEEehhhhC
Confidence 3466667776 88753 23445666553 356788999987542 122222111 112232221
Q ss_pred ---ccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 295 ---GYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 295 ---g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
.+++||..-.+.|.- .-+.|.+++..+++
T Consensus 109 ~~~~I~DP~~~~~~~f~~-~~~~I~~~i~~l~~ 140 (147)
T PRK10126 109 NECEIPDPYRKSREAFEA-VYTLLERSARQWAQ 140 (147)
T ss_pred CCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 256777644444544 66677777777664
No 266
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=45.17 E-value=86 Score=25.64 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=36.4
Q ss_pred EEEechhHH----HHHHHHHHHHhhcC--CcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 207 LIGWGTQVH----VLREVAGLAKEQLG--VSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 207 ii~~G~~~~----~a~~A~~~L~~~~g--i~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|+++|+... .-..+++.|++... -.+++++..+.- ..+...+.+++++|+||-.
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~----~~l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG----LELLDAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhCCCEEEEEEcc
Confidence 677787652 45667777776521 358888888852 3344556788889999874
No 267
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=44.67 E-value=58 Score=27.19 Aligned_cols=57 Identities=18% Similarity=0.094 Sum_probs=37.1
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh--ccCcEEEEecC
Q psy8699 204 DVTLIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR--KTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~--~~~~vivvEe~ 264 (325)
+++|+++|+.. ..-..+++.|++...-++++++..+ -|++.. ..++ +.+++|+||-.
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~---~~i~~~~~d~vIiVDA~ 64 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDI---VAIRELRPERLLIVDAT 64 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHH---HHHHhcCCCEEEEEECC
Confidence 46789999877 3466777788664112588898888 344332 2333 45789998863
No 268
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=44.62 E-value=43 Score=23.91 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHHHHH
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~~v~ 275 (325)
+....|.+|.+.|++. |++...+++..- |-..+.+.+.... +=..|+++.. ..||+.+...
T Consensus 7 ~~Cp~C~~a~~~L~~~-~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~-~igg~~~~~~ 68 (79)
T TIGR02181 7 PYCPYCTRAKALLSSK-GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDV-HVGGCDDLYA 68 (79)
T ss_pred CCChhHHHHHHHHHHc-CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCE-EEcChHHHHH
Confidence 6678899999999998 999999998752 2112233322211 2367888776 5688876543
No 269
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=44.43 E-value=1.1e+02 Score=29.16 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=49.9
Q ss_pred eEEEEeccccc-H--HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCC-hhHH-HHHcCCCCcEEEee-
Q psy8699 75 TAIAEIQFADY-I--FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHS-QSPE-AYFAHTPGIKVVIP- 148 (325)
Q Consensus 75 ~p~~~it~~~F-~--~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~-~~d~-~~~~~ip~~~v~~P- 148 (325)
+.||- .++. + -.++|.+. .++..++.+. .. ++... +..-+|.+.-. .+|+ .-++++ ||.|+.-
T Consensus 145 ~vy~l--~GDGel~EG~~~EA~~-~A~~~~L~nL--i~---i~D~N--~~q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~ 213 (332)
T PF00456_consen 145 RVYVL--MGDGELQEGSVWEAAS-LAGHYKLDNL--IV---IYDSN--GIQIDGPTDIVFSEDIAKKFEAF-GWNVIEVC 213 (332)
T ss_dssp -EEEE--EEHHHHHSHHHHHHHH-HHHHTT-TTE--EE---EEEEE--SEETTEEGGGTHHSHHHHHHHHT-T-EEEEEE
T ss_pred eEEEE--ecCccccchhhHHHHH-HHHHhCCCCE--EE---EEecC--CcccCCCcccccchHHHHHHHHh-hhhhcccc
Confidence 45554 4665 3 46666665 5666666442 11 22222 32223433321 2343 456666 8888876
Q ss_pred --CCHHHHHHHHHHhHhC-CCcEEEeccccc
Q psy8699 149 --RGPYKAKGLLLSCIKD-KDPCIFFEPKVL 176 (325)
Q Consensus 149 --~~~~e~~~~~~~a~~~-~~Pv~i~~~~~l 176 (325)
.|.+++..+++++-.. ++|++|......
T Consensus 214 dGhd~~~i~~A~~~a~~~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 214 DGHDVEAIYAAIEEAKASKGKPTVIIARTVK 244 (332)
T ss_dssp ETTBHHHHHHHHHHHHHSTSS-EEEEEEE-T
T ss_pred cCcHHHHHHHHHHHHHhcCCCCceeecceEE
Confidence 6788888888888776 899999766543
No 270
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=44.31 E-value=99 Score=22.44 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=36.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH-HhccCcEEEEecC
Q psy8699 204 DVTLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS-ARKTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~-~~~~~~vivvEe~ 264 (325)
++.|+..+. ....+++.++.|++. |+.+.+-. .. +.+..+ +..+ ..+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~-g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLAN-GIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHC-CCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 466777664 456788889999998 99887533 22 455444 3333 2345567777764
No 271
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=44.28 E-value=46 Score=26.74 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=31.6
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEec
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
+|++-..|.+.++.|++. |+++.++++....+ . ...+...+.++++=.
T Consensus 7 tG~te~~A~~ia~~l~~~-g~~~~~~~~~~~~~---~--~~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRER-GVEVRVVDLDDFDD---S--PSDLSEYDLLIFGVS 54 (143)
T ss_dssp SSHHHHHHHHHHHHHHHT-TSEEEEEEGGGSCH---H--HHHHCTTSEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHc-CCceeeechhhhhh---h--hhhhhhhceeeEeec
Confidence 455666677777888887 99999998887643 2 233445555555543
No 272
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=43.88 E-value=2.7e+02 Score=28.11 Aligned_cols=110 Identities=7% Similarity=-0.004 Sum_probs=60.4
Q ss_pred CCceeechhhHHHHHH----HHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC
Q psy8699 49 KHRVFNTPLSEQGIVG----FGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV 122 (325)
Q Consensus 49 p~r~~~~gIaE~~~v~----~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 122 (325)
|.+|+..+ -.+.+| .|+|++++. -++++++ -++.. +.....|. .+...++|...+ ++- -.+..
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~EL~-Ta~~~~lpi~~v------V~N-N~~y~ 462 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILL-IGDGSAQLTIQELG-SMLRDKQHPIIL------VLN-NEGYT 462 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEE-EcCcHHHhHHHHHH-HHHHcCCCCEEE------EEe-CCceE
Confidence 45677543 234444 566666653 4667774 67753 44455554 577666665321 111 11111
Q ss_pred ------CCCCCCC--ChhHH-HHHcCCCCc----EEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ------GHGALYH--SQSPE-AYFAHTPGI----KVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ------g~g~th~--~~~d~-~~~~~ip~~----~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+.+..+. ..-|. ++.+.+ ++ .-+.-.+..|+.+.++.+++.++|++|
T Consensus 463 ~i~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 463 VERAIHGAEQRYNDIALWNWTHLPQAL-SLDPQSECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred EEEeecCCCCCcCcCCCCCHHHHHHHc-CCCCccceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 0011110 11132 233333 33 366779999999999999999999999
No 273
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=43.06 E-value=61 Score=26.54 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=62.7
Q ss_pred CCceeech--hhHHHHHHHHHHHhcc-CCeEEEEecccc--cHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-C
Q psy8699 49 KHRVFNTP--LSEQGIVGFGIGLAVS-GATAIAEIQFAD--YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-V 122 (325)
Q Consensus 49 p~r~~~~g--IaE~~~v~~a~GlA~~-G~~p~~~it~~~--F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~ 122 (325)
|.+|+..+ -+=-.+++.|.|++++ .-++++++ -.+ |+.- ...|. .+...+++.. . +++-..... .
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i-~GDG~f~~~-~~el~-ta~~~~~~v~---~---vv~nN~~~~~~ 88 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAI-TGDGSFLMS-LQELA-TAVRYGLPVV---I---VVLNNGGYGMT 88 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEE-EEHHHHHHH-GGGHH-HHHHTTSSEE---E---EEEESSBSHHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEe-cCCcceeec-cchhH-HHhhccceEE---E---EEEeCCcceEe
Confidence 67887722 1333567778888877 35666664 566 4433 44443 4555545432 1 222221111 0
Q ss_pred C-----CCC-C--------CCChhHHHHHcCCCCcEEEeeCCH--HHHHHHHHHhHhCCCcEEE
Q psy8699 123 G-----HGA-L--------YHSQSPEAYFAHTPGIKVVIPRGP--YKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 g-----~g~-t--------h~~~~d~~~~~~ip~~~v~~P~~~--~e~~~~~~~a~~~~~Pv~i 170 (325)
+ .+. + .+..+...+.+.+ |+..+.-.++ +|++..++++++.++|++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 89 GGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred ccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0 111 1 2233344555555 6666665555 9999999999999999998
No 274
>KOG4044|consensus
Probab=42.96 E-value=1.5e+02 Score=25.32 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=60.5
Q ss_pred cCCCCcEEEeeCCHHH---------------HHHHHHHhHhCCCcEEEe--cccccccccccCCCCCCcccCCCce--e-
Q psy8699 138 AHTPGIKVVIPRGPYK---------------AKGLLLSCIKDKDPCIFF--EPKVLYRAAVEDVPEDYYELPLDKA--D- 197 (325)
Q Consensus 138 ~~ip~~~v~~P~~~~e---------------~~~~~~~a~~~~~Pv~i~--~~~~l~~~~~~~~~~~~~~~~~gk~--~- 197 (325)
+-.|.-+++.-||-+| ...+++.+--.+-|+++- ||+++++. ++++..+.....++|- .
T Consensus 10 rl~P~~t~fflCDmQEKFrpai~yf~~iIs~~~rLl~aaril~vP~ivTEqYP~gLG~T-V~eLd~~g~~~~~~KT~FSM 88 (201)
T KOG4044|consen 10 RLNPSSTVFFLCDMQEKFRPAIPYFPSIISVTTRLLAAARILQVPVIVTEQYPEGLGKT-VPELDIEGLKLNLSKTKFSM 88 (201)
T ss_pred ecCCCceEEEEechHhhhcccchhhHHHHHHHHHHHHhhhhhCCcEEeecccccccccc-chhhchhhhcccccccceee
Confidence 3456666776677666 223333333357899997 46666543 2333221111111211 0
Q ss_pred ----E---eee--CCcEEEEEechhHHHHH--HHHHHHHhhcCCcEEEE-ecccccC-CCHHHHHHHHhccCcEEEEecC
Q psy8699 198 ----I---LVA--GTDVTLIGWGTQVHVLR--EVAGLAKEQLGVSCEVI-DLVSILP-WDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 198 ----~---~~~--g~dv~ii~~G~~~~~a~--~A~~~L~~~~gi~~~vi-~~~~l~P-~d~~~l~~~~~~~~~vivvEe~ 264 (325)
+ +++ |.+ +++-+|-..+.|. .|.+.|+ + |+++-|+ |..+-+. .|...-.+-.+..+.++.--|+
T Consensus 89 ~~p~v~~s~~~i~~~k-~VvL~GiEthvCv~qTa~dLl~-r-gl~VhvVaDacSSRs~~DR~~Al~r~rq~G~~lstsEs 165 (201)
T KOG4044|consen 89 VLPPVEDSLKDIFGGK-TVVLFGIETHVCVLQTALDLLE-R-GLNVHVVADACSSRSNQDRDLALERMRQAGANLSTSES 165 (201)
T ss_pred eCchHHHHHHhccCCC-eEEEEecchheehHHHHHHHHh-C-CceEEEEeehhccccchhHHHHHHHHHhcCCcccchHH
Confidence 0 111 222 5666677766654 4666665 4 8998755 3333322 3444333445555665555444
No 275
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=42.67 E-value=2.6e+02 Score=28.61 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
++.+++ |+.-+.-.+..|+...++++++.++|++|
T Consensus 507 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 541 (597)
T PRK08273 507 RFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVL 541 (597)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 444555 77788889999999999999999999999
No 276
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=42.67 E-value=78 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=34.5
Q ss_pred EEEechhH----HHHHHHHHHHHhhcCC--cEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 207 LIGWGTQV----HVLREVAGLAKEQLGV--SCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 207 ii~~G~~~----~~a~~A~~~L~~~~gi--~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|+++|+.. .....+++.|++. .. .+.+++..+. ..+.+...++..+++|+||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~-~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPR-QLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhcc-CCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 66777765 2466777777765 43 3778887774 233333445668888888874
No 277
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=42.52 E-value=1.8e+02 Score=29.86 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcc------CCeEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCC--
Q psy8699 61 GIVGFGIGLAVS------GATAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALY-- 128 (325)
Q Consensus 61 ~~v~~a~GlA~~------G~~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th-- 128 (325)
..+++|.|+|++ .-++++++ .++.- ...++.+. .++..+. ++.. ++.....+..+. +...
T Consensus 121 ~gl~~AvG~A~a~~~~~~~~~~v~~i-~GDG~l~eG~~~Eal~-~A~~~~~---nli~---IvdnN~~~i~~~~~~~~~~ 192 (580)
T PRK05444 121 TSISAALGMAKARDLKGGEDRKVVAV-IGDGALTGGMAFEALN-NAGDLKS---DLIV---ILNDNEMSISPNVGALSNY 192 (580)
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEE-EcccccccCHHHHHHH-HHHhhCC---CEEE---EEECCCCcCCCcchhhhhh
Confidence 345667777654 13566664 66653 25666664 4554442 2211 222221111111 1111
Q ss_pred CChhHH-HHHcCCCCcEEE---eeCCHHHHHHHHHHhHhCCCcEEEeccc
Q psy8699 129 HSQSPE-AYFAHTPGIKVV---IPRGPYKAKGLLLSCIKDKDPCIFFEPK 174 (325)
Q Consensus 129 ~~~~d~-~~~~~ip~~~v~---~P~~~~e~~~~~~~a~~~~~Pv~i~~~~ 174 (325)
....+. ..++++ |+.++ ...|..++..+++.+.+.++|++|-...
T Consensus 193 ~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T 241 (580)
T PRK05444 193 LARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVT 241 (580)
T ss_pred hccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 112222 345554 66555 4488999999999888888999996554
No 278
>PRK12474 hypothetical protein; Provisional
Probab=41.87 E-value=2.7e+02 Score=27.91 Aligned_cols=112 Identities=12% Similarity=0.028 Sum_probs=61.8
Q ss_pred CCceeechhhH-HHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC---
Q psy8699 49 KHRVFNTPLSE-QGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--- 122 (325)
Q Consensus 49 p~r~~~~gIaE-~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--- 122 (325)
|.+|+..+-.= -..+..|+|++++ .-+++++| -++.. +.....|. .+...++|... + +..-.+..
T Consensus 380 p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i-~GDG~f~m~~qEL~-Ta~r~~lpv~i------i-V~NN~~y~~i~ 450 (518)
T PRK12474 380 PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCP-QGDGGAAYTMQALW-TMARENLDVTV------V-IFANRSYAILN 450 (518)
T ss_pred CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEE-EcCchhcchHHHHH-HHHHHCCCcEE------E-EEcCCcchHHH
Confidence 67788653111 1244567777766 34666674 67743 44444443 56666665431 1 11111110
Q ss_pred ------CC---CC-----C--CCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 ------GH---GA-----L--YHS-QSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 ------g~---g~-----t--h~~-~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+. +. + +.. .+...+.+.+ |..-..-.++.|+..+++++++.++|.+|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 451 GELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVEASRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 00 00 0 111 1222344444 66777789999999999999999999988
No 279
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=41.76 E-value=1.7e+02 Score=22.78 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=59.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcC-CcEEEEecccccCCCH--HHHHHHHhc---cCcEEEEecCCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLG-VSCEVIDLVSILPWDR--ETVFQSARK---TGRVIIAHEAPLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~g-i~~~vi~~~~l~P~d~--~~l~~~~~~---~~~vivvEe~~~~gglg~~v~~~ 277 (325)
.++|++.|....-.+++++.+-.+ . -++..+++..=..++. +.+.+.+++ .+.++++=+= .||--...+..
T Consensus 1 giii~sHG~~A~g~~~~~~~i~G~-~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl--~ggsp~n~a~~ 77 (116)
T PF03610_consen 1 GIIIASHGSLAEGLLESAEMILGE-DQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDL--GGGSPFNEAAR 77 (116)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHTS-TCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESS--TTSHHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHcCC-CcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeC--CCCccchHHHH
Confidence 378999999999999999987532 1 2577776654333322 345666643 4677777663 35544433333
Q ss_pred HHhhccccCCCCeEEEcccCCCCc-cc-ccccCCCCHHHHHHHH
Q psy8699 278 IQDKCFLSLEAPIRRVTGYDTPFP-HI-FEPFYIPDKWRCLEAV 319 (325)
Q Consensus 278 l~e~~~~~~~~~v~~~~g~~~~~~-~~-~~~~~l~~~~~I~~~i 319 (325)
.... ...+..++|.+-|.- +. ...... +.+.+++.|
T Consensus 78 ~~~~-----~~~~~vi~G~Nlpmlle~~~~~~~~-~~~el~~~i 115 (116)
T PF03610_consen 78 LLLD-----KPNIRVISGVNLPMLLEALMARESM-SLEELIEEI 115 (116)
T ss_dssp HHCT-----STTEEEEES--HHHHHHHHHHHTCH-CHHHHHHHH
T ss_pred Hhcc-----CCCEEEEecccHHHHHHHHHHHHhc-CHHHHHHhc
Confidence 3222 123556677764432 22 223344 667776655
No 280
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=41.52 E-value=2.1e+02 Score=29.14 Aligned_cols=112 Identities=11% Similarity=-0.041 Sum_probs=62.4
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-S-EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-a-E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- . =-..+..|+|++++. -++++++ -++.. +.....|. .+...+++.. +++..-.+..
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~m~~~eL~-Ta~~~~l~i~-------ivV~NN~~yg~i 481 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDL-DGDGSFLMTGTNLA-TAVDEHIPVI-------SVIFDNRTLGLV 481 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEE-EccchHhcchHHHH-HHHHhCCCeE-------EEEEECCchHHH
Confidence 677776421 0 012446777777663 4666664 66642 33334443 4665555442 1222211111
Q ss_pred C------CCC----CC--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 G------HGA----LY--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 g------~g~----th--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. .+. +. ...+..++.+++ |+.-+...+..|+...++++++.++|.+|
T Consensus 482 ~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 540 (572)
T PRK06456 482 RQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVI 540 (572)
T ss_pred HHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 011 11 112233455555 77777889999999999999999999998
No 281
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=41.23 E-value=2.3e+02 Score=24.29 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=47.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccC--CCHHHHHHHHhcc--CcEEEE-ec-CCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILP--WDRETVFQSARKT--GRVIIA-HE-APLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P--~d~~~l~~~~~~~--~~vivv-Ee-~~~~gglg~~v~~~ 277 (325)
+++||+-|-.+ |.+|++...+ .+..+-|+...=+| +.-+.|.++++++ +.|+|+ |+ ...--|.|++...+
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~--~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~ 76 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK--NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEY 76 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH--HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHH
Confidence 47888888753 5566666655 35666677766555 5557788888764 566655 44 32333889988888
Q ss_pred HHh
Q psy8699 278 IQD 280 (325)
Q Consensus 278 l~e 280 (325)
+..
T Consensus 77 v~~ 79 (180)
T PF14097_consen 77 VAN 79 (180)
T ss_pred HHc
Confidence 864
No 282
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=41.02 E-value=74 Score=29.46 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=18.8
Q ss_pred CCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++.+-+.+ ++=.+++.+.+.++.++...|+-+=++
T Consensus 130 ~~pvilYn-~~g~~l~~~~~~~La~~~~nvvgiKds 164 (296)
T TIGR03249 130 DLGVIVYQ-RDNAVLNADTLERLADRCPNLVGFKDG 164 (296)
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 44555555 333456666666655445556655543
No 283
>PLN02409 serine--glyoxylate aminotransaminase
Probab=40.68 E-value=1e+02 Score=29.72 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=12.2
Q ss_pred CCcEEEEecccccCCCHHHHHHHHh
Q psy8699 229 GVSCEVIDLVSILPWDRETVFQSAR 253 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~l~~~~~ 253 (325)
|.++.++....=..+|.+.+.+.++
T Consensus 107 g~~v~~v~~~~~~~~~~~~l~~~l~ 131 (401)
T PLN02409 107 NFDVDVVESPWGQGADLDILKSKLR 131 (401)
T ss_pred CCceEEEECCCCCCCCHHHHHHHHh
Confidence 5555555544322345555555544
No 284
>PTZ00089 transketolase; Provisional
Probab=40.67 E-value=3.5e+02 Score=28.30 Aligned_cols=89 Identities=10% Similarity=-0.062 Sum_probs=51.2
Q ss_pred eEEEEeccccc--H-HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCC-ChhH-HHHHcCCCCcEEEeeC
Q psy8699 75 TAIAEIQFADY--I-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYH-SQSP-EAYFAHTPGIKVVIPR 149 (325)
Q Consensus 75 ~p~~~it~~~F--~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~-~~~d-~~~~~~ip~~~v~~P~ 149 (325)
++++. .++. . ..++|-+. .++..++++. ++ ++... +..-++.++- ..++ ...++++ ||.++.+.
T Consensus 150 ~v~~v--~GDG~l~eG~~~EAl~-~A~~~~L~nL-i~----i~d~N--~~~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~ 218 (661)
T PTZ00089 150 YVYVI--CGDGCLQEGVSQEALS-LAGHLGLEKL-IV----LYDDN--KITIDGNTDLSFTEDVEKKYEAY-GWHVIEVD 218 (661)
T ss_pred EEEEE--ECccchhhHHHHHHHH-HHHHhCCCCE-EE----EEECC--CcccccCcccccCccHHHHHHhc-CCcEEEeC
Confidence 34444 4554 3 57777774 5776566542 11 11122 2211232221 1233 3577777 99999984
Q ss_pred ----CHHHHHHHHHHhHhC-CCcEEEeccc
Q psy8699 150 ----GPYKAKGLLLSCIKD-KDPCIFFEPK 174 (325)
Q Consensus 150 ----~~~e~~~~~~~a~~~-~~Pv~i~~~~ 174 (325)
|..++..+++.+.+. ++|++|....
T Consensus 219 dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T 248 (661)
T PTZ00089 219 NGNTDFDGLRKAIEEAKKSKGKPKLIIVKT 248 (661)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 677788888877765 6899997654
No 285
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.49 E-value=1e+02 Score=26.00 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=36.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHH--HHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET--VFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~--l~~~~~~~~ 256 (325)
+++++.|+.-..++-+++.|.+. |+++.|+-+.-..+++.+. -.+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANR-GYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHT-TCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHC-CCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 56778889999999999999888 9999996665555555543 233444444
No 286
>PLN02275 transferase, transferring glycosyl groups
Probab=40.08 E-value=2.1e+02 Score=27.01 Aligned_cols=107 Identities=9% Similarity=0.000 Sum_probs=59.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhh
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~ 281 (325)
+...+|++.|.......+.++.+ |++= ++-+.. .++.+.+.+.+...+-.++.-.....-|++..+.++++-
T Consensus 261 ~i~l~ivG~G~~~~~l~~~~~~~----~l~~-v~~~~~--~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~- 332 (371)
T PLN02275 261 RLLFIITGKGPQKAMYEEKISRL----NLRH-VAFRTM--WLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC- 332 (371)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHc----CCCc-eEEEcC--CCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC-
Confidence 34677888888766555444433 5432 221121 246777878787777544322222223688888888763
Q ss_pred ccccCCCCeEEEcccCCCCcccccc--cC--CCCHHHHHHHHHHHh
Q psy8699 282 CFLSLEAPIRRVTGYDTPFPHIFEP--FY--IPDKWRCLEAVKQIT 323 (325)
Q Consensus 282 ~~~~~~~~v~~~~g~~~~~~~~~~~--~~--l~~~~~I~~~i~~~~ 323 (325)
+.|+.-. .. +...++.++ .| .++++.+++++.+++
T Consensus 333 -----G~PVVa~-~~-gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 333 -----GLPVCAV-SY-SCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred -----CCCEEEe-cC-CChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 3566432 21 123333322 12 357889999988874
No 287
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=40.03 E-value=97 Score=29.48 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=18.0
Q ss_pred CCCcEEEeeCCHHHH----HHHHHHhHhCCCcEEEec
Q psy8699 140 TPGIKVVIPRGPYKA----KGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 140 ip~~~v~~P~~~~e~----~~~~~~a~~~~~Pv~i~~ 172 (325)
+|.+.| .-.|..++ ..+++.+.+.++|++|-.
T Consensus 208 ~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 208 IPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred CCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 555544 22343333 445555555689999944
No 288
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.03 E-value=69 Score=22.91 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKC 282 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~ 282 (325)
.+.+.|++|-+.|++. |++++++ |.|.+. -...+-.+-++... -..+...+.+++
T Consensus 9 ~st~~a~~~ek~lk~~-gi~~~li------P~P~~i----~~~CG~al~~~~~d-----~~~i~~~l~~~~ 63 (73)
T PF11823_consen 9 PSTHDAMKAEKLLKKN-GIPVRLI------PTPREI----SAGCGLALRFEPED-----LEKIKEILEENG 63 (73)
T ss_pred CCHHHHHHHHHHHHHC-CCcEEEe------CCChhc----cCCCCEEEEEChhh-----HHHHHHHHHHCC
Confidence 4567788899999998 9999988 667552 12345556665532 344555555543
No 289
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=39.91 E-value=2.5e+02 Score=28.65 Aligned_cols=113 Identities=8% Similarity=-0.007 Sum_probs=60.8
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL-SEQ-GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI-aE~-~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- .=. ..++.|.|++++. -+|++++ .++.. +.....|. .+...++|... +++-. .+..
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i-~GDG~f~~~~~el~-Ta~~~~lpv~i------vV~NN-~~y~~~ 495 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGF-AGDGAWGISMNEVM-TAVRHNWPVTA------VVFRN-YQWGAE 495 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEE-EcCchHhccHHHHH-HHHHhCCCeEE------EEEeC-chhHHH
Confidence 677886431 111 2566777877774 4677774 67742 33334444 46666665421 11111 1110
Q ss_pred --------CC--CCCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEEe
Q psy8699 123 --------GH--GALYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKD---KDPCIFF 171 (325)
Q Consensus 123 --------g~--g~th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~---~~Pv~i~ 171 (325)
+. .++.. ..-|. ++.+.+ |..-..-.++.|+...++.+++. ++|++|-
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 496 KKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 00 01111 11133 344444 55555668999999999999975 5899983
No 290
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=39.89 E-value=24 Score=27.57 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=25.0
Q ss_pred eCCcEEEEEechhHHH-HHHHHHHHHhhcCCcEEEEecc
Q psy8699 201 AGTDVTLIGWGTQVHV-LREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
+..+++||++|..... -.+..+.|+++ ||.+++.+-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~-GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKK-GIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTT-T-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHc-CCeEEEECHH
Confidence 4689999999987543 44566778888 9998887543
No 291
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=39.36 E-value=62 Score=25.41 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
-+.+..|.+|.+.|++. |+...++++.. .|...+.+.+.++..+
T Consensus 6 ~~~C~~c~ka~~~L~~~-~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 6 SPNCTTCKKARRWLEAN-GIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHc-CCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 35677899999999998 99999999865 6777888877777654
No 292
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.16 E-value=1.9e+02 Score=29.78 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+- +=-..+..|+|++++. -|++++| -++.. +.....|. .+...+++... ++..-.+..
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDG~f~m~~~EL~-Ta~r~~lpvi~-------vV~NN~~y~~i 490 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDI-AGDASIQMCIQEMS-TAVQYNLPVKI-------FILNNQYMGMV 490 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEE-EcCchhhccHHHHH-HHHHhCCCeEE-------EEEeCCccHHH
Confidence 678886531 1113456777777763 5677775 67742 33333443 56766665431 122111211
Q ss_pred --------CC--CCCCC-ChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEec
Q psy8699 123 --------GH--GALYH-SQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 123 --------g~--g~th~-~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~ 172 (325)
+. ..++. ..-|. .+.+.+ |+.-+.-.++.|+..+++.++..++|.+|-.
T Consensus 491 ~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 551 (595)
T PRK09107 491 RQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFDC 551 (595)
T ss_pred HHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 11111 11233 455555 7777788999999999999999999999943
No 293
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=38.98 E-value=72 Score=26.19 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=32.6
Q ss_pred EEEEechhHH----HHHHHHHHHHhhcCC--cEEEEecccccCCCHHHHHHHHh--ccCcEEEEec
Q psy8699 206 TLIGWGTQVH----VLREVAGLAKEQLGV--SCEVIDLVSILPWDRETVFQSAR--KTGRVIIAHE 263 (325)
Q Consensus 206 ~ii~~G~~~~----~a~~A~~~L~~~~gi--~~~vi~~~~l~P~d~~~l~~~~~--~~~~vivvEe 263 (325)
+|+++|+... .-..+++.|++. .. .+.+++..+. |++.. ..++ +++++|+||.
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~-~~~~~v~v~d~gt~-~~~~~---~~~~~~~~d~viivDA 62 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAA-PKEENWVVINAGTV-PENFT---VAIRELRPTHILIVDA 62 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhc-cCCCCEEEEECCCC-hHHHH---HHHHhcCCCEEEEEEC
Confidence 5777887662 456677777654 22 4777887775 43322 2233 4678888876
No 294
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.71 E-value=1.4e+02 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=38.1
Q ss_pred EEEEEechhH--HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc-----CcEEEEecC
Q psy8699 205 VTLIGWGTQV--HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT-----GRVIIAHEA 264 (325)
Q Consensus 205 v~ii~~G~~~--~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~-----~~vivvEe~ 264 (325)
+++++++... ....++++.|+++ ||.+.+|.+-+..+= .+.|...++.. .+++.+-.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~~~~-~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEIDDN-TEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCCC-HHHHHHHHHHhcCCCCceEEEeCCC
Confidence 5666666333 3566889999998 999999999987432 23343333332 466777664
No 295
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=38.50 E-value=2.9e+02 Score=28.24 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=62.7
Q ss_pred CCceeech-hhH-HHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--
Q psy8699 49 KHRVFNTP-LSE-QGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-- 122 (325)
Q Consensus 49 p~r~~~~g-IaE-~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-- 122 (325)
|.+|+..+ ..= -..++.|+|++++- -++++++ .++.. +.....|. .+...+++... +++-. .+..
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i-~GDG~f~m~~~eL~-Ta~~~~l~~~~------vV~NN-~~y~~i 490 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI-SGDASFQMNLQELG-TIAQYNLPIKI------IIINN-KWQGMV 490 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEE-EcchhhhhhHHHHH-HHHHhCCCeEE------EEEEC-CcchHH
Confidence 67787532 111 12556777877763 4666665 56642 33333443 56666665421 12211 1110
Q ss_pred --------CC--CCC-C--CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 --------GH--GAL-Y--HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 --------g~--g~t-h--~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+. ... . +..+...+.+++ |+.-..-.+.+|+...++.+++.++|.+|-
T Consensus 491 ~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 551 (585)
T CHL00099 491 RQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLID 551 (585)
T ss_pred HHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 000 0 112223455555 667777899999999999999999999993
No 296
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.45 E-value=28 Score=32.80 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHhcCCCEEEEcC
Q psy8699 6 YWTGFFQSSPSQLLSSQGGVLFGE 29 (325)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~vv~~~~ 29 (325)
+..+|.+||...+++||||+++|+
T Consensus 183 dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 183 DTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEec
Confidence 346999999999999999999987
No 297
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=38.26 E-value=1.5e+02 Score=23.39 Aligned_cols=68 Identities=19% Similarity=0.091 Sum_probs=46.2
Q ss_pred EEEEEechhHH-----HHHHHHHHHHhhcCCcEEEEecc-cccCCCHHHHHHHHhccC-cEEEEecCCcCCChHHHH
Q psy8699 205 VTLIGWGTQVH-----VLREVAGLAKEQLGVSCEVIDLV-SILPWDRETVFQSARKTG-RVIIAHEAPLTSGFGAEL 274 (325)
Q Consensus 205 v~ii~~G~~~~-----~a~~A~~~L~~~~gi~~~vi~~~-~l~P~d~~~l~~~~~~~~-~vivvEe~~~~gglg~~v 274 (325)
-.++++|.... ...+-.+.|.+. |..+=+|... .+..+|.+.+ +.+.+.+ .++.+..+....-+...+
T Consensus 44 Elvlttg~~~~~~~~~~~~~~i~~L~~~-~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f~~I~~~v 118 (123)
T PF07905_consen 44 ELVLTTGYALRDDDEEELREFIRELAEK-GAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPFSDITREV 118 (123)
T ss_pred eEEEECCcccCCCCHHHHHHHHHHHHHC-CCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCHHHHHHHH
Confidence 35777776543 356778888888 8888778776 7888986654 6666655 788888876544444333
No 298
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=37.81 E-value=1.4e+02 Score=24.96 Aligned_cols=65 Identities=14% Similarity=0.307 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccccC-C---------C--HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSILP-W---------D--RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~P-~---------d--~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
...+..+++.+.++.|.+++++++.-+.| + + .+.+.+.+...+.+|++=-. ++|++...+-.++.
T Consensus 16 ~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~-Y~~s~~~~LKn~lD 92 (174)
T TIGR03566 16 LALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPV-YRGSYTGLFKHLFD 92 (174)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCc-CcCcCcHHHHHHHH
Confidence 33444555556543388898998765421 1 2 13466667777877777555 56888887777764
No 299
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.64 E-value=1.5e+02 Score=23.65 Aligned_cols=58 Identities=16% Similarity=0.016 Sum_probs=39.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEe
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAH 262 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvE 262 (325)
+-..+.++++|.....|.+.+-.+.+-.++.+..++.....--+... +.+...+|++-
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~----~~~~~~vi~is 69 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIAL----VDEGTPVIFLA 69 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhh----ccCCCcEEEEe
Confidence 44679999999999999999888877623677766655554433332 34444566664
No 300
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.57 E-value=1.8e+02 Score=22.00 Aligned_cols=89 Identities=10% Similarity=0.166 Sum_probs=44.8
Q ss_pred EEechhHHH-HHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccC
Q psy8699 208 IGWGTQVHV-LREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSL 286 (325)
Q Consensus 208 i~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~ 286 (325)
.+.|..+.. +.+.-+.++++ |++++|...+. ..+.+...+++ +|++-.+.. -.-..+.+... ..
T Consensus 6 Cg~G~sTS~~~~ki~~~~~~~-~~~~~v~~~~~------~~~~~~~~~~D-iil~~Pqv~--~~~~~i~~~~~-----~~ 70 (96)
T cd05564 6 CSAGMSTSILVKKMKKAAEKR-GIDAEIEAVPE------SELEEYIDDAD-VVLLGPQVR--YMLDEVKKKAA-----EY 70 (96)
T ss_pred cCCCchHHHHHHHHHHHHHHC-CCceEEEEecH------HHHHHhcCCCC-EEEEChhHH--HHHHHHHHHhc-----cC
Confidence 334434443 44444556666 99987665543 33444455565 555544421 11112221111 13
Q ss_pred CCCeEEEcccCCCCcccccccCCCCHHHHHHHHH
Q psy8699 287 EAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 287 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~ 320 (325)
..|+..+ + ...|+.++.+.|++.+.
T Consensus 71 ~~pv~~I---~------~~~Y~~~dg~~il~~~~ 95 (96)
T cd05564 71 GIPVAVI---D------MMDYGMMNGEKVLKQAL 95 (96)
T ss_pred CCcEEEc---C------hHhcccCCHHHHHHHHh
Confidence 4566544 1 13456679999988775
No 301
>TIGR03586 PseI pseudaminic acid synthase.
Probab=37.34 E-value=3.7e+02 Score=25.52 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=45.5
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhhcCC-cEEEEecccccCCCHHHH----HHHHh-ccCcEEEEecCCcCCChHHHHHH
Q psy8699 204 DVTLIGWG-TQVHVLREVAGLAKEQLGV-SCEVIDLVSILPWDRETV----FQSAR-KTGRVIIAHEAPLTSGFGAELAA 276 (325)
Q Consensus 204 dv~ii~~G-~~~~~a~~A~~~L~~~~gi-~~~vi~~~~l~P~d~~~l----~~~~~-~~~~vivvEe~~~~gglg~~v~~ 276 (325)
+=+|+++| ++..+..+|++.+++. |. ++.++++.+-.|-+.+.+ ...++ .++..|-+=+|. .|....+++
T Consensus 135 kPvilstG~~t~~Ei~~Av~~i~~~-g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt--~G~~~~~aA 211 (327)
T TIGR03586 135 KPIIMSTGIATLEEIQEAVEACREA-GCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHT--LGILAPVAA 211 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHC-CCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCC--CchHHHHHH
Confidence 45678888 4667899999999887 77 688888877777666531 22333 355444244574 455544444
Q ss_pred H
Q psy8699 277 S 277 (325)
Q Consensus 277 ~ 277 (325)
.
T Consensus 212 v 212 (327)
T TIGR03586 212 V 212 (327)
T ss_pred H
Confidence 4
No 302
>PRK10329 glutaredoxin-like protein; Provisional
Probab=36.65 E-value=1.6e+02 Score=21.48 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=38.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-c--cCcEEEEecCCcCCChH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-K--TGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~--~~~vivvEe~~~~gglg 271 (325)
+++|.+. .....|..|.+.|+++ ||..+.+++.. +.+....... . .=.++++++... .||.
T Consensus 2 ~v~lYt~-~~Cp~C~~ak~~L~~~-gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~-~Gf~ 65 (81)
T PRK10329 2 RITIYTR-NDCVQCHATKRAMESR-GFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSW-SGFR 65 (81)
T ss_pred EEEEEeC-CCCHhHHHHHHHHHHC-CCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEE-ecCC
Confidence 3555555 5568899999999998 99999999986 2332222211 2 125677776544 4553
No 303
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.48 E-value=1.8e+02 Score=22.58 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=49.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhcc
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCF 283 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~ 283 (325)
++.+++.|.....|......|..- |..+..++-... +. ..+ ..+.+.+-+|++-. .|-..++.+.+....
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~--~~-~~~-~~~~~~d~vi~iS~----sG~t~~~~~~~~~a~- 71 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSST-GTPAFFLHPTEA--LH-GDL-GMVTPGDVVIAISN----SGETDELLNLLPHLK- 71 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcC-CCceEEcccchh--hc-ccc-CcCCCCCEEEEEeC----CCCCHHHHHHHHHHH-
Confidence 578999999999999999988776 877766643211 11 111 22344556666632 344555555554322
Q ss_pred ccCCCCeEEEcccC
Q psy8699 284 LSLEAPIRRVTGYD 297 (325)
Q Consensus 284 ~~~~~~v~~~~g~~ 297 (325)
..+.++.-++..+
T Consensus 72 -~~g~~vi~iT~~~ 84 (128)
T cd05014 72 -RRGAPIIAITGNP 84 (128)
T ss_pred -HCCCeEEEEeCCC
Confidence 1246777776543
No 304
>PHA03050 glutaredoxin; Provisional
Probab=36.15 E-value=1.8e+02 Score=22.62 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCC---cEEEEecccccCCCH---HHHHHHHhc-cCcEEEEecCCcCCChHHHH
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGV---SCEVIDLVSILPWDR---ETVFQSARK-TGRVIIAHEAPLTSGFGAEL 274 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi---~~~vi~~~~l~P~d~---~~l~~~~~~-~~~vivvEe~~~~gglg~~v 274 (325)
..+++|++. +....|.+|.+.|++. |+ ..+++++....+ +. +.+.+.-.+ +=..|++... ..||+....
T Consensus 12 ~~~V~vys~-~~CPyC~~ak~~L~~~-~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~-~iGG~ddl~ 87 (108)
T PHA03050 12 NNKVTIFVK-FTCPFCRNALDILNKF-SFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKT-SIGGYSDLL 87 (108)
T ss_pred cCCEEEEEC-CCChHHHHHHHHHHHc-CCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCE-EEeChHHHH
Confidence 456777777 5678899999999887 98 788898885322 22 223332222 2256777665 468886654
Q ss_pred H
Q psy8699 275 A 275 (325)
Q Consensus 275 ~ 275 (325)
+
T Consensus 88 ~ 88 (108)
T PHA03050 88 E 88 (108)
T ss_pred H
Confidence 3
No 305
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=36.00 E-value=1.6e+02 Score=25.36 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecccccCC----------CHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 215 HVLREVAGLAKEQLGVSCEVIDLVSILPW----------DRETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 215 ~~a~~A~~~L~~~~gi~~~vi~~~~l~P~----------d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
..+..+++.++++ |.+++++++..+.+- +.+.+.+.++..+.+|++=-- +.|++...+-.++
T Consensus 18 ~l~~~~~~~l~~~-g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~-Y~~s~pg~LKn~i 89 (191)
T PRK10569 18 ALLEYAREWLNGL-GVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPV-YKASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHhC-CCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCc-cCCCCCHHHHHHH
Confidence 3455566678877 999999998764331 223455667778888887665 5678777777666
No 306
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=35.93 E-value=76 Score=26.05 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEc---
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVT--- 294 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~--- 294 (325)
-.|++.|++. |++.. -..-+++..+. +...+.|+++++++. ..+.+.... ...++..+.
T Consensus 47 ~~a~~~l~~~-Gid~~---~h~s~~lt~~~----~~~~DlIl~M~~~~~-----~~l~~~~p~-----~~~k~~~l~~~~ 108 (144)
T PRK11391 47 ATAADVAANH-GVSLE---GHAGRKLTAEM----ARNYDLILAMESEHI-----AQVTAIAPE-----VRGKTMLFGQWL 108 (144)
T ss_pred HHHHHHHHHc-CCCcC---CCccCcCCHHH----HhhCCEEEECCHHHH-----HHHHHHCCC-----CcCeEEehhHhC
Confidence 3566677776 88753 23335555444 346788999987542 122111110 112232221
Q ss_pred ---ccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 295 ---GYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 295 ---g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
.+++||..-.+.|.- .-+.|.+++..+++
T Consensus 109 ~~~~I~DPy~~~~~~f~~-~~~~I~~~i~~ll~ 140 (144)
T PRK11391 109 EQKEIPDPYRKSQDAFEH-VYGMLERASQEWAK 140 (144)
T ss_pred CCCCCCCCccCCHHHHHH-HHHHHHHHHHHHHH
Confidence 455666544444444 56777777777654
No 307
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=35.37 E-value=1.7e+02 Score=24.48 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecccccC--C--------CHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSILP--W--------DRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P--~--------d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
+...+..+++.+++. |.+++++++.-+.. + +.+.+.+.++..+.+|++=-. +.+++...+..++.
T Consensus 15 t~~l~~~~~~~l~~~-~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~-Y~~sip~~LK~~iD 89 (171)
T TIGR03567 15 SSALLRHVREALQEQ-GVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPV-YKASYSGVLKALLD 89 (171)
T ss_pred HHHHHHHHHHHHHHC-CCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCc-ccCCCCHHHHHHHH
Confidence 344555666777776 88888898765321 1 113456667777887777665 56888877777663
No 308
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=35.22 E-value=1.4e+02 Score=23.94 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=46.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhhc---CCcEEEEecccc--------------cCCCHHHHHHHHh-ccCcEEEEecCCc
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQL---GVSCEVIDLVSI--------------LPWDRETVFQSAR-KTGRVIIAHEAPL 266 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~---gi~~~vi~~~~l--------------~P~d~~~l~~~~~-~~~~vivvEe~~~ 266 (325)
+++++.||....+.++.+.+.++. -=+..| ...++ .|-..+.|.+... ++++|+|+-=+..
T Consensus 3 illv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V-~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~ 81 (127)
T cd03412 3 ILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEV-RWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII 81 (127)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeE-EEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence 789999999887766655443321 112222 22222 4666788877655 4678888877877
Q ss_pred CCChHHHHHHHHHh
Q psy8699 267 TSGFGAELAASIQD 280 (325)
Q Consensus 267 ~gglg~~v~~~l~e 280 (325)
.|.-...+.+.+.+
T Consensus 82 ~G~e~~di~~~v~~ 95 (127)
T cd03412 82 PGEEYEKLKREVDA 95 (127)
T ss_pred CcHHHHHHHHHHHH
Confidence 77666666666654
No 309
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=35.14 E-value=1.9e+02 Score=27.66 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=69.1
Q ss_pred cEEEeeCCHHHHHHHHHHhHhCCCcEEEecccccccccccCCCCCCcccCCCceeEee-eCCcEEEEEechhHHHHHHHH
Q psy8699 143 IKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILV-AGTDVTLIGWGTQVHVLREVA 221 (325)
Q Consensus 143 ~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~-~g~dv~ii~~G~~~~~a~~A~ 221 (325)
--|++-|..+-+...--.|-...-|..|..|+.. |. -|..-+| -|+ -++-+|.....+.+++
T Consensus 75 ~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~t-----p~----------~Kv~a~r~~Ga--eVil~g~~~dda~~~a 137 (347)
T COG1171 75 AGVIAASAGNHAQGVAYAAKRLGIKATIVMPETT-----PK----------IKVDATRGYGA--EVILHGDNFDDAYAAA 137 (347)
T ss_pred CceEEecCCcHHHHHHHHHHHhCCCEEEEecCCC-----cH----------HHHHHHHhcCC--EEEEECCCHHHHHHHH
Confidence 3477778888887776666677778877666421 11 1111111 244 4566788889999999
Q ss_pred HHHHhhcCCcEEEEecccccCCCHHH--------HHHHHhccC---cEEEEecCCcCCChHHHHHHHHHhh
Q psy8699 222 GLAKEQLGVSCEVIDLVSILPWDRET--------VFQSARKTG---RVIIAHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 222 ~~L~~~~gi~~~vi~~~~l~P~d~~~--------l~~~~~~~~---~vivvEe~~~~gglg~~v~~~l~e~ 281 (325)
++|.+++| +..+-|||... -.+.++... ..|+|-=. -|||-+-++.++...
T Consensus 138 ~~~a~~~G-------~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvG--GGGLisGia~~~k~~ 199 (347)
T COG1171 138 EELAEEEG-------LTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVG--GGGLISGIATALKAL 199 (347)
T ss_pred HHHHHHcC-------CEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecC--ccHHHHHHHHHHHHh
Confidence 98877743 45567887641 123333321 34666444 278888888887654
No 310
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=35.13 E-value=30 Score=27.46 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=26.8
Q ss_pred eeCCcEEEEEechhHH-HHHHHHHHHHhhcCCcEEEEec
Q psy8699 200 VAGTDVTLIGWGTQVH-VLREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 200 ~~g~dv~ii~~G~~~~-~a~~A~~~L~~~~gi~~~vi~~ 237 (325)
.+..+++||++|.... .--+..+.|+++ ||.+++.+-
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~-gi~vevm~T 89 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKL-GIAVEVVDT 89 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHc-CCEEEEECH
Confidence 3467899999998643 334556778887 999988754
No 311
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=34.52 E-value=2.9e+02 Score=26.61 Aligned_cols=107 Identities=9% Similarity=-0.018 Sum_probs=57.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhc
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKC 282 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~ 282 (325)
....|++.|.......+.++ +. |++ .++-+. ..++.+.+.+.+...+-.+..-.....-|++..+.++++-
T Consensus 270 i~l~ivG~G~~~~~l~~~~~---~~-~l~-~~~~~~--g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~-- 340 (415)
T cd03816 270 LLCIITGKGPLKEKYLERIK---EL-KLK-KVTIRT--PWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGC-- 340 (415)
T ss_pred EEEEEEecCccHHHHHHHHH---Hc-CCC-cEEEEc--CcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHc--
Confidence 35566677765554444443 22 554 222221 2346787888887777544333322223578888887752
Q ss_pred cccCCCCeEEEcccCCCCcccccc--cC--CCCHHHHHHHHHHHhh
Q psy8699 283 FLSLEAPIRRVTGYDTPFPHIFEP--FY--IPDKWRCLEAVKQITR 324 (325)
Q Consensus 283 ~~~~~~~v~~~~g~~~~~~~~~~~--~~--l~~~~~I~~~i~~~~~ 324 (325)
+.|+.-. ..+ ..+++.++ .| ..+++.+++++.+++.
T Consensus 341 ----G~PVI~s-~~~-~~~eiv~~~~~G~lv~d~~~la~~i~~ll~ 380 (415)
T cd03816 341 ----GLPVCAL-DFK-CIDELVKHGENGLVFGDSEELAEQLIDLLS 380 (415)
T ss_pred ----CCCEEEe-CCC-CHHHHhcCCCCEEEECCHHHHHHHHHHHHh
Confidence 3566432 211 22333322 12 1389999999988764
No 312
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=33.78 E-value=1.1e+02 Score=27.05 Aligned_cols=46 Identities=20% Similarity=0.042 Sum_probs=38.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS 251 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~ 251 (325)
+++.+.|+.-.-.+-|++.|... |.+++|+-+.--++...+..+..
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~-G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAA-GYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhC-CCceEEEEeCCCCCccHHHHHHH
Confidence 56777888999999999999998 99999999888887777765554
No 313
>PLN02573 pyruvate decarboxylase
Probab=33.24 E-value=3.4e+02 Score=27.78 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=56.4
Q ss_pred HHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCccC--C--CC---CCCCChh
Q psy8699 62 IVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV--G--HG---ALYHSQS 132 (325)
Q Consensus 62 ~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--g--~g---~th~~~~ 132 (325)
.+..|+|++++ .-|++++| -++.. +.....|. .+...+++... +|+.. .+.. . .+ ...+..+
T Consensus 433 glpaaiGa~lA~p~r~vv~i-~GDG~f~m~~~EL~-Ta~r~~lpvv~------vV~NN-~~yg~~~~~~~~~~~~~~~~d 503 (578)
T PLN02573 433 SVGATLGYAQAAPDKRVIAC-IGDGSFQVTAQDVS-TMIRCGQKSII------FLINN-GGYTIEVEIHDGPYNVIKNWN 503 (578)
T ss_pred hhhHHHHHHHhCCCCceEEE-EeccHHHhHHHHHH-HHHHcCCCCEE------EEEeC-CceeEEEeecccCccccCCCC
Confidence 34466676665 34666664 67743 44445554 57766666532 22221 1111 0 00 1111222
Q ss_pred HHHHHcCCC---C-cEEEeeCCHHHHHHHHHHhHh--CCCcEEE
Q psy8699 133 PEAYFAHTP---G-IKVVIPRGPYKAKGLLLSCIK--DKDPCIF 170 (325)
Q Consensus 133 d~~~~~~ip---~-~~v~~P~~~~e~~~~~~~a~~--~~~Pv~i 170 (325)
..++.+.+- + +.-..-.+..|+.+.+++++. .++|.+|
T Consensus 504 ~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~li 547 (578)
T PLN02573 504 YTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFI 547 (578)
T ss_pred HHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEE
Confidence 234444542 3 777788899999999999985 6899999
No 314
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=32.93 E-value=1.9e+02 Score=26.92 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHhcc----CCeEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCC---CCCCCChh
Q psy8699 63 VGFGIGLAVS----GATAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH---GALYHSQS 132 (325)
Q Consensus 63 v~~a~GlA~~----G~~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~---g~th~~~~ 132 (325)
+.+|+|.|++ |...++...+.+.. ...+|-+ |.++..++|+. +.|- -...+.++. ..+.....
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~~lPvi--fvve----NN~~aist~~~~~~~~~~~~ 179 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALWKLPVI--FVVE----NNQYAISTPTEEQTASPDIA 179 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHTTTSEE--EEEE----EESEETTEEHHHHCSSSTSG
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhccCCeE--EEEe----cCCcccccCccccccccchh
Confidence 4455565544 54443332477764 3556665 67887777773 2221 122233221 11111233
Q ss_pred HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEec
Q psy8699 133 PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFE 172 (325)
Q Consensus 133 d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~ 172 (325)
+.+..-.+|++.| .=.|+.++...+++|++ .++|++|-.
T Consensus 180 ~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 180 DRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp GGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred hhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4444446888754 77899999999999887 389999954
No 315
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=32.58 E-value=1.7e+02 Score=23.67 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=31.7
Q ss_pred EEEechhHH----HHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh--ccCcEEEEecC
Q psy8699 207 LIGWGTQVH----VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR--KTGRVIIAHEA 264 (325)
Q Consensus 207 ii~~G~~~~----~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~--~~~~vivvEe~ 264 (325)
|+++|+... .-..+++.|++...-++++++..+ -|+ ..+ ..+. +++++|+||--
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~--~~~-~~l~~~~~d~vIiVDAv 61 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPE--NFT-GKIREEKPDLIVIVDAA 61 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHH--HHH-HHHHhcCCCEEEEEECC
Confidence 667777552 455677777654223577888776 232 222 3333 57788888873
No 316
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=32.54 E-value=1.1e+02 Score=25.44 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=38.2
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhh-c--CCcEEEEecccccCCCHHHHHH--HHhccCcEEEEecC
Q psy8699 203 TDVTLIGWGTQVH----VLREVAGLAKEQ-L--GVSCEVIDLVSILPWDRETVFQ--SARKTGRVIIAHEA 264 (325)
Q Consensus 203 ~dv~ii~~G~~~~----~a~~A~~~L~~~-~--gi~~~vi~~~~l~P~d~~~l~~--~~~~~~~vivvEe~ 264 (325)
.+++|+++|+... .-..+++.|++. + .-++++++..+.-| +.+.. .+.+.+++|+||-.
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~---~~l~~~~~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAP---HFVFTLIPQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHH---HHHHHHhhhcCCCEEEEEEcc
Confidence 4688999998773 466778888642 1 12488888777433 11111 24678899999874
No 317
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=31.49 E-value=2.9e+02 Score=22.75 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=38.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCc-EEEEecccccCCCHH----HHHHHHhccC-cEEEEecCCcCCChHHHHH
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVS-CEVIDLVSILPWDRE----TVFQSARKTG-RVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~-~~vi~~~~l~P~d~~----~l~~~~~~~~-~vivvEe~~~~gglg~~v~ 275 (325)
|.+++.+..|..-..+....+.|... |.+ +=+++-..+..++.+ .|.+.+++.+ .+|++-.... +..++
T Consensus 32 g~~v~av~~G~~~~~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~----g~~la 106 (164)
T PF01012_consen 32 GGEVTAVVLGPAEEAAEALRKALAKY-GADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF----GRDLA 106 (164)
T ss_dssp TSEEEEEEEETCCCHHHHHHHHHHST-TESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH----HHHHH
T ss_pred CCeEEEEEEecchhhHHHHhhhhhhc-CCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC----CCcHH
Confidence 56788888884222222223445544 764 666666666656655 3445555533 4566654432 44455
Q ss_pred HHHHh
Q psy8699 276 ASIQD 280 (325)
Q Consensus 276 ~~l~e 280 (325)
..+..
T Consensus 107 ~~lA~ 111 (164)
T PF01012_consen 107 PRLAA 111 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 318
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.41 E-value=2.1e+02 Score=20.83 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=36.2
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHH-HhccCcEEEEecC
Q psy8699 204 DVTLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQS-ARKTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~-~~~~~~vivvEe~ 264 (325)
.++|+..+. ....+.+.++.|++. |+++.+ +... +.+..+ ++.+ ..+...++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~-g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAA-GVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHC-CCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCc
Confidence 356776654 456788889999988 999976 4432 344433 3333 3456667777654
No 319
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=30.67 E-value=3.1e+02 Score=24.99 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=35.4
Q ss_pred CcEEEEEechhHHHHHHHHHH-HHhhcCCc-EEEEecccccCCCH---H-HHHHHHhc--cCcEEEEecCCc---CCChH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGL-AKEQLGVS-CEVIDLVSILPWDR---E-TVFQSARK--TGRVIIAHEAPL---TSGFG 271 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~-L~~~~gi~-~~vi~~~~l~P~d~---~-~l~~~~~~--~~~vivvEe~~~---~gglg 271 (325)
..++++++|..-....++.+. |. - |.+ +-+|.-+.+.-.|. . .|...+++ ++ +|+.=+... +|..+
T Consensus 55 ~~Vtvvs~Gp~~a~~~~~lr~aLA-m-GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~D-LVl~G~~s~D~~tgqvg 131 (256)
T PRK03359 55 AQVTALSVGGKALTNAKGRKDVLS-R-GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFD-LILCGDGSSDLYAQQVG 131 (256)
T ss_pred CEEEEEEECCcchhhHHHHHHHHH-c-CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCC-EEEEcCccccCCCCcHH
Confidence 689999999754332222222 32 2 665 44444333333343 2 24444444 34 444433323 34566
Q ss_pred HHHHHHH
Q psy8699 272 AELAASI 278 (325)
Q Consensus 272 ~~v~~~l 278 (325)
..+++.|
T Consensus 132 ~~lAe~L 138 (256)
T PRK03359 132 LLVGEIL 138 (256)
T ss_pred HHHHHHh
Confidence 6666655
No 320
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=30.38 E-value=1.2e+02 Score=24.50 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
..+..|.+|.+.|++. |+....+++.. .|.+.+.+.+.++..
T Consensus 8 ~~C~~C~ka~~~L~~~-gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 8 PSCTSCRKAKAWLEEH-DIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCChHHHHHHHHHHHc-CCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 5677899999999998 99999999864 677788887777664
No 321
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=29.84 E-value=1.9e+02 Score=29.50 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=59.1
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEeccccc--HHHHHHHHHHHHhhcccccCCceeccceEEecc-CccC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADY--IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAV 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F--~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~ 122 (325)
|.+|+..+- +=-..++.|.|++++. -+++++| .++. .+-..++....+...+++... +++... .|..
T Consensus 420 ~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i-~GDG~f~~~~~e~~l~ta~~~~l~~~i------vv~NN~~yg~~ 492 (569)
T PRK08327 420 PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIAT-VGDGSFIFGVPEAAHWVAERYGLPVLV------VVFNNGGWLAV 492 (569)
T ss_pred CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEE-ecCcceeecCcHHHHHHHHHhCCCEEE------EEEeCcccccc
Confidence 566776431 2224556777777663 4667774 6664 333444434456655554421 222211 1110
Q ss_pred --------CCC---------CC-CCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEE
Q psy8699 123 --------GHG---------AL-YHSQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKD----KDPCIF 170 (325)
Q Consensus 123 --------g~g---------~t-h~~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~----~~Pv~i 170 (325)
+.+ .+ .+..-|. ++..++ |+....-.++.|+...++++++. ++|++|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~li 562 (569)
T PRK08327 493 KEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVL 562 (569)
T ss_pred hhHHhhhCcccccccccccccccCCCCCCHHHHHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 000 00 0011233 344443 33444457999999999999875 789998
No 322
>PRK12753 transketolase; Reviewed
Probab=29.65 E-value=5.8e+02 Score=26.74 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=48.7
Q ss_pred eEEEEecccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHH-HHHcCCCCcEEEeeC-
Q psy8699 75 TAIAEIQFADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPE-AYFAHTPGIKVVIPR- 149 (325)
Q Consensus 75 ~p~~~it~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~-~~~~~ip~~~v~~P~- 149 (325)
+.++. .++.- -..+|-+ +.++..++++. ++ ++........+.-..... +++ ..++.+ ||.++.+.
T Consensus 148 ~v~~~--~GDGel~EG~~~EA~-~~A~~~kL~nL-i~----ivd~N~~~i~~~~~~~~~-~~~~~~f~a~-Gw~~~~~vD 217 (663)
T PRK12753 148 YTYVF--MGDGCLMEGISHEVC-SLAGTLGLGKL-IG----FYDHNGISIDGETEGWFT-DDTAKRFEAY-HWHVIHEID 217 (663)
T ss_pred EEEEE--ECcCccccHHHHHHH-HHHHHHCCCCE-EE----EEECCCCcCCCChhhhcC-hhHHHHHHHc-CCeEEceeC
Confidence 44444 45542 4667777 46776677642 11 222222222222011222 333 567777 88887544
Q ss_pred --CHHHHHHHHHHhHhC-CCcEEEecccc
Q psy8699 150 --GPYKAKGLLLSCIKD-KDPCIFFEPKV 175 (325)
Q Consensus 150 --~~~e~~~~~~~a~~~-~~Pv~i~~~~~ 175 (325)
|..++.++++.+.+. ++|++|.....
T Consensus 218 GhD~~~i~~a~~~a~~~~~~P~~I~~~T~ 246 (663)
T PRK12753 218 GHDPQAIKEAILEAQSVKDKPSLIICRTI 246 (663)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEEEEEEe
Confidence 455666667766654 78999976543
No 323
>PRK08105 flavodoxin; Provisional
Probab=29.54 E-value=73 Score=26.31 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=34.9
Q ss_pred EEEEechhHHHHHHHHHHH----HhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHH
Q psy8699 206 TLIGWGTQVHVLREVAGLA----KEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L----~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~ 272 (325)
+.|-|||.+..+.+.++.| ++. |+++.++++..+.++. ..+.+.+|++=..+-.|-+-.
T Consensus 4 i~I~YgS~tGnte~~A~~l~~~l~~~-g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~p~ 66 (149)
T PRK08105 4 VGIFVGTVYGNALLVAEEAEAILTAQ-GHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDLPD 66 (149)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhC-CCceEEechhhCCchh-------cccCCeEEEEECCCCCCCCCh
Confidence 3566888777777666554 444 8889888876543321 123456676655443454433
No 324
>PRK06703 flavodoxin; Provisional
Probab=29.00 E-value=2e+02 Score=23.33 Aligned_cols=65 Identities=8% Similarity=-0.059 Sum_probs=33.6
Q ss_pred EEEEechhHHH----HHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 206 TLIGWGTQVHV----LREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 206 ~ii~~G~~~~~----a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
++|.|+|+... |...++.|++. |+++.+.++....+ . .+.+++.|++.=--+-.|-+...+...+
T Consensus 4 v~IiY~S~tGnT~~iA~~ia~~l~~~-g~~v~~~~~~~~~~---~----~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 4 ILIAYASMSGNTEDIADLIKVSLDAF-DHEVVLQEMDGMDA---E----ELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhc-CCceEEEehhhCCH---H----HHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 34555555544 44445556665 88888888766432 1 1345665555432211243444444443
No 325
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=28.78 E-value=2.4e+02 Score=24.11 Aligned_cols=97 Identities=19% Similarity=0.102 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCC--ChHHHHHHHHHhhccccCCCCeE
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS--GFGAELAASIQDKCFLSLEAPIR 291 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~g--glg~~v~~~l~e~~~~~~~~~v~ 291 (325)
+.+|..+++.++++ |+++++...+| |=|+.+.+......-+.++-+-..-+.| +|.+.++. +.+. +.|..
T Consensus 62 v~eAa~~ae~f~~~-~V~~titvtpc-Wcy~~etmd~~~~~p~aiwgfngterPGaVyLaAa~aa-~~Q~-----Gip~f 133 (171)
T PF07881_consen 62 VAEAAACAEKFKRE-GVGVTITVTPC-WCYGSETMDMDPNTPKAIWGFNGTERPGAVYLAAALAA-HNQK-----GIPAF 133 (171)
T ss_dssp HHHHHHHHHHHHCC-TEEEEEEEESS----HHHHS---TTS-EEEEE---SSS-HHHHHHHHHHH-HHHC-----T---E
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEEee-eecchhhhccCcCCCccEEeecCCCCCcHHHHHHHHHH-HhcC-----CCcce
Confidence 45777788899998 99999887777 4577787655433334555443322334 22222222 2232 35666
Q ss_pred EEcccCCCCcccccccCCCCHHHHHHHHHHHh
Q psy8699 292 RVTGYDTPFPHIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 292 ~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
++.|.+- +-.+...+ ++.+.+++.++.
T Consensus 134 ~IyG~~v---qD~~D~~i--p~dV~eKll~fa 160 (171)
T PF07881_consen 134 RIYGHDV---QDADDTSI--PEDVQEKLLRFA 160 (171)
T ss_dssp EEE-SS------TT--S----HHHHHHHHHHH
T ss_pred eeccccc---cCCCCCcC--cHHHHHHHHHHH
Confidence 7767431 10111222 456777776654
No 326
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=28.61 E-value=5.6e+02 Score=28.77 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=37.5
Q ss_pred CcEEEEEechhHH-HHHHHHHHHHhhcCC-cEEEEeccccc-CCCHHHHHHHHhccCcEEEEecC
Q psy8699 203 TDVTLIGWGTQVH-VLREVAGLAKEQLGV-SCEVIDLVSIL-PWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 203 ~dv~ii~~G~~~~-~a~~A~~~L~~~~gi-~~~vi~~~~l~-P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++++++++..+-- ...+|.+.++ . |+ ++++.++..|+ |...+.+.+.+....++|+|.-.
T Consensus 25 a~~v~ls~~dsdl~~l~~a~~~~~-~-~~~~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~~l 87 (1122)
T TIGR02257 25 ADIVFLSSADSDLALLAAAWKALP-D-DLPSLRLANLDNLQHPASVDLYVDSTARKAKIIVVRLL 87 (1122)
T ss_pred ccEEEEEeccchHHHHHHHHHHhh-c-CCcceEecChhhcCCHHHHHHHHHHHhccCcEEEEECC
Confidence 5777777765444 4444454444 3 66 77888888774 34345566666666678888654
No 327
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.20 E-value=1.1e+02 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSI 240 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l 240 (325)
.....+..|.+.|++. |+..+++++..-
T Consensus 7 ~~C~~C~~~~~~L~~~-~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEK-GIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHT-TBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHc-CCeeeEcccccc
Confidence 5677899999999998 999999999885
No 328
>PRK08114 cystathionine beta-lyase; Provisional
Probab=28.09 E-value=1.5e+02 Score=28.90 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEec
Q psy8699 224 AKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 224 L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
|++. |+++..++ +.|.+.+.+.++..-++|++|-
T Consensus 122 l~~~-Gi~v~~vd-----~~d~~~l~~~l~~~TrlV~~Et 155 (395)
T PRK08114 122 LSKL-GVTTTWFD-----PLIGADIAKLIQPNTKVVFLES 155 (395)
T ss_pred HHhc-CcEEEEEC-----CCCHHHHHHhcCCCceEEEEEC
Confidence 4443 66666655 2345556555543335666665
No 329
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.62 E-value=2e+02 Score=24.19 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=37.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc--ccCCCHHHHHHHHhccC-cEEEEec
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS--ILPWDRETVFQSARKTG-RVIIAHE 263 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~--l~P~d~~~l~~~~~~~~-~vivvEe 263 (325)
+..|+-.|+.-..+.++++.|++++ =.+.++.... ..+-+.+.+.+.+.+.+ .+|+|=-
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 4566777777788888999999883 3444443332 24555666776666654 4666633
No 330
>PRK09004 FMN-binding protein MioC; Provisional
Probab=27.53 E-value=1.5e+02 Score=24.40 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=37.4
Q ss_pred EEEEechhHHHHHHHHHHH----HhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChH---HHHHHHH
Q psy8699 206 TLIGWGTQVHVLREVAGLA----KEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFG---AELAASI 278 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L----~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg---~~v~~~l 278 (325)
+.|-|||.+..+.+.++.| ++. |.++.++++.. .+ .+.+.+.++++=..+-.|-+- ..+.+.+
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~-g~~~~~~~~~~-----~~----~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L 73 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEA-GFSTETLHGPL-----LD----DLSASGLWLIVTSTHGAGDLPDNLQPFFEEL 73 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHc-CCceEEeccCC-----HH----HhccCCeEEEEECCCCCCCCChhHHHHHHHH
Confidence 3455888887777776555 444 88888876532 12 234566677775554344443 3444444
Q ss_pred Hh
Q psy8699 279 QD 280 (325)
Q Consensus 279 ~e 280 (325)
.+
T Consensus 74 ~~ 75 (146)
T PRK09004 74 QE 75 (146)
T ss_pred Hh
Confidence 43
No 331
>PRK05569 flavodoxin; Provisional
Probab=27.10 E-value=1.6e+02 Score=23.49 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSI 240 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l 240 (325)
|++-..|...++.+++. |.++.++++...
T Consensus 13 GnT~~iA~~i~~~~~~~-g~~v~~~~~~~~ 41 (141)
T PRK05569 13 GNVEVLANTIADGAKEA-GAEVTIKHVADA 41 (141)
T ss_pred CHHHHHHHHHHHHHHhC-CCeEEEEECCcC
Confidence 34444455555566665 888877776553
No 332
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=27.02 E-value=1.7e+02 Score=23.35 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=25.0
Q ss_pred HHHHHHhhcCC--cEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 220 VAGLAKEQLGV--SCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 220 A~~~L~~~~gi--~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
+++.|++.+.. .+++++..+.- ..+...+.+++++|+||-.
T Consensus 3 v~~~L~~~~~~~~~v~vid~gt~~----~~l~~~l~~~d~viiVDA~ 45 (134)
T TIGR00140 3 LVEALQQRYAFPDNVTLLDGGTQG----LYLLPLIESADRLIILDAV 45 (134)
T ss_pred HHHHHHHhCCCCCCeEEEecCccH----HHHHHHHhcCCeEEEEecc
Confidence 45666554332 47778877753 2334445677888888764
No 333
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.93 E-value=2.7e+02 Score=20.77 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=42.5
Q ss_pred EEEEEechhHHHHHHH----HHHHHhhc-CCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChH-HHHHHH
Q psy8699 205 VTLIGWGTQVHVLREV----AGLAKEQL-GVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFG-AELAAS 277 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A----~~~L~~~~-gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg-~~v~~~ 277 (325)
++|++.||....+.++ ++.+++.. +..+.+--+..-.|-..+.+.+..+. .++|+++-=....|... ..|.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 6789999987655444 34454442 12333322223367666777665543 57888886665555543 345555
Q ss_pred HHh
Q psy8699 278 IQD 280 (325)
Q Consensus 278 l~e 280 (325)
+.+
T Consensus 82 ~~~ 84 (101)
T cd03416 82 LAA 84 (101)
T ss_pred HHH
Confidence 543
No 334
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=26.89 E-value=1.1e+02 Score=25.73 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=28.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEE
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEV 234 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~v 234 (325)
.+.+++++++|......+..++.|+++ |.+|.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~-g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQA-GADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhc-CCceEE
Confidence 567999999999999999999999998 876654
No 335
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=26.52 E-value=77 Score=26.00 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~ 265 (325)
.|++.|++. ||+..- .+-++++++.+ .+++.||++++++
T Consensus 49 ~a~~vl~e~-Gid~~~---~~~k~i~~~~~----~~~DlIitmd~~~ 87 (139)
T COG0394 49 RAVEVLAEH-GIDISG---HRSKQLTEEDF----DEFDLIITMDESN 87 (139)
T ss_pred HHHHHHHHc-CCCcCC---ccCccCchhhh----hhCCEEEEeChHH
Confidence 355566666 998863 45566665543 5678999999654
No 336
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.51 E-value=46 Score=26.06 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=25.8
Q ss_pred CcEEEEEechhHH-HHHHHHHHHHhhcCCcEEEEecc
Q psy8699 203 TDVTLIGWGTQVH-VLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 203 ~dv~ii~~G~~~~-~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
.+++||++|.... .-.+..+.|++. ||.+++.+-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~-gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAA-GIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHc-CCeEEEeCcH
Confidence 7899999998553 334556778887 9999877543
No 337
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=26.45 E-value=2e+02 Score=26.36 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=16.1
Q ss_pred CCcEEEEecc--cccCCCHHHHHHHHhccCcEEEEec
Q psy8699 229 GVSCEVIDLV--SILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 229 gi~~~vi~~~--~l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
++.+-+.+.+ +=..++.+.+.++.+ ...|+-+-+
T Consensus 127 ~~pi~iYn~P~~tg~~ls~~~l~~L~~-~~nv~giK~ 162 (289)
T PF00701_consen 127 DLPIIIYNNPARTGNDLSPETLARLAK-IPNVVGIKD 162 (289)
T ss_dssp SSEEEEEEBHHHHSSTSHHHHHHHHHT-STTEEEEEE
T ss_pred CCCEEEEECCCccccCCCHHHHHHHhc-CCcEEEEEc
Confidence 4445555543 223445555544443 445555544
No 338
>PRK05568 flavodoxin; Provisional
Probab=26.32 E-value=1.7e+02 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=20.2
Q ss_pred EEEechhHHH----HHHHHHHHHhhcCCcEEEEeccccc
Q psy8699 207 LIGWGTQVHV----LREVAGLAKEQLGVSCEVIDLVSIL 241 (325)
Q Consensus 207 ii~~G~~~~~----a~~A~~~L~~~~gi~~~vi~~~~l~ 241 (325)
+|-|+|+... |...++.+++. |+++.++++....
T Consensus 5 ~IvY~S~~GnT~~~a~~i~~~~~~~-g~~v~~~~~~~~~ 42 (142)
T PRK05568 5 NIIYWSGTGNTEAMANLIAEGAKEN-GAEVKLLNVSEAS 42 (142)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHC-CCeEEEEECCCCC
Confidence 4444444443 44444556555 8899998887643
No 339
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.31 E-value=2.1e+02 Score=25.93 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=35.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC-cEEEEecC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG-RVIIAHEA 264 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~-~vivvEe~ 264 (325)
.-++-.|+.-..+.++++.|++++|+++--..-...+|=+.+.+.+.+...+ .+++|=-+
T Consensus 106 ~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 106 TPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4455568888888899999988866654322223333333344555555543 57777443
No 340
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.23 E-value=1.5e+02 Score=28.88 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=54.6
Q ss_pred EEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc-CcEEEEecCCcCCCh--HHHHHHHHHhhc
Q psy8699 206 TLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT-GRVIIAHEAPLTSGF--GAELAASIQDKC 282 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~-~~vivvEe~~~~ggl--g~~v~~~l~e~~ 282 (325)
=||++-..-+.+++.++.|+.+ |.+|+.+.+..-=-+|.+.|++.++.. --|-+.--|+-+|-+ =.++++.+.+++
T Consensus 93 HIIts~iEH~aVl~~~~~Le~~-g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 93 HIITSAIEHPAVLNTCRYLERQ-GFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred eEEEcccccHHHHHHHHHHHhc-CCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 3666767888899999999776 999999988876667888898888643 333344446666643 456777776654
No 341
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=25.83 E-value=3.1e+02 Score=25.67 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=16.8
Q ss_pred CCHHHHHHHHhccCcEEEEecCCcCCCh
Q psy8699 243 WDRETVFQSARKTGRVIIAHEAPLTSGF 270 (325)
Q Consensus 243 ~d~~~l~~~~~~~~~vivvEe~~~~ggl 270 (325)
+|.+.|.+.+++.+..+++|.-+..|+.
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~g~~ 173 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSFGGI 173 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEccccccCc
Confidence 4456677777776666666664444443
No 342
>PRK09739 hypothetical protein; Provisional
Probab=25.83 E-value=2.5e+02 Score=24.06 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEeccccc--C------------------CCHHHHHHHHhccCcEEEEecCCcCCChHH
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSIL--P------------------WDRETVFQSARKTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~--P------------------~d~~~l~~~~~~~~~vivvEe~~~~gglg~ 272 (325)
+...+...++.+++. |.+++++|+.-.. | -+.+.+.+.++..+.+|+.=-- ..+++.+
T Consensus 19 s~~l~~~~~~~~~~~-g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~-y~~~~Pa 96 (199)
T PRK09739 19 TAKVAEAIHQRAQER-GHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPL-WWYSFPA 96 (199)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECch-hhhcchH
Confidence 344555667778877 8899999886532 1 1124556667778887777554 5688888
Q ss_pred HHHHHHHh
Q psy8699 273 ELAASIQD 280 (325)
Q Consensus 273 ~v~~~l~e 280 (325)
.+-.++..
T Consensus 97 ~LK~~iD~ 104 (199)
T PRK09739 97 MLKGYIDR 104 (199)
T ss_pred HHHHHHHH
Confidence 88877743
No 343
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=25.75 E-value=6e+02 Score=28.47 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=39.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCC-cEEEEecccc-cCCCHHHHHHHHhccCcEEEEecCCcCCChH
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGV-SCEVIDLVSI-LPWDRETVFQSARKTGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi-~~~vi~~~~l-~P~d~~~l~~~~~~~~~vivvEe~~~~gglg 271 (325)
-++++++++..+--.++.++-..... |+ ++++.++..| .|...+.+.+.+....++|++.-+ ||.+
T Consensus 24 pA~~v~ls~~ds~l~~l~~a~~~~~~-~~p~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~ll---Gg~~ 91 (1100)
T PRK12321 24 PADLVVLSFSDSDLGALAAAWAAAGG-GLPSLRLANLAALRHPMSVDLYVEQVLAGAKAVLIRLL---GGLD 91 (1100)
T ss_pred CcCEEEEEcCcchHHHHHHHHHhccc-CCcceeecChhhcCCHHHHHHHHHHHhccCcEEEEEcC---CCch
Confidence 35777777776555444443321223 55 7777777777 445456666666666778888654 5544
No 344
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=25.70 E-value=37 Score=27.04 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=24.7
Q ss_pred eeeCCcEEEEEechhHH--HHHHHHHHHHhhcCCcEEEE
Q psy8699 199 LVAGTDVTLIGWGTQVH--VLREVAGLAKEQLGVSCEVI 235 (325)
Q Consensus 199 ~~~g~dv~ii~~G~~~~--~a~~A~~~L~~~~gi~~~vi 235 (325)
+..+.+++||++|.... .--+..+.|++. ||.+.+.
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~-Gi~ve~m 92 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKR-GVEVLVL 92 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhc-CCEEEEc
Confidence 34568899999998743 345555677776 7766543
No 345
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.59 E-value=2.7e+02 Score=28.41 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=60.7
Q ss_pred CCceeechhh-H-HHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC
Q psy8699 49 KHRVFNTPLS-E-QGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG 123 (325)
Q Consensus 49 p~r~~~~gIa-E-~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g 123 (325)
|.+|+..|-- - -..+..|+|+++. .-|++++| -++.. +.....|. .+.+.++|. +. +++... .|...
T Consensus 398 p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i-~GDG~F~m~~qEL~-Ta~r~~lpv---~i---vv~nN~~~g~v~ 469 (550)
T COG0028 398 PRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAI-AGDGGFMMNGQELE-TAVRYGLPV---KI---VVLNNGGYGMVR 469 (550)
T ss_pred CCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEE-EcccHHhccHHHHH-HHHHhCCCE---EE---EEEECCccccch
Confidence 6778876321 1 1233456666655 34778885 66632 33344443 455555543 21 222221 11110
Q ss_pred -----CCC-----CCCChh-HHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 124 -----HGA-----LYHSQS-PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 124 -----~g~-----th~~~~-d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.+. ++.... ...+..++ |+..+.-.++.|++..++.|+..++|++|
T Consensus 470 ~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~~~~el~~al~~al~~~~p~li 526 (550)
T COG0028 470 QWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVETPEELEEALEEALASDGPVLI 526 (550)
T ss_pred HHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011 111111 11222233 67777778999999999999999999888
No 346
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.55 E-value=1.9e+02 Score=26.62 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=34.6
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 202 GTDVTLIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 202 g~dv~ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|.|.+++..-... ....+=.+.+.+..++.+-+.|. +=.+++.+.+.++.++...|+-+=+.
T Consensus 94 Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~-~g~~l~~~~l~~L~~~~pnivgiKds 159 (289)
T cd00951 94 GADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR-ANAVLTADSLARLAERCPNLVGFKDG 159 (289)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-CCCCCCHHHHHHHHhcCCCEEEEEeC
Confidence 5666666533221 22233233333322677778873 33467888887776546777777654
No 347
>PRK06756 flavodoxin; Provisional
Probab=25.47 E-value=3.6e+02 Score=21.69 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=32.8
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
+|++-..|...++.|++. |+++.++++....+ . ..+.+++.|++.=--+-.|-+...+..++.
T Consensus 12 tGnTe~vA~~ia~~l~~~-g~~v~~~~~~~~~~--~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~ 74 (148)
T PRK06756 12 SGNTEEMADHIAGVIRET-ENEIEVIDIMDSPE--A----SILEQYDGIILGAYTWGDGDLPDDFLDFYD 74 (148)
T ss_pred CchHHHHHHHHHHHHhhc-CCeEEEeehhccCC--H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHH
Confidence 445555566666677776 88888887754321 1 123455555544322112334444555543
No 348
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=25.16 E-value=1.4e+02 Score=24.13 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=45.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEE-----ecCCcCCCh
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIA-----HEAPLTSGF 270 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivv-----Ee~~~~ggl 270 (325)
++.+++--...-+.+.+-..+.||--.+++|.+.|.--++.+-+.+++++ .+.|+|+ |=|+..|-.
T Consensus 3 ii~F~C~wcsygaaDlag~~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ 74 (132)
T COG1908 3 IIAFACNWCSYGAADLAGTSRMQYPPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNY 74 (132)
T ss_pred EEEEEcccccccchhhhccccccCCCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccch
Confidence 34444444444455555556666667899999999999999988777665 6888886 336555654
No 349
>PTZ00062 glutaredoxin; Provisional
Probab=25.00 E-value=1.9e+02 Score=25.36 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCChHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~gglg~ 272 (325)
..+++|++-| +....+.++.+.|++. |++...+|+.. | +.+++.+++ +=..|++... ..||+..
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-~i~y~~~DI~~----d-~~~~~~l~~~sg~~TvPqVfI~G~-~IGG~d~ 184 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-GVKYETYNIFE----D-PDLREELKVYSNWPTYPQLYVNGE-LIGGHDI 184 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-CCCEEEEEcCC----C-HHHHHHHHHHhCCCCCCeEEECCE-EEcChHH
Confidence 4678899888 3688999999999998 99999998874 2 233343332 2245777665 4588865
Q ss_pred H
Q psy8699 273 E 273 (325)
Q Consensus 273 ~ 273 (325)
.
T Consensus 185 l 185 (204)
T PTZ00062 185 I 185 (204)
T ss_pred H
Confidence 4
No 350
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=24.94 E-value=2e+02 Score=23.66 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=31.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
++|++-|.....+.++++.|++. |+.+-+|-+.. .+.+.|.+...+.
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~-gi~i~~ig~g~---~~~~~L~~ia~~~ 153 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNL-GVNVFAVGVKD---ADESELKMIASKP 153 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHC-CCEEEEEecCc---CCHHHHHHHhCCC
Confidence 45556565544567888899888 88877776654 4577777766654
No 351
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=24.92 E-value=2e+02 Score=29.85 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=23.3
Q ss_pred HcCCCCcEEEeeCCHH---HHHHHHHHhHhCCCcEEEeccc
Q psy8699 137 FAHTPGIKVVIPRGPY---KAKGLLLSCIKDKDPCIFFEPK 174 (325)
Q Consensus 137 ~~~ip~~~v~~P~~~~---e~~~~~~~a~~~~~Pv~i~~~~ 174 (325)
|..+ |+.++-|.|.. ++..+++.+-+.++|++|....
T Consensus 234 f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~~T 273 (617)
T TIGR00204 234 FEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHIQT 273 (617)
T ss_pred HHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4444 77777676655 5555555554567899997653
No 352
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=24.48 E-value=1.6e+02 Score=25.81 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=37.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc--CcEEEEec
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT--GRVIIAHE 263 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~--~~vivvEe 263 (325)
++|++-|.......++++.|++. |+.+-.|-+.. .|.+.|.+..... +.++.+++
T Consensus 112 villTDG~s~~~~~~~a~~lk~~-gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~ 168 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARAL-GIEMFAVGVGR---ADEEELREIASEPLADHVFYVED 168 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHC-CcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCC
Confidence 46667775555567788889888 88877777665 5778888876543 35666554
No 353
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=24.46 E-value=3.1e+02 Score=21.42 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred EEechhHHHHHH----HHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEe
Q psy8699 208 IGWGTQVHVLRE----VAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAH 262 (325)
Q Consensus 208 i~~G~~~~~a~~----A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvE 262 (325)
|-|+|+.....+ .++.+++. |+++.++++....| +. +.+++.+++.=
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~-g~~v~~~~~~~~~~---~~----l~~~d~iilgs 53 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEA-GAEVDLLEVADADA---ED----LLSYDAVLLGC 53 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhc-CCeEEEEEcccCCH---HH----HhcCCEEEEEc
Confidence 445555544444 44555555 88888888776533 22 23456555553
No 354
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.44 E-value=54 Score=26.32 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=54.2
Q ss_pred CcEEEEEechh---H-HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 203 TDVTLIGWGTQ---V-HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 203 ~dv~ii~~G~~---~-~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
.++.+.|.|.. . ..--.|++.|++. |++.+ -..-++++.+. +.+.+.||++++++ -..+....
T Consensus 29 ~~~~v~SAG~~~~~~~~~~~~a~~~l~~~-gid~~---~~~s~~l~~~~----~~~~D~Ii~m~~~~-----~~~~~~~~ 95 (138)
T PF01451_consen 29 DRFEVESAGTEAWPGEPVDPRAIAVLKEH-GIDIS---GHRSRQLTEED----LDEADLIITMDDSH-----REELCPLF 95 (138)
T ss_dssp TTEEEEEEESSSTTTSSSTHHHHHHHHHT-TSSCT---TSBBCBGGHHH----HHHSSEEEESSHHH-----HHHHHHHH
T ss_pred CCcEEEEEeecccccccccchHHHHHHHh-CCCcc---cceeccccccc----cccCCEEEEccHHH-----hhhhhhhc
Confidence 45666666655 1 1233566677777 88864 33445666554 45678899998864 22344444
Q ss_pred HhhccccCCCCeEEE---cccCCCCcccccccCCCCHHHHHHHHHHHh
Q psy8699 279 QDKCFLSLEAPIRRV---TGYDTPFPHIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 279 ~e~~~~~~~~~v~~~---~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
... ...++..+ -.+++|+..-.+.|.- ..++|.+++++|+
T Consensus 96 ~~~----~~~kv~~l~~~~~I~DP~~~~~~~f~~-~~~~I~~~~~~ll 138 (138)
T PF01451_consen 96 PGD----YRAKVFLLGEHWDIPDPYGGSLEAFRR-VRDQIERRVKALL 138 (138)
T ss_dssp GTT----GGGCEEEGGGESSS-HHTTSSHHHHHH-HHHHHHHHHHHHH
T ss_pred chh----hhhhheeccccCcCCCCCCCCHHHHHH-HHHHHHHHHHHhC
Confidence 331 11234322 1344555433334444 5566666666653
No 355
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=24.17 E-value=7.3e+02 Score=25.91 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=45.6
Q ss_pred ccccH---HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCC-ChhHH-HHHcCCCCcEEEee---CCHHH
Q psy8699 82 FADYI---FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYH-SQSPE-AYFAHTPGIKVVIP---RGPYK 153 (325)
Q Consensus 82 ~~~F~---~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~-~~~d~-~~~~~ip~~~v~~P---~~~~e 153 (325)
.++.- -..+|-+. .++..++++.. + ++... +..-+|.+.- ..+++ ..+++. ||.+..- .|..+
T Consensus 149 ~GDG~l~EG~~~EA~~-~A~~~~L~nLi-~----ivd~N--~~~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~a 219 (653)
T TIGR00232 149 VGDGCLQEGISYEVAS-LAGHLKLGKLI-V----LYDSN--RISIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAA 219 (653)
T ss_pred EccccccccHHHHHHH-HHHHhCCCcEE-E----EEeCC--CeeeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHH
Confidence 56652 35677764 67766666521 1 11122 2211222211 12343 467766 7777764 35666
Q ss_pred HHHHHHHhHhC-CCcEEEecccc
Q psy8699 154 AKGLLLSCIKD-KDPCIFFEPKV 175 (325)
Q Consensus 154 ~~~~~~~a~~~-~~Pv~i~~~~~ 175 (325)
+.++++.+-+. ++|++|.....
T Consensus 220 i~~A~~~a~~~~~~P~~I~~~T~ 242 (653)
T TIGR00232 220 IDAAIEEAKASKDKPTLIEVTTT 242 (653)
T ss_pred HHHHHHHHHhCCCCCEEEEEEee
Confidence 66677766555 48999977543
No 356
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=24.03 E-value=2.4e+02 Score=21.90 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=32.6
Q ss_pred CCcEEEEEechhHHHHHHHHH-HHHhhcCCcEEEEecccccC--CCHHHHHHHHh
Q psy8699 202 GTDVTLIGWGTQVHVLREVAG-LAKEQLGVSCEVIDLVSILP--WDRETVFQSAR 253 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~-~L~~~~gi~~~vi~~~~l~P--~d~~~l~~~~~ 253 (325)
+.|+ |-.|.-+..-++-.+ ...+. |+.+.+|+..-.-| +|.+.+.+.++
T Consensus 50 ~~Dv--Ill~PQi~~~~~~i~~~~~~~-~ipv~~I~~~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 50 EYDL--YLVSPQTKMYFKQFEEAGAKV-GKPVVQIPPQAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred CCCE--EEEChHHHHHHHHHHHHhhhc-CCCEEEeCHHHcCCCccCHHHHHHHHH
Confidence 3564 444555554444444 44455 99999999999986 88888776654
No 357
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=24.01 E-value=5.1e+02 Score=22.96 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=39.0
Q ss_pred cCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccC------CCCHHH
Q psy8699 241 LPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFY------IPDKWR 314 (325)
Q Consensus 241 ~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~------l~~~~~ 314 (325)
-+++.+.+.+.+.+.+- ++.-.. ..|++..+.+++.- +.|+... . .+...+..+... --+.+.
T Consensus 265 g~~~~~~~~~~~~~ad~-~i~~~~--~~~~~~~~~Ea~~~------G~pvI~~-~-~~~~~~~~~~~~~g~~~~~~~~~~ 333 (377)
T cd03798 265 GAVPHEEVPAYYAAADV-FVLPSL--REGFGLVLLEAMAC------GLPVVAT-D-VGGIPEIITDGENGLLVPPGDPEA 333 (377)
T ss_pred CCCCHHHHHHHHHhcCe-eecchh--hccCChHHHHHHhc------CCCEEEe-c-CCChHHHhcCCcceeEECCCCHHH
Confidence 35566777777777664 333222 26677777777652 3565421 1 111222222111 127788
Q ss_pred HHHHHHHHhh
Q psy8699 315 CLEAVKQITR 324 (325)
Q Consensus 315 I~~~i~~~~~ 324 (325)
+++++.+++.
T Consensus 334 l~~~i~~~~~ 343 (377)
T cd03798 334 LAEAILRLLA 343 (377)
T ss_pred HHHHHHHHhc
Confidence 8888887753
No 358
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=23.97 E-value=69 Score=25.10 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=26.1
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhhcCCcEEEEecc
Q psy8699 201 AGTDVTLIGWGTQVH-VLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~-~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
...+++||++|.... .--+..+.|+++ ||.+++.+-.
T Consensus 51 ~~peiliiGTG~~~~~~~~~~~~~l~~~-gi~vE~m~T~ 88 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLAR-GIGVEVMDTQ 88 (109)
T ss_pred cCCCEEEEecCCCCCcCCHHHHHHHHHc-CCeEEEECHH
Confidence 346899999997643 334455678887 9988877543
No 359
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=23.96 E-value=1.9e+02 Score=23.40 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEec
Q psy8699 207 LIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 207 ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
|++.|+.. ..-..+++.|+++..-++.+++..+.-+ + +...+.+++++|++|-
T Consensus 2 VlGvGN~l~~DDGvG~~v~~~L~~~~~~~v~~id~g~~g~---~-l~~~l~~~d~vIivDA 58 (139)
T cd06066 2 VIGYGNPLRGDDGLGPAVAERIEEWLLPGVEVLAVHQLTP---E-LAEDLAGADRVIFIDA 58 (139)
T ss_pred EEEeCCccccccchhHHHHHHHHhhCCCCeEEEEcCCCCH---H-HHHHhcCCCEEEEEEc
Confidence 45555544 2345566666655233566777766422 2 2234556777888876
No 360
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=23.93 E-value=1.9e+02 Score=23.58 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=33.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc--CcEEEE
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT--GRVIIA 261 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~--~~vivv 261 (325)
+++++-|.......+++..|++. |+.+-.|-+..- +.+.|++..... +.+..+
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~-gv~i~~ig~g~~---~~~~L~~ia~~~~~~~~~~~ 161 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQA-GIEVFAVGVKNA---DEEELKQIASDPKELYVFNV 161 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHC-CCEEEEEECCcC---CHHHHHHHHCCCchheEEec
Confidence 45566665544445566677777 887776665543 888887776655 344444
No 361
>PRK13530 arsenate reductase; Provisional
Probab=23.74 E-value=1.2e+02 Score=24.46 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD 297 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~ 297 (325)
-.|++.|++. |+++.- ..-+.++.+. +...+-||++.++. .++...+... .....+ .++
T Consensus 46 ~~a~~~l~e~-Gi~~~~---~~s~~l~~~~----~~~~D~ii~m~~~~------~~~~~~~p~~------~~~~~w-~i~ 104 (133)
T PRK13530 46 PNAIKAMKEV-GIDISN---QTSDIIDNDI----LNNADLVVTLCSHA------DDVCPSTPPH------VKRVHW-GFD 104 (133)
T ss_pred HHHHHHHHHc-CCCcCC---CccccCChhH----hccCCEEEEechHh------hhhccccCCC------ceEEEC-CCC
Confidence 4566677776 887632 2334455443 34668888886441 1222111110 112233 677
Q ss_pred CCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 298 TPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 298 ~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
+|+..-.+.|.- .-++|.++++++++
T Consensus 105 DP~~~~~~~f~~-~~~~I~~~v~~l~~ 130 (133)
T PRK13530 105 DPAGKEWSEFQR-VRDEIGERIKRFAE 130 (133)
T ss_pred CCCCCcHHHHHH-HHHHHHHHHHHHHH
Confidence 776543444444 56677777777764
No 362
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=23.62 E-value=2.1e+02 Score=26.54 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=22.4
Q ss_pred CCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++.+-+.|.+ =.+++.+.+.++.++...|+-+=+.
T Consensus 132 ~lpi~lYn~~-g~~l~~~~l~~L~~~~pni~giK~s 166 (303)
T PRK03620 132 DLGVIVYNRD-NAVLTADTLARLAERCPNLVGFKDG 166 (303)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 5666677733 3467777777766566677777654
No 363
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=23.54 E-value=2.4e+02 Score=21.63 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=34.7
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc
Q psy8699 204 DVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK 254 (325)
Q Consensus 204 dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~ 254 (325)
++.++-.| |....+-++.+.|++. |++..+=-+.|.--=|.+.+.+.+++
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~s-Gl~y~~~pm~T~IEGe~dev~~~i~~ 57 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKES-GLKYELHPMGTLIEGDLDELFEAIKA 57 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHc-CCCeEecCCccEEecCHHHHHHHHHH
Confidence 56677777 5566777888999887 99998877777644455555555443
No 364
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=23.27 E-value=1.1e+02 Score=25.88 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=34.6
Q ss_pred EEEEEechh----HHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 205 VTLIGWGTQ----VHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 205 v~ii~~G~~----~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
+++++=|.. .....++++.+++. |+.+-.|.+ ...+.+.|++...+.++++.+.++
T Consensus 107 villTDG~~~~~~~~~~~~~a~~l~~~-gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~~~ 166 (185)
T cd01474 107 IIALTDGQLLLNGHKYPEHEAKLSRKL-GAIVYCVGV---TDFLKSQLINIADSKEYVFPVTSG 166 (185)
T ss_pred EEEEcCCCcCCCCCcchHHHHHHHHHc-CCEEEEEee---chhhHHHHHHHhCCCCeeEecCcc
Confidence 445554543 12345566778877 887665655 456788888877777765534443
No 365
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=23.26 E-value=4.3e+02 Score=22.37 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC-cEEEEec
Q psy8699 217 LREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG-RVIIAHE 263 (325)
Q Consensus 217 a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~-~vivvEe 263 (325)
..++++.++++ ||.+-+|.+.. +.+.|++.++.++ +...+++
T Consensus 125 ~~~~~~~l~~~-~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 125 IYETIDKLKKE-NIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred HHHHHHHHHHc-CcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 44678888888 99998888863 3456788888776 4444433
No 366
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=22.99 E-value=3.5e+02 Score=20.72 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred cEEEEEechhHHHHHHHH----HHHHhhcC-CcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVA----GLAKEQLG-VSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~----~~L~~~~g-i~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~gglg~~v~~~ 277 (325)
.++|++.||....+.+.. +.++++.+ ..+.+--+..-.|--.+.+.+..+ +.++++++-=....|.....+...
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~~~i~~~ 81 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLMDRIEEQ 81 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchHHHHHHH
Confidence 368899998755444443 34544322 234333333336766677766654 467888887665667766666665
Q ss_pred HHh
Q psy8699 278 IQD 280 (325)
Q Consensus 278 l~e 280 (325)
+.+
T Consensus 82 ~~~ 84 (117)
T cd03414 82 VAE 84 (117)
T ss_pred HHH
Confidence 544
No 367
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=22.94 E-value=2e+02 Score=27.78 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCC
Q psy8699 245 RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTP 299 (325)
Q Consensus 245 ~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~ 299 (325)
.++|.+.++..++|-+||=+...|.-...+.+.++++. -+.|-.|++++..|
T Consensus 99 NqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~---~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 99 NQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRP---GGPPSLRITGIGPP 150 (374)
T ss_pred hHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCC---CCCCeEEEEeccCC
Confidence 36788999888999999988666644445566666542 23567788888764
No 368
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=22.81 E-value=4.9e+02 Score=22.33 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=39.6
Q ss_pred echhHHHHHHHHHHHHh-hcCCcEEEEecccccCCCHHHH---------------HHHHhccCcEEEEecCCcCCChHHH
Q psy8699 210 WGTQVHVLREVAGLAKE-QLGVSCEVIDLVSILPWDRETV---------------FQSARKTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~-~~gi~~~vi~~~~l~P~d~~~l---------------~~~~~~~~~vivvEe~~~~gglg~~ 273 (325)
+|++...|..+++.+++ . |.++++++++...| .+.+ .+.+..++.|++- .-.+.|.+...
T Consensus 11 ~G~T~~lA~~ia~g~~~~~-g~ev~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~G-SPty~g~~~~~ 86 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVD-GAEVVVKRVPETVP--EEVAEKSHGKTDQTAPVATPQELADYDAIIFG-TPTRFGNMASQ 86 (197)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCEEEEEeccccCc--HHHHHhccCCcccCCccCCHHHHHHCCEEEEE-ecccccCccHH
Confidence 34556666666766765 4 88999998865422 1111 1234556655544 33356778777
Q ss_pred HHHHHHh
Q psy8699 274 LAASIQD 280 (325)
Q Consensus 274 v~~~l~e 280 (325)
+..++..
T Consensus 87 lk~fld~ 93 (197)
T TIGR01755 87 MRNFLDQ 93 (197)
T ss_pred HHHHHHh
Confidence 7777654
No 369
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.33 E-value=1e+02 Score=30.98 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=28.8
Q ss_pred HcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 137 FAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 137 ~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
.+..|. .|+.|.+.+|+..++++|.+++-|++.|
T Consensus 52 ~~~~p~-~Vv~P~s~eeV~~iv~~a~~~~ipv~~r 85 (499)
T PRK11230 52 YRTRPL-LVVLPKQMEQVQALLAVCHRLRVPVVAR 85 (499)
T ss_pred cCCCCC-EEEeeCCHHHHHHHHHHHHHcCCeEEEE
Confidence 455564 5888999999999999999988888876
No 370
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=22.25 E-value=2.4e+02 Score=24.18 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=29.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEE-EEecccccC
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCE-VIDLVSILP 242 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~-vi~~~~l~P 242 (325)
...|++|......|.|.++.|+++ |..+. |+=+.+.-|
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~-G~~v~~l~liD~~~p 105 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEA-GEEVSRLILIDSPPP 105 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHT-T-SESEEEEESCSST
T ss_pred CeeehccCccHHHHHHHHHHHHHh-hhccCceEEecCCCC
Confidence 689999999999999999999998 98763 443443334
No 371
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=22.12 E-value=2.5e+02 Score=25.91 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=34.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc----------ccCCCHHHHHHHHhccCcEE
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS----------ILPWDRETVFQSARKTGRVI 259 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~----------l~P~d~~~l~~~~~~~~~vi 259 (325)
.|.++.|+++|.+-.. +++.|+.. |.++.+++-.. ..+++.+.+.+.+++.+-|+
T Consensus 150 ~gk~v~IiG~G~iG~a---vA~~L~~~-G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT---IARTFSAL-GARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCEEEEEcChHHHHH---HHHHHHHC-CCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence 3678999999996654 44555555 88888776532 23444455666666666433
No 372
>PRK07308 flavodoxin; Validated
Probab=21.89 E-value=4.2e+02 Score=21.23 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
|++-..|...++.|++. |+.+.+.++....+ + .+.+.+.|++.=-.+-.|-+...+..++.
T Consensus 13 GnTe~iA~~ia~~l~~~-g~~~~~~~~~~~~~---~----~l~~~d~vi~g~~t~g~G~~p~~~~~fl~ 73 (146)
T PRK07308 13 GNTEEIADIVADKLREL-GHDVDVDECTTVDA---S----DFEDADIAIVATYTYGDGELPDEIVDFYE 73 (146)
T ss_pred chHHHHHHHHHHHHHhC-CCceEEEecccCCH---h----HhccCCEEEEEeCccCCCCCCHHHHHHHH
Confidence 34444455555667666 88888887766533 2 13455555554322212335545555543
No 373
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=21.82 E-value=4.1e+02 Score=21.25 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=35.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHh----hcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEE
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKE----QLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIA 261 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~----~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivv 261 (325)
-+++++.||--..+.+..+.+.+ ..++.+.+=-+..-.|--.+.+.+..+ +.++++|+
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEe
Confidence 37899999987766655554433 223444333333345766677777655 45788888
No 374
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=21.52 E-value=4.1e+02 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEec
Q psy8699 139 HTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFE 172 (325)
Q Consensus 139 ~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~ 172 (325)
.+|.+.| .-.|..++...++.|++ .++|++|-.
T Consensus 189 G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 189 GIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3555433 33467788777877774 478999954
No 375
>PRK10307 putative glycosyl transferase; Provisional
Probab=21.49 E-value=5.1e+02 Score=24.58 Aligned_cols=105 Identities=8% Similarity=0.042 Sum_probs=51.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCC--hHHHHHHHHHh
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSG--FGAELAASIQD 280 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gg--lg~~v~~~l~e 280 (325)
..++|++.|.......+.++ +. |++ . +.++-..+.+.+.+.+...+- .++-...-..+ +.+.+.++++-
T Consensus 260 ~~l~ivG~g~~~~~l~~~~~---~~-~l~-~---v~f~G~~~~~~~~~~~~~aDi-~v~ps~~e~~~~~~p~kl~eama~ 330 (412)
T PRK10307 260 LIFVICGQGGGKARLEKMAQ---CR-GLP-N---VHFLPLQPYDRLPALLKMADC-HLLPQKAGAADLVLPSKLTNMLAS 330 (412)
T ss_pred eEEEEECCChhHHHHHHHHH---Hc-CCC-c---eEEeCCCCHHHHHHHHHhcCE-eEEeeccCcccccCcHHHHHHHHc
Confidence 35666666665444333333 22 554 2 233444577777787777764 33322211111 45556666542
Q ss_pred hccccCCCCeEEEcccCC-CCcccccccCC----CCHHHHHHHHHHHh
Q psy8699 281 KCFLSLEAPIRRVTGYDT-PFPHIFEPFYI----PDKWRCLEAVKQIT 323 (325)
Q Consensus 281 ~~~~~~~~~v~~~~g~~~-~~~~~~~~~~l----~~~~~I~~~i~~~~ 323 (325)
+.|+..- ...+ ...+..+..|+ -+++++++++.+++
T Consensus 331 ------G~PVi~s-~~~g~~~~~~i~~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 331 ------GRNVVAT-AEPGTELGQLVEGIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred ------CCCEEEE-eCCCchHHHHHhCCcEEeCCCCHHHHHHHHHHHH
Confidence 3566422 1111 12222222332 27888999888775
No 376
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.35 E-value=2.7e+02 Score=26.00 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCcEEEEEec---h-hHHHHHHHHHHHHhhc-CCcEEEEecccc--cCCCHHHHHHHHhccCcEEEEecC
Q psy8699 202 GTDVTLIGWG---T-QVHVLREVAGLAKEQL-GVSCEVIDLVSI--LPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 202 g~dv~ii~~G---~-~~~~a~~A~~~L~~~~-gi~~~vi~~~~l--~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|.|.+++..= . .-....+=.+.+.+.. ++.+-+.|.+.. .+++.+.+.++. +...|+-+=+.
T Consensus 103 Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~-~~pnivgiKds 171 (309)
T cd00952 103 GADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA-QIPQVVAAKYL 171 (309)
T ss_pred CCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh-cCCCEEEEEec
Confidence 5666555522 1 1223333334443333 377788887743 578888887765 56677777554
No 377
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=21.30 E-value=1.8e+02 Score=22.99 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=25.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEe
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAH 262 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvE 262 (325)
.|..++.+|- .--..+++.|++. |.++.|+.. ..-..+.|++.+ +..+.+|
T Consensus 96 ~d~ivLvSgD--~Df~~~v~~l~~~-g~~V~v~~~---~~~~s~~L~~~a---d~f~~~~ 146 (146)
T PF01936_consen 96 PDTIVLVSGD--SDFAPLVRKLRER-GKRVIVVGA---EDSASEALRSAA---DEFISIE 146 (146)
T ss_dssp -SEEEEE-----GGGHHHHHHHHHH---EEEEEE----GGGS-HHHHHHS---SEEEE--
T ss_pred CCEEEEEECc--HHHHHHHHHHHHc-CCEEEEEEe---CCCCCHHHHHhc---CEEEeCC
Confidence 3777888876 2234456677777 999999884 223345555544 4566654
No 378
>KOG1250|consensus
Probab=21.26 E-value=6.5e+02 Score=24.83 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=71.7
Q ss_pred cEEEeeCCHHHHHHHHHHhHhCCCcEEEecccccccccccCCCCCCcccCCCceeEee-eCCcEEEEEechhHHHHHHHH
Q psy8699 143 IKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILV-AGTDVTLIGWGTQVHVLREVA 221 (325)
Q Consensus 143 ~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~-~g~dv~ii~~G~~~~~a~~A~ 221 (325)
-.|++-|-.+.+.++-..+-+..-|+-|..|+. .|.-|++-++ .| .+++-+|....+|.+-+
T Consensus 115 ~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~---------------tp~~kiq~~~nlG--A~Vil~G~~~deAk~~a 177 (457)
T KOG1250|consen 115 AGVIASSAGNHAQAAAYAARKLGIPATIVMPVA---------------TPLMKIQRCRNLG--ATVILSGEDWDEAKAFA 177 (457)
T ss_pred CceEEecCccHHHHHHHHHHhcCCceEEEecCC---------------ChHHHHHHHhccC--CEEEEecccHHHHHHHH
Confidence 345666666666555555556677887755532 1111222222 24 46777899999999988
Q ss_pred HHHHhhcCCcEEEEecccccCCCHH-----------HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhc
Q psy8699 222 GLAKEQLGVSCEVIDLVSILPWDRE-----------TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKC 282 (325)
Q Consensus 222 ~~L~~~~gi~~~vi~~~~l~P~d~~-----------~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~ 282 (325)
..+.++ . .+..+.|||.- +|.+-++....-|++--. -|||-.-|+.++.+-+
T Consensus 178 ~~lAke-~------gl~yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVG--GGGLiaGIat~vk~~~ 240 (457)
T KOG1250|consen 178 KRLAKE-N------GLTYIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVG--GGGLIAGIATGVKRVG 240 (457)
T ss_pred HHHHHh-c------CceecCCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecC--CchhHHHHHHHHHHhC
Confidence 888777 2 56677899974 344444444446677554 2788888888887643
No 379
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=20.92 E-value=1.7e+02 Score=29.91 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCccchHHHHHHHHHh---cCC----CEEEEcCcC---CCCcccccchhHHHH-----hC-CCceeechhhHHH-HHH
Q psy8699 2 GDQGYWTGFFQSSPSQLL---SSQ----GGVLFGEDV---GFGGVFRCSLGLQEK-----YG-KHRVFNTPLSEQG-IVG 64 (325)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~---~~~----~vv~~~~D~---~~~g~~~~~~~~~~~-----~~-p~r~~~~gIaE~~-~v~ 64 (325)
|-|-.+.-|.+++.++.. ... |.+++++=+ +-+| ..|.++ ++ ..-.|..||-|.- ++.
T Consensus 67 GGq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~~qig~-----krLv~kara~G~~I~gvvIsAGIP~le~A~E 141 (717)
T COG4981 67 GGQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIGG-----KRLVQKARASGAPIDGVVISAGIPSLEEAVE 141 (717)
T ss_pred CcccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhhhcCCh-----HHHHHHHHhcCCCcceEEEecCCCcHHHHHH
Confidence 456677788888888432 222 245554433 1111 223222 10 2246667775432 233
Q ss_pred HHHHHhccCCeEEEEecccccHHHHHHHHHHH--HhhcccccCCceeccceEEeccCccCCCCCCCCChhHH--------
Q psy8699 65 FGIGLAVSGATAIAEIQFADYIFPAFDQIVNE--AAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPE-------- 134 (325)
Q Consensus 65 ~a~GlA~~G~~p~~~it~~~F~~ra~dqi~~~--~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~-------- 134 (325)
...-|..-|+ |+++ |-+.. .|||+.- +++.+ |. ++ +++--. .|.+|.|||-+|+
T Consensus 142 lI~~L~~~G~-~yv~--fKPGt---IeqI~svi~IAka~-P~---~p---Iilq~e---gGraGGHHSweDld~llL~tY 205 (717)
T COG4981 142 LIEELGDDGF-PYVA--FKPGT---IEQIRSVIRIAKAN-PT---FP---IILQWE---GGRAGGHHSWEDLDDLLLATY 205 (717)
T ss_pred HHHHHhhcCc-eeEE--ecCCc---HHHHHHHHHHHhcC-CC---Cc---eEEEEe---cCccCCccchhhcccHHHHHH
Confidence 3333333343 4444 33433 4555533 34322 33 22 222111 2234569999875
Q ss_pred HHHcCCCCcEEEeeC---CHHHHHHHH
Q psy8699 135 AYFAHTPGIKVVIPR---GPYKAKGLL 158 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~---~~~e~~~~~ 158 (325)
+=+|+-+|+.++.-+ ++.++...+
T Consensus 206 s~lR~~~NIvl~vGgGiGtp~~aa~YL 232 (717)
T COG4981 206 SELRSRDNIVLCVGGGIGTPDDAAPYL 232 (717)
T ss_pred HHHhcCCCEEEEecCCcCChhhccccc
Confidence 346788999887643 344444433
No 380
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.87 E-value=6.2e+02 Score=22.77 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhh
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~ 281 (325)
..++.|++.|.......+.++.+ +..-.|.- +-..+.+.+.+.++..+- +++-......|+|..+.+++.-
T Consensus 218 ~~~l~i~G~g~~~~~~~~~~~~~----~~~~~V~~---~g~v~~~~~~~~~~~ad~-~i~ps~~~~e~~g~~~~Ea~~~- 288 (357)
T cd03795 218 DAPLVIVGEGPLEAELEALAAAL----GLLDRVRF---LGRLDDEEKAALLAACDV-FVFPSVERSEAFGIVLLEAMAF- 288 (357)
T ss_pred CcEEEEEeCChhHHHHHHHHHhc----CCcceEEE---cCCCCHHHHHHHHHhCCE-EEeCCcccccccchHHHHHHHc-
Confidence 45677777776555444433322 33333332 233456667777766664 4443322235677777777753
Q ss_pred ccccCCCCeEEEcccCCCCcccc---cccCC----CCHHHHHHHHHHHh
Q psy8699 282 CFLSLEAPIRRVTGYDTPFPHIF---EPFYI----PDKWRCLEAVKQIT 323 (325)
Q Consensus 282 ~~~~~~~~v~~~~g~~~~~~~~~---~~~~l----~~~~~I~~~i~~~~ 323 (325)
+.|+..- ..+ ...+.. ...|+ -+.+++++++.+++
T Consensus 289 -----g~Pvi~~-~~~-~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 289 -----GKPVIST-EIG-TGGSYVNLHGVTGLVVPPGDPAALAEAIRRLL 330 (357)
T ss_pred -----CCCEEec-CCC-CchhHHhhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 3566422 111 111211 11221 16889999998876
No 381
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.72 E-value=2.3e+02 Score=25.86 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=45.4
Q ss_pred CCccchHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCC---ceeec---hhhHHHHHHHHHHHhccCC
Q psy8699 4 QGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH---RVFNT---PLSEQGIVGFGIGLAVSGA 74 (325)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~---r~~~~---gIaE~~~v~~a~GlA~~G~ 74 (325)
|-..-.+.+++.++.++..++++++---+.+|+|+.....++.+ ++ +++|+ +..+..++-.|+=+...|.
T Consensus 61 ~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~-~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~ 136 (275)
T TIGR00762 61 QPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMV-DEAKVTVIDSKSASMGLGLLVLEAAKLAEEGK 136 (275)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhC-CCCCEEEECChHHHHHHHHHHHHHHHHHHcCC
Confidence 33445778888888888888999888777667777566666777 54 35553 4445555555555555554
No 382
>KOG0572|consensus
Probab=20.56 E-value=1.6e+02 Score=28.59 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=24.4
Q ss_pred CcEEEEecCCcCCChHHHHHHHHHhhc
Q psy8699 256 GRVIIAHEAPLTSGFGAELAASIQDKC 282 (325)
Q Consensus 256 ~~vivvEe~~~~gglg~~v~~~l~e~~ 282 (325)
|+|++||++.+.|--...|...+.|++
T Consensus 357 KrvvlVDDSIVRGtTs~~IVkmlreaG 383 (474)
T KOG0572|consen 357 KRVVLVDDSIVRGTTSSPIVKMLREAG 383 (474)
T ss_pred ceEEEEecceeccCchHHHHHHHHHcC
Confidence 789999999999999999999998875
No 383
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=20.54 E-value=2.9e+02 Score=27.12 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=37.5
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecC
Q psy8699 203 TDVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEA 264 (325)
Q Consensus 203 ~dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~ 264 (325)
.++.|+..+. ....|++.++.|+++ |+.+.+ +... +++ .+.+..+.+ +...++++-+.
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~-Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~~ 385 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQ-NIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGDN 385 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhC-CCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEech
Confidence 4677777665 456788999999998 999876 3332 334 234444433 34577777763
No 384
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.53 E-value=2.6e+02 Score=25.63 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 216 VLREVAGLAKEQLGVSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 216 ~a~~A~~~L~~~~gi~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
...+-.+.+.+..++.+-+.+.+. =.+++.+.+.++ .+..+|+-+=+.
T Consensus 114 ~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L-~~~p~v~giK~s 163 (292)
T PRK03170 114 GLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARL-AEHPNIVGIKEA 163 (292)
T ss_pred HHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHH-HcCCCEEEEEEC
Confidence 344444444332266777777764 356777777766 456677777664
No 385
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=20.49 E-value=8.4e+02 Score=24.12 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=60.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc-----------ccCCCHHHH-HHHHhcc----CcEEEEecC
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS-----------ILPWDRETV-FQSARKT----GRVIIAHEA 264 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~-----------l~P~d~~~l-~~~~~~~----~~vivvEe~ 264 (325)
.|....|.+.+|+-..+++|+=++.++.|..+ +|-.++ ..|.|...+ .+..++. +++|.-=+|
T Consensus 13 ~g~~~gI~sVCsahp~VieAAl~~a~~~~~pv-LiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDH 91 (426)
T PRK15458 13 AGKTNGIYAVCSAHPLVLEAAIRYALANDSPL-LIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDH 91 (426)
T ss_pred cCCCceEEEecCCCHHHHHHHHHHHhhcCCcE-EEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCC
Confidence 46788999999999999999665555424333 222222 455555433 3333332 255555555
Q ss_pred CcCCCh--------------HHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 265 PLTSGF--------------GAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 265 ~~~ggl--------------g~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
+|- +..+.....++||. ++ -.|.......+..-| +.+.|++++.+|.+
T Consensus 92 ---LGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~-------kI-HLD~Sm~cagdp~pL-~d~~vA~Raa~L~~ 153 (426)
T PRK15458 92 ---LGPNRWQNLPAAQAMANADDLIKSYVAAGFK-------KI-HLDCSMSCADDPIPL-TDEIVAERAARLAK 153 (426)
T ss_pred ---CCCccccCCCHHHHHHHHHHHHHHHHHcCCc-------eE-EecCCCCCCCCCCCC-ChHHHHHHHHHHHH
Confidence 343 33333444445542 22 223223333344456 88888888887765
No 386
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=20.41 E-value=2.7e+02 Score=18.38 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=37.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHH
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~ 272 (325)
+++.+. .....+.+|...|++. +++...+++..-.. -.+.+.+.... +=.++++... ..||+..
T Consensus 2 v~ly~~-~~Cp~C~~~~~~L~~~-~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~-~igg~~~ 66 (72)
T cd02066 2 VVVFSK-STCPYCKRAKRLLESL-GIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGE-FIGGYDD 66 (72)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHc-CCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCE-EEecHHH
Confidence 445554 3457889999999998 99998888876322 11223332221 2235666544 5677743
No 387
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.29 E-value=5.1e+02 Score=23.94 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=43.3
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEecccccccccccCCCCC---CcccCCCc-eeEeeeCCcEEEEEechhHHHHHH
Q psy8699 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPED---YYELPLDK-ADILVAGTDVTLIGWGTQVHVLRE 219 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~---~~~~~~gk-~~~~~~g~dv~ii~~G~~~~~a~~ 219 (325)
.++.|.+.+|+..+++++-+.+.|+.++-- ..+. .+.+. ...+.+.+ ...+......+-+..|.......+
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~Gg----Gsnl-l~~d~g~~gvvI~l~~~l~~i~~~~~~v~v~aG~~~~~L~~ 107 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLGN----GSNL-LVRDGGIRGVVIRLGKGLNEIEVEGNRITAGAGAPLIKLAR 107 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEeC----CceE-EecCCCcceEEEEecCCcceEEecCCEEEEECCCcHHHHHH
Confidence 578899999999999999989999988432 1110 01111 11111222 222333345566778877776555
Q ss_pred HHH
Q psy8699 220 VAG 222 (325)
Q Consensus 220 A~~ 222 (325)
.+.
T Consensus 108 ~l~ 110 (298)
T PRK13905 108 FAA 110 (298)
T ss_pred HHH
Confidence 443
No 388
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.23 E-value=2.7e+02 Score=23.32 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=49.2
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 200 VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 200 ~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
....++.+++.|+....|......|..- |+.+..+.-.. ...+.+.+-+|++- ..|-..++...+.
T Consensus 31 ~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~---------~~~~~~~D~vI~iS----~sG~t~~~i~~~~ 96 (179)
T cd05005 31 LNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVGETT---------TPAIGPGDLLIAIS----GSGETSSVVNAAE 96 (179)
T ss_pred HhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeCCCC---------CCCCCCCCEEEEEc----CCCCcHHHHHHHH
Confidence 3446899999999999999998888766 88777654211 11233445555552 2455555555543
Q ss_pred hhccccCCCCeEEEcccC
Q psy8699 280 DKCFLSLEAPIRRVTGYD 297 (325)
Q Consensus 280 e~~~~~~~~~v~~~~g~~ 297 (325)
... ..+.++..+++.+
T Consensus 97 ~ak--~~g~~iI~IT~~~ 112 (179)
T cd05005 97 KAK--KAGAKVVLITSNP 112 (179)
T ss_pred HHH--HCCCeEEEEECCC
Confidence 322 1246676665543
Done!