Query psy8699
Match_columns 325
No_of_seqs 127 out of 1452
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 16:58:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w85_B Pyruvate dehydrogenase 100.0 4.6E-64 1.6E-68 472.1 31.3 314 8-325 7-324 (324)
2 2bfd_B 2-oxoisovalerate dehydr 100.0 3.4E-64 1.2E-68 475.9 29.8 314 9-325 26-342 (342)
3 1umd_B E1-beta, 2-OXO acid deh 100.0 1.4E-63 4.7E-68 468.9 30.6 314 8-325 8-324 (324)
4 1qs0_B 2-oxoisovalerate dehydr 100.0 7.6E-62 2.6E-66 459.6 28.0 311 8-324 9-337 (338)
5 1ik6_A Pyruvate dehydrogenase; 100.0 9.8E-62 3.3E-66 462.8 27.3 310 9-325 56-369 (369)
6 2ozl_B PDHE1-B, pyruvate dehyd 100.0 3.1E-60 1E-64 448.4 30.8 311 9-324 20-340 (341)
7 3mos_A Transketolase, TK; thia 100.0 1.5E-53 5E-58 430.6 26.8 286 9-320 318-615 (616)
8 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3.9E-52 1.3E-56 421.8 30.3 290 8-324 319-620 (621)
9 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 3.2E-52 1.1E-56 422.7 28.7 291 7-324 321-623 (629)
10 3m49_A Transketolase; alpha-be 100.0 1.9E-48 6.5E-53 396.0 16.3 283 10-323 385-690 (690)
11 3rim_A Transketolase, TK; TPP, 100.0 2.5E-48 8.6E-53 395.0 16.8 285 9-324 380-699 (700)
12 3l84_A Transketolase; TKT, str 100.0 5.5E-48 1.9E-52 389.6 19.1 273 10-321 344-631 (632)
13 3uk1_A Transketolase; structur 100.0 5.1E-48 1.8E-52 393.6 19.0 283 9-324 400-711 (711)
14 1gpu_A Transketolase; transfer 100.0 1.1E-47 3.7E-52 391.9 15.3 291 5-325 353-666 (680)
15 3kom_A Transketolase; rossmann 100.0 1.1E-47 3.6E-52 389.7 14.9 284 9-323 360-663 (663)
16 2r8o_A Transketolase 1, TK 1; 100.0 3.1E-47 1.1E-51 388.1 15.5 288 5-324 352-664 (669)
17 1itz_A Transketolase; calvin c 100.0 3.8E-46 1.3E-50 380.3 21.1 284 5-321 363-674 (675)
18 2e6k_A Transketolase; structur 100.0 4.7E-46 1.6E-50 378.4 16.7 280 9-323 354-651 (651)
19 1r9j_A Transketolase; domains, 100.0 7.5E-46 2.6E-50 377.7 17.4 280 9-324 357-656 (673)
20 2jgd_A 2-oxoglutarate dehydrog 100.0 1.4E-43 4.6E-48 369.0 21.2 297 10-320 597-930 (933)
21 2yic_A 2-oxoglutarate decarbox 100.0 1.6E-43 5.3E-48 366.6 19.8 275 16-301 529-847 (868)
22 2xt6_A 2-oxoglutarate decarbox 100.0 6.6E-43 2.2E-47 370.0 19.7 275 16-301 774-1092(1113)
23 2qtc_A Pyruvate dehydrogenase 100.0 1.8E-39 6.1E-44 336.9 17.9 293 8-324 496-857 (886)
24 3ahc_A Phosphoketolase, xylulo 100.0 7.6E-37 2.6E-41 312.5 16.7 296 8-323 433-785 (845)
25 1yd7_A 2-keto acid:ferredoxin 100.0 5.1E-29 1.7E-33 239.5 9.1 283 8-324 23-395 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.9 1.7E-20 5.9E-25 201.2 26.4 292 8-323 7-382 (1231)
27 3ju3_A Probable 2-oxoacid ferr 99.7 9.5E-17 3.3E-21 128.4 10.5 106 201-324 12-117 (118)
28 1q6z_A BFD, BFDC, benzoylforma 95.4 0.56 1.9E-05 45.7 16.8 152 8-177 2-163 (528)
29 1v5e_A Pyruvate oxidase; oxido 95.3 0.15 5.1E-06 50.8 12.5 236 7-264 3-279 (590)
30 2pan_A Glyoxylate carboligase; 95.3 0.46 1.6E-05 47.4 16.1 154 8-176 27-189 (616)
31 2q28_A Oxalyl-COA decarboxylas 95.2 0.12 4E-06 51.1 11.1 161 1-177 1-171 (564)
32 2uz1_A Benzaldehyde lyase; thi 94.0 0.47 1.6E-05 46.7 12.2 152 8-175 4-164 (563)
33 1ybh_A Acetolactate synthase, 93.9 0.43 1.5E-05 47.3 11.7 154 6-177 10-174 (590)
34 1ozh_A ALS, acetolactate synth 93.8 0.71 2.4E-05 45.5 13.2 152 8-177 11-172 (566)
35 1t9b_A Acetolactate synthase, 93.2 1.3 4.4E-05 44.8 14.1 151 8-176 82-243 (677)
36 2c31_A Oxalyl-COA decarboxylas 93.1 0.52 1.8E-05 46.4 10.8 157 5-177 7-173 (568)
37 3eya_A Pyruvate dehydrogenase 93.1 1 3.5E-05 44.2 12.9 154 8-177 3-164 (549)
38 2wvg_A PDC, pyruvate decarboxy 93.0 1.5 5.1E-05 43.1 14.0 151 8-177 3-171 (568)
39 2vbi_A Pyruvate decarboxylase; 92.9 1.1 3.6E-05 44.2 12.7 151 8-177 3-171 (566)
40 2iht_A Carboxyethylarginine sy 92.3 0.52 1.8E-05 46.5 9.6 153 7-177 11-173 (573)
41 4feg_A Pyruvate oxidase; carba 92.2 1 3.5E-05 44.8 11.6 157 6-177 9-173 (603)
42 2nxw_A Phenyl-3-pyruvate decar 92.0 2.6 8.9E-05 41.4 14.3 159 6-179 19-190 (565)
43 2pgn_A Cyclohexane-1,2-dione h 92.0 0.82 2.8E-05 45.3 10.7 151 8-177 4-167 (589)
44 3hww_A 2-succinyl-5-enolpyruvy 90.6 1.5 5.3E-05 43.0 11.0 152 8-175 8-171 (556)
45 2x7j_A 2-succinyl-5-enolpyruvy 89.0 3.1 0.00011 41.2 11.8 153 8-176 31-199 (604)
46 2vk8_A Pyruvate decarboxylase 87.7 8.6 0.00029 37.5 13.9 152 7-177 3-172 (563)
47 2vbf_A Branched-chain alpha-ke 86.3 5.7 0.0002 38.9 11.8 149 8-176 25-191 (570)
48 3lq1_A 2-succinyl-5-enolpyruvy 85.5 4.8 0.00017 39.6 10.8 152 8-175 11-178 (578)
49 2lqo_A Putative glutaredoxin R 83.5 2.5 8.5E-05 31.0 5.9 74 203-282 4-83 (92)
50 1t9b_A Acetolactate synthase, 82.8 2.6 8.8E-05 42.6 7.5 113 49-170 503-631 (677)
51 1ovm_A Indole-3-pyruvate decar 81.5 10 0.00036 36.8 11.3 154 7-177 4-172 (552)
52 1aba_A Glutaredoxin; electron 74.1 5.8 0.0002 28.0 5.3 67 205-273 2-82 (87)
53 3lfh_A Manxa, phosphotransfera 72.6 26 0.00089 27.7 9.3 108 204-321 5-120 (144)
54 3rpe_A MDAB, modulator of drug 72.2 24 0.00081 30.1 9.5 62 215-280 47-108 (218)
55 3ipz_A Monothiol glutaredoxin- 71.9 4.9 0.00017 30.1 4.6 69 202-273 17-90 (109)
56 2q62_A ARSH; alpha/beta, flavo 71.7 15 0.00051 32.0 8.3 64 214-280 51-123 (247)
57 3eya_A Pyruvate dehydrogenase 68.8 12 0.00042 36.4 7.8 101 61-170 410-523 (549)
58 2vzf_A NADH-dependent FMN redu 68.5 13 0.00045 30.7 7.0 67 211-279 16-93 (197)
59 1pdo_A Mannose permease; phosp 66.5 38 0.0013 26.2 9.0 109 204-321 3-119 (135)
60 2wci_A Glutaredoxin-4; redox-a 66.0 6.4 0.00022 31.0 4.2 67 203-272 35-106 (135)
61 3zyw_A Glutaredoxin-3; metal b 65.0 8.4 0.00029 29.0 4.6 68 202-272 15-87 (111)
62 2c31_A Oxalyl-COA decarboxylas 64.8 16 0.00056 35.6 7.9 112 49-170 416-541 (568)
63 3bed_A PTS system, IIA compone 64.1 42 0.0015 26.2 8.9 109 204-321 7-120 (142)
64 2a5l_A Trp repressor binding p 64.0 17 0.00059 29.6 6.9 68 210-280 16-96 (200)
65 1wik_A Thioredoxin-like protei 63.7 5.4 0.00019 29.7 3.3 68 202-272 14-86 (109)
66 3m49_A Transketolase; alpha-be 63.5 36 0.0012 34.3 10.2 89 75-173 173-270 (690)
67 4feg_A Pyruvate oxidase; carba 62.6 16 0.00055 36.0 7.4 113 49-170 410-540 (603)
68 3fni_A Putative diflavin flavo 61.9 20 0.00069 28.6 6.7 57 211-271 16-72 (159)
69 3u7r_A NADPH-dependent FMN red 61.4 19 0.00063 30.0 6.5 66 212-279 16-91 (190)
70 2fzv_A Putative arsenical resi 61.1 20 0.0007 31.8 7.1 65 213-279 74-147 (279)
71 1t1v_A SH3BGRL3, SH3 domain-bi 60.7 13 0.00045 26.6 4.9 66 204-273 3-77 (93)
72 2amj_A Modulator of drug activ 60.6 30 0.001 28.8 7.8 60 216-279 35-94 (204)
73 1rw1_A Conserved hypothetical 60.0 13 0.00043 28.1 4.8 49 205-256 2-50 (114)
74 3rdw_A Putative arsenate reduc 59.0 12 0.00042 28.7 4.6 49 205-256 7-55 (121)
75 3l84_A Transketolase; TKT, str 57.7 30 0.001 34.5 8.4 102 62-173 119-239 (632)
76 3uk1_A Transketolase; structur 57.3 23 0.0008 35.8 7.5 89 75-173 188-284 (711)
77 1sqs_A Conserved hypothetical 57.1 44 0.0015 28.3 8.5 69 211-280 15-104 (242)
78 2wem_A Glutaredoxin-related pr 57.0 32 0.0011 26.1 6.7 65 202-272 19-92 (118)
79 3gdw_A Sigma-54 interaction do 56.5 66 0.0023 25.2 8.7 108 204-322 6-125 (139)
80 3hly_A Flavodoxin-like domain; 56.2 29 0.00099 27.6 6.7 56 211-271 12-67 (161)
81 3fz4_A Putative arsenate reduc 55.3 29 0.00098 26.4 6.2 49 205-256 5-53 (120)
82 4dik_A Flavoprotein; TM0755, e 55.0 41 0.0014 31.5 8.4 73 205-279 267-343 (410)
83 3kom_A Transketolase; rossmann 54.5 39 0.0013 33.9 8.6 90 75-173 149-246 (663)
84 1ybh_A Acetolactate synthase, 54.3 17 0.00059 35.6 6.0 114 49-171 416-553 (590)
85 3hww_A 2-succinyl-5-enolpyruvy 54.1 18 0.00061 35.2 6.0 29 142-170 505-533 (556)
86 1ozh_A ALS, acetolactate synth 54.0 20 0.00068 35.0 6.3 113 49-171 410-538 (566)
87 2uz1_A Benzaldehyde lyase; thi 53.8 42 0.0014 32.5 8.6 112 49-170 409-540 (563)
88 2e6k_A Transketolase; structur 53.7 54 0.0018 32.7 9.5 91 75-173 151-247 (651)
89 3l78_A Regulatory protein SPX; 53.5 30 0.001 26.2 6.1 42 212-255 8-49 (120)
90 3f2v_A General stress protein 53.3 44 0.0015 27.7 7.6 62 217-280 19-83 (192)
91 2kok_A Arsenate reductase; bru 52.1 23 0.0008 26.8 5.2 50 204-256 6-55 (120)
92 5nul_A Flavodoxin; electron tr 51.9 21 0.00072 27.3 5.0 44 210-261 9-52 (138)
93 2q28_A Oxalyl-COA decarboxylas 50.7 27 0.00093 33.9 6.7 112 49-170 411-538 (564)
94 3nzn_A Glutaredoxin; structura 50.7 29 0.00099 25.1 5.4 68 203-272 22-94 (103)
95 3mtq_A Putative phosphoenolpyr 50.4 97 0.0033 24.9 10.9 108 203-320 22-135 (159)
96 3gkx_A Putative ARSC family re 49.5 26 0.00088 26.7 5.1 49 205-256 6-54 (120)
97 1rtt_A Conserved hypothetical 49.4 18 0.0006 29.6 4.4 63 215-280 24-97 (193)
98 1t0i_A YLR011WP; FMN binding p 48.9 46 0.0016 26.9 7.0 68 211-279 14-108 (191)
99 1w85_A Pyruvate dehydrogenase 48.7 45 0.0016 30.7 7.5 103 61-172 146-263 (368)
100 3qmx_A Glutaredoxin A, glutare 48.7 20 0.00069 26.1 4.2 67 203-273 16-84 (99)
101 3l4e_A Uncharacterized peptida 48.5 59 0.002 27.2 7.7 54 202-259 27-84 (206)
102 3gx1_A LIN1832 protein; APC633 48.2 92 0.0031 24.0 8.9 109 204-323 6-123 (130)
103 2zki_A 199AA long hypothetical 47.2 74 0.0025 25.7 8.0 68 210-280 14-95 (199)
104 1s3c_A Arsenate reductase; ARS 46.9 22 0.00076 28.0 4.4 48 205-255 4-51 (141)
105 1ydg_A Trp repressor binding p 46.9 28 0.00095 28.7 5.4 68 211-280 18-103 (211)
106 3gx8_A Monothiol glutaredoxin- 46.7 25 0.00086 26.7 4.6 65 202-273 15-91 (121)
107 4bby_A Alkyldihydroxyacetoneph 46.4 89 0.003 31.1 9.8 85 137-222 202-292 (658)
108 1r9j_A Transketolase; domains, 46.2 1.1E+02 0.0039 30.4 10.5 89 75-173 149-247 (673)
109 2fz5_A Flavodoxin; alpha/beta 46.2 35 0.0012 25.6 5.5 60 211-279 11-72 (137)
110 1itz_A Transketolase; calvin c 45.7 84 0.0029 31.4 9.5 90 75-173 160-258 (675)
111 1v5e_A Pyruvate oxidase; oxido 45.7 37 0.0013 33.3 6.7 113 49-171 403-534 (590)
112 3ic4_A Glutaredoxin (GRX-1); s 45.4 29 0.001 24.2 4.6 66 204-272 13-83 (92)
113 3lq1_A 2-succinyl-5-enolpyruvy 45.4 38 0.0013 33.0 6.8 29 142-170 526-554 (578)
114 2pan_A Glyoxylate carboligase; 45.3 21 0.00071 35.2 4.9 114 49-171 432-575 (616)
115 2e85_A Hydrogenase 3 maturatio 44.6 49 0.0017 26.5 6.2 57 204-264 5-67 (159)
116 2ct6_A SH3 domain-binding glut 43.7 39 0.0013 25.0 5.2 62 204-272 9-88 (111)
117 3fvw_A Putative NAD(P)H-depend 43.6 61 0.0021 26.5 6.9 64 214-280 19-92 (192)
118 1cfz_A Hydrogenase 2 maturatio 43.3 26 0.00089 28.3 4.4 57 204-264 2-64 (162)
119 2iht_A Carboxyethylarginine sy 43.1 21 0.00073 34.8 4.6 112 49-170 426-555 (573)
120 3jx9_A Putative phosphoheptose 42.8 62 0.0021 26.4 6.6 85 151-237 24-112 (170)
121 3q2o_A Phosphoribosylaminoimid 42.5 82 0.0028 28.7 8.3 72 201-281 13-97 (389)
122 1gpu_A Transketolase; transfer 42.5 85 0.0029 31.4 9.0 89 75-173 149-247 (680)
123 2ab1_A Hypothetical protein; H 42.0 8.4 0.00029 29.9 1.1 38 199-237 58-97 (122)
124 2r8o_A Transketolase 1, TK 1; 41.8 1E+02 0.0036 30.7 9.5 88 75-172 147-243 (669)
125 1z3e_A Regulatory protein SPX; 41.7 66 0.0022 24.6 6.4 48 205-255 3-50 (132)
126 3lyu_A Putative hydrogenase; t 41.6 43 0.0015 26.0 5.4 57 193-250 9-66 (142)
127 1q6z_A BFD, BFDC, benzoylforma 41.4 44 0.0015 32.1 6.4 113 49-170 392-519 (528)
128 2ark_A Flavodoxin; FMN, struct 41.2 67 0.0023 25.9 6.8 61 211-280 16-77 (188)
129 4hs4_A Chromate reductase; tri 41.0 51 0.0018 27.3 6.1 61 216-279 25-97 (199)
130 2x7j_A 2-succinyl-5-enolpyruvy 40.9 11 0.00037 37.3 2.0 29 142-170 546-574 (604)
131 1t5b_A Acyl carrier protein ph 40.5 1.2E+02 0.0043 24.1 8.4 68 211-280 16-111 (201)
132 3f6r_A Flavodoxin; FMN binding 40.4 56 0.0019 25.1 5.9 63 210-280 12-77 (148)
133 2yan_A Glutaredoxin-3; oxidore 40.0 30 0.001 25.2 4.0 67 203-272 17-88 (105)
134 1d1q_A Tyrosine phosphatase (E 39.6 12 0.00042 30.1 1.9 38 219-265 61-98 (161)
135 3ipr_A PTS system, IIA compone 39.2 1.4E+02 0.0048 23.5 10.0 113 204-320 3-123 (150)
136 1f4p_A Flavodoxin; electron tr 39.0 54 0.0019 25.0 5.6 61 211-279 12-75 (147)
137 3f0i_A Arsenate reductase; str 38.9 26 0.00089 26.6 3.6 49 205-256 6-54 (119)
138 3rh0_A Arsenate reductase; oxi 38.7 42 0.0014 26.7 4.9 81 220-324 66-147 (148)
139 1y1l_A Arsenate reductase (ARS 38.6 42 0.0014 25.6 4.8 81 219-324 43-123 (124)
140 3rhb_A ATGRXC5, glutaredoxin-C 38.5 67 0.0023 23.4 5.9 67 203-273 19-90 (113)
141 2hpv_A FMN-dependent NADH-azor 38.5 1E+02 0.0035 25.1 7.6 66 213-280 19-119 (208)
142 3pu6_A Uncharacterized protein 38.3 47 0.0016 26.6 5.2 56 204-264 4-65 (157)
143 3nyi_A FAT acid-binding protei 37.8 63 0.0022 28.7 6.5 71 3-74 66-146 (297)
144 2bmv_A Flavodoxin; electron tr 37.4 52 0.0018 25.9 5.4 33 206-239 4-36 (164)
145 3h8q_A Thioredoxin reductase 3 36.1 1.1E+02 0.0039 22.3 6.8 67 202-273 16-87 (114)
146 3tem_A Ribosyldihydronicotinam 35.7 90 0.0031 26.4 6.9 66 213-280 17-117 (228)
147 3mos_A Transketolase, TK; thia 35.7 1.7E+02 0.0059 28.8 9.8 101 62-173 126-239 (616)
148 2bfd_A 2-oxoisovalerate dehydr 35.5 85 0.0029 29.2 7.2 25 148-172 255-283 (400)
149 1ycg_A Nitric oxide reductase; 35.4 75 0.0026 28.8 6.8 70 204-278 252-325 (398)
150 1e5d_A Rubredoxin\:oxygen oxid 34.4 1.3E+02 0.0045 27.1 8.3 71 205-280 254-328 (402)
151 2vbi_A Pyruvate decarboxylase; 34.3 46 0.0016 32.3 5.4 27 144-170 500-527 (566)
152 2ohh_A Type A flavoprotein FPR 34.3 77 0.0026 28.8 6.7 69 206-279 259-331 (404)
153 1ovm_A Indole-3-pyruvate decar 33.9 73 0.0025 30.7 6.7 99 61-170 412-526 (552)
154 2q9u_A A-type flavoprotein; fl 33.7 1.3E+02 0.0045 27.3 8.3 70 206-280 259-332 (414)
155 4etn_A LMPTP, low molecular we 33.7 26 0.0009 29.0 3.0 86 219-324 84-177 (184)
156 1p8a_A Protein tyrosine phosph 33.4 12 0.0004 29.7 0.7 86 219-323 52-140 (146)
157 3svl_A Protein YIEF; E. coli C 33.3 41 0.0014 27.7 4.2 64 213-278 19-95 (193)
158 3pl5_A SMU_165, putative uncha 33.1 85 0.0029 28.3 6.5 71 3-74 97-177 (320)
159 1x92_A APC5045, phosphoheptose 32.9 1.1E+02 0.0037 24.8 6.8 25 200-224 43-67 (199)
160 2bfw_A GLGA glycogen synthase; 32.8 1.1E+02 0.0039 24.0 6.9 78 236-324 96-179 (200)
161 2o1x_A 1-deoxy-D-xylulose-5-ph 32.8 1.2E+02 0.0042 29.8 8.3 32 142-173 252-286 (629)
162 3orq_A N5-carboxyaminoimidazol 32.5 1.6E+02 0.0055 26.6 8.6 58 201-263 11-81 (377)
163 2wvg_A PDC, pyruvate decarboxy 32.4 58 0.002 31.5 5.7 27 144-170 508-535 (568)
164 3kkj_A Amine oxidase, flavin-c 32.3 40 0.0014 27.4 4.0 31 203-237 3-33 (336)
165 1fov_A Glutaredoxin 3, GRX3; a 31.9 1.1E+02 0.0038 20.2 6.3 72 204-280 2-74 (82)
166 3okp_A GDP-mannose-dependent a 31.9 2.6E+02 0.0088 24.4 11.8 76 240-324 258-343 (394)
167 3b6i_A Flavoprotein WRBA; flav 31.6 79 0.0027 25.4 5.7 66 210-279 12-92 (198)
168 3hr4_A Nitric oxide synthase, 30.8 47 0.0016 28.3 4.2 71 203-280 40-115 (219)
169 4e4t_A Phosphoribosylaminoimid 30.5 1.3E+02 0.0045 27.8 7.7 60 200-264 33-105 (419)
170 3rim_A Transketolase, TK; TPP, 30.1 2E+02 0.0069 28.9 9.3 91 75-174 169-267 (700)
171 2fvt_A Conserved hypothetical 29.8 20 0.00067 28.3 1.5 37 201-238 66-103 (135)
172 3lrx_A Putative hydrogenase; a 29.7 86 0.003 24.7 5.4 50 201-251 22-72 (158)
173 2vbf_A Branched-chain alpha-ke 28.9 1.2E+02 0.0041 29.3 7.3 100 61-170 429-545 (570)
174 2fek_A Low molecular weight pr 28.7 41 0.0014 27.3 3.3 86 220-324 69-160 (167)
175 2fi9_A Outer membrane protein; 28.6 20 0.00069 27.8 1.3 36 201-237 67-103 (128)
176 3fys_A Protein DEGV; fatty aci 28.4 65 0.0022 29.0 4.9 70 4-74 97-172 (315)
177 2lnd_A De novo designed protei 28.3 65 0.0022 22.9 3.8 33 139-171 25-57 (112)
178 3qhp_A Type 1 capsular polysac 27.8 2E+02 0.0067 21.7 10.7 102 203-324 33-139 (166)
179 2yva_A DNAA initiator-associat 27.2 1.5E+02 0.005 23.8 6.7 26 200-225 39-64 (196)
180 1rli_A Trp repressor binding p 26.2 1.6E+02 0.0054 23.1 6.6 60 218-280 20-96 (184)
181 2x5n_A SPRPN10, 26S proteasome 26.1 1.8E+02 0.0061 23.7 7.0 59 204-265 108-174 (192)
182 3e96_A Dihydrodipicolinate syn 26.1 1.3E+02 0.0046 26.7 6.6 33 229-264 137-169 (316)
183 2cwd_A Low molecular weight ph 26.1 61 0.0021 25.9 3.9 38 219-265 57-94 (161)
184 2wul_A Glutaredoxin related pr 25.6 85 0.0029 23.8 4.4 64 202-272 19-92 (118)
185 2gm2_A Conserved hypothetical 25.5 28 0.00094 27.3 1.6 38 199-237 61-99 (132)
186 1ykg_A SIR-FP, sulfite reducta 25.2 91 0.0031 24.6 4.8 49 207-263 13-65 (167)
187 1id1_A Putative potassium chan 24.8 2.2E+02 0.0076 21.6 7.1 55 203-261 4-78 (153)
188 2o1s_A 1-deoxy-D-xylulose-5-ph 24.8 3.1E+02 0.011 26.8 9.6 26 147-172 255-280 (621)
189 3lcm_A SMU.1420, putative oxid 24.8 1.6E+02 0.0054 23.9 6.4 64 214-280 17-98 (196)
190 2wmy_A WZB, putative acid phos 24.8 53 0.0018 25.9 3.3 39 219-265 54-92 (150)
191 4gi5_A Quinone reductase; prot 24.8 1.6E+02 0.0056 25.8 6.8 66 213-280 38-137 (280)
192 1u6t_A SH3 domain-binding glut 24.7 1.8E+02 0.0062 22.1 6.2 54 217-273 19-81 (121)
193 1u2p_A Ptpase, low molecular w 24.6 47 0.0016 26.6 2.9 51 205-265 38-93 (163)
194 3hh1_A Tetrapyrrole methylase 24.2 43 0.0015 25.1 2.5 35 200-235 77-114 (117)
195 3d0c_A Dihydrodipicolinate syn 24.0 1.5E+02 0.0052 26.4 6.5 31 229-262 137-167 (314)
196 2nxw_A Phenyl-3-pyruvate decar 23.8 1.1E+02 0.0039 29.4 6.1 34 136-170 502-536 (565)
197 3cpk_A Uncharacterized protein 23.5 32 0.0011 27.6 1.7 35 202-237 88-123 (150)
198 3sho_A Transcriptional regulat 23.4 2.4E+02 0.0083 22.2 7.3 36 200-236 37-72 (187)
199 2pgn_A Cyclohexane-1,2-dione h 23.2 30 0.001 33.8 1.8 113 49-171 414-542 (589)
200 1vli_A Spore coat polysacchari 23.1 4.5E+02 0.015 24.2 12.4 73 204-278 159-239 (385)
201 1jf8_A Arsenate reductase; ptp 22.9 25 0.00085 27.2 0.9 83 219-324 47-130 (131)
202 1d4a_A DT-diaphorase, quinone 22.6 1.9E+02 0.0066 24.9 6.8 66 213-280 18-118 (273)
203 2wqp_A Polysialic acid capsule 22.6 4.4E+02 0.015 23.9 13.6 72 204-278 149-227 (349)
204 3k5i_A Phosphoribosyl-aminoimi 22.5 2.6E+02 0.009 25.5 8.1 57 202-264 24-95 (403)
205 2yxg_A DHDPS, dihydrodipicolin 22.4 1.8E+02 0.0061 25.4 6.6 36 229-264 126-163 (289)
206 2ozl_A PDHE1-A type I, pyruvat 22.2 1.5E+02 0.005 27.2 6.2 101 62-171 145-258 (365)
207 1o97_C Electron transferring f 22.0 2.8E+02 0.0097 23.9 7.8 71 204-278 58-138 (264)
208 3kgw_A Alanine-glyoxylate amin 21.9 3E+02 0.01 24.0 8.2 21 245-265 167-187 (393)
209 2wkj_A N-acetylneuraminate lya 21.9 1.9E+02 0.0063 25.6 6.6 33 230-263 139-173 (303)
210 3n8i_A Low molecular weight ph 21.8 79 0.0027 25.2 3.8 38 219-265 58-95 (157)
211 4ici_A Putative flavoprotein; 21.8 1.3E+02 0.0044 24.0 5.1 73 206-281 16-113 (171)
212 3mcu_A Dipicolinate synthase, 21.5 53 0.0018 27.7 2.7 35 202-237 5-41 (207)
213 1xky_A Dihydrodipicolinate syn 21.5 1.8E+02 0.0063 25.6 6.5 35 229-264 138-174 (301)
214 3tak_A DHDPS, dihydrodipicolin 21.3 2E+02 0.0067 25.2 6.6 62 202-264 96-163 (291)
215 3g8r_A Probable spore coat pol 21.3 4.7E+02 0.016 23.8 12.9 64 204-269 136-206 (350)
216 2ehh_A DHDPS, dihydrodipicolin 21.2 1.9E+02 0.0065 25.4 6.5 63 202-264 95-163 (294)
217 1y7p_A Hypothetical protein AF 21.1 2.2E+02 0.0076 24.2 6.5 85 202-293 87-177 (223)
218 2r8w_A AGR_C_1641P; APC7498, d 21.0 1.9E+02 0.0064 26.0 6.6 39 207-246 107-146 (332)
219 3p04_A Uncharacterized BCR; SE 20.9 1.1E+02 0.0038 22.0 4.0 30 140-170 4-33 (87)
220 1vk8_A Hypothetical protein TM 20.9 1.5E+02 0.005 22.2 4.8 50 204-254 19-71 (106)
221 2iuy_A Avigt4, glycosyltransfe 20.8 3.6E+02 0.012 23.1 8.4 104 202-323 188-306 (342)
222 1o5k_A DHDPS, dihydrodipicolin 20.5 2E+02 0.0069 25.4 6.6 36 229-264 138-175 (306)
223 1f6k_A N-acetylneuraminate lya 20.5 2E+02 0.007 25.1 6.6 35 229-264 130-166 (293)
224 2l17_A Synarsc, arsenate reduc 20.3 40 0.0014 26.1 1.6 84 219-324 48-131 (134)
225 3cpr_A Dihydrodipicolinate syn 20.2 2E+02 0.0069 25.3 6.5 35 229-264 142-178 (304)
226 4a5l_A Thioredoxin reductase; 20.2 2.1E+02 0.0071 24.3 6.6 44 201-248 151-194 (314)
227 3fwz_A Inner membrane protein 20.1 1.2E+02 0.0042 22.9 4.5 32 203-238 8-39 (140)
No 1
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=4.6e-64 Score=472.11 Aligned_cols=314 Identities=40% Similarity=0.679 Sum_probs=277.5
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
..++++|.+++++|++++++++|++ .+|+++.+.+|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|+
T Consensus 7 ~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~~~F~ 86 (324)
T 1w85_B 7 QAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFV 86 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSSGGGG
T ss_pred HHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecchhHH
Confidence 4566777779999999999999998 456666688999999889999999999999999999999999999986899999
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD 166 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~ 166 (325)
+|++|||++++++++|+..+...++ ++++.+.|..+.|++||+++|+++++++||++|++|+|++|++.++++|+++++
T Consensus 87 ~~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~~~~ 165 (324)
T 1w85_B 87 YEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDND 165 (324)
T ss_dssp GGTHHHHHTTGGGHHHHTTTSSCCC-CEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhccCCCcCC-EEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 9999999999998777755444455 555555565667788888999999999999999999999999999999999999
Q ss_pred cEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699 167 PCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE 246 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~ 246 (325)
|++||+||+++|...+.++.+++.+++||++++++|.|++||++|+++..|++|++.|+++ |++++||++++++|||++
T Consensus 166 Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~ 244 (324)
T 1w85_B 166 PVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKE-GISAEVVDLRTVQPLDIE 244 (324)
T ss_dssp CEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHT-TCCEEEEECSEEESCCHH
T ss_pred CEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEEeeeecCCCHH
Confidence 9999999999987656666556778899999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc---ccccccCCCCHHHHHHHHHHHh
Q psy8699 247 TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP---HIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 247 ~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~---~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
.|.++++++++++++|||...|||+++|++++.+.++..++.|+.++ |.++.|. .+++++++ |+++|+++|++++
T Consensus 245 ~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~v-g~~d~~~~~~~l~~~~gl-~~~~I~~~i~~~l 322 (324)
T 1w85_B 245 TIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRV-AAPDTVYPFAQAESVWLP-NFKDVIETAKKVM 322 (324)
T ss_dssp HHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEE-EECSSSSCCGGGHHHHSC-CHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEE-ecCCcCCCcHHHHHHhCc-CHHHHHHHHHHHh
Confidence 99999999999999999988999999999999987665566789888 5544332 45677788 9999999999999
Q ss_pred hC
Q psy8699 324 RY 325 (325)
Q Consensus 324 ~~ 325 (325)
+|
T Consensus 323 ~~ 324 (324)
T 1w85_B 323 NF 324 (324)
T ss_dssp TC
T ss_pred hC
Confidence 87
No 2
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=3.4e-64 Score=475.93 Aligned_cols=314 Identities=66% Similarity=1.181 Sum_probs=275.9
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~r 88 (325)
.++++|.+++++|++++++++|++.+|+++.+.+|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|++|
T Consensus 26 a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf~~F~~~ 105 (342)
T 2bfd_B 26 SVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFP 105 (342)
T ss_dssp HHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECSSGGGCGG
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEecchhHHHH
Confidence 34445555899999999999999865667778999999989999999999999999999999999999997689999999
Q ss_pred HHHHHHHHHhhcccccCCceec-cceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCc
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSC-GNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDP 167 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~-~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~P 167 (325)
++|||++++|+++|+..+...+ + ++++.+.+..++|+|||+++|+++++++||++|++|+|++|++.++++|+++++|
T Consensus 106 a~dqi~~~~a~~~~~~~g~~~~~p-vv~~~~~~g~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~P 184 (342)
T 2bfd_B 106 AFDQIVNEAAKYRYRSGDLFNCGS-LTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNP 184 (342)
T ss_dssp GHHHHHTTGGGHHHHTTTSSCCTT-EEEEEEESCCSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHhhhcCCccCCC-EEEEEecCCCCCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999976655544 4 5565555444578999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHH
Q psy8699 168 CIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET 247 (325)
Q Consensus 168 v~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~ 247 (325)
++||+|++++|...+.++.+++.+++||++++++|.|++||++|+++..|++|++.|++++|++++||++++++|||.+.
T Consensus 185 v~i~~p~~l~r~~~~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~~l~P~d~~~ 264 (342)
T 2bfd_B 185 CIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDT 264 (342)
T ss_dssp EEEEEEGGGTTSCCEEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHH
T ss_pred EEEEecchhcCCCCCCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeeeecCCCCHHH
Confidence 99999999998866666655677889999999999999999999999999999999987559999999999999999999
Q ss_pred HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC-CCcc-cccccCCCCHHHHHHHHHHHhhC
Q psy8699 248 VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT-PFPH-IFEPFYIPDKWRCLEAVKQITRY 325 (325)
Q Consensus 248 l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~-~~~~-~~~~~~l~~~~~I~~~i~~~~~~ 325 (325)
|+++++++++++++||+...|||+++|++++.+.++..+..|+.++ |.++ ++++ +++++++ |+++|+++|+++++|
T Consensus 265 i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~v-g~~d~~~~~~l~~~~gl-~~~~I~~~i~~~l~~ 342 (342)
T 2bfd_B 265 ICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV-CGYDTPFPHIFEPFYIP-DKWKCYDALRKMINY 342 (342)
T ss_dssp HHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEE-EECSSCCCSTTHHHHSC-CHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEE-ecCCCCChHHHHHHHCc-CHHHHHHHHHHHhcC
Confidence 9999999999999999988999999999999887654456788888 5544 4443 4566777 999999999999987
No 3
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.4e-63 Score=468.94 Aligned_cols=314 Identities=45% Similarity=0.700 Sum_probs=275.9
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
..+.++|.+++++|++++++++|++ .+++++.+.+|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|+
T Consensus 8 ~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t~~~F~ 87 (324)
T 1umd_B 8 QALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYI 87 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSSGGGC
T ss_pred HHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEeccHhHH
Confidence 4556666669999999999999998 456666678999999889999999999999999999999999999986899999
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD 166 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~ 166 (325)
+|++|||++++++++|+..+...++ ++++.+.|..+.|++||+++|+++++++||++|++|+|++|++.++++++++++
T Consensus 88 ~~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~ 166 (324)
T 1umd_B 88 FPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDED 166 (324)
T ss_dssp GGGHHHHHHTTTTHHHHTTTSSCCC-CEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhcCCCCcCC-EEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHhcCC
Confidence 9999999999998766654444444 555554555667788888999999999999999999999999999999999999
Q ss_pred cEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699 167 PCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE 246 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~ 246 (325)
|+++|+||+++|...++++.+++.+++||++++++|.|++||++|++++.|++|++.|+++ |++++||++++++|||.+
T Consensus 167 Pv~i~~p~~l~~~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~ 245 (324)
T 1umd_B 167 PVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKA-GVSAEVLDLRTLMPWDYE 245 (324)
T ss_dssp CEEEEEEGGGSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHT-TCCEEEEECCEEETCCHH
T ss_pred CEEEEechHhcCCCCCCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEEeceecCCCHH
Confidence 9999999999987666676666778899999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCC-c-ccccccCCCCHHHHHHHHHHHhh
Q psy8699 247 TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPF-P-HIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 247 ~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~-~-~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
.++++++++++++++||+...|||+++|++++.+.++..++.|+.++ |.++.| + .+++.+++ |+++|+++++++++
T Consensus 246 ~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~v-g~~d~~~~~~l~~~~g~-~~~~I~~~i~~~l~ 323 (324)
T 1umd_B 246 AVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRV-TGFDTPYPYAQDKLYLP-TVTRILNAAKRALD 323 (324)
T ss_dssp HHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEE-EECSSCCCSTTHHHHSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEE-eCCCCCCCHHHHHHhCc-CHHHHHHHHHHHhh
Confidence 99999999999999999988999999999999987655566789888 554433 2 25566777 99999999999998
Q ss_pred C
Q psy8699 325 Y 325 (325)
Q Consensus 325 ~ 325 (325)
|
T Consensus 324 ~ 324 (324)
T 1umd_B 324 Y 324 (324)
T ss_dssp C
T ss_pred C
Confidence 7
No 4
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=7.6e-62 Score=459.58 Aligned_cols=311 Identities=48% Similarity=0.829 Sum_probs=271.1
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI 86 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~ 86 (325)
..++++|.+++++|++++++++|++ .+++++.+..|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|+
T Consensus 9 ~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~~~F~ 88 (338)
T 1qs0_B 9 QALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYF 88 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSCGGGC
T ss_pred HHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEeccHhHH
Confidence 4556666669999999999999998 566677789999999889999999999999999999999999999976899999
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD 166 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~ 166 (325)
+|++|||++++|+++|+..+...++ ++++.+.+..++|++||+++|+++++++|||+|++|+|++|+++++++|+++++
T Consensus 89 ~~a~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~~g~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~~~ 167 (338)
T 1qs0_B 89 YPASDQIVSEMARLRYRSAGEFIAP-LTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDD 167 (338)
T ss_dssp GGGHHHHHTTTTTHHHHTTTSSCCC-CEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCC-EEEEEeCCCCCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCC
Confidence 9999999999999988766544555 666655555567999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccccc----------------CCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCC
Q psy8699 167 PCIFFEPKVLYRAAVE----------------DVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGV 230 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~----------------~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi 230 (325)
|++||+|++++|...+ .++..++.+++||++++++|.|++||++|+++..|++|++. + |+
T Consensus 168 Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~---~-Gi 243 (338)
T 1qs0_B 168 PVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE---S-GV 243 (338)
T ss_dssp CEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH---H-CC
T ss_pred cEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH---c-CC
Confidence 9999999999987655 44444566789999999999999999999999999999998 5 99
Q ss_pred cEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcc-cccccCC
Q psy8699 231 SCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPH-IFEPFYI 309 (325)
Q Consensus 231 ~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~-~~~~~~l 309 (325)
+++||++++++|||.+.|.++++++++++++||+...|||+++|++++.+.++..++.|+.+++..+.++++ +.+.+++
T Consensus 244 ~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~l~~~~g~ 323 (338)
T 1qs0_B 244 DAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQEWAYFP 323 (338)
T ss_dssp CCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCSTTHHHHSC
T ss_pred CEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHHHHHHHCC
Confidence 999999999999999999999999999999999988999999999999887653455788889443443443 4566777
Q ss_pred CCHHHHHHHHHHHhh
Q psy8699 310 PDKWRCLEAVKQITR 324 (325)
Q Consensus 310 ~~~~~I~~~i~~~~~ 324 (325)
++++|+++|+++++
T Consensus 324 -~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 324 -GPSRVGAALKKVME 337 (338)
T ss_dssp -CHHHHHHHHHHSSC
T ss_pred -CHHHHHHHHHHHhc
Confidence 99999999998764
No 5
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=9.8e-62 Score=462.76 Aligned_cols=310 Identities=43% Similarity=0.718 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ 87 (325)
.++++|.+++++|++++++++|++ .+++++.+.+|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|++
T Consensus 56 a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~ 135 (369)
T 1ik6_A 56 AINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIW 135 (369)
T ss_dssp HHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----
T ss_pred HHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHH
Confidence 445555558999999999999998 4455666889999998899999999999999999999999999999878999999
Q ss_pred HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCc
Q psy8699 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDP 167 (325)
Q Consensus 88 ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~P 167 (325)
|++|||++++|+++|+..+...++ ++++.+.+...+|++||++.|+++|+++|||+|++|+|++|++.++++|++.++|
T Consensus 136 ~a~Dqi~~~~a~~~~~~~g~~~~p-vv~~~~~gg~~g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~~~~P 214 (369)
T 1ik6_A 136 LGADELLNHIAKLRYRSGGNYKAP-LVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDP 214 (369)
T ss_dssp CCHHHHHHHHHHHHC------CCC-CEEEEEECC-----------HHHHHHTCTTCEEECCCSHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC-EEEEEeCCCCCCCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHHHHhCCCC
Confidence 999999999999988765544455 5555544443236678888889999999999999999999999999999999999
Q ss_pred EEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHH
Q psy8699 168 CIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET 247 (325)
Q Consensus 168 v~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~ 247 (325)
++||+||+++|...++++.+++.+++|+++++++|.|++||++|+++..|++|++.|+ | +++|||++|++|||++.
T Consensus 215 v~i~~p~~l~r~~~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~---G-~v~Vi~~~~l~P~d~~~ 290 (369)
T 1ik6_A 215 VVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK---A-SVEVVDLQTLNPLDFDT 290 (369)
T ss_dssp EEEEEEGGGSSCCCEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS---S-CEEEEECCEEETTCHHH
T ss_pred EEEEEehhhhccCCCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC---C-CeEEEeeeecCCCCHHH
Confidence 9999999999875455554556788999999999999999999999999999999996 8 99999999999999999
Q ss_pred HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCC-c--ccccccCCCCHHHHHHHHHHHhh
Q psy8699 248 VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPF-P--HIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 248 l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~-~--~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
|.++++++++++++||+...|||+++|++++.+.++..+..|+.++ |.++.| + .+++.+++ |+++|+++|+++++
T Consensus 291 i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~v-g~~d~~~~~~~l~~~~gl-~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 291 VLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRL-AGPDVPQSPIAADAAYAP-TVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEE-EECCCC-------------CHHHHHHHHHHHHT
T ss_pred HHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEE-cCCCcCCCCHHHHHHhCc-CHHHHHHHHHHHhh
Confidence 9999999999999999988999999999999987765566889999 554333 2 45667777 99999999999998
Q ss_pred C
Q psy8699 325 Y 325 (325)
Q Consensus 325 ~ 325 (325)
|
T Consensus 369 ~ 369 (369)
T 1ik6_A 369 Y 369 (369)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=3.1e-60 Score=448.41 Aligned_cols=311 Identities=31% Similarity=0.456 Sum_probs=265.6
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCC-CcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGF-GGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIF 87 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~-~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~~ 87 (325)
.++++|.+++++|++++++++|++. +++++.+.+|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|++
T Consensus 20 a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~f~~F~~ 99 (341)
T 2ozl_B 20 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSM 99 (341)
T ss_dssp HHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECSSGGGGG
T ss_pred HHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEeccHHHHH
Confidence 3445555589999999999999983 445666889999998899999999999999999999999999999878999999
Q ss_pred HHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD 166 (325)
Q Consensus 88 ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~ 166 (325)
|++|||++++++.+|+..+...++ ++++.++|..| +|+||+...| ++++++|||+|++|+|++|++.++++|++.++
T Consensus 100 ~a~dqi~~~~a~~~y~~~g~~~~p-vv~~~~~G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~ 177 (341)
T 2ozl_B 100 QAIDQVINSAAKTYYMSGGLQPVP-IVFRGPNGASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNN 177 (341)
T ss_dssp GGHHHHHTTTTTHHHHTTSSCCCC-CEEEEECSCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhccccCCCC-EEEEEcCcCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHHHHHhcCC
Confidence 999999999998777665544455 56665556666 5888842224 99999999999999999999999999999999
Q ss_pred cEEEeccccccccc--c-cCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCC
Q psy8699 167 PCIFFEPKVLYRAA--V-EDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPW 243 (325)
Q Consensus 167 Pv~i~~~~~l~~~~--~-~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~ 243 (325)
|++||+||.+++.. . +.++..++.+++||++++++|.|++||++|+++..|++|++.|+++ |++++||++++++||
T Consensus 178 Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~-Gi~v~vv~~~~l~P~ 256 (341)
T 2ozl_B 178 PVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKE-GVECEVINMRTIRPM 256 (341)
T ss_dssp CEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTT-TCCEEEEECCEEETC
T ss_pred CEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhc-CCCeEEEeeeeecCC
Confidence 99999999876532 2 2224445678899999999999999999999999999999999998 999999999999999
Q ss_pred CHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh-hccccCCCCeEEEcccCCCCc----ccccccCCCCHHHHHHH
Q psy8699 244 DRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD-KCFLSLEAPIRRVTGYDTPFP----HIFEPFYIPDKWRCLEA 318 (325)
Q Consensus 244 d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e-~~~~~~~~~v~~~~g~~~~~~----~~~~~~~l~~~~~I~~~ 318 (325)
|.+.++++++++++++++||+...|||+++|++++.+ .+++.++.|+.++ |.++.|. .+.+.+++ |+++|+++
T Consensus 257 d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~i-g~~d~~~~~g~~l~~~~g~-~~~~I~~~ 334 (341)
T 2ozl_B 257 DMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRV-TGADVPMPYAKILEDNSIP-QVKDIIFA 334 (341)
T ss_dssp CHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEE-CCCSSCCCSSHHHHHTTSC-CHHHHHHH
T ss_pred CHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEE-ecCCcCCCCcHHHHHHhCc-CHHHHHHH
Confidence 9999999999999999999998899999999999998 7665567899999 6655443 34566777 99999999
Q ss_pred HHHHhh
Q psy8699 319 VKQITR 324 (325)
Q Consensus 319 i~~~~~ 324 (325)
|+++++
T Consensus 335 i~~~l~ 340 (341)
T 2ozl_B 335 IKKTLN 340 (341)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
No 7
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.5e-53 Score=430.63 Aligned_cols=286 Identities=21% Similarity=0.305 Sum_probs=247.2
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCC-eEEEEecccccHH
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGA-TAIAEIQFADYIF 87 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~-~p~~~it~~~F~~ 87 (325)
.++++|.+++++|++++++++|++.+ + .+..|.++| |+||+|+||+|++|+++|+|+|++|+ +|+++ ||++|++
T Consensus 318 a~~~~L~~l~~~d~~vv~~~aD~~~~-~--~~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~-~f~~Fl~ 392 (616)
T 3mos_A 318 AYGQALAKLGHASDRIIALDGDTKNS-T--FSEIFKKEH-PDRFIECYIAEQNMVSIAVGCATRNRTVPFCS-TFAAFFT 392 (616)
T ss_dssp HHHHHHHHHHHHCTTEEEEESSCHHH-H--SHHHHHHHC-GGGEEECCSCHHHHHHHHHHHHGGGCCEEEEE-EEGGGGG
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcCCC-c--chhhHHHhC-CCCeEEcCccHHHHHHHHHHHHHcCCCCEEEE-ehHHHHH
Confidence 45556666999999999999999853 2 268999999 89999999999999999999999997 78999 8999999
Q ss_pred HHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCC
Q psy8699 88 PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDK 165 (325)
Q Consensus 88 ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~ 165 (325)
|++|||++. +.++++. . ++..+.|. +| +|+|||+++|+++|+++||++|++|+|++|++.+++++++.+
T Consensus 393 ~a~dqi~~~-a~~~~~v---~-----~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~~~ 463 (616)
T 3mos_A 393 RAFDQIRMA-AISESNI---N-----LCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAANTK 463 (616)
T ss_dssp GGHHHHHHH-HHTTCCE---E-----EEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH-HHhCCCe---E-----EEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhcC
Confidence 999999974 6565543 2 12334555 45 589999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccccccCCCCCCcccCCCceeEeeeCCc--EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCC
Q psy8699 166 DPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTD--VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPW 243 (325)
Q Consensus 166 ~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~d--v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~ 243 (325)
+|+++|++| ...+.++.....+++||++++++|.| ++||++|++++.|++|++.|+++ ||+++|||+++++||
T Consensus 464 gp~~ir~~r----~~~p~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L~~~-Gi~v~Vidlr~l~Pl 538 (616)
T 3mos_A 464 GICFIRTSR----PENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKE-KINIRVLDPFTIKPL 538 (616)
T ss_dssp SEEEEECCS----SCCBCCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHHHTT-TCEEEEEECSEEESC
T ss_pred CCEEEEEeC----CCCCccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHHHhc-CCCEEEEEeCccCCC
Confidence 999997664 44455544456778999999999866 99999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHhcc-CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHH
Q psy8699 244 DRETVFQSARKT-GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCL 316 (325)
Q Consensus 244 d~~~l~~~~~~~-~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~ 316 (325)
|++.|.++++++ ++|+||||+...||+|++|++.+.+.. +.|+.++ |.++ |+ ++++.+++ ++++|+
T Consensus 539 D~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~~-g~~~-f~~~g~~~~l~~~~gl-~~~~I~ 611 (616)
T 3mos_A 539 DRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTHL-AVNR-VPRSGKPAELLKMFGI-DRDAIA 611 (616)
T ss_dssp CHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEEE-EECS-CCCCSCHHHHHHHTTC-SHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEEE-eCCC-CCCCCCHHHHHHHHCc-CHHHHH
Confidence 999999999999 899999999999999999999998753 4688888 6663 54 35678888 999999
Q ss_pred HHHH
Q psy8699 317 EAVK 320 (325)
Q Consensus 317 ~~i~ 320 (325)
++|+
T Consensus 612 ~~i~ 615 (616)
T 3mos_A 612 QAVR 615 (616)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9986
No 8
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.9e-52 Score=421.79 Aligned_cols=290 Identities=16% Similarity=0.254 Sum_probs=248.9
Q ss_pred chHHHHHH----HHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEeccc
Q psy8699 8 TGFFQSSP----SQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~----~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~ 83 (325)
.++++++. +++++|++++++++|++.+ ++ +.+|.++| |+||+|+||+|++|+++|+|+|++|+|||++ +|+
T Consensus 319 ~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~--~~-~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~-~~~ 393 (621)
T 2o1s_A 319 PSYSKIFGDWLCETAAKDNKLMAITPAMREG--SG-MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVA-IYS 393 (621)
T ss_dssp CBHHHHHHHHHHHHHHHCTTEEEEESSCTTT--TT-CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEE-EET
T ss_pred HHHHHHHHHHHHHHHhhCcCEEEEeCcccCC--cC-hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEE-ehH
Confidence 45555555 4889999999999999753 22 68999999 9999999999999999999999999999999 699
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
+|++|++||+++++|++++|... +..+.|.+| +|+|||+.+|+++++++||++|++|+|++|+++++++|+
T Consensus 394 ~F~~~a~dqi~~~~a~~~~pvv~--------~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~ 465 (621)
T 2o1s_A 394 TFLQRAYDQVLHDVAIQKLPVLF--------AIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGY 465 (621)
T ss_dssp TGGGGGHHHHHHTTTTTTCCCEE--------EEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCEEE--------EEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHH
Confidence 99999999999999977665421 112335556 689999999999999999999999999999999999999
Q ss_pred hC-CCcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccccc
Q psy8699 163 KD-KDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSIL 241 (325)
Q Consensus 163 ~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~ 241 (325)
+. ++|++||++|..+.. .+.+.. +.+++||++++++|.|++||++|+++..|++| ++ |++++||+++|++
T Consensus 466 ~~~~~Pv~i~~~r~~~~~--~~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~-Gi~v~Vi~~~~~~ 536 (621)
T 2o1s_A 466 HYNDGPSAVRYPRGNAVG--VELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AE-SLNATLVDMRFVK 536 (621)
T ss_dssp HCCSSCEEEECCSSBCCC--CCCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HH-HHTCEEEECCEEE
T ss_pred HcCCCCEEEEeCCCCCCC--CCCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cC-CCCEEEEecCccC
Confidence 98 999999998754422 112222 56889999999999999999999999999999 45 9999999999999
Q ss_pred CCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHH
Q psy8699 242 PWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRC 315 (325)
Q Consensus 242 P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I 315 (325)
|||++.+.+++++++++++|||+...|||+++|++++.+++ ++.|+.++ |.++.|. ++++.+++ |+++|
T Consensus 537 P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~---~~~~v~~i-g~~d~f~~~g~~~~l~~~~g~-~~~~I 611 (621)
T 2o1s_A 537 PLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR---KPVPVLNI-GLPDFFIPQGTQEEMRAELGL-DAAGM 611 (621)
T ss_dssp SCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTT---CCCCEEEE-EECSSCCCCSCHHHHHHHTTC-SHHHH
T ss_pred CCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcC---CCCCeEEE-ecCCcCCCCCCHHHHHHHHCc-CHHHH
Confidence 99999999999999999999999999999999999998875 45789888 6654443 35678888 99999
Q ss_pred HHHHHHHhh
Q psy8699 316 LEAVKQITR 324 (325)
Q Consensus 316 ~~~i~~~~~ 324 (325)
+++|+++++
T Consensus 612 ~~~i~~~l~ 620 (621)
T 2o1s_A 612 EAKIKAWLA 620 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
No 9
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.2e-52 Score=422.74 Aligned_cols=291 Identities=16% Similarity=0.246 Sum_probs=250.4
Q ss_pred cchHHHHHH----HHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecc
Q psy8699 7 WTGFFQSSP----SQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQF 82 (325)
Q Consensus 7 ~~~~~~a~~----~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~ 82 (325)
+.++++++. +++++|++++++++|++.+ ++ +.+|.++| |+||+|+||+|++|+++|+|+|++|+|||++ +|
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~--~~-~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~-~~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREG--SG-LVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVA-IY 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTT--TT-CHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEE-EE
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCC--cC-hHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEE-ec
Confidence 345555555 5889999999999999753 22 78999999 9999999999999999999999999999999 79
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
++|++|++|||++++|++++|... +..+.|.+| +|+|||+.+|+++|+++||++|++|+|++|++.++++|
T Consensus 396 ~~F~~~a~dqi~~~~a~~~~pvv~--------~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a 467 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEHLNVTF--------CIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYA 467 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTTCCCEE--------EEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEE--------EEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHH
Confidence 999999999999999987765421 112345456 58999999999999999999999999999999999999
Q ss_pred HhCCCcEEEecccccccccccCCC-CCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy8699 162 IKDKDPCIFFEPKVLYRAAVEDVP-EDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSI 240 (325)
Q Consensus 162 ~~~~~Pv~i~~~~~l~~~~~~~~~-~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l 240 (325)
++.++|++||++|... +.++ .+.+.+++||++++++|.|++||++|+++..|++|++.|+ +++||+++|+
T Consensus 468 ~~~~~Pv~i~~~r~~~----~~~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~-----~~~Vi~~~~~ 538 (629)
T 2o1x_A 468 QTHDGPFAIRYPRGNT----AQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP-----GVGVVNARFV 538 (629)
T ss_dssp HHSSSCEEEECCSSBC----CCCCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT-----TEEEEECCEE
T ss_pred HhCCCCEEEEecCCCC----CCCcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc-----CCEEEeeCCC
Confidence 9999999999887543 2222 2345688999999999999999999999999999999885 8999999999
Q ss_pred cCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHH
Q psy8699 241 LPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWR 314 (325)
Q Consensus 241 ~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~ 314 (325)
+|||++.+.+++++++++++|||+...||+|++|++++.+++ ++.|+.++ |.++.|. ++++.+++ |+++
T Consensus 539 ~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~---~~~~v~~i-g~~d~f~~~g~~~~l~~~~gl-~~~~ 613 (629)
T 2o1x_A 539 KPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN---LHPTVRVL-GIPDEFQEHATAESVHARAGI-DAPA 613 (629)
T ss_dssp ESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTT---CCCEEEEE-EECSSCCCSCCHHHHHHHHTC-SHHH
T ss_pred CCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhC---CCCCeEEE-eeCCcCCCCCCHHHHHHHHCc-CHHH
Confidence 999999999999999999999999999999999999998874 35789888 6655443 35678888 9999
Q ss_pred HHHHHHHHhh
Q psy8699 315 CLEAVKQITR 324 (325)
Q Consensus 315 I~~~i~~~~~ 324 (325)
|+++|+++.+
T Consensus 614 I~~~i~~~~~ 623 (629)
T 2o1x_A 614 IRTVLAELGV 623 (629)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 10
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.9e-48 Score=396.01 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=222.4
Q ss_pred HHHHHHHHHhcCCCEEEEcCcCCC--CcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccH
Q psy8699 10 FFQSSPSQLLSSQGGVLFGEDVGF--GGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYI 86 (325)
Q Consensus 10 ~~~a~~~~~~~~~~vv~~~~D~~~--~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~ 86 (325)
++++|.++++++|+++++++|++. ++.++.+.+|.++|+|+||||+||+||+|+++|+|||++ |+|||++ ||+.|+
T Consensus 385 ~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs 463 (690)
T 3m49_A 385 SGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFS 463 (690)
T ss_dssp HHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGG
T ss_pred HHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHH
Confidence 444555589999999999999973 222344678888877999999999999999999999999 8999999 788887
Q ss_pred HHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC
Q psy8699 87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD 164 (325)
Q Consensus 87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~ 164 (325)
..+..||| ++|++++|+..+. ++.|. +| +|+|||+++|+++||++||++|++|+|++|++.++++|++.
T Consensus 464 ~f~~~air-~~al~~lpVv~v~--------~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~ 534 (690)
T 3m49_A 464 DYLRPAIR-LAALMQLPVTYVF--------THDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALES 534 (690)
T ss_dssp GGGHHHHH-HHHHHTCCCEEEE--------ECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHhcCCCcEEEE--------ECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHHc
Confidence 65566776 5887776553211 22333 45 69999999999999999999999999999999999999997
Q ss_pred -CCcEEEecccccccccccCCCCCC----cccCCCceeEeeeCC----cEEEEEechhHHHHHHHHHHHHhhcCCcEEEE
Q psy8699 165 -KDPCIFFEPKVLYRAAVEDVPEDY----YELPLDKADILVAGT----DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVI 235 (325)
Q Consensus 165 -~~Pv~i~~~~~l~~~~~~~~~~~~----~~~~~gk~~~~~~g~----dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi 235 (325)
++|++||++| +..+.++.++ +.+++|+ +++++|. |++||++|++++.|++|++.|+++ ||+++||
T Consensus 535 ~~~Pv~ir~~R----~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~-GI~~~Vi 608 (690)
T 3m49_A 535 TNKPTALVLTR----QDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVD-GVDASVV 608 (690)
T ss_dssp SSSCEEEECCS----SEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCCEEEEeec----ccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhc-CCCeEEE
Confidence 7999998775 3333332221 4567887 6888875 999999999999999999999999 9999999
Q ss_pred ecccccCCCH--HHHHHHHh--ccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC-----CCCcccccc
Q psy8699 236 DLVSILPWDR--ETVFQSAR--KTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD-----TPFPHIFEP 306 (325)
Q Consensus 236 ~~~~l~P~d~--~~l~~~~~--~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~-----~~~~~~~~~ 306 (325)
|++|++|||. +.+++++. +++++|++|++...| |. +++.+.+ ..+ |.+ ++..+++++
T Consensus 609 d~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G-~~----~~~~~~~--------~~i-gid~Fg~sg~~~~l~~~ 674 (690)
T 3m49_A 609 SMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFG-WH----RYVGLEG--------DVL-GIDTFGASAPGEKIMEE 674 (690)
T ss_dssp ECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTT-TH----HHHTTTC--------EEE-CCCSCCCSSCHHHHHHH
T ss_pred ecccCCcCccccHHHHHHHhhccCCeEEEEECCchhh-HH----HHhccCC--------CEE-ccCcCcCcCCHHHHHHH
Confidence 9999999986 45555554 467899999997655 43 3443321 123 442 233367889
Q ss_pred cCCCCHHHHHHHHHHHh
Q psy8699 307 FYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 307 ~~l~~~~~I~~~i~~~~ 323 (325)
+|| |+++|+++|++++
T Consensus 675 ~Gl-t~e~I~~~i~~~l 690 (690)
T 3m49_A 675 YGF-TVENVVRKVKEML 690 (690)
T ss_dssp TTC-SHHHHHHHHHHHC
T ss_pred HCc-CHHHHHHHHHHhC
Confidence 999 9999999999874
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-48 Score=394.96 Aligned_cols=285 Identities=10% Similarity=0.053 Sum_probs=227.3
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCC-cc-cccchhHHHHh-----CC----CceeechhhHHHHHHHHHHHhcc-CCeE
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFG-GV-FRCSLGLQEKY-----GK----HRVFNTPLSEQGIVGFGIGLAVS-GATA 76 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~-g~-~~~~~~~~~~~-----~p----~r~~~~gIaE~~~v~~a~GlA~~-G~~p 76 (325)
.+.++|.++++++|+++++++|++.+ ++ ++.+..|.++| +| +||||+||+||+|+++|+|||++ |+||
T Consensus 380 a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~P 459 (700)
T 3rim_A 380 ASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRA 459 (700)
T ss_dssp HHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHHHcCCCEE
Confidence 44555556899999999999999732 11 12357888888 35 69999999999999999999999 9999
Q ss_pred EEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHH
Q psy8699 77 IAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKA 154 (325)
Q Consensus 77 ~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~ 154 (325)
|++ ||+.|+.++.+||| +++++++|+..+. ++.|. +| +|+|||+++|+++||++||++|++|+|++|+
T Consensus 460 v~~-tF~~F~d~~~~~ir-~~al~~lpvv~v~--------thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~ 529 (700)
T 3rim_A 460 YGG-TFLQFSDYMRPAVR-LAALMDIDTIYVW--------THDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANET 529 (700)
T ss_dssp EEE-EEGGGGGGGHHHHH-HHHHHTCCCEEEE--------ECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred EEE-ecHHHHHHHHHHHH-HhcCCCCCEEEEE--------eCCCcccCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHH
Confidence 999 99999999999987 5887776653221 22232 45 6999999999999999999999999999999
Q ss_pred HHHHHHhHhCC---CcEEEecccccccccccCCCCC-CcccCCCceeEeeeCC--------cEEEEEechhHHHHHHHHH
Q psy8699 155 KGLLLSCIKDK---DPCIFFEPKVLYRAAVEDVPED-YYELPLDKADILVAGT--------DVTLIGWGTQVHVLREVAG 222 (325)
Q Consensus 155 ~~~~~~a~~~~---~Pv~i~~~~~l~~~~~~~~~~~-~~~~~~gk~~~~~~g~--------dv~ii~~G~~~~~a~~A~~ 222 (325)
+.++++|++.+ +|++||++| +..+.++.+ .+.+++|+ +++++|. |++||++|++++.|++|++
T Consensus 530 ~~~l~~Ai~~~~~~~Pv~ir~~r----~~~~~~~~~~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v~~al~Aa~ 604 (700)
T 3rim_A 530 AYAWRTILARRNGSGPVGLILTR----QGVPVLDGTDAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQT 604 (700)
T ss_dssp HHHHHHHHTTTTCSSCEEEECCS----SEECCCTTCCHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCEEEEecc----ccCCCcCcccccccCCCc-EEEecCCccccCCCCCEEEEEechHHHHHHHHHH
Confidence 99999999975 699997765 444445443 35678887 7889886 9999999999999999999
Q ss_pred HHHhhcCCcEEEEecccccCCCHH--HHHHHHhc--cCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC-
Q psy8699 223 LAKEQLGVSCEVIDLVSILPWDRE--TVFQSARK--TGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD- 297 (325)
Q Consensus 223 ~L~~~~gi~~~vi~~~~l~P~d~~--~l~~~~~~--~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~- 297 (325)
.|+++ ||+++|||++|++|||.+ .+++.+.+ ++++|+||++...| | .+++.+.+ .++ |.+
T Consensus 605 ~L~~~-Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G-~----~~~~~~~~--------~~i-gid~ 669 (700)
T 3rim_A 605 LLADN-DILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQC-W----HQLVGDTG--------EIV-SIEH 669 (700)
T ss_dssp HHHTT-TCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGG-G----HHHHCTTC--------EEE-CCCS
T ss_pred HHHhc-CCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchh-H----HHHHhcCC--------cEE-ccCc
Confidence 99998 999999999999999995 45555543 67899999997655 4 24443321 233 552
Q ss_pred ----CCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 298 ----TPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 298 ----~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
++..++++++|| |+++|+++|+++++
T Consensus 670 Fg~sg~~~~l~~~~Gl-t~e~I~~~i~~~l~ 699 (700)
T 3rim_A 670 YGESADHKTLFREYGF-TAEAVAAAAERALD 699 (700)
T ss_dssp CCCSSCHHHHHHHTTC-SHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHhCc-CHHHHHHHHHHHhh
Confidence 222367899999 99999999999875
No 12
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=5.5e-48 Score=389.57 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=219.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccccHHH
Q psy8699 10 FFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADYIFP 88 (325)
Q Consensus 10 ~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~~r 88 (325)
+.++|.++++.+|+++++++|++.++. ..-.+.++|+|+||||+||+||+|+++|+|||++ |+|||++ +|++|++|
T Consensus 344 ~~~~l~~l~~~~p~~v~~~aDl~~s~~--~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-~f~~F~~~ 420 (632)
T 3l84_A 344 NGEILNVLAKNLEGFLGGSADLGPSNK--TELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSA-TFFIFSEY 420 (632)
T ss_dssp HHHHHHHHHHHCTTEEEEESSCHHHHT--CCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHH
T ss_pred HHHHHHHHHhhCCCEEEEecccCCccC--cchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHH
Confidence 445677799999999999999973221 1112335787899999999999999999999999 9999999 79999999
Q ss_pred HHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699 89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD 166 (325)
Q Consensus 89 a~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~ 166 (325)
++|||+ +++++++|+..+ .++.|. +| +|+|||+++|+++||++||++|++|+|++|++.++++|++.++
T Consensus 421 ~~~~ir-~~a~~~~pv~~~--------~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~~~~ 491 (632)
T 3l84_A 421 LKPAAR-IAALMKIKHFFI--------FTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADI 491 (632)
T ss_dssp HHHHHH-HHHHHTCCCEEE--------EECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHHCSS
T ss_pred HHHHHH-HHhccCCCEEEE--------EECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCC
Confidence 999997 588776654211 122232 45 6999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccccccCCCCC-CcccCCCce-eEeee--CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccC
Q psy8699 167 PCIFFEPKVLYRAAVEDVPED-YYELPLDKA-DILVA--GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILP 242 (325)
Q Consensus 167 Pv~i~~~~~l~~~~~~~~~~~-~~~~~~gk~-~~~~~--g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P 242 (325)
|++||++|. .. ++.+ .+..+++++ +++++ |.|++||++|++++.|++|++.|+++ ||+++|||++|++|
T Consensus 492 Pv~ir~~r~----~~--~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~-Gi~~~Vi~~~~i~P 564 (632)
T 3l84_A 492 PSAFVLSRQ----KL--KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ-GFACNVVSMPCFEL 564 (632)
T ss_dssp CEEEECCSS----CB--CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHT-TCCEEEEECSBHHH
T ss_pred CEEEEEcCC----CC--CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhc-CCCeEEEecCcCCC
Confidence 999988753 22 2222 133456665 88888 89999999999999999999999999 99999999999999
Q ss_pred CCHHH--HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHH
Q psy8699 243 WDRET--VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWR 314 (325)
Q Consensus 243 ~d~~~--l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~ 314 (325)
||++. +++++.+ ++||++|++.. .||++. . + .++ |. +.|. ++++++|| |+++
T Consensus 565 lD~~~~~~~~sv~~-~~vv~vE~~~~-~g~~~~------------~--~-~~i-Gi-d~Fg~sg~~~~l~~~~Gl-t~~~ 624 (632)
T 3l84_A 565 FEKQDKAYQERLLK-GEVIGVEAAHS-NELYKF------------C--H-KVY-GI-ESFGESGKDKDVFERFGF-SVSK 624 (632)
T ss_dssp HHTSCHHHHHHHCC-SEEEEECSSCC-GGGGGT------------C--S-EEE-CC-CSCCCSSCHHHHHHHTTC-SHHH
T ss_pred cchhHHHHHHHhcC-CCEEEEeCChh-hhHHHH------------h--C-eEE-Ec-CCCcccCCHHHHHHHhCc-CHHH
Confidence 99874 6677766 78999999954 566421 1 1 344 56 3454 57899999 9999
Q ss_pred HHHHHHH
Q psy8699 315 CLEAVKQ 321 (325)
Q Consensus 315 I~~~i~~ 321 (325)
|+++|++
T Consensus 625 I~~~i~~ 631 (632)
T 3l84_A 625 LVNFILS 631 (632)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999863
No 13
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=5.1e-48 Score=393.64 Aligned_cols=283 Identities=15% Similarity=0.115 Sum_probs=226.8
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCC-cc-cccchhHHHH---hCC---CceeechhhHHHHHHHHHHHhcc-CCeEEEE
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFG-GV-FRCSLGLQEK---YGK---HRVFNTPLSEQGIVGFGIGLAVS-GATAIAE 79 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~-g~-~~~~~~~~~~---~~p---~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~ 79 (325)
.+.++|.++++.+|+++++++|++.+ ++ .+.+..|.++ | | +||||+||+|++|+++|+|||++ |++||++
T Consensus 400 A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~ 478 (711)
T 3uk1_A 400 ASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVLHGGYKPFGG 478 (711)
T ss_dssp HHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHHHSSCEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHHcCCCEEEEE
Confidence 34455556899999999999999732 11 1235678888 9 8 99999999999999999999995 9999999
Q ss_pred ecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHH
Q psy8699 80 IQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGL 157 (325)
Q Consensus 80 it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~ 157 (325)
+|++|++|+++||+. ++++++|+.. +.++.|. +| +|+|||+++|+++||++||++|++|+|++|++.+
T Consensus 479 -~f~~F~~~~~~~ir~-~a~~~lpv~~--------v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~~~ 548 (711)
T 3uk1_A 479 -TFLTFSDYSRNALRV-AALMKVPSIF--------VFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVA 548 (711)
T ss_dssp -EEGGGHHHHHHHHHH-HHHHTCCCEE--------EEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHH
T ss_pred -EhHHHHHHHHHHHHH-hhhcCCCEEE--------EEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHHHH
Confidence 799999999999984 7876665421 1122232 45 6999999999999999999999999999999999
Q ss_pred HHHhHhCCCcEEEecccccccccccCCCCCC---cccCCCceeEeee--C----CcEEEEEechhHHHHHHHHHHHHhhc
Q psy8699 158 LLSCIKDKDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILVA--G----TDVTLIGWGTQVHVLREVAGLAKEQL 228 (325)
Q Consensus 158 ~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~~--g----~dv~ii~~G~~~~~a~~A~~~L~~~~ 228 (325)
+++|++.++|+|||++| +..+.++..+ +.+++|++ ++++ | .|++||++|++++.|++|++.|+++
T Consensus 549 l~~Ai~~~~Pv~ir~~r----~~~p~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~~- 622 (711)
T 3uk1_A 549 WTYAVAHQHPSCLIFSR----QNLAFNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQ- 622 (711)
T ss_dssp HHHHHHSSSCEEEECCS----SEECCCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCCCEEEEeeC----CCCCCCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHHc-
Confidence 99999999999997765 4444444332 45677874 6764 7 7999999999999999999999999
Q ss_pred CCcEEEEecccccCCCHHH--HHHHHhccC-cEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc----
Q psy8699 229 GVSCEVIDLVSILPWDRET--VFQSARKTG-RVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP---- 301 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~--l~~~~~~~~-~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~---- 301 (325)
||+++|||++|++|||.+. +++++.++. .+|++|++. .+||++.+ . .+..++ |.+ .|.
T Consensus 623 GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~-~~g~~~~~----g--------~~~~~i-Gid-~Fg~sg~ 687 (711)
T 3uk1_A 623 GIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGV-TDFWRKYV----G--------LEGGVV-GID-TFGESAP 687 (711)
T ss_dssp TEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSC-SGGGHHHH----T--------TTSEEE-CCC-SCCCSSC
T ss_pred CCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCc-cccHHHHh----C--------CCceEE-EeC-CCcCcCC
Confidence 9999999999999999875 667777776 589999985 56776543 1 122334 553 343
Q ss_pred --ccccccCCCCHHHHHHHHHHHhh
Q psy8699 302 --HIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 302 --~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
++++++|| |+++|++++++++.
T Consensus 688 ~~~L~~~~Gl-t~e~Iv~~~~~~l~ 711 (711)
T 3uk1_A 688 AGVLFKHFGF-TVEHVIETAKAVLA 711 (711)
T ss_dssp HHHHHHHTTC-SHHHHHHHHHHHHC
T ss_pred HHHHHHHHCc-CHHHHHHHHHHHhC
Confidence 67899999 99999999999863
No 14
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.1e-47 Score=391.89 Aligned_cols=291 Identities=15% Similarity=0.143 Sum_probs=230.0
Q ss_pred CccchHHHHHH----HHHhcCCCEEEEcCcCCCCc-cc-ccchhHHH------HhCCCceeechhhHHHHHHHHHHHhcc
Q psy8699 5 GYWTGFFQSSP----SQLLSSQGGVLFGEDVGFGG-VF-RCSLGLQE------KYGKHRVFNTPLSEQGIVGFGIGLAVS 72 (325)
Q Consensus 5 ~~~~~~~~a~~----~~~~~~~~vv~~~~D~~~~g-~~-~~~~~~~~------~~~p~r~~~~gIaE~~~v~~a~GlA~~ 72 (325)
++++++++|+. ++++.+|+++++++|++.++ ++ +.+..|.+ +| |+||||+||+|++|+++|+|+|++
T Consensus 353 ~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~a~GlA~~ 431 (680)
T 1gpu_A 353 DSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGAIMNGISAF 431 (680)
T ss_dssp SCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCC-CCceecCCccHHHHHHHHHHHHhc
Confidence 44555555554 58899999999999997322 11 11346777 99 999999999999999999999999
Q ss_pred C-Ce-EEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEee
Q psy8699 73 G-AT-AIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIP 148 (325)
Q Consensus 73 G-~~-p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P 148 (325)
| +| ||++ +|++|+.++++|||. ++++++|... +.++.|. .| +|+|||+++|+++|+++||++|++|
T Consensus 432 Gg~~~P~~~-~f~~F~~~~~~air~-~a~~~lpvv~--------v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~P 501 (680)
T 1gpu_A 432 GANYKPYGG-TFLNFVSYAAGAVRL-SALSGHPVIW--------VATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRP 501 (680)
T ss_dssp CTTCEEEEE-EEHHHHGGGHHHHHH-HHHHTCCCEE--------EEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECC
T ss_pred CCCceEEEe-ehHHHHHHHHHHHHH-HHhcCCCEEE--------EEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEec
Confidence 8 99 9999 899999999999985 8876665421 1122332 45 6999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHhC-CCcEEEecccccccccccCCCCCCcc-cCCCceeEeeeC--CcEEEEEechhHHHHHHHHHHH
Q psy8699 149 RGPYKAKGLLLSCIKD-KDPCIFFEPKVLYRAAVEDVPEDYYE-LPLDKADILVAG--TDVTLIGWGTQVHVLREVAGLA 224 (325)
Q Consensus 149 ~~~~e~~~~~~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~gk~~~~~~g--~dv~ii~~G~~~~~a~~A~~~L 224 (325)
+|++|++.++++|++. ++|++||++| ...+.++.+++. +++| ++++++| .|++||++|++++.|++|++.|
T Consensus 502 ad~~e~~~~l~~A~~~~~~Pv~i~~~r----~~~~~~~~~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L 576 (680)
T 1gpu_A 502 ADGNEVSAAYKNSLESKHTPSIIALSR----QNLPQLEGSSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTL 576 (680)
T ss_dssp CSHHHHHHHHHHHHHCSSCCEEEECCS----SCBCCCTTCCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEecC----CCCCCCCCcchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHH
Confidence 9999999999999997 9999997775 344445443344 6788 4788887 8999999999999999999999
Q ss_pred HhhcCCcEEEEecccccCCCHHH--HHHHHhccC-cEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc
Q psy8699 225 KEQLGVSCEVIDLVSILPWDRET--VFQSARKTG-RVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP 301 (325)
Q Consensus 225 ~~~~gi~~~vi~~~~l~P~d~~~--l~~~~~~~~-~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~ 301 (325)
+++ ||+++|||++|++|||.+. +++++.+++ ++|++|++.. +||++.+. +...+..+ +.+.++.
T Consensus 577 ~~~-Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v~----------~~~gv~~f-~~~g~~~ 643 (680)
T 1gpu_A 577 AAK-NIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYAH----------QSFGIDRF-GASGKAP 643 (680)
T ss_dssp HTT-TCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTCS----------EEECCCSC-CCCSCHH
T ss_pred Hhc-CCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhcC----------cceeeCcC-CCCCCHH
Confidence 999 9999999999999999885 556666654 5699999965 78876431 00011112 3444455
Q ss_pred ccccccCCCCHHHHHHHHHHHhhC
Q psy8699 302 HIFEPFYIPDKWRCLEAVKQITRY 325 (325)
Q Consensus 302 ~~~~~~~l~~~~~I~~~i~~~~~~ 325 (325)
++++.+++ |+++|+++|+++++|
T Consensus 644 ~l~~~~gl-~~~~I~~~i~~~l~~ 666 (680)
T 1gpu_A 644 EVFKFFGF-TPEGVAERAQKTIAF 666 (680)
T ss_dssp HHHHHTTC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHCc-CHHHHHHHHHHHHHh
Confidence 67888999 999999999998864
No 15
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.1e-47 Score=389.66 Aligned_cols=284 Identities=12% Similarity=0.081 Sum_probs=222.0
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCc--ccccchhHH-HHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGG--VFRCSLGLQ-EKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g--~~~~~~~~~-~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.++++|.++++.+|+++++++|++.++ .++.+.+|. ++| |+||+|+||+|++|+++|+|+|++ |+|||++ +|++
T Consensus 360 a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~ 437 (663)
T 3kom_A 360 ASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLV 437 (663)
T ss_dssp HHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGG
T ss_pred HHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHH
Confidence 344445558999999999999997432 234456785 999 899999999999999999999999 9999999 7999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
|+.++++||+ +++++++|... +.++.|. .| +|+|||+++|+++||++||++|++|+|++|++.++++|+
T Consensus 438 F~~~~~~~ir-~~a~~~lpvv~--------~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~~A~ 508 (663)
T 3kom_A 438 FSDYSRNAIR-MSALMKQPVVH--------VMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWKEAV 508 (663)
T ss_dssp GHHHHHHHHH-HHHHTTCCCEE--------EEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcCCCEEE--------EEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Confidence 9999999997 58876665421 1122222 45 699999999999999999999999999999999999999
Q ss_pred h-CCCcEEEecccccccccccCCCCCC---cccCCCceeEeee--CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEe
Q psy8699 163 K-DKDPCIFFEPKVLYRAAVEDVPEDY---YELPLDKADILVA--GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 163 ~-~~~Pv~i~~~~~l~~~~~~~~~~~~---~~~~~gk~~~~~~--g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~ 236 (325)
+ .++|++||++| +..+.++..+ ..++.|+ +++++ |.|++||++|++++.|++|++.|+++ ||+++|||
T Consensus 509 ~~~~~Pv~ir~~r----~~~p~~~~~~~~~~~~~~G~-~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~-Gi~~~Vi~ 582 (663)
T 3kom_A 509 KSKDTPSVMVLTR----QNLMPVVQTQHQVANIARGG-YLVKDNPDAKLTIVATGSEVELAVKVANEFEKK-GIKLNVAS 582 (663)
T ss_dssp HCSSCCEEEECCS----SEECCCCCCHHHHHHHTTTC-EEEECCTTCSCEEEECTTHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred HhCCCCEEEEccC----ccCCCcCccccchhcccCce-EEEEecCCCCEEEEEecHHHHHHHHHHHHHHhc-CCCeEEEE
Confidence 9 79999997764 4444444332 2466774 67777 78999999999999999999999999 99999999
Q ss_pred cccccCCCHHH--HHHHHhcc-CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC-----CCCcccccccC
Q psy8699 237 LVSILPWDRET--VFQSARKT-GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD-----TPFPHIFEPFY 308 (325)
Q Consensus 237 ~~~l~P~d~~~--l~~~~~~~-~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~-----~~~~~~~~~~~ 308 (325)
++|++|||.+. +++++.++ ..++++|++. ..||.+.+ . ++ .-..+ |.+ ++..++++++|
T Consensus 583 ~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~-~~g~~~~~----g-----G~--~~~~i-gid~Fg~sg~~~~l~~~~G 649 (663)
T 3kom_A 583 IPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQ-PDMWYKYM----P-----KA--GGEVK-GIYSFGESAPAEDLFKRFG 649 (663)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTSCEEEECSSC-CGGGGGGC----C-----TT--CEEEE-CCCSCCCSSCHHHHHHHHT
T ss_pred cCcCCcccccHHHHHHHhcCCCCeEEEEecCC-cccHHHHh----c-----cc--CCcEE-EecCCcCCCCHHHHHHHHC
Confidence 99999999976 55655544 4689999874 45665422 0 01 12233 553 33336789999
Q ss_pred CCCHHHHHHHHHHHh
Q psy8699 309 IPDKWRCLEAVKQIT 323 (325)
Q Consensus 309 l~~~~~I~~~i~~~~ 323 (325)
+ |+++|++++++++
T Consensus 650 l-t~e~I~~~~~~~~ 663 (663)
T 3kom_A 650 F-TVENISNIVAKYV 663 (663)
T ss_dssp C-SHHHHHHHHTTTC
T ss_pred c-CHHHHHHHHHhhC
Confidence 9 9999999998753
No 16
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=3.1e-47 Score=388.13 Aligned_cols=288 Identities=13% Similarity=0.088 Sum_probs=228.4
Q ss_pred CccchHHHH----HHHHHhcCCCEEEEcCcCCCC-ccc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEE
Q psy8699 5 GYWTGFFQS----SPSQLLSSQGGVLFGEDVGFG-GVF-RCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAI 77 (325)
Q Consensus 5 ~~~~~~~~a----~~~~~~~~~~vv~~~~D~~~~-g~~-~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~ 77 (325)
++++++++| |.++++.+|+++++++|++.+ +++ +.+..|.++| |+||+|+||+|++|+++|+|+|++ |++||
T Consensus 352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~ 430 (669)
T 2r8o_A 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY 430 (669)
T ss_dssp CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEE
Confidence 344555555 555889999999999999732 222 2356899999 999999999999999999999999 89999
Q ss_pred EEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHH
Q psy8699 78 AEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAK 155 (325)
Q Consensus 78 ~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~ 155 (325)
++ ||++|+.++++||++ ++++++|... +.++.|. .| +|+|||+++|++++|++||++|++|+|++|++
T Consensus 431 ~~-tf~~F~~~~~~~ir~-~a~~~lpvv~--------~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~ 500 (669)
T 2r8o_A 431 TS-TFLMFVEYARNAVRM-AALMKQRQVM--------VYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESA 500 (669)
T ss_dssp EE-EEGGGGGTTHHHHHH-HHHTTCCCEE--------EEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred Ee-ehHHHHHHHHHHHHH-HHhcCCCEEE--------EEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence 99 899999999999986 7876665421 1112232 45 69999999999999999999999999999999
Q ss_pred HHHHHhHhC-CCcEEEecccccccccccCCCCCCc---ccCCCceeEeee--C-CcEEEEEechhHHHHHHHHHHHHhhc
Q psy8699 156 GLLLSCIKD-KDPCIFFEPKVLYRAAVEDVPEDYY---ELPLDKADILVA--G-TDVTLIGWGTQVHVLREVAGLAKEQL 228 (325)
Q Consensus 156 ~~~~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~---~~~~gk~~~~~~--g-~dv~ii~~G~~~~~a~~A~~~L~~~~ 228 (325)
.++++|++. ++|++||++|.. .+.++.+++ .+++|+ +++++ | .|++||++|+++..|++|++.|+++
T Consensus 501 ~~l~~a~~~~~~Pv~i~~~r~~----~~~~~~~~~~~~~~~~G~-~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~- 574 (669)
T 2r8o_A 501 VAWKYGVERQDGPTALILSRQN----LAQQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAE- 574 (669)
T ss_dssp HHHHHHHHCSSSCEEEECCSSE----ECCCCCCHHHHHHGGGSC-EEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCcEEEEeCCCC----CCCCCCccchhhhccCCC-EEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhc-
Confidence 999999997 999999887643 334443322 266774 77887 7 8999999999999999999999999
Q ss_pred CCcEEEEecccccCCCHHH---HHHHHhcc-CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccC-----CC
Q psy8699 229 GVSCEVIDLVSILPWDRET---VFQSARKT-GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD-----TP 299 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~---l~~~~~~~-~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~-----~~ 299 (325)
||+++|||++|++|||.+. +.+.++.. +++|++|++.. +||++ ++.+.+ .++ |.+ ++
T Consensus 575 Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~----~~~~~~--------~~i-g~d~fg~sg~ 640 (669)
T 2r8o_A 575 GVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYK----YVGLNG--------AIV-GMTTFGESAP 640 (669)
T ss_dssp TCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHH----HHTTSS--------EEE-EECSCCCSSC
T ss_pred CCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHH----HhcCCC--------eEE-EcCCCCCcCC
Confidence 9999999999999999874 44444442 68999999965 78875 343321 123 443 22
Q ss_pred CcccccccCCCCHHHHHHHHHHHhh
Q psy8699 300 FPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 300 ~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
..++++++|| |+++|+++|+++++
T Consensus 641 ~~~l~~~~Gl-~~~~I~~~~~~~~~ 664 (669)
T 2r8o_A 641 AELLFEEFGF-TVDNVVAKAKELLH 664 (669)
T ss_dssp HHHHHHHTTC-SHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 3367899999 99999999999875
No 17
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.8e-46 Score=380.28 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=227.4
Q ss_pred CccchHHHHHH----HHHhcCCCEEEEcCcCCCCc-c-cccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccC--Ce
Q psy8699 5 GYWTGFFQSSP----SQLLSSQGGVLFGEDVGFGG-V-FRCSLGLQE-KYGKHRVFNTPLSEQGIVGFGIGLAVSG--AT 75 (325)
Q Consensus 5 ~~~~~~~~a~~----~~~~~~~~vv~~~~D~~~~g-~-~~~~~~~~~-~~~p~r~~~~gIaE~~~v~~a~GlA~~G--~~ 75 (325)
++++++++|+. ++++.+|+++++++|++.++ + .+.+..|.+ +| |+||||+||+|++|+++|+|+|++| +|
T Consensus 363 ~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~~G~~~~ 441 (675)
T 1itz_A 363 SPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIALHSPGFV 441 (675)
T ss_dssp SCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHTTCTTCE
T ss_pred CcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHHhcCCCCE
Confidence 44555555555 48899999999999997322 1 111235886 99 9999999999999999999999999 99
Q ss_pred EEEEecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHH
Q psy8699 76 AIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 76 p~~~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e 153 (325)
||++ +|++|+.++++||++ ++++++|... +.++.|. .| +|+|||+++|+++++++||++|++|+|++|
T Consensus 442 P~~~-t~~~F~~~~~~~ir~-~a~~~lpvv~--------~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e 511 (675)
T 1itz_A 442 PYCA-TFFVFTDYMRGAMRI-SALSEAGVIY--------VMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNE 511 (675)
T ss_dssp EEEE-EEGGGHHHHHHHHHH-HHHHTCCCEE--------EEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCSHHH
T ss_pred EEEE-EHHHHHHHHHHHHHH-HHhcCCCEEE--------EEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECCCHHH
Confidence 9999 799999999999975 8877665421 1122232 45 699999999999999999999999999999
Q ss_pred HHHHHHHhHhC-CCcEEEecccccccccccCCCCCCc-ccCCCceeEeee---C--CcEEEEEechhHHHHHHHHHHHHh
Q psy8699 154 AKGLLLSCIKD-KDPCIFFEPKVLYRAAVEDVPEDYY-ELPLDKADILVA---G--TDVTLIGWGTQVHVLREVAGLAKE 226 (325)
Q Consensus 154 ~~~~~~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~gk~~~~~~---g--~dv~ii~~G~~~~~a~~A~~~L~~ 226 (325)
++.++++|++. ++|++||++| ...+.++.+.+ .+++| ++++++ | .|++||++|+++..|++|++.|++
T Consensus 512 ~~~~l~~a~~~~~~Pv~i~~~r----~~~p~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~~L~~ 586 (675)
T 1itz_A 512 TAGAYKVAVLNRKRPSILALSR----QKLPHLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRK 586 (675)
T ss_dssp HHHHHHHHHHCTTSCEEEEECS----SCBCCCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEecC----CCCCCCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHHHHHh
Confidence 99999999997 9999997775 34454544434 47888 678887 7 899999999999999999999999
Q ss_pred hcCCcEEEEecccccCCCHHH--HHHHHhcc--CcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc-
Q psy8699 227 QLGVSCEVIDLVSILPWDRET--VFQSARKT--GRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP- 301 (325)
Q Consensus 227 ~~gi~~~vi~~~~l~P~d~~~--l~~~~~~~--~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~- 301 (325)
+ ||+++|||++|++|||.+. +++.+.++ +++|++|++.. +||++. +. .+..++ |.+ .|+
T Consensus 587 ~-Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~----~~--------~~~~~i-g~d-~fg~ 650 (675)
T 1itz_A 587 E-GKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKY----VG--------AQGKAI-GID-KFGA 650 (675)
T ss_dssp T-TCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHH----HC--------SSCEEE-CCC-SCCC
T ss_pred c-CCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHh----cC--------CCceEE-EeC-CCCC
Confidence 9 9999999999999999875 45555554 68999999976 788863 21 244556 554 343
Q ss_pred -----ccccccCCCCHHHHHHHHHH
Q psy8699 302 -----HIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 302 -----~~~~~~~l~~~~~I~~~i~~ 321 (325)
++++.+++ |+++|+++|++
T Consensus 651 sg~~~~l~~~~gl-~~~~I~~~i~~ 674 (675)
T 1itz_A 651 SAPAGTIYKEYGI-TVESIIAAAKS 674 (675)
T ss_dssp SSCHHHHHHHHTC-SHHHHHHHHTT
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHh
Confidence 56788899 99999999875
No 18
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-46 Score=378.42 Aligned_cols=280 Identities=15% Similarity=0.111 Sum_probs=222.9
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCc-cc-ccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccC-CeEEEEecccc
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGG-VF-RCSLGLQE-KYGKHRVFNTPLSEQGIVGFGIGLAVSG-ATAIAEIQFAD 84 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g-~~-~~~~~~~~-~~~p~r~~~~gIaE~~~v~~a~GlA~~G-~~p~~~it~~~ 84 (325)
.++++|.++++.+|+++++++|++.++ ++ +.+..|.+ +| |+||+|+||+|++|+++|+|+|++| +|||++ ||++
T Consensus 354 a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~-t~~~ 431 (651)
T 2e6k_A 354 ASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRAYGG-TFLV 431 (651)
T ss_dssp HHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGG
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEEEEE-eHHH
Confidence 344445558899999999999997321 11 12466887 99 9999999999999999999999998 999999 8999
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
|+.++++||+ +++.+++|... +.++.|. .| +|+|||+.+|++++|++||++|++|+|++|++.++++|+
T Consensus 432 F~~~~~~air-~~a~~~lpvv~--------~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~ 502 (651)
T 2e6k_A 432 FSDYMRPAIR-LAALMGVPTVF--------VFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVAL 502 (651)
T ss_dssp GGGGSHHHHH-HHHHHTCCCEE--------EEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcCCCEEE--------EEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHH
Confidence 9999999987 58877765421 1123332 45 699999999999999999999999999999999999999
Q ss_pred hC-CCcEEEecccccccccccCCCCCCc-ccCCCceeEeeeC--CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecc
Q psy8699 163 KD-KDPCIFFEPKVLYRAAVEDVPEDYY-ELPLDKADILVAG--TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 163 ~~-~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~gk~~~~~~g--~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
+. ++|++||++|.. .+.++.+.+ .++.| +++++++ .|++||++|+++..|++|++.|+++ ||+++|||++
T Consensus 503 ~~~~~Pv~i~~~r~~----~~~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~-Gi~~~Vv~~~ 576 (651)
T 2e6k_A 503 RRKEGPTALVLTRQA----VPLLSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREK-GVRVRVVSLP 576 (651)
T ss_dssp HCCSSCEEEECCSSC----BCCCCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred HcCCCCEEEEEeCCC----CCCCCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhc-CCcEEEEecC
Confidence 97 899999887642 333432222 35667 5778887 8999999999999999999999999 9999999999
Q ss_pred cccCCCHHH---HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC-----CCcccccccCCC
Q psy8699 239 SILPWDRET---VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT-----PFPHIFEPFYIP 310 (325)
Q Consensus 239 ~l~P~d~~~---l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~-----~~~~~~~~~~l~ 310 (325)
|++|||.+. +.+.++..++++++|++.. +||++.+ + .++ |.+. +..++++.+++
T Consensus 577 ~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v--------------~-~~i-g~d~f~~sg~~~~l~~~~gl- 638 (651)
T 2e6k_A 577 SFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA--------------H-KVV-ALDRFGASAPYPEVYERLGF- 638 (651)
T ss_dssp CHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------S-EEE-CCCSCCCSCCTTHHHHHTTC-
T ss_pred cCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC--------------C-CEE-EeCCCCCCCCHHHHHHHhCC-
Confidence 999999985 4444444578999999966 8887543 2 344 5532 23356788899
Q ss_pred CHHHHHHHHHHHh
Q psy8699 311 DKWRCLEAVKQIT 323 (325)
Q Consensus 311 ~~~~I~~~i~~~~ 323 (325)
|+++|+++|++++
T Consensus 639 ~~~~I~~~i~~~l 651 (651)
T 2e6k_A 639 TPERVAEAFLSLV 651 (651)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998764
No 19
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=7.5e-46 Score=377.73 Aligned_cols=280 Identities=13% Similarity=0.117 Sum_probs=226.0
Q ss_pred hHHHHHHHHHhcCCCEEEEcCcCCCCc-ccc-c--chhHHH-HhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 9 GFFQSSPSQLLSSQGGVLFGEDVGFGG-VFR-C--SLGLQE-KYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 9 ~~~~a~~~~~~~~~~vv~~~~D~~~~g-~~~-~--~~~~~~-~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
.+.++|.++++++|+++++++|++.++ ++. . +..|.+ +| |+||+|+||+|++|+++|+|+|++ |++||++ +|
T Consensus 357 a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~ 434 (673)
T 1r9j_A 357 ASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TF 434 (673)
T ss_dssp HHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EE
T ss_pred HHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCCEEEEE-eh
Confidence 344455558999999999999997322 210 0 234887 99 999999999999999999999999 5999999 79
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLS 160 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~ 160 (325)
++|+.++++||++ ++.+++|.. ++.++.|. .| +|+|||+++|+++++++||++|++|+|++|++.++++
T Consensus 435 ~~F~~~~~~~ir~-~a~~~~pvv--------~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~ 505 (673)
T 1r9j_A 435 LNFIGYALGAVRL-AAISHHRVI--------YVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAV 505 (673)
T ss_dssp GGGGGGGHHHHHH-HHHHTCCCE--------EEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCCCEE--------EEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHH
Confidence 9999999999985 887666542 11122332 45 6999999999999999999999999999999999999
Q ss_pred hHhC-CCcEEEecccccccccccCCCCCCc-ccCCCceeEeeeC--CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEe
Q psy8699 161 CIKD-KDPCIFFEPKVLYRAAVEDVPEDYY-ELPLDKADILVAG--TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 161 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~gk~~~~~~g--~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~ 236 (325)
|++. ++|++||++|. ..+.++.+.+ .+++| ++++++| .|++||++|+++.+|++|++.|+++ |+++|||
T Consensus 506 a~~~~~~Pv~i~~~r~----~~~~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~--i~~~Vv~ 578 (673)
T 1r9j_A 506 ALSSIHTPTVLCLSRQ----NTEPQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE--LRVRVVS 578 (673)
T ss_dssp HHHCTTCCEEEECCSS----EECCCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT--CCEEEEE
T ss_pred HHHhCCCeEEEEEcCC----CCCCCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc--CCEEEEe
Confidence 9997 99999977753 3344444333 46788 6788887 8999999999999999999999875 9999999
Q ss_pred cccccCCCHHH---HHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC-----CCcccccccC
Q psy8699 237 LVSILPWDRET---VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT-----PFPHIFEPFY 308 (325)
Q Consensus 237 ~~~l~P~d~~~---l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~-----~~~~~~~~~~ 308 (325)
++|++|||.+. +.++++++.++|++|++.. +||++.+ ++. + |.+. +..++++.++
T Consensus 579 ~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v--------------~~~-~-g~d~f~~sg~~~~L~~~~g 641 (673)
T 1r9j_A 579 MPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS--------------HAH-V-GMSGFGASAPAGVLYKKFG 641 (673)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------SEE-E-SCSSCCCSSCHHHHHHHTT
T ss_pred CCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc--------------Cce-E-EeccCCCCCCHHHHHHHHC
Confidence 99999999985 7888888888999999965 8876532 222 4 5532 2235678889
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8699 309 IPDKWRCLEAVKQITR 324 (325)
Q Consensus 309 l~~~~~I~~~i~~~~~ 324 (325)
+ |+++|+++|+++++
T Consensus 642 ~-~~~~I~~~i~~~l~ 656 (673)
T 1r9j_A 642 I-TVEEVVRTGRELAK 656 (673)
T ss_dssp C-SHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHH
Confidence 9 99999999999874
No 20
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.4e-43 Score=368.98 Aligned_cols=297 Identities=19% Similarity=0.282 Sum_probs=239.1
Q ss_pred HHHHHHHHHhcCCCEEEEcCcCCCC---------------cccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCC
Q psy8699 10 FFQSSPSQLLSSQGGVLFGEDVGFG---------------GVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGA 74 (325)
Q Consensus 10 ~~~a~~~~~~~~~~vv~~~~D~~~~---------------g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~ 74 (325)
+..||.++++++++|+++++|++.| +.|..+..|.++|||+||+|+||+|++++|+|+|+|+.|.
T Consensus 597 e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~ 676 (933)
T 2jgd_A 597 ENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEP 676 (933)
T ss_dssp HHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCC
Confidence 3446677999999999999999864 3445678899999999999999999999999999999999
Q ss_pred e--EEEEecccccHH---HHHHHHHHHH-hhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHc--CCCCcEEE
Q psy8699 75 T--AIAEIQFADYIF---PAFDQIVNEA-AKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFA--HTPGIKVV 146 (325)
Q Consensus 75 ~--p~~~it~~~F~~---ra~dqi~~~~-~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~--~ip~~~v~ 146 (325)
+ |+++++|++|++ |++|||++++ ++.... .+ ++++.+.|..|.|++||++.++++++ ++|||+|+
T Consensus 677 ~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~------~~-vv~~l~~G~~g~G~~Hss~~~E~~l~~~~~pnm~V~ 749 (933)
T 2jgd_A 677 RTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRM------CG-LVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVC 749 (933)
T ss_dssp TSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCC------CC-CEEEEECCCSSSCTTSSCCCHHHHHHTCCTTCCEEE
T ss_pred CCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccC------CC-EEEEEeCCCCCCCcccccchHHHHHHHhCCCCeEEE
Confidence 8 998768999996 9999999888 642211 12 56667777777799999988888775 56999999
Q ss_pred eeCCHHHHHHHHHHhH-hC-CCcEEEeccccccccccc-----CCCCCCcccCCCceeEeeeCCcE--EEEEechhHHHH
Q psy8699 147 IPRGPYKAKGLLLSCI-KD-KDPCIFFEPKVLYRAAVE-----DVPEDYYELPLDKADILVAGTDV--TLIGWGTQVHVL 217 (325)
Q Consensus 147 ~P~~~~e~~~~~~~a~-~~-~~Pv~i~~~~~l~~~~~~-----~~~~~~~~~~~gk~~~~~~g~dv--~ii~~G~~~~~a 217 (325)
+|+|+.|++.++++++ +. ++|++||+||+++|.... +++..++.+++|++.+++ |.|+ +|+++|.+...+
T Consensus 750 ~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l 828 (933)
T 2jgd_A 750 VPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDL 828 (933)
T ss_dssp CCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHH
T ss_pred ecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHH
Confidence 9999999999999985 64 899999999999986421 122234667789888777 7788 788888887778
Q ss_pred HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC---cEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEc
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG---RVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVT 294 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~---~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~ 294 (325)
++|++.|+++ +++||++++|+|||.+.|.+++++++ +||++||+..+||+|+.|++.+.+..+. ..|++++
T Consensus 829 ~aa~~~l~~~---~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~v- 902 (933)
T 2jgd_A 829 LEQRRKNNQH---DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYA- 902 (933)
T ss_dssp HHHHHHTTCC---SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEE-
T ss_pred HHHHHHcccC---CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEE-
Confidence 7888888754 89999999999999999999999998 8999999999999999999999886421 3578888
Q ss_pred ccCCC-Cccc-ccccCCCCHHHHHHHHH
Q psy8699 295 GYDTP-FPHI-FEPFYIPDKWRCLEAVK 320 (325)
Q Consensus 295 g~~~~-~~~~-~~~~~l~~~~~I~~~i~ 320 (325)
|.++. .|.. ++....+..+.|++++.
T Consensus 903 g~~d~~~pa~g~~~~h~~~~~~i~~~a~ 930 (933)
T 2jgd_A 903 GRPASASPAVGHMSVHQKQQQDLVNDAL 930 (933)
T ss_dssp EECCCSSSSCSCHHHHHHHHHHHHHHHH
T ss_pred ecCCcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 55543 3422 33333447778877764
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.6e-43 Score=366.63 Aligned_cols=275 Identities=20% Similarity=0.232 Sum_probs=224.3
Q ss_pred HHHhcCCCEEEEcCcCCC---------------CcccccchhH------HHHhCCCceeechhhHHHHHHHHHHHhccC-
Q psy8699 16 SQLLSSQGGVLFGEDVGF---------------GGVFRCSLGL------QEKYGKHRVFNTPLSEQGIVGFGIGLAVSG- 73 (325)
Q Consensus 16 ~~~~~~~~vv~~~~D~~~---------------~g~~~~~~~~------~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G- 73 (325)
++++++++|+++++|++. |++|..+.+| .++++|+||+|+||+|++++|+|+|+|+.|
T Consensus 529 ~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~ 608 (868)
T 2yic_A 529 SLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNP 608 (868)
T ss_dssp HHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCT
T ss_pred HHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCC
Confidence 478999999999999986 5566778899 775559999999999999999999999999
Q ss_pred -CeEEEEecccccHHHH---HHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCCh--hHHHHHcCCCCcEEEe
Q psy8699 74 -ATAIAEIQFADYIFPA---FDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQ--SPEAYFAHTPGIKVVI 147 (325)
Q Consensus 74 -~~p~~~it~~~F~~ra---~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~--~d~~~~~~ip~~~v~~ 147 (325)
.+|+++++|++|++++ +||+++++...+.. .++ ++++.++|..|.|++||+. +++..++++|||+|++
T Consensus 609 ~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~-----~~~-vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~pnm~V~~ 682 (868)
T 2yic_A 609 DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQ-----LSD-VVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAM 682 (868)
T ss_dssp TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCC-----CCC-CEEEEECCCSSSCTTSSCCCHHHHHHHCCTTSCEEEC
T ss_pred CCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCC-----CCC-EEEEecCCCCCCChhhcCCcHHHHHhcCCCCCCEEEE
Confidence 5677787999999877 99999876422221 233 7778787777788899874 4444559999999999
Q ss_pred eCCHHHHHHHHHHhHhC--CCcEEEecccccccccccCCC-----CCCcccCCCceeE---eeeCCcE--EEEEechhHH
Q psy8699 148 PRGPYKAKGLLLSCIKD--KDPCIFFEPKVLYRAAVEDVP-----EDYYELPLDKADI---LVAGTDV--TLIGWGTQVH 215 (325)
Q Consensus 148 P~~~~e~~~~~~~a~~~--~~Pv~i~~~~~l~~~~~~~~~-----~~~~~~~~gk~~~---~~~g~dv--~ii~~G~~~~ 215 (325)
|+|+.|++.+++.++.. ++|+||++||.++|.+.+..+ ..++..++|++.+ +++|.|+ +|||+|.+ .
T Consensus 683 Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~ 761 (868)
T 2yic_A 683 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-Y 761 (868)
T ss_dssp CCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-H
T ss_pred eCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-H
Confidence 99999999999998875 599999999999997643211 1123336898887 7888999 99999999 6
Q ss_pred HHHHHHHHHHhhcC-CcEEEEecccccCCCHHHHHHHHhccCc---EEEEecCCcCCChHHHHHHHHHhhccccCCCCeE
Q psy8699 216 VLREVAGLAKEQLG-VSCEVIDLVSILPWDRETVFQSARKTGR---VIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIR 291 (325)
Q Consensus 216 ~a~~A~~~L~~~~g-i~~~vi~~~~l~P~d~~~l~~~~~~~~~---vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~ 291 (325)
.++++++ +++ | ++++|||+++|+|||.+.|.++++++++ ||++||++.+||+++.|++.+.+. +..++.|+.
T Consensus 762 ~~l~aa~--~~~-g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~ 837 (868)
T 2yic_A 762 YELAARK--AKE-NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLK 837 (868)
T ss_dssp HHHHHHH--HHH-TCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCE
T ss_pred HHHHHHH--HhC-CCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeE
Confidence 6666665 566 8 9999999999999999999999999987 899999999999999999999884 212356898
Q ss_pred EEcccCCCCc
Q psy8699 292 RVTGYDTPFP 301 (325)
Q Consensus 292 ~~~g~~~~~~ 301 (325)
+++..+.+.|
T Consensus 838 ~vg~~d~~~p 847 (868)
T 2yic_A 838 RISRRAMSAP 847 (868)
T ss_dssp EEEECCCSSS
T ss_pred EeccCCcCCC
Confidence 9955554444
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.6e-43 Score=369.95 Aligned_cols=275 Identities=20% Similarity=0.247 Sum_probs=226.9
Q ss_pred HHHhcCCCEEEEcCcCCC---------------CcccccchhH------HHHhCCCceeechhhHHHHHHHHHHHhccC-
Q psy8699 16 SQLLSSQGGVLFGEDVGF---------------GGVFRCSLGL------QEKYGKHRVFNTPLSEQGIVGFGIGLAVSG- 73 (325)
Q Consensus 16 ~~~~~~~~vv~~~~D~~~---------------~g~~~~~~~~------~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G- 73 (325)
++++++++|+++++|++. |++|..+.+| .++++|+|++|+||+|++++|+|+|+|+.|
T Consensus 774 ~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~ 853 (1113)
T 2xt6_A 774 SLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNP 853 (1113)
T ss_dssp HHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCT
T ss_pred HHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCC
Confidence 479999999999999986 4556778899 775669999999999999999999999999
Q ss_pred -CeEEEEecccccHHHH---HHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHH--cCCCCcEEEe
Q psy8699 74 -ATAIAEIQFADYIFPA---FDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYF--AHTPGIKVVI 147 (325)
Q Consensus 74 -~~p~~~it~~~F~~ra---~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~--~~ip~~~v~~ 147 (325)
.+|+++++|++|++++ +||+++++...+.. .++ ++++.++|..|.|++||+..+++++ +++|||+|++
T Consensus 854 ~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~-----~~~-vv~~lp~G~~G~G~~Hs~~~~E~~l~l~~~pnm~V~~ 927 (1113)
T 2xt6_A 854 DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQ-----LSD-VVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAM 927 (1113)
T ss_dssp TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCC-----CCC-CEEEEECCCSSSCTTSSCCCHHHHHHHCCTTSCEEEC
T ss_pred CCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCC-----CCC-EEEEeCCCCCCCChhhhcccHHHHHhcCCCCCcEEEe
Confidence 6678888999999877 99999876432222 233 7788887777788889886677766 9999999999
Q ss_pred eCCHHHHHHHHHHhHhC--CCcEEEecccccccccccCCC-----CCCcccCCCceeE---eeeCCcE--EEEEechhHH
Q psy8699 148 PRGPYKAKGLLLSCIKD--KDPCIFFEPKVLYRAAVEDVP-----EDYYELPLDKADI---LVAGTDV--TLIGWGTQVH 215 (325)
Q Consensus 148 P~~~~e~~~~~~~a~~~--~~Pv~i~~~~~l~~~~~~~~~-----~~~~~~~~gk~~~---~~~g~dv--~ii~~G~~~~ 215 (325)
|+|+.|++.+++.++.. ++|++|++||+++|.+.+..+ ..++..++|++.+ +++|.|+ +|||+|.+ .
T Consensus 928 Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~ 1006 (1113)
T 2xt6_A 928 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-Y 1006 (1113)
T ss_dssp CSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-H
T ss_pred cCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-H
Confidence 99999999999998875 599999999999998643211 1123336898887 7889999 99999998 6
Q ss_pred HHHHHHHHHHhhcC-CcEEEEecccccCCCHHHHHHHHhccCc---EEEEecCCcCCChHHHHHHHHHhhccccCCCCeE
Q psy8699 216 VLREVAGLAKEQLG-VSCEVIDLVSILPWDRETVFQSARKTGR---VIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIR 291 (325)
Q Consensus 216 ~a~~A~~~L~~~~g-i~~~vi~~~~l~P~d~~~l~~~~~~~~~---vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~ 291 (325)
.+++|++ +++ | ++++|||+++|+|||.+.|.++++++++ ++++||+..+||+|+.|++.+.+. +..++.|+.
T Consensus 1007 ~~l~aa~--~~~-g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~ 1082 (1113)
T 2xt6_A 1007 YELAARK--AKE-NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLK 1082 (1113)
T ss_dssp HHHHHHH--HHH-TCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCE
T ss_pred HHHHHHH--HhC-CCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeE
Confidence 6676666 566 8 9999999999999999999999999988 999999999999999999999884 222356898
Q ss_pred EEcccCCCCc
Q psy8699 292 RVTGYDTPFP 301 (325)
Q Consensus 292 ~~~g~~~~~~ 301 (325)
+++..+.+.|
T Consensus 1083 ~vg~~d~~~p 1092 (1113)
T 2xt6_A 1083 RISRRAMSAP 1092 (1113)
T ss_dssp EEEECCCSSS
T ss_pred EEccCCcCCC
Confidence 9955555544
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=1.8e-39 Score=336.92 Aligned_cols=293 Identities=14% Similarity=0.114 Sum_probs=217.5
Q ss_pred chHHHHHHHHHhcC---CCEEEEcCcCCC--Cc-----ccc----cchhHH-----------HHhCCCceeechhhHHHH
Q psy8699 8 TGFFQSSPSQLLSS---QGGVLFGEDVGF--GG-----VFR----CSLGLQ-----------EKYGKHRVFNTPLSEQGI 62 (325)
Q Consensus 8 ~~~~~a~~~~~~~~---~~vv~~~~D~~~--~g-----~~~----~~~~~~-----------~~~~p~r~~~~gIaE~~~ 62 (325)
..|.++|.++++.+ ++++++++|+.. |+ +.+ ....|. +.| |+||+|+||+|++|
T Consensus 496 ~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~GIaE~~a 574 (886)
T 2qtc_A 496 IAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQEGINELGA 574 (886)
T ss_dssp HHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEECCSCHHHH
T ss_pred HHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeeeccCchhh
Confidence 34555555677877 999999999542 21 111 013343 577 89999999999995
Q ss_pred -H---HHHHHHhccC--CeEEEEeccccc-HHHHHHHHHHHHhhcccccCCceeccceEEeccC-ccCCCCCCCCChhHH
Q psy8699 63 -V---GFGIGLAVSG--ATAIAEIQFADY-IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAVGHGALYHSQSPE 134 (325)
Q Consensus 63 -v---~~a~GlA~~G--~~p~~~it~~~F-~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~g~g~th~~~~d~ 134 (325)
+ ++|+|+|++| ++||+. +|++| ++|++||+++++++++. ++...+ .... +..++|+|||+.+|+
T Consensus 575 ~~~~~g~a~GlA~~G~~~~P~~~-~ys~F~~qRa~Dqi~~~~d~~~~---~v~l~~----~~~~~~~g~dG~tHq~~~~~ 646 (886)
T 2qtc_A 575 GCSWLAAATSYSTNNLPMIPFYI-YYSMFGFQRIGDLCWAAGDQQAR---GFLIGG----TSGRTTLNGEGLQHEDGHSH 646 (886)
T ss_dssp HHHHHHHHTHHHHTSCCCEEEEE-EEGGGSHHHHHHHHHHHHHTTCC---CEEEEE----SCSTTTSTTTCTTTCCSCHH
T ss_pred hhHHHHHHHHHHhcCCCceEEEE-EehHHHHHHHHHHHHHHHHHhcC---CEEEEE----ecCcccCCCCCCccCCcchH
Confidence 5 7999999999 899998 79999 69999999999985443 323211 1111 223468999999999
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHhHhC-CCc----EEEecccccccccccCCCCCC-cccCCCceeEeeeC----Cc
Q psy8699 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIKD-KDP----CIFFEPKVLYRAAVEDVPEDY-YELPLDKADILVAG----TD 204 (325)
Q Consensus 135 ~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~-~~P----v~i~~~~~l~~~~~~~~~~~~-~~~~~gk~~~~~~g----~d 204 (325)
++++++||++|++|+|++|++.++++|++. ++| +++++++....-..+.++.+. ..+ +++++++++| .|
T Consensus 647 a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~~~~~~-~gga~vlr~g~~~~~d 725 (886)
T 2qtc_A 647 IQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGI-RKGIYKLETIEGSKGK 725 (886)
T ss_dssp HHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTTCHHHH-HHTCEEEEEECCSSEE
T ss_pred HHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcchhhhc-cCceEEEEecCCCCCC
Confidence 999999999999999999999999999985 779 999887532000013444321 234 7889999986 79
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHH-------------------HHHHhccCcEEEEecCC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV-------------------FQSARKTGRVIIAHEAP 265 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l-------------------~~~~~~~~~vivvEe~~ 265 (325)
++||++|+++.+|++|++.|++++||+++|||++|++|||++.+ .+.+.. +.+|++|++.
T Consensus 726 VtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~ 804 (886)
T 2qtc_A 726 VQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYM 804 (886)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSC
T ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEecc
Confidence 99999999999999999999887799999999999999998853 333334 5677777764
Q ss_pred cCCChHHHHHHHHHhhccccCC-CCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHHHhh
Q psy8699 266 LTSGFGAELAASIQDKCFLSLE-APIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 266 ~~gglg~~v~~~l~e~~~~~~~-~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
. |+++.+.++ ++ .++..+ |.+ .|+ ++++.+++ |+++|++++++++.
T Consensus 805 ~--g~~~~~~~~--------~~~~~~~~l-G~D-~Fg~sg~~~~L~~~~Gl-d~e~Iv~~a~~~L~ 857 (886)
T 2qtc_A 805 K--LFAEQVRTY--------VPADDYRVL-GTD-GFGRSDSRENLRHHFEV-DASYVVVAALGELA 857 (886)
T ss_dssp T--HHHHTTGGG--------CCSSCEEEE-CCC-SCCCCCCHHHHHHHTTC-SHHHHHHHHHHHHH
T ss_pred c--chHHHHHHH--------cCCCCeEEE-EeC-CCCCCCCHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 4 565544333 33 466666 764 354 56788999 99999999998763
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=7.6e-37 Score=312.47 Aligned_cols=296 Identities=12% Similarity=0.109 Sum_probs=226.6
Q ss_pred chHHHHHHHHHhcCCC-EEEEcCcCCCCcccccchhHHHH---------hC-C--------CceeechhhHHHHHHHHHH
Q psy8699 8 TGFFQSSPSQLLSSQG-GVLFGEDVGFGGVFRCSLGLQEK---------YG-K--------HRVFNTPLSEQGIVGFGIG 68 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~-vv~~~~D~~~~g~~~~~~~~~~~---------~~-p--------~r~~~~gIaE~~~v~~a~G 68 (325)
..++++|.++++.+|+ ++++++|+..+.. +..|.+. +. | +|||+ ||+||+|+++++|
T Consensus 433 ra~g~~L~~l~~~~p~~~vv~sADl~~Sn~---t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~G 508 (845)
T 3ahc_A 433 RALGAYCRDIIKNNPDSFRIFGPDETASNR---LNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEA 508 (845)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESSCTTTTT---CGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCcccc---HHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHH
Confidence 4567889999999999 9999999975432 5555544 41 4 89999 9999999999999
Q ss_pred HhccCCeEEEEecccccH---HHHHHH----HHHHHhhccc--ccCCceeccceEEeccCcc-CC-CCCCCCChhHHH--
Q psy8699 69 LAVSGATAIAEIQFADYI---FPAFDQ----IVNEAAKYRY--RSGNQFSCGNLTIRAPCMA-VG-HGALYHSQSPEA-- 135 (325)
Q Consensus 69 lA~~G~~p~~~it~~~F~---~ra~dq----i~~~~~~~~~--~~~~~~~~~~~v~~~~~g~-~g-~g~th~~~~d~~-- 135 (325)
+|++|.+||++ +|++|+ .|+++| ||++++.+.| +..++. .+.++.+. .| +|+|||+.+++.
T Consensus 509 lal~G~~~f~~-t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~-----~v~Th~si~~GeDGpTHQ~~e~~d~l 582 (845)
T 3ahc_A 509 YLLTGRHGIWS-SYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVN-----LLVSSHVWRQDHNGFSHQDPGVTSLL 582 (845)
T ss_dssp HHHTTCEEEEE-EEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEE-----EEEESCGGGCTTTCGGGCCCTHHHHH
T ss_pred HHhcCCCCcee-cchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceE-----EEEeCCceeecCCCCCCCCcHHHHHH
Confidence 99999999999 899997 799999 9977454422 121222 22334444 45 599999965544
Q ss_pred HHc---CCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEecccccccccccCCCCCCc---ccCCCceeEe---ee--C--
Q psy8699 136 YFA---HTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYY---ELPLDKADIL---VA--G-- 202 (325)
Q Consensus 136 ~~~---~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~---~~~~gk~~~~---~~--g-- 202 (325)
.++ .+||++|+.|+|++|+..+++.|++.++|++++. +.|++.|.++..+. .+..|++.+. ++ +
T Consensus 583 ~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v---~sRq~~p~~~~~~~a~~~~~~G~~v~~~as~d~~g~~ 659 (845)
T 3ahc_A 583 INKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIF---AGKQPAPTWVTLDEARAELEAGAAEWKWASNAENNDE 659 (845)
T ss_dssp GGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEE---CCCSCEEECSCHHHHHHHHHHSEEECTTTCCCSSTTT
T ss_pred HHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEE---ecCCCCCccCCchhhhhhhcCCeEEEEeecccccCCC
Confidence 444 6799999999999999999999999877777732 25677776654332 3567766655 35 4
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhhcCCcEEEEecccc---cCCCHHHHHHHHhccCcEEEEecCCc--CCChHHHHHH
Q psy8699 203 TDVTLIGWGTQ-VHVLREVAGLAKEQLGVSCEVIDLVSI---LPWDRETVFQSARKTGRVIIAHEAPL--TSGFGAELAA 276 (325)
Q Consensus 203 ~dv~ii~~G~~-~~~a~~A~~~L~~~~gi~~~vi~~~~l---~P~d~~~l~~~~~~~~~vivvEe~~~--~gglg~~v~~ 276 (325)
.|++||++|+. +.+|++|+++|+++ ||+++|||+.++ +|.+++.+....+.++.|+++|+|.+ .||+++.|++
T Consensus 660 ~DVvLiAtGsev~~EAL~AA~~L~~~-GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~e 738 (845)
T 3ahc_A 660 VQVVLASAGDVPTQELMAASDALNKM-GIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDVRG 738 (845)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHHHHT-TCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHHHH
T ss_pred CCEEEEEeccHHHHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHHHH
Confidence 89999999976 45599999999999 999999999999 66654443334456678899999976 6999999999
Q ss_pred HHHhhccccCCCCeEEEcccCCCCc------ccccccCCCCHHHHHHHHHHHh
Q psy8699 277 SIQDKCFLSLEAPIRRVTGYDTPFP------HIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 277 ~l~e~~~~~~~~~v~~~~g~~~~~~------~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
.+.++. .+.++.++ |.++ ++ +++..+++ |.++|++++++++
T Consensus 739 ll~~r~---~~~~l~v~-G~~d-~G~tgtp~eLl~~~gl-d~~~Iv~~a~~~l 785 (845)
T 3ahc_A 739 LIYDRP---NHDNFHVV-GYKE-QGSTTTPFDMVRVNDM-DRYALQAAALKLI 785 (845)
T ss_dssp HTTTST---TGGGEEEE-CCCS-CCCSCCHHHHHHTTTC-SHHHHHHHHHHHH
T ss_pred HHHhCC---CCceEEEE-eccC-CCCCCCHHHHHHHhCc-CHHHHHHHHHHHc
Confidence 998761 12467666 7776 44 56788999 9999999999876
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.95 E-value=5.1e-29 Score=239.46 Aligned_cols=283 Identities=11% Similarity=0.092 Sum_probs=104.3
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeEEEEeccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQE---KYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~---~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~ 83 (325)
++-.+|+.+ +...+.++++.-+-...+.. .+.|.+ ++ ..+|+++. +|++++++|.|+|+.|.||+++ |.+
T Consensus 23 ~~GneAva~~~~~ag~~~v~~yPgtP~t~i---~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~-ts~ 96 (395)
T 1yd7_A 23 IQGDEAIARAAILAGCRFYAGYPITPASEI---FEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMTA-TSG 96 (395)
T ss_dssp EEHHHHHHHHHHHHTCCEEEECCBTTTBCH---HHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEEE-EET
T ss_pred eEHHHHHHHHHHHcCCCEEEEEECcchHHH---HHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEEE-eCc
Confidence 577899998 45668898888877664322 455555 45 36788887 9999999999999999999999 899
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccC-CCC-CCCCChhH--HHHHcCCC--CcEEEeeCCHHHHHHH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAV-GHG-ALYHSQSP--EAYFAHTP--GIKVVIPRGPYKAKGL 157 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-g~g-~th~~~~d--~~~~~~ip--~~~v~~P~~~~e~~~~ 157 (325)
+++.+++|||.+ ++..+. | ++++...+.. +.| ++++.++| ..++.+.| ++.+++|+|++|++++
T Consensus 97 ~G~~~~~d~l~~-aa~~~~--------P-~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l 166 (395)
T 1yd7_A 97 PGFSLMQENIGY-AVMTET--------P-VVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDF 166 (395)
T ss_dssp THHHHHTTTCC-----CCC--------C-EEEEEEC--------------------------CCCCEEECCCSHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhcCC--------C-EEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHH
Confidence 999889999975 442222 2 4444322221 112 33333333 34556655 9999999999999999
Q ss_pred HHHhHh----CCCcEEEecccccccccc----c---CCC----------C---CCccc--CC--------Cce-------
Q psy8699 158 LLSCIK----DKDPCIFFEPKVLYRAAV----E---DVP----------E---DYYEL--PL--------DKA------- 196 (325)
Q Consensus 158 ~~~a~~----~~~Pv~i~~~~~l~~~~~----~---~~~----------~---~~~~~--~~--------gk~------- 196 (325)
+++|++ .+.||++++|+.+++... + .++ + .++.. +. |..
T Consensus 167 ~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~ 246 (395)
T 1yd7_A 167 TIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTG 246 (395)
T ss_dssp HHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecc
Confidence 999994 689999999987665421 0 010 0 01111 10 000
Q ss_pred ---------------------------------------eEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEec
Q psy8699 197 ---------------------------------------DILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 197 ---------------------------------------~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~ 237 (325)
.+-++|+|++||++|+++..+++|++.|+++ |++++||++
T Consensus 247 ~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~-Gi~v~vi~~ 325 (395)
T 1yd7_A 247 LTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREE-GIKAGLLKI 325 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHc-CCceEEEEe
Confidence 1123578999999999999999999999999 999999999
Q ss_pred ccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHH
Q psy8699 238 VSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLE 317 (325)
Q Consensus 238 ~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~ 317 (325)
+++||||.+.|.++++++++|+|+||+. ||++++|.+.+.+. .++.++++.++ ..++++.|++
T Consensus 326 r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~~~~~~------~~~~~~gk~~g---------~~~~~~ei~~ 388 (395)
T 1yd7_A 326 ETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKEGANGK------AEVKLISKIGG---------EVHTPMEIFE 388 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHHHhcCC------CCeEEEeccCC---------CcCCHHHHHH
Confidence 9999999999999999999999999995 99999999887542 23434422221 1348999999
Q ss_pred HHHHHhh
Q psy8699 318 AVKQITR 324 (325)
Q Consensus 318 ~i~~~~~ 324 (325)
++++++|
T Consensus 389 ~i~~~~~ 395 (395)
T 1yd7_A 389 FIRREFK 395 (395)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 9888764
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.87 E-value=1.7e-20 Score=201.18 Aligned_cols=292 Identities=11% Similarity=0.092 Sum_probs=196.5
Q ss_pred chHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhH---HH-----HhCCCceeechhhHHHHHHHHHHHhccCCeEEEE
Q psy8699 8 TGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGL---QE-----KYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAE 79 (325)
Q Consensus 8 ~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~---~~-----~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~ 79 (325)
+.-.+|+...+....+++..-+=...+.. .+.+ .. .||..+.+....+|.+++++|.|+|++|.|++++
T Consensus 7 ~~GNeAvA~~a~ag~~~~~~YPITPstei---~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~ 83 (1231)
T 2c42_A 7 TDGNTATAHVAYAMSEVAAIYPITPSSTM---GEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTTTF 83 (1231)
T ss_dssp EEHHHHHHHHHHHHCSEEEECCCTTTHHH---HHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccHHHHHHHHHHHCCCEEEEECCCCchHH---HHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHhhh
Confidence 46678888866777888887776653222 2333 22 2555579999999999999999999999999999
Q ss_pred ecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 80 IQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 80 it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
|.++.+..+.|.|. .++..+.|.+ .+ ++.| .|.+.+-.++-.++| .+....+++.|++|+|++|+++++.
T Consensus 84 -Ts~~Gl~lm~e~l~-~~ag~~~P~V---i~--va~R--~g~~~glsi~~~hsd-~~~ar~~G~~vl~pss~QEa~dl~~ 153 (1231)
T 2c42_A 84 -TASQGLLLMIPNMY-KISGELLPGV---FH--VTAR--AIAAHALSIFGDHQD-IYAARQTGFAMLASSSVQEAHDMAL 153 (1231)
T ss_dssp -ECHHHHHHHHHHHH-HHHHTTCCCE---EE--EEEC--CCCSSSBCCSCCSHH-HHTTTTSSCEEEECCSHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHH-HHhCCCCCEE---EE--ECCC--CccCCCCcCCCchhh-HHHHhcCCcEEEECCCHHHHHHHHH
Confidence 89998888888886 4554444331 11 2222 122211123334445 3567789999999999999999999
Q ss_pred HhHh----CCCcEEEeccccc-cccccc-CCCC----------------------CCcccCCCc----------------
Q psy8699 160 SCIK----DKDPCIFFEPKVL-YRAAVE-DVPE----------------------DYYELPLDK---------------- 195 (325)
Q Consensus 160 ~a~~----~~~Pv~i~~~~~l-~~~~~~-~~~~----------------------~~~~~~~gk---------------- 195 (325)
.|++ ++.||+++++..+ .+...+ ++++ .+.+++.|.
T Consensus 154 ~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~ 233 (1231)
T 2c42_A 154 VAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANP 233 (1231)
T ss_dssp HHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHH
T ss_pred HHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCCceecCCCcCcchhhhhHhhhhh
Confidence 9865 6999999998743 332100 0100 001111121
Q ss_pred --------------------------eeEe-eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHH
Q psy8699 196 --------------------------ADIL-VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV 248 (325)
Q Consensus 196 --------------------------~~~~-~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l 248 (325)
.... .+++|++||+||+++..+++|++.|+++ |++++||++++++|||.+.|
T Consensus 234 ~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~-G~kvgvl~lr~~rPfp~~~i 312 (1231)
T 2c42_A 234 YYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAAK-GEKIGLIKVRLYRPFVSEAF 312 (1231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHTT-TCCEEEEEESEEESCCHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHhc-CCceEEEEEEEeCCCCHHHH
Confidence 1111 3578999999999999999999999999 99999999999999999999
Q ss_pred HHHH-hccCcEEEEecCCcCCC----hHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHHHHh
Q psy8699 249 FQSA-RKTGRVIIAHEAPLTSG----FGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 249 ~~~~-~~~~~vivvEe~~~~gg----lg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
.+++ +++++|+|+|++...|. +..++...+.... -..|+... |. ++ +.-..+ +++.|.+.+.++.
T Consensus 313 ~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~-gr---~g--l~g~~~-tp~~i~~~~~~l~ 382 (1231)
T 2c42_A 313 FAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILA-GR---YG--LGSKEF-SPAMVKSVYDNMS 382 (1231)
T ss_dssp HHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEE-EE---CC--GGGCCC-CHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEE-EE---EC--CCCCCC-CHHHHHHHHHHhh
Confidence 9998 66799999999843332 4455555554321 01133211 21 11 000124 8999988888764
No 27
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.69 E-value=9.5e-17 Score=128.43 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=87.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
+|+|++||+||+++..+++|++.|+++ |++++|+++++++|||.+.+.++++++++|+|+|++ ..||+++++...+.
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~-Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~-~~G~l~~~i~~~~~- 88 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEE-GISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESN-YTAQAAQMIKLYTG- 88 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHT-TCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCC-CCCCHHHHHHHHHC-
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHC-CCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECC-CCCcHHHHHHHHcC-
Confidence 578999999999999999999999998 999999999999999999999999999999999998 57999999876541
Q ss_pred hccccCCCCeEEEcccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 281 KCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 281 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
. .++..+.+.++. -+ +++.|.++++++++
T Consensus 89 -----~-~~~~~i~~~~G~--------~~-~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 89 -----I-DIKNKILKYNGR--------HM-TEDEILKSAKEILN 117 (118)
T ss_dssp -----C-CCCCCCCCBTTB--------CC-CHHHHHHHHHHHHH
T ss_pred -----C-CceeEEeeeCCe--------eC-CHHHHHHHHHHHhh
Confidence 1 122222222221 13 99999999999875
No 28
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=95.38 E-value=0.56 Score=45.73 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=88.9
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.+..+++.+.+ +..=+.++..+... ...|.+.+.++ +++.+ ..|++++.+|.|.|.. |...++..|.++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~i~~i~~-~~E~~Aa~~A~Gyar~tg~~~v~~~tsGp 73 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSN-------ALPFLKDFPEDFRYILA-LQEACVVGIADGYAQASRKPAFINLHSAA 73 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGG-------GHHHHTTCCTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcc-------hHHHHHHHhhcCcEEEE-CcHHHHHHHHHHHHHHhCCCEEEEEcCCh
Confidence 35678888744 45556666544211 23444443122 45544 6999999999999988 665566546777
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCc--cCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCM--AVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g--~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
.+..++.-+. ++...+.|. +++.+... ..+.+..++..+..++++.+..+ .+.+.+++++...++.|+
T Consensus 74 G~~N~~~~l~-~A~~~~~Pl--------l~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~ 143 (528)
T 1q6z_A 74 GTGNAMGALS-NAWNSHSPL--------IVTAGQQTRAMIGVEALLTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAI 143 (528)
T ss_dssp HHHHTHHHHH-HHHHTTCCE--------EEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhhcCCCE--------EEEeCCCcccccCCCcccccccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHH
Confidence 7766666665 344333332 22221111 11223322224666788887665 445566666666666666
Q ss_pred h----C-CCcEEEecccccc
Q psy8699 163 K----D-KDPCIFFEPKVLY 177 (325)
Q Consensus 163 ~----~-~~Pv~i~~~~~l~ 177 (325)
+ . ++||+|-.|..+.
T Consensus 144 ~~a~~~~~GPV~l~iP~d~~ 163 (528)
T 1q6z_A 144 HMASMAPQGPVYLSVPYDDW 163 (528)
T ss_dssp HHHHSSSCCCEEEEEEGGGT
T ss_pred HHHhcCCCCcEEEEechhhh
Confidence 5 2 5799999887654
No 29
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=95.34 E-value=0.15 Score=50.75 Aligned_cols=236 Identities=8% Similarity=-0.041 Sum_probs=129.6
Q ss_pred cchHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhC---CC-ceeechhhHHHHHHHHHHHhccCCeE-EEEe
Q psy8699 7 WTGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG---KH-RVFNTPLSEQGIVGFGIGLAVSGATA-IAEI 80 (325)
Q Consensus 7 ~~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~---p~-r~~~~gIaE~~~v~~a~GlA~~G~~p-~~~i 80 (325)
+++..++|.+ +.+.+=+.++..+... ...|.+.+. ++ +++. ...|++++.+|.|.|...-|| ++..
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~~i~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~ 74 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGT-------LSSLMDAMGEEENNVKFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVG 74 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTT-------THHHHTTSSSTTCCCEEEE-CSSHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCc-------hHHHHHHHHhcCCCCeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4567888888 4456666666655322 234444331 12 3444 579999999999999885444 4444
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
|+++.+..++.-+. ++...+.|. +++.+.......| +.+|..+..++++.+-.+ .+.+.+++++...++
T Consensus 75 tsGpG~~N~~~gl~-~A~~~~vPl--------l~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~ 144 (590)
T 1v5e_A 75 SGGPGASHLINGLY-DAAMDNIPV--------VAILGSRPQRELNMDAFQELNQNPMYDHIAVY-NRRVAYAEQLPKLVD 144 (590)
T ss_dssp CTTHHHHTTHHHHH-HHHHHTCCE--------EEEEEECCGGGTTTTCTTCCCCHHHHHTTCSE-EEECCSGGGHHHHHH
T ss_pred CcChHHHHHHHHHH-HHHhcCCCE--------EEEcCCCCcccCCCCcccccCHHHHHHhhccE-EEEeCCHHHHHHHHH
Confidence 67777766666664 344333322 2222211111112 235655667899998766 667788888888888
Q ss_pred HhHh----C-CCcEEEeccccccccccc-CC------CCCCcccC-CCce------eEeee-CCcEEEEEechhHHHHHH
Q psy8699 160 SCIK----D-KDPCIFFEPKVLYRAAVE-DV------PEDYYELP-LDKA------DILVA-GTDVTLIGWGTQVHVLRE 219 (325)
Q Consensus 160 ~a~~----~-~~Pv~i~~~~~l~~~~~~-~~------~~~~~~~~-~gk~------~~~~~-g~dv~ii~~G~~~~~a~~ 219 (325)
.|++ . .+||+| .|..+.....+ .. ....+..+ .... ..+.. ..-++|++.|. . .+.+
T Consensus 145 ~A~~~A~~~~~GPV~l-iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~ 221 (590)
T 1v5e_A 145 EAARMAIAKRGVAVLE-VPGDFAKVEIDNDQWYSSANSLRKYAPIAPAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGP 221 (590)
T ss_dssp HHHHHHHHTTSEEEEE-EETTGGGCEEEGGGCCCCGGGCCCCCCCCCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHH
T ss_pred HHHHHHhcCCCceEEE-EccchhhcccCcccccccccccccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHH
Confidence 8876 2 489999 99876543211 00 00001000 0000 11222 24466666665 4 5566
Q ss_pred HHHHHHhhcCCcEEEEecccc------cCC--------CHHHHHHHHhccCcEEEEecC
Q psy8699 220 VAGLAKEQLGVSCEVIDLVSI------LPW--------DRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 220 A~~~L~~~~gi~~~vi~~~~l------~P~--------d~~~l~~~~~~~~~vivvEe~ 264 (325)
++..|.++.|+-+- -..... .|+ ......+.+++.+.||++...
T Consensus 222 ~l~~lae~~~~Pv~-~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~ 279 (590)
T 1v5e_A 222 AVQELARKIKAPVI-TTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSN 279 (590)
T ss_dssp HHHHHHHHHTCCEE-ECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCC
T ss_pred HHHHHHHHHCCCEE-EccccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCC
Confidence 66666655465441 111111 111 123445667778888888764
No 30
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=95.29 E-value=0.46 Score=47.36 Aligned_cols=154 Identities=9% Similarity=-0.046 Sum_probs=92.3
Q ss_pred chHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeE-EEEecccc
Q psy8699 8 TGFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATA-IAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p-~~~it~~~ 84 (325)
++..+++.+. .+..=+.++..+... .....+.|. +. ++--+-....|++++.+|.|.|.. |.+| ++..|+++
T Consensus 27 ~~~a~~l~~~L~~~GV~~vfg~PG~~---~~~l~~al~-~~-~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGp 101 (616)
T 2pan_A 27 MRAVDAAMYVLEKEGITTAFGVPGAA---INPFYSAMR-KH-GGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGP 101 (616)
T ss_dssp EEHHHHHHHHHHHTTCCEEEECCCGG---GHHHHHHHH-HH-CCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCCc---cHHHHHHHH-hc-CCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCc
Confidence 4678888884 455566666655322 111123333 34 332333457999999999999987 4554 34237888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
....++.-|. ++...+.|. +++.+...... +-+.+|..+...+++.+-.+.. ...++.++..+++.|++
T Consensus 102 G~~N~~~~l~-~A~~~~vPl--------vvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~ 171 (616)
T 2pan_A 102 AGTDMITALY-SASADSIPI--------LCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAV-TVREAALVPRVLQQAFH 171 (616)
T ss_dssp HHHTSHHHHH-HHHHTTCCE--------EEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHhcCCCE--------EEEecCCcccccCcccccccCHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHH
Confidence 7766666665 455333332 22221111111 1233565666788888876644 44667888888888886
Q ss_pred C-----CCcEEEeccccc
Q psy8699 164 D-----KDPCIFFEPKVL 176 (325)
Q Consensus 164 ~-----~~Pv~i~~~~~l 176 (325)
. .+||+|-.|..+
T Consensus 172 ~A~~~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 172 LMRSGRPGPVLVDLPFDV 189 (616)
T ss_dssp HHHSSSCCCEEEEEEHHH
T ss_pred HHhcCCCceEEEEcchhh
Confidence 2 689999888654
No 31
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=95.17 E-value=0.12 Score=51.10 Aligned_cols=161 Identities=12% Similarity=-0.033 Sum_probs=93.9
Q ss_pred CCCCCccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEE
Q psy8699 1 MGDQGYWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIA 78 (325)
Q Consensus 1 ~~~~~~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~ 78 (325)
|+++-+.++..++|.+.+ +.+=+.++..+-.. .....+.+.+ - .=+++.+ ..|++++.+|-|.|.. |...++
T Consensus 1 ~~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~ 74 (564)
T 2q28_A 1 MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIP---VTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGIC 74 (564)
T ss_dssp ----CCEEEHHHHHHHHHHHTTCCEEEECCCTT---THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEE
T ss_pred CCcccccCcHHHHHHHHHHHcCCCEEEECCCcc---hHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEE
Confidence 677766788999999954 55556566554311 1111223322 2 1256655 7999999999999988 544344
Q ss_pred EecccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHH
Q psy8699 79 EIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAK 155 (325)
Q Consensus 79 ~it~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~ 155 (325)
..|+++....++.-+- ++-..+.|. +++.+.... .+. -+.+|..+..++++.+-..... ..+++++.
T Consensus 75 ~~TsGpG~~N~~~gi~-~A~~~~vPl--------l~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~-v~~~~~~~ 144 (564)
T 2q28_A 75 LTVSAPGFLNGLTALA-NATVNGFPM--------IMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFR-VNQPQDLG 144 (564)
T ss_dssp EECSHHHHHHHHHHHH-HHHHHTCCE--------EEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEE-CCSGGGHH
T ss_pred EEccCchHHHHHHHHH-HHHhcCCCE--------EEEeCCCCccccCCCCCccccccHHHHHHHhhheeee-cCCHHHHH
Confidence 4478887766666664 444333332 222211111 121 1456666777899988666443 35566666
Q ss_pred HHHHHhHh-----CCCcEEEecccccc
Q psy8699 156 GLLLSCIK-----DKDPCIFFEPKVLY 177 (325)
Q Consensus 156 ~~~~~a~~-----~~~Pv~i~~~~~l~ 177 (325)
..++.|++ .++||+|-.|..+.
T Consensus 145 ~~i~~A~~~A~~~~~GPV~l~iP~dv~ 171 (564)
T 2q28_A 145 IALARAIRVSVSGRPGGVYLDLPANVL 171 (564)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEcCHHHh
Confidence 66666665 36999999988754
No 32
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.97 E-value=0.47 Score=46.71 Aligned_cols=152 Identities=11% Similarity=-0.042 Sum_probs=91.9
Q ss_pred chHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccccc
Q psy8699 8 TGFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFADY 85 (325)
Q Consensus 8 ~~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F 85 (325)
++..+++.+. .+.+=+.++..+... .....+.|.+ . +=+++.+ ..|++++.+|.|.|.. |...++..|+++.
T Consensus 4 ~~~a~~l~~~L~~~GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG 77 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGVEHLFGLHGAH---IDTIFQACLD-H-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAGGG 77 (563)
T ss_dssp EEHHHHHHHHHHHHTCCCEEECCCGG---GHHHHHHHHH-H-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTTHH
T ss_pred cCHHHHHHHHHHHCCCCEEEECCCCc---hHHHHHHHHh-c-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCcc
Confidence 5678888884 445555555444211 1111233332 2 2356665 7999999999999987 6554555478887
Q ss_pred HHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCC-hhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 86 IFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHS-QSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 86 ~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~-~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
+..++.-+- ++-..+.|. +++.+...... +-+.||. .+..++++.+-.. .+...+++++...++.|++
T Consensus 78 ~~N~~~~l~-~A~~~~~Pl--------l~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~ 147 (563)
T 2uz1_A 78 FTNAVTPIA-NAWLDRTPV--------LFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIR 147 (563)
T ss_dssp HHTTHHHHH-HHHHHTCCE--------EEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhcCCCE--------EEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHH
Confidence 766666664 344333332 22222111111 1234776 7778899988665 4555677777777887776
Q ss_pred ----C-CCcEEEecccc
Q psy8699 164 ----D-KDPCIFFEPKV 175 (325)
Q Consensus 164 ----~-~~Pv~i~~~~~ 175 (325)
. .+||+|-.|..
T Consensus 148 ~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 148 AALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHSSSCCCEEEEEEHH
T ss_pred HhcCCCCceEEEEeCHH
Confidence 2 59999998876
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.85 E-value=0.43 Score=47.34 Aligned_cols=154 Identities=12% Similarity=-0.057 Sum_probs=95.2
Q ss_pred ccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEe
Q psy8699 6 YWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEI 80 (325)
Q Consensus 6 ~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~i 80 (325)
++++..++|.+.+ +.+=+.++..+... ...|.+.+. ++ +++.+ ..|++++.+|.|.|.. |...++..
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~ 81 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGA-------SMEIHQALTRSSSIRNVLP-RHEQGGVFAAEGYARSSGKPGICIA 81 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGG-------GHHHHHHHHHCSSCEECCC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCc-------hHHHHHHHhccCCccEEee-CCHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3467889999855 45556666544211 233333220 22 45544 6999999999999987 65555554
Q ss_pred cccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 81 QFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 81 t~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
|+++....++--+- ++-..+.|. +++.+...... +-+.+|..+..++++.+-.+ .+...+++++..+++
T Consensus 82 TsGpG~~N~~~gv~-~A~~~~vPl--------l~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~ 151 (590)
T 1ybh_A 82 TSGPGATNLVSGLA-DALLDSVPL--------VAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRIIE 151 (590)
T ss_dssp CTTHHHHTTHHHHH-HHHHHTCCE--------EEEEEECCGGGTTTTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHHH
T ss_pred ccCchHHHHHHHHH-HHHhhCCCE--------EEEeCcCCccccCCCcccccCHHHHHHHHhCe-EEecCCHHHHHHHHH
Confidence 78887766665554 344333332 22221111111 12346767778899988776 455677888888888
Q ss_pred HhHhC-----CCcEEEecccccc
Q psy8699 160 SCIKD-----KDPCIFFEPKVLY 177 (325)
Q Consensus 160 ~a~~~-----~~Pv~i~~~~~l~ 177 (325)
.|++. .+||+|-.|..+.
T Consensus 152 ~A~~~a~~~~~GPV~l~iP~dv~ 174 (590)
T 1ybh_A 152 EAFFLATSGRPGPVLVDVPKDIQ 174 (590)
T ss_dssp HHHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHHhhCCCceEEEEeCcchh
Confidence 88862 5899998887653
No 34
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.83 E-value=0.71 Score=45.50 Aligned_cols=152 Identities=8% Similarity=-0.015 Sum_probs=90.2
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHh--CCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKY--GKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~--~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
++..++|.+ +.+.+=+.++..+... ...|.+.+ ..=+++.+ ..|++++.+|.|.|.. |...++..|++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 82 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAK-------IDKVFDSLLDSSIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTSG 82 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTT-------THHHHHHGGGSSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECST
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCc-------hHHHHHHHHhCCCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccC
Confidence 566888888 4455566666554321 23344433 11255555 7999999999999986 65445554788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-CCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-ALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI 162 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~ 162 (325)
+....++.-+. ++-..+.|. +++.+.......| +.||..+..++++.+... .+...+++++...++.|+
T Consensus 83 pG~~N~~~~l~-~A~~~~vPl--------l~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~ 152 (566)
T 1ozh_A 83 PGCSNLITGMA-TANSEGDPV--------VALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVSNAF 152 (566)
T ss_dssp HHHHTTHHHHH-HHHHHTCCE--------EEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHhcCCCE--------EEEeCCCccccCCCCcccccCHHHHHHHHhhe-EEEcCCHHHHHHHHHHHH
Confidence 87766665554 344333332 2222211111112 457777778899988765 445567777777777766
Q ss_pred h----C-CCcEEEecccccc
Q psy8699 163 K----D-KDPCIFFEPKVLY 177 (325)
Q Consensus 163 ~----~-~~Pv~i~~~~~l~ 177 (325)
+ . .+||+|-.|..+.
T Consensus 153 ~~A~~~r~GPV~l~iP~dv~ 172 (566)
T 1ozh_A 153 RAAEQGRPGSAFVSLPQDVV 172 (566)
T ss_dssp HHHHSSSCCEEEEEEEHHHH
T ss_pred HHHhcCCCCeEEEEeChhhh
Confidence 5 2 5999999887654
No 35
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=93.20 E-value=1.3 Score=44.77 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=93.4
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++..++|.+ +.+..=+.++..+. +. ...|.+.+. ++ +++. ...|++++.+|.|.|.. |...++..|+
T Consensus 82 ~~~a~~lv~~L~~~GV~~vFg~PG----~~---~~pl~dal~~~~~i~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~Ts 153 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQNVDTVFGYPG----GA---ILPVYDAIHNSDKFNFVL-PKHEQGAGHMAEGYARASGKPGVVLVTS 153 (677)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCC----GG---GHHHHHHTTTCSSSEEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CCHHHHHHHHHHHcCCCEEEEecC----cc---HHHHHHHHHhCCCCeEEE-eCChHHHHHHHHHHHHHHCCCEEEEECC
Confidence 567888888 44566666665542 11 344555441 22 4554 47999999999999987 6544555488
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
++....++.-|- ++-..+.|. +++.+...... +-+.+|..+..++++.+-.+.. ...+++++...++.|
T Consensus 154 GpG~~N~~~gia-~A~~d~vPl--------lvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~-~v~~~~~i~~~i~~A 223 (677)
T 1t9b_A 154 GPGATNVVTPMA-DAFADGIPM--------VVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNV-MVKSVEELPLRINEA 223 (677)
T ss_dssp THHHHTTHHHHH-HHHHHTCCE--------EEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEE-ECCSGGGHHHHHHHH
T ss_pred ChHHHHHHHHHH-HHHHcCCCE--------EEEeCCCChhhcCCCCccccCHHHHhhhheeEEE-EcCCHHHHHHHHHHH
Confidence 888766666664 344333332 22221111111 1234666777888888766644 446778888888888
Q ss_pred Hh-----CCCcEEEeccccc
Q psy8699 162 IK-----DKDPCIFFEPKVL 176 (325)
Q Consensus 162 ~~-----~~~Pv~i~~~~~l 176 (325)
++ ..+||+|-.|+.+
T Consensus 224 ~~~A~~grpGPV~l~lP~Dv 243 (677)
T 1t9b_A 224 FEIATSGRPGPVLVDLPKDV 243 (677)
T ss_dssp HHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHhhCCCceEEEEcCHHH
Confidence 86 2689999888654
No 36
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=93.07 E-value=0.52 Score=46.44 Aligned_cols=157 Identities=9% Similarity=-0.047 Sum_probs=93.5
Q ss_pred CccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 5 GYWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 5 ~~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
...++..++|.+.+ +.+=+.++..+-.. .....+.+.+ . .=+++.+ ..|++++.+|-|.|.. |...++..|+
T Consensus 7 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~Ts 80 (568)
T 2c31_A 7 VELTDGFHVLIDALKMNDIDTMYGVVGIP---ITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVS 80 (568)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTT---THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEeCCCc---cHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 35578899999844 55566666554311 1111223322 2 2256555 7999999999999988 5544544478
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCc--cCCC-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCM--AVGH-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g--~~g~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
++....++.-+- ++-..+.|. +++.+... ..+. -+.+|..+..++++.+-... +...+++++...++
T Consensus 81 GpG~~N~~~~i~-~A~~~~vPl--------l~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~~i~ 150 (568)
T 2c31_A 81 APGFLNGVTSLA-HATTNCFPM--------ILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKAS-FRINSIKDIPIGIA 150 (568)
T ss_dssp HHHHHHHHHHHH-HHHHHTCCE--------EEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEE-EECCSGGGHHHHHH
T ss_pred CccHHHHHHHHH-HHHhcCCCE--------EEEccCCCccccCCCCCcccccCHHHHHHhhhhee-eecCCHHHHHHHHH
Confidence 888766666664 444333332 22221111 1121 14566667778888876654 34456666666666
Q ss_pred HhHh-----CCCcEEEecccccc
Q psy8699 160 SCIK-----DKDPCIFFEPKVLY 177 (325)
Q Consensus 160 ~a~~-----~~~Pv~i~~~~~l~ 177 (325)
.|++ .++||+|-.|..+.
T Consensus 151 ~A~~~A~~~~~GPV~l~iP~dv~ 173 (568)
T 2c31_A 151 RAVRTAVSGRPGGVYVDLPAKLF 173 (568)
T ss_dssp HHHHHHHSSSCCEEEEEEETHHH
T ss_pred HHHHHhcCCCCceEEEeCCHHHh
Confidence 6665 36899999988754
No 37
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.07 E-value=1 Score=44.18 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=90.0
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.+..+++.+.+ +..=+.++..+--. .....+.|. +. |+ +++.+ ..|++++.+|-|.|.. |...++..|+++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vfg~PG~~---~~~l~dal~-~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGp 76 (549)
T 3eya_A 3 QTVAAYIAKTLESAGVKRIWGVTGDS---LNGLSDSLN-RM-GTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGP 76 (549)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGG---GHHHHHHHH-HH-CSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTH
T ss_pred ccHHHHHHHHHHHCCCCEEEEcCCCc---hHHHHHHHH-hc-CCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 56788888844 55556555544211 111123333 33 33 55554 6999999999999987 544444447888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK 163 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~ 163 (325)
....++.-+- ++-..+.|. +++.+...... +-+.+|..+..++++.+-.+. +...+++++...++.|++
T Consensus 77 G~~N~~~gi~-~A~~~~vPv--------l~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~ 146 (549)
T 3eya_A 77 GNLHLINGLF-DCHRNHVPV--------LAIAAHIPSSEIGSGYFQETHPQELFRECSHYC-ELVSSPEQIPQVLAIAMR 146 (549)
T ss_dssp HHHTTHHHHH-HHHHTTCCE--------EEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEE-EECCSGGGHHHHHHHHHH
T ss_pred cHhhhHHHHH-HHHhhCCCE--------EEEeCCCchhhcCCCCCCccCHHHHHhhhhheE-EEeCCHHHHHHHHHHHHH
Confidence 7766665554 344333332 22221111111 123466667788999886653 444566666666666665
Q ss_pred ----CCCcEEEecccccc
Q psy8699 164 ----DKDPCIFFEPKVLY 177 (325)
Q Consensus 164 ----~~~Pv~i~~~~~l~ 177 (325)
.++||+|-.|..+.
T Consensus 147 ~A~~~~GPV~l~iP~dv~ 164 (549)
T 3eya_A 147 KAVLNRGVSVVVLPGDVA 164 (549)
T ss_dssp HHHHTTSEEEEEEEHHHH
T ss_pred HHhhCCCCEEEEeChhHh
Confidence 58999998887543
No 38
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.99 E-value=1.5 Score=43.13 Aligned_cols=151 Identities=16% Similarity=0.019 Sum_probs=89.2
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++..+++.+ +.+.+=+.++..+... ...|.+.+. ++ +++.+ ..|++++.+|.|.|.. | ..++..|+
T Consensus 3 ~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~i~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 73 (568)
T 2wvg_A 3 YTVGTYLAERLVQIGLKHHFAVAGDY-------NLVLLDNLLLNKNMEQVYC-CNELNCGFSAEGYARAKG-AAAAVVTY 73 (568)
T ss_dssp EEHHHHHHHHHHHTTCSEEEECCCTT-------THHHHHHHHTCTTSEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECT
T ss_pred cCHHHHHHHHHHHcCCCEEEeCCCCc-------cHHHHHHHhccCCceEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeC
Confidence 567888888 4455566666655321 233433321 22 55555 7999999999999966 8 55555488
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCc--cCCCC-CCCCC----h--hHHHHHcCCCCcEEEeeCCHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCM--AVGHG-ALYHS----Q--SPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g--~~g~g-~th~~----~--~d~~~~~~ip~~~v~~P~~~~e 153 (325)
++....++.-+. ++...+.|. +++.+... ..+.+ ..||. + +...+++.+-.. .+.+.++++
T Consensus 74 GpG~~N~~~gia-~A~~~~vPl--------l~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~~ 143 (568)
T 2wvg_A 74 SVGALSAFDAIG-GAYAENLPV--------ILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAA-AEAIYTPEE 143 (568)
T ss_dssp TTTHHHHHHHHH-HHHHTTCCE--------EEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSC-EEEECSGGG
T ss_pred CCCHHHHHHHHH-HHhhhCCCE--------EEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeE-EEEeCCHHH
Confidence 888766666665 344333322 22221111 11222 23553 2 346899988666 344466666
Q ss_pred HHHHHHHhHh----CCCcEEEecccccc
Q psy8699 154 AKGLLLSCIK----DKDPCIFFEPKVLY 177 (325)
Q Consensus 154 ~~~~~~~a~~----~~~Pv~i~~~~~l~ 177 (325)
+...++.|++ .++||+|-.|..+.
T Consensus 144 ~~~~l~~A~~~A~~~~GPV~l~iP~dv~ 171 (568)
T 2wvg_A 144 APAKIDHVIKTALREKKPVYLEIACNIA 171 (568)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEechhHh
Confidence 6666666554 47999999887653
No 39
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=92.86 E-value=1.1 Score=44.21 Aligned_cols=151 Identities=14% Similarity=-0.004 Sum_probs=87.5
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
++..+++.+ +.+.+=+.++..+... ...|.+.+. ++ +++. ...|++++.+|.|.|.. | ..++..|+
T Consensus 3 ~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 73 (566)
T 2vbi_A 3 YTVGMYLAERLVQIGLKHHFAVAGDY-------NLVLLDQLLLNKDMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVTF 73 (566)
T ss_dssp CBHHHHHHHHHHHHTCSEEEECCCTT-------THHHHHHHHTCTTSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECT
T ss_pred cCHHHHHHHHHHHcCCCEEEeCCCCc-------cHHHHHHHhcCCCCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeC
Confidence 567788888 4456666666655322 233443321 12 4555 47999999999999976 8 65555588
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCc--cCCCCC-CCCC----h--hHHHHHcCCCCcEEEeeCCHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCM--AVGHGA-LYHS----Q--SPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g--~~g~g~-th~~----~--~d~~~~~~ip~~~v~~P~~~~e 153 (325)
++....++.-+. ++...+.|. +++.+... ..+.+. .||. + +...+++.+-.. .+.+.++++
T Consensus 74 GpG~~N~~~gia-~A~~~~vPl--------l~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~~ 143 (566)
T 2vbi_A 74 SVGAISAMNALG-GAYAENLPV--------ILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCA-AESITDAHS 143 (566)
T ss_dssp TTTHHHHHHHHH-HHHHTTCCE--------EEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSE-EEEECSSSS
T ss_pred CCCHHHHHHHHH-HHHhhCCCE--------EEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeE-EEEeCCHHH
Confidence 888766666665 344333322 22222111 112222 3453 2 346889888654 334455555
Q ss_pred HHHHHHHhHh----CCCcEEEecccccc
Q psy8699 154 AKGLLLSCIK----DKDPCIFFEPKVLY 177 (325)
Q Consensus 154 ~~~~~~~a~~----~~~Pv~i~~~~~l~ 177 (325)
+...++.|++ .++||+|-.|..+.
T Consensus 144 ~~~~l~~A~~~a~~~~GPV~l~iP~d~~ 171 (566)
T 2vbi_A 144 APAKIDHVIRTALRERKPAYLDIACNIA 171 (566)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEechhhc
Confidence 5555555554 47999999887653
No 40
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.30 E-value=0.52 Score=46.55 Aligned_cols=153 Identities=14% Similarity=-0.036 Sum_probs=93.8
Q ss_pred cchHHHHHHHHH-hcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 7 WTGFFQSSPSQL-LSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 7 ~~~~~~a~~~~~-~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
+++..++|.+.+ +.+=+.++..+-.. .-. ..+.|. + =+++.+ ..|++++.+|-|.|.. |...++..|++
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~---l~~al~---~-i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 82 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASI---LFDEVE---G-IDFVLT-RHEFTAGVAADVLARITGRPQACWATLG 82 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTC---CSCSST---T-CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhH---HHHHHc---C-CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEEccC
Confidence 367889999844 45555555544221 111 123333 2 255554 7999999999999987 54434444788
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccCc--cCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCM--AVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g--~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
+....++.-+. ++...+.|. +++.+... ..+.++.||..+..++++.+..+. +...+++++...++.|
T Consensus 83 pG~~N~~~~v~-~A~~~~~Pl--------l~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A 152 (573)
T 2iht_A 83 PGMTNLSTGIA-TSVLDRSPV--------IALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYA-VELQRPHEITDLVDSA 152 (573)
T ss_dssp HHHHHHHHHHH-HHHHHTCCE--------EEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHH
T ss_pred chHHHHHHHHH-HHHhhCCCE--------EEEcccCcccccCCcCccccCCHHHHHHhHhhEE-EEcCCHHHHHHHHHHH
Confidence 88767766665 454333332 22222111 112214588888889999887664 4456777777777777
Q ss_pred Hh----C-CCcEEEecccccc
Q psy8699 162 IK----D-KDPCIFFEPKVLY 177 (325)
Q Consensus 162 ~~----~-~~Pv~i~~~~~l~ 177 (325)
++ . .+||+|-.|..+.
T Consensus 153 ~~~A~~~~~GPV~l~iP~dv~ 173 (573)
T 2iht_A 153 VNAAMTEPVGPSFISLPVDLL 173 (573)
T ss_dssp HHHHTBSSCCCEEEEEEHHHH
T ss_pred HHHHhcCCCceEEEEecchHh
Confidence 76 2 4899999887654
No 41
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.19 E-value=1 Score=44.78 Aligned_cols=157 Identities=8% Similarity=-0.071 Sum_probs=88.6
Q ss_pred ccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecc
Q psy8699 6 YWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQF 82 (325)
Q Consensus 6 ~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~ 82 (325)
.+++..++|.+.+ +..=+.++..+--. .....+.|.+.- ++ +++.+ ..|++++.+|.|.|.. |...++..|+
T Consensus 9 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~---~~~l~dal~~~~-~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~Ts 83 (603)
T 4feg_A 9 TNILAGAAVIKVLEAWGVDHLYGIPGGS---INSIMDALSAER-DRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSA 83 (603)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGG---GHHHHHHHHHTT-TTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECT
T ss_pred CeeeHHHHHHHHHHHCCCCEEEEeCCCc---hHHHHHHHHhcc-CCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEecC
Confidence 3568889999844 55566666544211 111123343321 12 56554 6999999999999976 6544554478
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCC-CCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVG-HGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC 161 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g-~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a 161 (325)
++....++.-|- ++-..+.|. +++.+...... +-+.+|..+...+++.+-..... ..+++++...++.|
T Consensus 84 GpG~~N~~~gia-~A~~~~vPv--------l~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i~~A 153 (603)
T 4feg_A 84 GPGGTHLMNGLY-DAREDHVPV--------LALIGQFGTTGMNMDTFQEMNENPIYADVADYNVT-AVNAATLPHVIDEA 153 (603)
T ss_dssp THHHHTTHHHHH-HHHHTTCCE--------EEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEE-CCCSTTHHHHHHHH
T ss_pred CchHHHHHHHHH-HHHHcCCCE--------EEEecCCcccccCCCccccccHHHHhhhhceEEEE-cCCHHHHHHHHHHH
Confidence 888766665554 444333332 22221111111 11345555667888887655333 34445555555555
Q ss_pred Hh----CCCcEEEecccccc
Q psy8699 162 IK----DKDPCIFFEPKVLY 177 (325)
Q Consensus 162 ~~----~~~Pv~i~~~~~l~ 177 (325)
++ .++||+|-.|..+.
T Consensus 154 ~~~A~~~~GPV~l~iP~dv~ 173 (603)
T 4feg_A 154 IRRAYAHQGVAVVQIPVDLP 173 (603)
T ss_dssp HHHHHHHTSEEEEEEETTGG
T ss_pred HHHHhcCCCCEEEEeChhhh
Confidence 44 58999998887544
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=92.04 E-value=2.6 Score=41.40 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=86.8
Q ss_pred ccchHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeEEEEeccc
Q psy8699 6 YWTGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFA 83 (325)
Q Consensus 6 ~~~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~ 83 (325)
.+++..++|.+.+ +..=+.++..+... .....+.|. +. +...+-....|++++.+|.|.|.. |...++..|++
T Consensus 19 ~~~~~a~~lv~~L~~~GV~~vfg~PG~~---~~~l~~al~-~~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsG 93 (565)
T 2nxw_A 19 SHMKLAEALLRALKDRGAQAMFGIPGDF---ALPFFKVAE-ET-QILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYG 93 (565)
T ss_dssp CCCBHHHHHHHHHHHTTCCCEEECCCGG---GHHHHHHHH-HH-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred CCcCHHHHHHHHHHHcCCCEEEECCCcc---hHHHHHHHH-hC-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 4568889999854 44455555444211 111123333 23 343444568999999999999987 64445554778
Q ss_pred ccHHHHHHHHHHHHhhcccccCCceeccceEEeccC--ccCCCCC-C-CCCh--h-HHHHHcCCCCcEEEeeCCHHHHHH
Q psy8699 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC--MAVGHGA-L-YHSQ--S-PEAYFAHTPGIKVVIPRGPYKAKG 156 (325)
Q Consensus 84 ~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~--g~~g~g~-t-h~~~--~-d~~~~~~ip~~~v~~P~~~~e~~~ 156 (325)
+....++.-+. ++...+.|. +++.+.. ...+.+. . |+.| + ...+++.+-.+.. ...+++++..
T Consensus 94 pG~~N~~~gv~-~A~~~~vPl--------l~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~-~v~~~~~~~~ 163 (565)
T 2nxw_A 94 AGAFNMVNAVA-GAYAEKSPV--------VVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQA-RLDDPAKAPA 163 (565)
T ss_dssp HHHHTTHHHHH-HHHHTTCCE--------EEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEE-ECCCTTTHHH
T ss_pred CCHHHHHHHHH-HHHhhCCCE--------EEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEE-EeCCHHHHHH
Confidence 87766665554 444333332 2222211 1122232 2 3333 2 4678888765533 3345555555
Q ss_pred HHHHhHh----CCCcEEEecccccccc
Q psy8699 157 LLLSCIK----DKDPCIFFEPKVLYRA 179 (325)
Q Consensus 157 ~~~~a~~----~~~Pv~i~~~~~l~~~ 179 (325)
.++.|++ .++||+|-.|+.+.+.
T Consensus 164 ~i~~A~~~A~~~~GPV~l~iP~Dv~~~ 190 (565)
T 2nxw_A 164 EIARVLGAARAQSRPVYLEIPRNMVNA 190 (565)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEGGGTTC
T ss_pred HHHHHHHHHHhCCCCEEEECChhhhcC
Confidence 5555554 4799999998766543
No 43
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.03 E-value=0.82 Score=45.30 Aligned_cols=151 Identities=13% Similarity=-0.045 Sum_probs=90.6
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhC---CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEec
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYG---KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQ 81 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~---p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it 81 (325)
++..++|.+.+ +.+=+.++..+-.. ...|.+.+. ++ +++.+ ..|++++.+|-|.|.. |...++..|
T Consensus 4 ~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~~i~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~T 75 (589)
T 2pgn_A 4 KRGADLIVEALEEYGTEQVVGFIGHT-------SHFVADAFSKSHLGKRVINP-ATELGGAWMVNGYNYVKDRSAAVGAW 75 (589)
T ss_dssp EEHHHHHHHHHHHTTCCEEEEECSGG-------GHHHHHHHHTSTTSTTCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CcHHHHHHHHHHHcCCCEEEEecCCc-------hHHHHHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 56788888844 55556555544211 233443331 11 45554 7999999999999987 543344447
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCC-C-CCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHG-A-LYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLL 159 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g-~-th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~ 159 (325)
+++....++.-+. ++-..+.|. +++.+.......| + .||..+..+ ++.+..+. +...+++++...++
T Consensus 76 sGpG~~N~~~gv~-~A~~~~vPl--------l~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~-~~v~~~~~~~~~i~ 144 (589)
T 2pgn_A 76 HCVGNLLLHAAMQ-EARTGRIPA--------VHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARST-QRVERLDKVGEAIH 144 (589)
T ss_dssp EGGGGGGCHHHHH-HHHHTTCCE--------EEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEE-EECCSGGGHHHHHH
T ss_pred cCchHHHHHHHHH-HHHhcCCCE--------EEEecCCcccccCCCCcccccChhh-ccccEEEE-eecCCHHHHHHHHH
Confidence 8888766665564 444333332 2222211111112 3 578777778 88886653 44567777777777
Q ss_pred HhHh----C-CCcEEEecccccc
Q psy8699 160 SCIK----D-KDPCIFFEPKVLY 177 (325)
Q Consensus 160 ~a~~----~-~~Pv~i~~~~~l~ 177 (325)
.|++ . .+||+|-.|..+.
T Consensus 145 ~A~~~A~~~~~GPV~l~iP~dv~ 167 (589)
T 2pgn_A 145 EAFRVAEGHPAGPAYVDIPFDLT 167 (589)
T ss_dssp HHHHHHTSSSCCEEEEEEETHHH
T ss_pred HHHHHHhcCCCccEEEEeCHhhh
Confidence 7775 2 4899999987653
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.61 E-value=1.5 Score=42.95 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=90.0
Q ss_pred chHHHHHHHHH-hcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQL-LSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~~-~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.+..++|.+.+ +..=+.++..+--. .....+.+. +. ++ +++- -..|++++-+|-|.|.. |...++..|+++
T Consensus 8 ~~~a~~lv~~L~~~GV~~vFg~PG~~---~~~l~dal~-~~-~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGp 81 (556)
T 3hww_A 8 RRWAAVILEALTRHGVRHICIAPGSR---STLLTLAAA-EN-SAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGT 81 (556)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECCCTT---SHHHHHHHH-HC-TTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred hHHHHHHHHHHHHCCCCEEEEcCCCC---cHHHHHHHh-hC-CCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCc
Confidence 56778888854 45555555444211 111123333 23 33 5555 46999999999999976 654555548888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEec--cCccCCCCCCCCChhHHHHHcCCCCcEEEe--eCC---HHHHHHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA--PCMAVGHGALYHSQSPEAYFAHTPGIKVVI--PRG---PYKAKGL 157 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~--~~g~~g~g~th~~~~d~~~~~~ip~~~v~~--P~~---~~e~~~~ 157 (325)
....++--|- ++-..+.|. +++.+ +....+. +.||..+..++++.+-...... |.+ ++++..+
T Consensus 82 G~~N~~~gia-~A~~d~vPl--------l~itG~~~~~~~g~-~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~ 151 (556)
T 3hww_A 82 AVANLYPALI-EAGLTGEKL--------ILLTADRPPELIDC-GANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVST 151 (556)
T ss_dssp HHHTTHHHHH-HHHHHCCCE--------EEEEEECCGGGSSS-SCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHH
T ss_pred HHHhhhHHHH-HHHHhCCCe--------EEEeCCCCHHHhcc-CCCccccHHHHHhhheeEEEecCCCcccccHHHHHHH
Confidence 8766665554 444333332 22221 1111122 3477777778888876654443 332 4568889
Q ss_pred HHHhHhC--CCcEEEecccc
Q psy8699 158 LLSCIKD--KDPCIFFEPKV 175 (325)
Q Consensus 158 ~~~a~~~--~~Pv~i~~~~~ 175 (325)
++.|+.. ++||+|-.|+.
T Consensus 152 i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 152 IDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp HHHHHHSCCSSCEEEEEECC
T ss_pred HHHHHhcCCCCCEEEeCCcC
Confidence 9999874 68999988864
No 45
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.02 E-value=3.1 Score=41.23 Aligned_cols=153 Identities=14% Similarity=0.008 Sum_probs=84.8
Q ss_pred chHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
.+..++|.+ +.+.+=+.++..+-.. .....+.+. +. ++ +++.+ ..|++++.+|-|.|.. |...++..|+++
T Consensus 31 ~~~a~~lv~~L~~~GV~~vFg~PG~~---~~~l~dal~-~~-~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGp 104 (604)
T 2x7j_A 31 THYIGSFIDEFALSGITDAVVCPGSR---STPLAVLCA-AH-PDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGT 104 (604)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCST---THHHHHHHH-HC-TTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSH
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCcc---cHHHHHHHH-hC-CCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChh
Confidence 456788887 4456666666555221 111123332 22 22 56655 7999999999999987 544455547888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEeccC--ccCCCCCCCCChhHHHHHcCCCCcEEE--eeCC--------HH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC--MAVGHGALYHSQSPEAYFAHTPGIKVV--IPRG--------PY 152 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~--g~~g~g~th~~~~d~~~~~~ip~~~v~--~P~~--------~~ 152 (325)
....++.-+- ++-..+.|. +++.+.. ...+. +.+|..+..++++.+-.+... .|.+ +.
T Consensus 105 G~~N~~~gia-~A~~~~vPl--------v~ItG~~~~~~~g~-~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~ 174 (604)
T 2x7j_A 105 AAANFYPAVV-EAHYSRVPI--------IVLTADRPHELREV-GAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRT 174 (604)
T ss_dssp HHHTTHHHHH-HHHHHTCCE--------EEEEEECCGGGSSS-CCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhhcCCCE--------EEEeCCCCHHHhCC-CCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHH
Confidence 7766655554 444333332 2222111 11121 346666666778776554333 3443 23
Q ss_pred HHHHHHHHhHh-CCCcEEEeccccc
Q psy8699 153 KAKGLLLSCIK-DKDPCIFFEPKVL 176 (325)
Q Consensus 153 e~~~~~~~a~~-~~~Pv~i~~~~~l 176 (325)
.+.++++.|.. .++||+|-.|...
T Consensus 175 ~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 175 LASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred HHHHHHHHhhCCCCCcEEEEcccCc
Confidence 34444444444 4799999988764
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=87.66 E-value=8.6 Score=37.54 Aligned_cols=152 Identities=13% Similarity=-0.054 Sum_probs=86.0
Q ss_pred cchHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEec
Q psy8699 7 WTGFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQ 81 (325)
Q Consensus 7 ~~~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it 81 (325)
+++..+++.+. .+.+=+.++..+... ...|.+.+. ++ +++. ...|++++.+|.|.|.. | .+++..|
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~T 73 (563)
T 2vk8_A 3 EITLGKYLFERLKQVNVNTVFGLPGDF-------NLSLLDKIYEVEGMRWAG-NANELNAAYAADGYARIKG-MSCIITT 73 (563)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGG-------GHHHHHGGGGSTTCEECC-CSSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred ccCHHHHHHHHHHHcCCCEEEEcCCcc-------hHHHHHHHhhcCCceEEc-cCchHHHHHHHHHHHHhhC-CcEEEEc
Confidence 46778888884 455566666554211 234444331 22 4544 47999999999999976 7 5555547
Q ss_pred ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCC-CCCCCC------hhHHHHHcCCCCcEEEeeCCHH
Q psy8699 82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGH-GALYHS------QSPEAYFAHTPGIKVVIPRGPY 152 (325)
Q Consensus 82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~-g~th~~------~~d~~~~~~ip~~~v~~P~~~~ 152 (325)
+++....++.-+- ++-..+.|. +++.+.... .+. -..||. |+...+++.+-.... ...+++
T Consensus 74 sGpG~~N~~~gia-~A~~~~~Pl--------l~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~-~v~~~~ 143 (563)
T 2vk8_A 74 FGVGELSALNGIA-GSYAEHVGV--------LHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTA-MITDIA 143 (563)
T ss_dssp TTHHHHHHHHHHH-HHHHHTCCE--------EEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEE-ECCCTT
T ss_pred CCCcHHHHHHHHH-HHHhhCCCE--------EEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEE-EeCCHH
Confidence 8887766665664 344333332 222211111 111 122332 234678888765533 344544
Q ss_pred H----HHHHHHHhHhCCCcEEEecccccc
Q psy8699 153 K----AKGLLLSCIKDKDPCIFFEPKVLY 177 (325)
Q Consensus 153 e----~~~~~~~a~~~~~Pv~i~~~~~l~ 177 (325)
+ +.++++.|...++||+|-.|..+.
T Consensus 144 ~~~~~i~~A~~~A~~~~GPV~l~iP~d~~ 172 (563)
T 2vk8_A 144 TAPAEIDRCIRTTYVTQRPVYLGLPANLV 172 (563)
T ss_dssp THHHHHHHHHHHHHHHTSCEEEEEETTGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhhh
Confidence 4 445555555447999999988664
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=86.32 E-value=5.7 Score=38.90 Aligned_cols=149 Identities=9% Similarity=-0.022 Sum_probs=84.5
Q ss_pred chHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHhC--CC-ceeechhhHHHHHHHHHHHhc-cCCeEEEEecc
Q psy8699 8 TGFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYG--KH-RVFNTPLSEQGIVGFGIGLAV-SGATAIAEIQF 82 (325)
Q Consensus 8 ~~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~--p~-r~~~~gIaE~~~v~~a~GlA~-~G~~p~~~it~ 82 (325)
++..++|.+. .+.+=+.++..+... ...|.+.+. ++ +++ ....|++++.+|.|.|. +| ..++..|+
T Consensus 25 ~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~GyAr~tG-~~v~~~ts 95 (570)
T 2vbf_A 25 YTVGDYLLDRLHELGIEEIFGVPGDY-------NLQFLDQIISREDMKWI-GNANELNASYMADGYARTKK-AAAFLTTF 95 (570)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGG-------GHHHHHHHHHCSSCEEE-ECSSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCcc-------hHHHHHHHhcCCCCeEE-CcCcHHHHHHHHHHHHHHhC-CeEEEEcC
Confidence 5678899884 455566666555321 233333220 23 344 45799999999999995 48 55555477
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CCCC-CCCCCh------hHHHHHcCCCCcEEEeeCCHHH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VGHG-ALYHSQ------SPEAYFAHTPGIKVVIPRGPYK 153 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g~g-~th~~~------~d~~~~~~ip~~~v~~P~~~~e 153 (325)
.+....++.-+. ++-..+.|. +++.+.... .+.+ ..||.. +...+++.+.......+ + ++
T Consensus 96 GpG~~N~~~gi~-~A~~~~vPl--------v~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~~ 164 (570)
T 2vbf_A 96 GVGELSAINGLA-GSYAENLPV--------VEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-EN 164 (570)
T ss_dssp THHHHHHHHHHH-HHHHTTCCE--------EEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-TT
T ss_pred CCCHHHHHHHHH-HHhhhCCCE--------EEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-cc
Confidence 777766666664 344333322 222211111 1112 235422 23577888766554443 4 56
Q ss_pred HHHHHHHhHh----CCCcEEEeccccc
Q psy8699 154 AKGLLLSCIK----DKDPCIFFEPKVL 176 (325)
Q Consensus 154 ~~~~~~~a~~----~~~Pv~i~~~~~l 176 (325)
+...++.|++ .++||+|-.|..+
T Consensus 165 ~~~~l~~A~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 165 ATYEIDRVLSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_pred HHHHHHHHHHHHhhCCCCEEEEcchhh
Confidence 5556665554 4799999888754
No 48
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=85.54 E-value=4.8 Score=39.56 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=83.6
Q ss_pred chHHHHHHHH-HhcCCCEEEEcCcCCCCcccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhcc-CCeEEEEecccc
Q psy8699 8 TGFFQSSPSQ-LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH-RVFNTPLSEQGIVGFGIGLAVS-GATAIAEIQFAD 84 (325)
Q Consensus 8 ~~~~~a~~~~-~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~-r~~~~gIaE~~~v~~a~GlA~~-G~~p~~~it~~~ 84 (325)
++..++|.+. .+..=+.++..+--. .....+.|. +. ++ +++.+ ..|++++-+|-|.|.. |...++..|+++
T Consensus 11 ~~~a~~lv~~L~~~GV~~vFg~PG~~---~~~l~dal~-~~-~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGp 84 (578)
T 3lq1_A 11 TDYLAAFIEELVQAGVKEAIISPGSR---STPLALMMA-EH-PILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGT 84 (578)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCTT---THHHHHHHH-HC-SSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCc---cHHHHHHHH-hC-CCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCch
Confidence 3577888874 455566666544211 111122333 23 23 55555 6999999999999977 654455547888
Q ss_pred cHHHHHHHHHHHHhhcccccCCceeccceEEec--cCccCCCCCCCCChhHHHHHcCCCCcE--EEeeCCHHH----HHH
Q psy8699 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA--PCMAVGHGALYHSQSPEAYFAHTPGIK--VVIPRGPYK----AKG 156 (325)
Q Consensus 85 F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~--~~g~~g~g~th~~~~d~~~~~~ip~~~--v~~P~~~~e----~~~ 156 (325)
....++--|- ++-..+.|. +++.+ +....+. +.+|..+...+++.+-.+. |-.|.+..+ +..
T Consensus 85 G~~N~~~gia-~A~~d~vPl--------l~itG~~p~~~~g~-~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~ 154 (578)
T 3lq1_A 85 AAANYFPAVA-EANLSQIPL--------IVLTADRPHELRNV-GAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKW 154 (578)
T ss_dssp HHHTTHHHHH-HHHHTTCCE--------EEEEEECCGGGTTS-SCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHH
T ss_pred hhhhhhHHHH-HHHhcCCCe--------EEEeCCCCHHhhcC-CCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHH
Confidence 8766655554 444333322 22221 1111111 3466666667788765443 334555332 223
Q ss_pred HHHHhHh-----CCCcEEEecccc
Q psy8699 157 LLLSCIK-----DKDPCIFFEPKV 175 (325)
Q Consensus 157 ~~~~a~~-----~~~Pv~i~~~~~ 175 (325)
.++.|++ .++||+|-.|..
T Consensus 155 ~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 155 HGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp HHHHHHHHHHSSSCCCEEEEEECC
T ss_pred HHHHHHHHhhCCCCCcEEEECccC
Confidence 4444444 379999988864
No 49
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=83.55 E-value=2.5 Score=31.05 Aligned_cols=74 Identities=8% Similarity=0.037 Sum_probs=50.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCCh-HHHHHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGF-GAELAA 276 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~ggl-g~~v~~ 276 (325)
++++|.+. +....|.+|.+.|+++ |+....+++.. |.+......+. +=.+|++.+.....|+ ..++.+
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~-gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~ 77 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTAN-RIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKA 77 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHT-TCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhc-CCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHH
Confidence 46777776 6778899999999998 99999999875 44443333322 2267888665454554 457777
Q ss_pred HHHhhc
Q psy8699 277 SIQDKC 282 (325)
Q Consensus 277 ~l~e~~ 282 (325)
.|.+.+
T Consensus 78 ~L~el~ 83 (92)
T 2lqo_A 78 KLVKIA 83 (92)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777653
No 50
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=82.82 E-value=2.6 Score=42.58 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=64.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccC-ccC-
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC-MAV- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~-g~~- 122 (325)
|.+|+..|. +=-..+..|+|++++ .-++++++ .++.. +..+..|. .+...+++.. . +++-..+ |..
T Consensus 503 p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i-~GDGsf~~~~~eL~-ta~~~~l~v~---i---vV~NN~~~g~~~ 574 (677)
T 1t9b_A 503 PHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDI-DGDASFNMTLTELS-SAVQAGTPVK---I---LILNNEEQGMVT 574 (677)
T ss_dssp TTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEE-EEHHHHHHHGGGHH-HHHHHTCCCE---E---EEEECSSCHHHH
T ss_pred CCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEE-EeehHHhccHHHHH-HHHHhCCCeE---E---EEEeCCCchhhh
Confidence 667887654 111267788888866 34566664 67742 33444453 4555555432 1 1222111 100
Q ss_pred -------CC--CCCC-CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 -------GH--GALY-HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 -------g~--g~th-~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+. -+++ +..+...+...+ |+..+...+.+|+..+++++++.++|++|
T Consensus 575 ~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 631 (677)
T 1t9b_A 575 QWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRVKKQEELDAKLKEFVSTKGPVLL 631 (677)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHCSSCEEE
T ss_pred hhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 00 1122 222233445555 77777889999999999999999999998
No 51
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=81.48 E-value=10 Score=36.78 Aligned_cols=154 Identities=11% Similarity=-0.027 Sum_probs=84.4
Q ss_pred cchHHHHHHH-HHhcCCCEEEEcCcCCCCcccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecc
Q psy8699 7 WTGFFQSSPS-QLLSSQGGVLFGEDVGFGGVFRCSLGLQE---KYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQF 82 (325)
Q Consensus 7 ~~~~~~a~~~-~~~~~~~vv~~~~D~~~~g~~~~~~~~~~---~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~ 82 (325)
.++..++|.+ +.+.+=+.++..+... ...|.+ +. ++--+-....|++++.+|.|.|.....+++..|+
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~-------~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~ts 75 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDY-------NLQFLDHVIDS-PDICWVGCANELNASYAADGYARCKGFAALLTTF 75 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGG-------GHHHHHHHHHC-SSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChh-------HHHHHHHHhcC-CCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEcc
Confidence 3677889988 4456666666555321 233333 23 3323334579999999999999773355555477
Q ss_pred cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CC-CCCCCCC------hhHHHHHcCCCCcEEEeeC--CH
Q psy8699 83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VG-HGALYHS------QSPEAYFAHTPGIKVVIPR--GP 151 (325)
Q Consensus 83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g-~g~th~~------~~d~~~~~~ip~~~v~~P~--~~ 151 (325)
++....++--+. ++...+.|. +++.+.... .+ +-..||. |+...+++.+-......+. -+
T Consensus 76 GpG~~N~~~gv~-~A~~~~~Pl--------l~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~ 146 (552)
T 1ovm_A 76 GVGELSAMNGIA-GSYAEHVPV--------LHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNAC 146 (552)
T ss_dssp THHHHHTHHHHH-HHHHTTCCE--------EEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHH
T ss_pred CCcHHHHHHHHH-HHhhhcCCE--------EEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHH
Confidence 787666665554 344333332 222211110 11 1122332 2345678877666555543 02
Q ss_pred HHHHHHHHHhHhCCCcEEEecccccc
Q psy8699 152 YKAKGLLLSCIKDKDPCIFFEPKVLY 177 (325)
Q Consensus 152 ~e~~~~~~~a~~~~~Pv~i~~~~~l~ 177 (325)
..+.++++.|...++||+|-.|..+.
T Consensus 147 ~~i~~A~~~a~~~~GPV~l~iP~d~~ 172 (552)
T 1ovm_A 147 YEIDRVLTTMLRERRPGYLMLPADVA 172 (552)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeehhhc
Confidence 33444444444446999999887653
No 52
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=74.13 E-value=5.8 Score=28.04 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=43.0
Q ss_pred EEEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccccC-CCHH---HHHHHHhcc------CcEEEEecCCcCCCh
Q psy8699 205 VTLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSILP-WDRE---TVFQSARKT------GRVIIAHEAPLTSGF 270 (325)
Q Consensus 205 v~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P-~d~~---~l~~~~~~~------~~vivvEe~~~~ggl 270 (325)
++|.+. + ....|.+|.+.|++. |++.+.+++..... -+.+ .+.+..... =..|+++++...||+
T Consensus 2 v~iY~~-~~~~~~Cp~C~~ak~~L~~~-gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~ 79 (87)
T 1aba_A 2 FKVYGY-DSNIHKCGPCDNAKRLLTVK-KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF 79 (87)
T ss_dssp EEEEEC-CTTTSCCHHHHHHHHHHHHT-TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred EEEEEe-CCCCCcCccHHHHHHHHHHc-CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCH
Confidence 455554 4 667899999999998 99999999975421 2333 343333222 257788444467887
Q ss_pred HHH
Q psy8699 271 GAE 273 (325)
Q Consensus 271 g~~ 273 (325)
...
T Consensus 80 d~l 82 (87)
T 1aba_A 80 DQL 82 (87)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 53
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=72.63 E-value=26 Score=27.73 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH--HHHHHHHhc----cCcEEEEecCCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR--ETVFQSARK----TGRVIIAHEAPLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~--~~l~~~~~~----~~~vivvEe~~~~gglg~~v~~~ 277 (325)
.++|++.|......+++++.+--+ .-.+..+++..=...+. +.+.+.+++ .+.|+++=+ ..||--..++..
T Consensus 5 giii~sHG~~A~gl~~~~~~i~G~-~~~v~av~~~~~~~~~~~~~~i~~~i~~~~~~~~gvliLtD--l~GGSp~n~a~~ 81 (144)
T 3lfh_A 5 FVLIITHGDFGKGLLSGAEVIIGK-QENVHTVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVD--LFGGSPFNIALS 81 (144)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCC-CSSEEEEEECTTCCHHHHHHHHHHHHHHHHTTTCEEEEEES--SSSSHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCC-CCcEEEEEccCCCCHHHHHHHHHHHHHHhhCCCCcEEEEEe--CCCCCHHHHHHH
Confidence 588999999888899999987533 23677777754322211 334555543 356777755 347765666655
Q ss_pred HHhhccccCCCCeEEEcccCCCCc-ccc-cccCCCCHHHHHHHHHH
Q psy8699 278 IQDKCFLSLEAPIRRVTGYDTPFP-HIF-EPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 278 l~e~~~~~~~~~v~~~~g~~~~~~-~~~-~~~~l~~~~~I~~~i~~ 321 (325)
+.+. .++.-++|.+-|.- ++. ..... +.+.+++.+.+
T Consensus 82 l~~~------~~v~vItGvNLpMlle~~~~r~~~-~l~el~~~~~~ 120 (144)
T 3lfh_A 82 MMKE------YDVKVITGINMPMLVELLTSINVY-DTTELLENISK 120 (144)
T ss_dssp HHHH------HCCEEEESCCHHHHHHHHHSTTTS-CHHHHHHHHHH
T ss_pred HhcC------CCEEEEeCCCHHHHHHHHHhccCC-CHHHHHHHHHH
Confidence 5432 24555677764421 222 23344 77777666554
No 54
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=72.21 E-value=24 Score=30.14 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 215 HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 215 ~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
..+..+++.+++. |.+++++++.. ++|.+...+.++..+.||+.=-- ..+++.+.+-.++..
T Consensus 47 ~L~~~~~~~l~~~-g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~-y~~~~p~~lK~~iD~ 108 (218)
T 3rpe_A 47 TLTNVAADFLRES-GHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPA-WWMGEPWILKKYIDE 108 (218)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEEC-BTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECCh-HhccCCHHHHHHHHH
Confidence 3455566778877 99999999975 78888888888899988877665 567877777776643
No 55
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=71.86 E-value=4.9 Score=30.08 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcCCChHHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~gglg~~ 273 (325)
..+++|++.+ .....|.+|.+.|++. |+....+++..-.+. .+.+.+... .+=..|++... ..||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-gi~~~~~dI~~~~~~-~~~l~~~~g~~tvP~ifi~g~-~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNL-NVPFEDVNILENEML-RQGLKEYSNWPTFPQLYIGGE-FFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGGCHHH-HHHHHHHHTCSSSCEEEETTE-EEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHc-CCCcEEEECCCCHHH-HHHHHHHHCCCCCCeEEECCE-EEeCHHHH
Confidence 4579999988 3788999999999998 999999998752111 122333222 22356888765 45887653
No 56
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=71.68 E-value=15 Score=31.98 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccccCCC---------HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSILPWD---------RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d---------~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
...+..+++.+++. |++++++++..+ |+. .+.+.+.+...+.+|++=-- +++++...+..++..
T Consensus 51 ~~La~~~~~~l~~~-g~eve~idL~~~-pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~-Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 51 RLLAEEARRLLEFF-GAEVKVFDPSGL-PLPDAAPVSHPKVQELRELSIWSEGQVWVSPE-RHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHHT-TCEEEECCCTTC-CCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC-SSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC-CCEEEEEEhhcC-CCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC-CCCCccHHHHHHHHH
Confidence 34555567778777 999999999875 322 45567778888888877665 578888888877753
No 57
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=68.81 E-value=12 Score=36.36 Aligned_cols=101 Identities=9% Similarity=0.082 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC----------CCCC
Q psy8699 61 GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG----------HGAL 127 (325)
Q Consensus 61 ~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g----------~g~t 127 (325)
..++.|.|++++. -++++++ .++.. +..+..|. .+...+++.. . +++-.. .|... .+.+
T Consensus 410 ~~l~~AiGaala~~~~~vv~i-~GDGs~~~~~~~L~-ta~~~~l~~~---i---vv~nN~~~g~~~~~~~~~~~~~~~~~ 481 (549)
T 3eya_A 410 NAMPQALGAQATEPERQVVAM-CGDGGFSMLMGDFL-SVVQMKLPVK---I---VVFNNSVLGFVAMEMKAGGYLTDGTE 481 (549)
T ss_dssp CHHHHHHHHHHHSTTSCEEEE-EEHHHHHHTGGGHH-HHHHTTCCCE---E---EEEECSBCCCC------------CCB
T ss_pred hHHHHHHHHHHhCCCCcEEEE-EccchhhccHHHHH-HHHHhCCCeE---E---EEEeCCccHHHHHHHHhcCCCCcCCc
Confidence 4677888888774 5666664 67743 33344453 4555555432 1 111111 11110 0111
Q ss_pred CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 128 YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 128 h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
.+..+...+.+.+ |+..+...+.+|+...++++++.++|++|
T Consensus 482 ~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 523 (549)
T 3eya_A 482 LHDTNFARIAEAC-GITGIRVEKASEVDEALQRAFSIDGPVLV 523 (549)
T ss_dssp CCCCCHHHHHHHT-TSEEEEECSGGGHHHHHHHHHHSSSCEEE
T ss_pred CCCCCHHHHHHHc-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1112222344444 67777889999999999999999999998
No 58
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=68.53 E-value=13 Score=30.68 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHH-HHhhcCCcEEEEecccccC--------C--CHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 211 GTQVHVLREVAGL-AKEQLGVSCEVIDLVSILP--------W--DRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 211 G~~~~~a~~A~~~-L~~~~gi~~~vi~~~~l~P--------~--d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
|.+...+..+++. |++. |.+++++++..+.. . +.+.+.+.+..++.+|+.=-- +.+++...+..++.
T Consensus 16 g~t~~la~~i~~~~l~~~-g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~-y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARS-DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI-YKASYTGLLKAFLD 93 (197)
T ss_dssp CHHHHHHHHHHHHHHHHS-SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC-BTTBCCHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHC-CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc-cCCCCCHHHHHHHH
Confidence 3455566666777 8887 99999999876521 1 234455667778877777555 46888877777664
No 59
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=66.52 E-value=38 Score=26.21 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=64.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC--HHHHHHHHhcc---CcEEEEecCCcCCChHHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD--RETVFQSARKT---GRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d--~~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~l 278 (325)
.++|++.|......+++++.+--+ .-++..+++..=...+ .+.+.+.+++. +.|+++=+= .||--..++..+
T Consensus 3 ~iii~sHG~~A~gl~~~~~~i~G~-~~~v~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl--~GGSp~n~a~~~ 79 (135)
T 1pdo_A 3 AIVIGTHGWAAEQLLKTAEMLLGE-QENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDT--WGGSPFNAASRI 79 (135)
T ss_dssp EEEEECSBTHHHHHHHHHHHHHCC-CSSEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESS--TTSHHHHHHHHH
T ss_pred eEEEEeChHHHHHHHHHHHHHcCC-cCCEEEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEEC--CCCCHHHHHHHH
Confidence 478999999888899999987432 2467777776433222 24466666654 357776553 366545555544
Q ss_pred HhhccccCCCCeEEEcccCCCC-cccc-ccc-CCCCHHHHHHHHHH
Q psy8699 279 QDKCFLSLEAPIRRVTGYDTPF-PHIF-EPF-YIPDKWRCLEAVKQ 321 (325)
Q Consensus 279 ~e~~~~~~~~~v~~~~g~~~~~-~~~~-~~~-~l~~~~~I~~~i~~ 321 (325)
.+. ..++.-++|.+-|. -+.. ... +. +.+.+++.+.+
T Consensus 80 ~~~-----~~~v~vi~GvNlpmlle~~~~~~~~~-~l~el~~~~~~ 119 (135)
T 1pdo_A 80 VVD-----KEHYEVIAGVNIPMLVETLMARDDDP-SFDELVALAVE 119 (135)
T ss_dssp HTT-----CTTEEEEESCCHHHHHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred Hhc-----cCCEEEEeCCCHHHHHHHHHhcccCC-CHHHHHHHHHH
Confidence 432 13576677877542 1322 122 44 76777666554
No 60
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=66.00 E-value=6.4 Score=31.00 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=45.8
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHH
Q psy8699 203 TDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 203 ~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~ 272 (325)
.+++|+++| .....|.+|.+.|++. |++...+++..- |--.+.+.+.... +=.+|+++.. ..||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-gv~y~~vdI~~d-~~~~~~L~~~~G~~tvP~VfI~G~-~iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAAC-GERFAYVDILQN-PDIRAELPKYANWPTFPQLWVDGE-LVGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTT-CSCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTE-EEESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHc-CCceEEEECCCC-HHHHHHHHHHHCCCCcCEEEECCE-EEEChHH
Confidence 468888888 7788999999999998 999999999762 2111223332221 2257888765 4688743
No 61
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=64.96 E-value=8.4 Score=29.00 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=46.2
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcCCChHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~gglg~ 272 (325)
..+++|++-| +....|.+|.+.|++. |++...+++..- |--.+.+.+... .+=..|+++.. ..||+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-gi~y~~~di~~d-~~~~~~l~~~~g~~tvP~ifi~g~-~iGG~d~ 87 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKH-NIQFSSFDIFSD-EEVRQGLKAYSSWPTYPQLYVSGE-LIGGLDI 87 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTE-EEECHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHc-CCCeEEEECcCC-HHHHHHHHHHHCCCCCCEEEECCE-EEecHHH
Confidence 4578888876 6778999999999998 999999998761 111122322222 23357888776 4688754
No 62
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=64.77 E-value=16 Score=35.56 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=62.5
Q ss_pred CCceeechh--hHHHHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CCC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VGH 124 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g~ 124 (325)
|.++++.|. .=-..++.|.|++++.-++++++ .++.. +..+..|. .+...+++.. +++..-.+. ...
T Consensus 416 p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i-~GDGsf~~~~~el~-ta~~~~l~~~-------ivv~NN~~~~~~~ 486 (568)
T 2c31_A 416 PRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAV-EGDSAFGFSGMELE-TICRYNLPVT-------VIIMNNGGIYKGN 486 (568)
T ss_dssp TTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEE-EEHHHHHTTGGGHH-HHHHTTCCEE-------EEEEESSBSSCSC
T ss_pred CCeEEcCCCCccccccHHHHHHHHhCCCCcEEEE-EcchHhhccHHHHH-HHHHhCCCeE-------EEEEeCchhHHHH
Confidence 667766543 11235777888887655666664 66642 33333443 4555555432 122222221 111
Q ss_pred C-----C----C-CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 125 G-----A----L-YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 125 g-----~----t-h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. . + .+..+...+...+ |+..+...+.+|+..+++++++.++|++|
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 541 (568)
T 2c31_A 487 EADPQPGVISCTRLTRGRYDMMMEAF-GGKGYVANTPAELKAALEEAVASGKPCLI 541 (568)
T ss_dssp CCCSBTTBCCTTBCCCCCHHHHHHTT-TCEEEEESSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHhhcCCcccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 0 0 1112222344444 77888889999999999999988999998
No 63
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=64.09 E-value=42 Score=26.21 Aligned_cols=109 Identities=7% Similarity=0.040 Sum_probs=62.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC--HHHHHHHHhcc--CcEEEEecCCcCCChHHHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD--RETVFQSARKT--GRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d--~~~l~~~~~~~--~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
.++|++.|......+++++.+--+ .-.+..+++..=...+ .+.+.+.+++. +.|+++=+= .||--..++..+.
T Consensus 7 ~iiivsHG~~A~gl~~~~~~i~G~-~~~i~ai~~~~~~~~~~~~~~i~~~i~~~~~~gvliLtDl--~GGSp~n~a~~~~ 83 (142)
T 3bed_A 7 KLILMSHGRMAEETLASTQMIVGE-LADAAIVSMTAEDGLSGTQAKLAAILKEAGNVPTLVLADL--XGGTPCNVAMMAM 83 (142)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCT-TCCCEEEEECTTTHHHHHHHHHHHHHHHHCSCCEEEEESS--TTSHHHHHHHHHT
T ss_pred cEEEEcChHHHHHHHHHHHHHcCC-CCCEEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEEEC--CCCHHHHHHHHHh
Confidence 589999999888899999987432 2366667765322211 13355555543 457777553 3665555554444
Q ss_pred hhccccCCCCeEEEcccCCCCc-ccccccCCCCHHHHHHHHHH
Q psy8699 280 DKCFLSLEAPIRRVTGYDTPFP-HIFEPFYIPDKWRCLEAVKQ 321 (325)
Q Consensus 280 e~~~~~~~~~v~~~~g~~~~~~-~~~~~~~l~~~~~I~~~i~~ 321 (325)
.. ..++.-++|.+-|.- +.....+. +.+.+++.+.+
T Consensus 84 ~~-----~~~v~vi~GvNlpmlle~~~~~~~-~l~el~~~~~~ 120 (142)
T 3bed_A 84 GT-----YPQLRVVAGLNLAMAIEAAVSPVE-NVDELAAYLTQ 120 (142)
T ss_dssp TT-----CTTEEEEESCCHHHHHHHHHCCCC-CHHHHHHHHHH
T ss_pred cc-----CCCEEEEeCCCHHHHHHHHHccCC-CHHHHHHHHHH
Confidence 32 135766778775432 22222344 66777666554
No 64
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=64.01 E-value=17 Score=29.61 Aligned_cols=68 Identities=10% Similarity=0.206 Sum_probs=44.1
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH-------------HHHHHHhccCcEEEEecCCcCCChHHHHHH
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE-------------TVFQSARKTGRVIIAHEAPLTSGFGAELAA 276 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~-------------~l~~~~~~~~~vivvEe~~~~gglg~~v~~ 276 (325)
+|++-..|...++.+++. |.+++++++... +.+.- ...+.+.+++.||+.=-- +.|++...+..
T Consensus 16 ~g~T~~la~~i~~~l~~~-g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~-y~~~~~~~lk~ 92 (200)
T 2a5l_A 16 HGATAEMARQIARGVEQG-GFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT-RFGNMASPLKY 92 (200)
T ss_dssp SSHHHHHHHHHHHHHHHT-TCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEEC-BTTBCCHHHHH
T ss_pred CChHHHHHHHHHHHHhhC-CCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcCh-hccCccHHHHH
Confidence 355556677777788877 999999999875 22110 113446677777766554 56788877777
Q ss_pred HHHh
Q psy8699 277 SIQD 280 (325)
Q Consensus 277 ~l~e 280 (325)
++..
T Consensus 93 ~ld~ 96 (200)
T 2a5l_A 93 FLDG 96 (200)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 65
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=63.69 E-value=5.4 Score=29.70 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=45.8
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcCCChHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~gglg~ 272 (325)
..+++|++.| .....|.+|.+.|++. |++...+++..- |--.+.+.+... .+=.+|+++.. ..||+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~ifi~g~-~igG~d~ 86 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNST-GVEYETFDILED-EEVRQGLKTFSNWPTYPQLYVRGD-LVGGLDI 86 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHT-CSCEEEEESSSC-HHHHHHHHHHHSCCSSCEEECSSS-EEECHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHc-CCCeEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE-EEcCHHH
Confidence 4579999998 6778899999999998 999999998762 111122333222 12246777665 5688753
No 66
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=63.50 E-value=36 Score=34.32 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=52.9
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCC-ChhH-HHHHcCCCCcEEEee-
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYH-SQSP-EAYFAHTPGIKVVIP- 148 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~-~~~d-~~~~~~ip~~~v~~P- 148 (325)
+.++++ .++.. + .+++.+. .++..++++. +++....+..-.+.++. ..+| ...+++. |+.++.+
T Consensus 173 ~~v~~i-~GDG~l~eG~~~Eal~-~A~~~~L~~l-------ivI~dnN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~ 242 (690)
T 3m49_A 173 HYTYAI-CGDGDLMEGVSAEASS-LAAHLQLGRL-------VVLYDSNDISLDGDLNRSFSESVEDRYKAY-GWQVIRVE 242 (690)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHHH-HHHHTTCTTE-------EEEEEECSBCSSSBGGGTCCCCHHHHHHHH-TCEEEEES
T ss_pred CeEEEE-ECchhhhhccHHHHHH-HHHHhCCCeE-------EEEEECCCeecccchhhccchhHHHHHHHc-CCcEEEEe
Confidence 445553 67753 3 5667764 6776666542 11111222221232221 1223 3456666 8899988
Q ss_pred --CCHHHHHHHHHHhHh-CCCcEEEecc
Q psy8699 149 --RGPYKAKGLLLSCIK-DKDPCIFFEP 173 (325)
Q Consensus 149 --~~~~e~~~~~~~a~~-~~~Pv~i~~~ 173 (325)
.|..++..+++.+.+ .++|++|-..
T Consensus 243 DG~d~~~l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 243 DGNDIEAIAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp CTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred cCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 789999999999998 6899999654
No 67
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=62.61 E-value=16 Score=36.00 Aligned_cols=113 Identities=7% Similarity=0.033 Sum_probs=62.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccC-
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAV- 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~- 122 (325)
|.+|+..+. +=-..+++|.|+++.. -++++++ .++.. +..++.|. .+...+++... +++-.. .+..
T Consensus 410 ~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~-~GDG~~~~~~~~l~-~a~~~~lp~~~------vv~nN~~~~~~~ 481 (603)
T 4feg_A 410 SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNL-AGDGGASMTMQDLA-TQVQYHLPVIN------VVFTNCQYGFIK 481 (603)
T ss_dssp TCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHHHGGGHH-HHHHTTCCCEE------EEEECSBCHHHH
T ss_pred CCceecCcccccccchhHHHhhHHHhCCCCcEEEE-eccHHHhhhHHHHH-HHHHHCcCeEE------EEEECCchHHHH
Confidence 456665431 1113677888888774 4666664 67753 34455553 55555554421 111111 1110
Q ss_pred --------C-C-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH--hCCCcEEE
Q psy8699 123 --------G-H-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI--KDKDPCIF 170 (325)
Q Consensus 123 --------g-~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~--~~~~Pv~i 170 (325)
. . +...+..+...+.... |+..+.+.+..|+...++.+. +.++|++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~~gP~lI 540 (603)
T 4feg_A 482 DEQEDTNQNDFIGVEFNDIDFSKIADGV-HMQAFRVNKIEQLPDVFEQAKAIAQHEPVLI 540 (603)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHT-TCEEEEECBGGGHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHhcCCCcccCcCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHhcCCCcEEE
Confidence 0 1 1111222222333333 666777789999999999999 78999999
No 68
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=61.91 E-value=20 Score=28.59 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg 271 (325)
|++-..|...++.|++. |+++.++++... .+.+.+...+.+++.||+. --.+.|.+.
T Consensus 16 GnT~~iA~~ia~~l~~~-g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~G-spty~g~~p 72 (159)
T 3fni_A 16 GYSDRLAQAIINGITKT-GVGVDVVDLGAA--VDLQELRELVGRCTGLVIG-MSPAASAAS 72 (159)
T ss_dssp TTHHHHHHHHHHHHHHT-TCEEEEEESSSC--CCHHHHHHHHHTEEEEEEE-CCBTTSHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCeEEEEECcCc--CCHHHHHHHHHhCCEEEEE-cCcCCCCcc
Confidence 44444555566667776 999998888753 1455555556677766555 333444443
No 69
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=61.43 E-value=19 Score=30.00 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH----------HHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR----------ETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~----------~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
|....+.+++..+.++ |.+++++++.-+-.|+. +.+++.++..+.+|++=-. ++|++...+-.++.
T Consensus 16 S~~~~la~~~~~~~~~-~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPe-Yn~s~pg~LKn~iD 91 (190)
T 3u7r_A 16 SLNHKLMKVLQKLAEG-RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPE-YNRSYPGMIKNAID 91 (190)
T ss_dssp CHHHHHHHHHHHHHTT-TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCC-BTTBCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC-CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechh-hcccCCHHHHHHHH
Confidence 3444555555556566 88999999876522322 3467778888888887665 56777766666553
No 70
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=61.13 E-value=20 Score=31.80 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecccccC-------CC--HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSILP-------WD--RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P-------~d--~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
+...+..+++.+++. |.+++++++..+.. .+ .+.+.+.+...+.+|++=-- +++++...+..++.
T Consensus 74 T~~La~~~~~~l~~~-G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~-Yn~sipg~LKn~ID 147 (279)
T 2fzv_A 74 SRLAVEEAARLLQFF-GAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE-RHGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE-ETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc-cccCcCHHHHHHHH
Confidence 344566677788877 99999999988631 12 34567777888887777555 56888888777764
No 71
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=60.67 E-value=13 Score=26.57 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=41.1
Q ss_pred cEEEEEechhHHHH------HHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh--c-cCcEEEEecCCcCCChHHH
Q psy8699 204 DVTLIGWGTQVHVL------REVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR--K-TGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 204 dv~ii~~G~~~~~a------~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~--~-~~~vivvEe~~~~gglg~~ 273 (325)
+++|+++ +....+ .+|.+.|++. |+....+++..- |-..+.+.+... . +=..|+++.. ..||+-..
T Consensus 3 ~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~-~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~-~igG~d~l 77 (93)
T 1t1v_A 3 GLRVYST-SVTGSREIKSQQSEVTRILDGK-RIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNH-YCGDYELF 77 (93)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHT-TCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTE-EEEEHHHH
T ss_pred CEEEEEc-CCCCCchhhHHHHHHHHHHHHC-CCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCE-EEeCHHHH
Confidence 4666655 344455 7888999988 999999999752 211223333332 1 2267888776 46887543
No 72
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=60.61 E-value=30 Score=28.84 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 216 VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 216 ~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
.+..+++.+++. |.+++++++.. +.|.+.+.+.++..+.||+.=-- +.+++...+-.++.
T Consensus 35 l~~~~~~~~~~~-g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~-y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDL-GHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPG-WWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHT-TCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEEC-BTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCc-cccCCCHHHHHHHH
Confidence 455566677777 89999999875 67888888889999988777665 56888888877775
No 73
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=60.00 E-value=13 Score=28.08 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=38.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
++|.+. +....|.+|.+.|++. |+..+++++.. .|.+.+.+.+.+++.+
T Consensus 2 i~iY~~-~~C~~C~kak~~L~~~-gi~~~~~di~~-~~~~~~~l~~~~~~~g 50 (114)
T 1rw1_A 2 YVLYGI-KACDTMKKARTWLDEH-KVAYDFHDYKA-VGIDREHLRRWCAEHG 50 (114)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHT-TCCEEEEEHHH-HCCCHHHHHHHHHHHC
T ss_pred EEEEEC-CCChHHHHHHHHHHHC-CCceEEEeecC-CCCCHHHHHHHHHhCC
Confidence 455544 5668899999999998 99999999975 5778888887776554
No 74
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=58.97 E-value=12 Score=28.66 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=39.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
++|.+. +.+..|.+|.+.|++. |+..+++++.. .|...+.+.+.+++.+
T Consensus 7 i~iY~~-p~C~~c~ka~~~L~~~-gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 7 VTIYHN-PRCSKSRETLALVEQQ-GITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp CEEECC-TTCHHHHHHHHHHHTT-TCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred EEEEEC-CCCHHHHHHHHHHHHc-CCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 455444 5677899999999998 99999999987 6888888888877664
No 75
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=57.73 E-value=30 Score=34.45 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=57.7
Q ss_pred HHHHHHHHhccC------------CeEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-C
Q psy8699 62 IVGFGIGLAVSG------------ATAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-G 125 (325)
Q Consensus 62 ~v~~a~GlA~~G------------~~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g 125 (325)
.++.|.|+|++- -+.++++ .++.. + .+++.+. .++..++++. .. ++.-...+..+. +
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v-~GDG~~~eG~~~Eal~-~A~~~~L~~l--iv---i~nnN~~~i~~~~~ 191 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCL-CGDGDLQEGISYEACS-LAGLHKLDNF--IL---IYDSNNISIEGDVG 191 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEE-EEHHHHHSHHHHHHHH-HHHHTTCTTE--EE---EEEECSEETTEEGG
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEE-ECCcchhhccHHHHHH-HHHHcCCCcE--EE---EEECCCcccccchh
Confidence 455666666542 3445553 67753 3 5677774 6776666542 11 111111111111 1
Q ss_pred CCCCChhHHHHHcCCCCcEEEeeC---CHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 126 ALYHSQSPEAYFAHTPGIKVVIPR---GPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 126 ~th~~~~d~~~~~~ip~~~v~~P~---~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
. ....+....++++ |+.++ +. |..++..+++.|.+.++|++|-..
T Consensus 192 ~-~~~~d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~~~~P~lI~v~ 239 (632)
T 3l84_A 192 L-AFNENVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKKSTKPCLIIAK 239 (632)
T ss_dssp G-TCCCCHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred h-hcChhHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1122223566666 88887 44 789999999999888999998654
No 76
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=57.28 E-value=23 Score=35.81 Aligned_cols=89 Identities=8% Similarity=0.059 Sum_probs=51.7
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCC--CChhHHHHHcCCCCcEEEee-
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALY--HSQSPEAYFAHTPGIKVVIP- 148 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th--~~~~d~~~~~~ip~~~v~~P- 148 (325)
+.++++ .++.. + ..++.+ +.++..++++. +++....+..-.+.+. ...+....+++. |+.++.|
T Consensus 188 ~~vv~i-~GDG~l~eG~~~Eal-~~A~~~~L~~l-------ivI~dnN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~v 257 (711)
T 3uk1_A 188 HHTYVF-LGDGCLMEGISHEAC-SLAGTLKLNKL-------IALYDDNGISIDGDVVNWFHDDTPKRFEAY-GWNVIPNV 257 (711)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHH-HHHHHTTCTTE-------EEEEEECSEETTEEGGGTCCCCHHHHHHHT-TCEEEEEE
T ss_pred CeEEEE-ECCcchhhccHHHHH-HHHHHhCCCcE-------EEEEECCCcccccchhhhcCCCHHHHHHHc-CCcEEEEe
Confidence 455563 67753 3 566776 46776666542 1111111211111111 122233566666 7777765
Q ss_pred --CCHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 149 --RGPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 149 --~~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
.|..++..+++.|.+.++|++|-..
T Consensus 258 dG~d~~~l~~Al~~A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 258 NGHDVDAIDAAIAKAKRSDKPSLICCK 284 (711)
T ss_dssp ETTCHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 5889999999999888999999654
No 77
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=57.05 E-value=44 Score=28.34 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccC---------------------CCHHHHHHHHhccCcEEEEecCCcCCC
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILP---------------------WDRETVFQSARKTGRVIIAHEAPLTSG 269 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P---------------------~d~~~l~~~~~~~~~vivvEe~~~~gg 269 (325)
|.+...+..+++.|++..|.+++++++..+.+ -|.+.+.+.+..++.||+.=-- +.++
T Consensus 15 s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~-y~~~ 93 (242)
T 1sqs_A 15 SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPV-YLQN 93 (242)
T ss_dssp CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEE-CSSS
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccc-cccC
Confidence 33445555566777653378999999875421 2345566777888877776554 5688
Q ss_pred hHHHHHHHHHh
Q psy8699 270 FGAELAASIQD 280 (325)
Q Consensus 270 lg~~v~~~l~e 280 (325)
+...+..++..
T Consensus 94 ~p~~lK~~iDr 104 (242)
T 1sqs_A 94 VSVDTKNFIER 104 (242)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888777754
No 78
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=56.98 E-value=32 Score=26.08 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=45.9
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCC-cEEEEecccccCCCHHH---HHHHHh-ccCcEEEEecCCcCCChHH
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGV-SCEVIDLVSILPWDRET---VFQSAR-KTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi-~~~vi~~~~l~P~d~~~---l~~~~~-~~~~vivvEe~~~~gglg~ 272 (325)
..+++|++.+ .....|.+|.+.|++. |+ +...+++.. |.+. +.+... .+=..|+++.. ..||+..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-gv~~~~~vdV~~----d~~~~~~l~~~tg~~tvP~vfI~g~-~IGG~d~ 92 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLH-GVRDYAAYNVLD----DPELRQGIKDYSNWPTIPQVYLNGE-FVGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCCEEEESSS----CHHHHHHHHHHHTCCSSCEEEETTE-EEESHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHc-CCCCCEEEEcCC----CHHHHHHHHHHhCCCCcCeEEECCE-EEeChHH
Confidence 4579999998 4788999999999998 99 499999864 3332 222211 23367888776 4588764
No 79
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=56.46 E-value=66 Score=25.17 Aligned_cols=108 Identities=6% Similarity=0.029 Sum_probs=62.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCC--HHHHHHHHhc-----cCcEEEEecCCcCCChHHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWD--RETVFQSARK-----TGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d--~~~l~~~~~~-----~~~vivvEe~~~~gglg~~v~ 275 (325)
.++|++.|. ......++++.+--+ -.+..++++.=...+ .+.+.+.+++ .+.|+++=+= |.+.. ++
T Consensus 6 giiIvtHG~s~A~~l~~~a~~i~G~--~~~~aid~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~Dm---GSp~n-~a 79 (139)
T 3gdw_A 6 GVFVLMHGDSTASSMLKTAQELLGT--SIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDM---GSLNS-FG 79 (139)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC--CCCEEEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECS---GGGGG-HH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHcCc--ccEEEEEccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeC---CCHHH-HH
Confidence 588999999 888888999886532 255666665543322 2445666654 2345555442 55433 33
Q ss_pred HHHHhhccccCCCCeEEEcccCCCCc-cccc--ccCCCCHHHHHHHH-HHH
Q psy8699 276 ASIQDKCFLSLEAPIRRVTGYDTPFP-HIFE--PFYIPDKWRCLEAV-KQI 322 (325)
Q Consensus 276 ~~l~e~~~~~~~~~v~~~~g~~~~~~-~~~~--~~~l~~~~~I~~~i-~~~ 322 (325)
..+.+. ...++.-+.|.+-|.- +... ..+. +-+.|++.+ +++
T Consensus 80 ~~l~~~----~~~~v~vI~gvnlpmllea~~~~~~~~-~L~el~~~~~~~~ 125 (139)
T 3gdw_A 80 NMLFEE----TGIRTKAITMTSTMIVLEAIRMASVGR-SLEDIYQNIQLSF 125 (139)
T ss_dssp HHHHHH----HCCCEEEECSCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred HHHHHh----hCCCEEEEeCCCHHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Confidence 344432 1246766777664422 2221 3455 889999888 444
No 80
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=56.16 E-value=29 Score=27.58 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg 271 (325)
|++-..|...++.|++. |+++.++++... +.+.+...+.+++.|++.=.- +.|.+.
T Consensus 12 GnT~~~A~~ia~~l~~~-g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gspt-y~g~~p 67 (161)
T 3hly_A 12 GYSDRLSQAIGRGLVKT-GVAVEMVDLRAV---DPQELIEAVSSARGIVLGTPP-SQPSEA 67 (161)
T ss_dssp TTHHHHHHHHHHHHHHT-TCCEEEEETTTC---CHHHHHHHHHHCSEEEEECCB-SSCCHH
T ss_pred hHHHHHHHHHHHHHHhC-CCeEEEEECCCC---CHHHHHHHHHhCCEEEEEcCC-cCCchh
Confidence 44445555666677777 999999988753 445555556677776666333 334443
No 81
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=55.26 E-value=29 Score=26.44 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=39.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
++|.+. +.+..|.+|.+.|++. |+..+++++.. .|...+.|.+.+++.+
T Consensus 5 i~iY~~-~~C~~c~ka~~~L~~~-gi~~~~~di~~-~~~~~~eL~~~l~~~g 53 (120)
T 3fz4_A 5 LTFYEY-PKCSTCRRAKAELDDL-AWDYDAIDIKK-NPPAASLIRNWLENSG 53 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHH-TCCEEEEETTT-SCCCHHHHHHHHHHSC
T ss_pred EEEEeC-CCChHHHHHHHHHHHc-CCceEEEEecc-CchhHHHHHHHHHHcC
Confidence 344443 5677899999999998 99999999977 6888898888887654
No 82
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=54.97 E-value=41 Score=31.48 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=51.2
Q ss_pred EEEEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 205 VTLIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 205 v~ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
-++|.|+||. ..|...++.|+++ |+++.++++..+..-|...+.+.+.+++.+++- .-+++|++-..+...+.
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~-Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlG-spT~~~~~~p~~~~~l~ 343 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEK-GFTPVVYKFSDEERPAISEILKDIPDSEALIFG-VSTYEAEIHPLMRFTLL 343 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHT-TCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEE-ECCTTSSSCHHHHHHHH
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhc-CCceEEEEeccCCCCCHHHHHHHHHhCCeEEEE-eCCcCCcCCHHHHHHHH
Confidence 4556666655 4456666778888 999999999888888888887777788775554 44467777555554443
No 83
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=54.52 E-value=39 Score=33.89 Aligned_cols=90 Identities=9% Similarity=0.006 Sum_probs=50.4
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCCCChhHHHHHcCCCCcEEEeeC-
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQSPEAYFAHTPGIKVVIPR- 149 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~~d~~~~~~ip~~~v~~P~- 149 (325)
+.++++ .++.. + ..++.+ +.++..++++.. + ++.-...+..+. +. ....+....+++. |+.++-+.
T Consensus 149 ~~v~~i-~GDG~l~eG~~~Eal-~~A~~~~L~~li-v----i~dnN~~~i~~~~~~-~~~~d~~~~~~a~-G~~~~~~vd 219 (663)
T 3kom_A 149 HHTYVF-LGDGCLMEGVSHEAC-SLAGTLGLNKLV-A----FWDDNNISIDGDTKG-WFSDNTPERFRAY-GWHVIENVD 219 (663)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHH-HHHHHHTCTTEE-E----EEEECC-----CGGG-TCCCCHHHHHHHT-TCEEEEEEE
T ss_pred CeEEEE-ECchhhhhchHHHHH-HHHHHhCCCeEE-E----EEECCCcccccchhh-hcchhHHHHHHHC-CCeEEEEEc
Confidence 456663 67753 3 566776 467766665421 1 111111111221 11 1122233566666 88877443
Q ss_pred --CHHHHHHHHHHhHh-CCCcEEEecc
Q psy8699 150 --GPYKAKGLLLSCIK-DKDPCIFFEP 173 (325)
Q Consensus 150 --~~~e~~~~~~~a~~-~~~Pv~i~~~ 173 (325)
|..++..+++.|.+ .++|++|-..
T Consensus 220 G~d~~~l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 220 GHDFVAIEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 78999999999998 6999999654
No 84
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=54.34 E-value=17 Score=35.61 Aligned_cols=114 Identities=10% Similarity=-0.008 Sum_probs=63.0
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC
Q psy8699 49 KHRVFNTPL-S-EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG 123 (325)
Q Consensus 49 p~r~~~~gI-a-E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g 123 (325)
|.+|++.|- . =-..++.|.|++++. -++++++ .++.. +..+..|. .+...+++.. . +++-.. .+..+
T Consensus 416 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i-~GDGs~~~~~~~L~-ta~~~~l~~~---i---vv~NN~~~~~~~ 487 (590)
T 1ybh_A 416 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDI-DGDGSFIMNVQELA-TIRVENLPVK---V---LLLNNQHLGMVM 487 (590)
T ss_dssp TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHHTTTHHH-HHHHTTCCEE---E---EEEECSBCHHHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEE-EccchhhccHHHHH-HHHHhCCCcE---E---EEEECCcchHHH
Confidence 678888652 2 223677888888763 4666664 67743 33455554 4555555431 1 111111 11100
Q ss_pred ------CC----CC-----C----CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 124 ------HG----AL-----Y----HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 124 ------~g----~t-----h----~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
.+ .+ + ...+...+.+.+ |+..+...+.+|+..+++++++.++|++|-
T Consensus 488 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 553 (590)
T 1ybh_A 488 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAAC-GIPAARVTKKADLREAIQTMLDTPGPYLLD 553 (590)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHT-TCCEEEECBHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHhcCCccccccccccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 01 0 012222344443 555566689999999999999999999883
No 85
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=54.06 E-value=18 Score=35.22 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=26.6
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 142 GIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 142 ~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
|+.-+...+.+|+..+++++++.++|++|
T Consensus 505 G~~~~~v~~~~~l~~al~~a~~~~gp~li 533 (556)
T 3hww_A 505 ELKYHRPQNWQELETAFADAWRTPTTTVI 533 (556)
T ss_dssp TCEEECCSSHHHHHHHHHHHTTSSSEEEE
T ss_pred CCcEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 67788889999999999999999999998
No 86
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=53.96 E-value=20 Score=34.99 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=63.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--C
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--V 122 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~ 122 (325)
|.+|+..+- +=-..++.|.|+|++. -++++++ .++.. +..+..|. .+...+++.. +++..-.+. .
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i-~GDG~~~~~~~~L~-ta~~~~l~~~-------ivv~nN~~~~~~ 480 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSV-SGDGGFLQSSMELE-TAVRLKANVL-------HLIWVDNGYNMV 480 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEE-EEHHHHHHHTTHHH-HHHHHTCCEE-------EEEEECSBCHHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEE-EcChHHhccHHHHH-HHHHhCCCcE-------EEEEECCchhHH
Confidence 567765320 1113567788887663 3666664 67743 33455553 4555555432 112211111 1
Q ss_pred C---------C-CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 G---------H-GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 g---------~-g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+ . +...+..+...+...+ |+..+...+.+|+...++++++.++|++|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 538 (566)
T 1ozh_A 481 AIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVVA 538 (566)
T ss_dssp HHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHhcCCCccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0 1112222233455555 777788889999999999999999999883
No 87
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=53.77 E-value=42 Score=32.55 Aligned_cols=112 Identities=10% Similarity=-0.045 Sum_probs=63.0
Q ss_pred CCceeec---hhhHHHHHHHHHHHhccC---CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-Cc
Q psy8699 49 KHRVFNT---PLSEQGIVGFGIGLAVSG---ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CM 120 (325)
Q Consensus 49 p~r~~~~---gIaE~~~v~~a~GlA~~G---~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g 120 (325)
|.+|+.. |.- -..++.|.|+|++. -++++++ .++.. +..+..|. .+...+++.. . +++-.. .+
T Consensus 409 ~~~~~~~~g~g~~-G~~l~~AiGaa~a~~~~~~~vv~i-~GDG~~~~~~~~L~-ta~~~~l~~~---i---vv~nN~~~~ 479 (563)
T 2uz1_A 409 PGGFLCHGYLGSM-GVGFGTALGAQVADLEAGRRTILV-TGDGSVGYSIGEFD-TLVRKQLPLI---V---IIMNNQSWG 479 (563)
T ss_dssp CSEEECCCTTCCT-TTHHHHHHHHHHHHHHHTCEEEEE-EEHHHHGGGTTHHH-HHHHHTCCCE---E---EEEECSBCH
T ss_pred CCeEECCCCCccc-cChHHHHHHHHHHhhCCCCeEEEE-EccHHHhCCHHHHH-HHHHhCCCeE---E---EEEeCCcch
Confidence 6677762 211 15667888887653 4666664 67743 33455554 4555555432 1 111111 11
Q ss_pred cCC------CCC-CC-----CChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 121 AVG------HGA-LY-----HSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 121 ~~g------~g~-th-----~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
..+ .+. .. +..+...+...+ |+..+...+.+|+...++++++.++|++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 540 (563)
T 2uz1_A 480 ATLHFQQLAVGPNRVTGTRLENGSYHGVAAAF-GADGYHVDSVESFSAALAQALAHNRPACI 540 (563)
T ss_dssp HHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHhcCCCcccCCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 111 011 11 222223444445 77778889999999999999999999998
No 88
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=53.71 E-value=54 Score=32.67 Aligned_cols=91 Identities=9% Similarity=-0.042 Sum_probs=51.1
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeC--
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPR-- 149 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~-- 149 (325)
+.++++ .++.. + ..++.+ +.++..++++. +. ++.-...+..+.-......+....+... |+.++.+.
T Consensus 151 ~~v~~~-~GDG~~~eG~~~Eal-~~A~~~~L~~l--i~---i~~nN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG 222 (651)
T 2e6k_A 151 HYTYVL-ASDGDLMEGVSGEAA-SLAGHWGLSKL--IV---FWDDNRISIDGPTDLAFTEDVLARYRAY-GWQTLRVEDV 222 (651)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHH-HHHHHTTCTTE--EE---EEEECCEETTEEGGGTCCSCHHHHHHHT-TCEEEEESCT
T ss_pred CEEEEE-EChhhhchhHHHHHH-HHHHHcCCCeE--EE---EEECCCcccccccccccCccHHHHHHhC-CCeEEEEeCC
Confidence 455553 67764 4 567776 46776666542 11 1111111211210011222233566666 88887443
Q ss_pred -CHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 150 -GPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 150 -~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
|..++..+++.|.+.++|++|-..
T Consensus 223 ~d~~~l~~al~~a~~~~~P~lI~~~ 247 (651)
T 2e6k_A 223 NDLEALRKAIKLAKLDERPTLIAVR 247 (651)
T ss_dssp TCHHHHHHHHHHHHHSSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEE
Confidence 789999999999888899988653
No 89
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=53.53 E-value=30 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 212 TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 212 ~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
+.+..|.+|.+.|++. |+...++++.. .|.+.+.+.+.+++.
T Consensus 8 ~~C~~c~ka~~~L~~~-gi~~~~~di~~-~~~~~~el~~~l~~~ 49 (120)
T 3l78_A 8 PSCTSCRKARAWLNRH-DVVFQEHNIMT-SPLSRDELLKILSYT 49 (120)
T ss_dssp SSCHHHHHHHHHHHHT-TCCEEEEETTT-SCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CCCeEEEeccc-CCCcHHHHHHHHhhc
Confidence 5677899999999998 99999999976 577888888877643
No 90
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=53.25 E-value=44 Score=27.67 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhcCCcEEEEecccccC---CCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 217 LREVAGLAKEQLGVSCEVIDLVSILP---WDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 217 a~~A~~~L~~~~gi~~~vi~~~~l~P---~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
+...++.+++. |.+++++++....| .|.+.+.+.++..+.||+.=-- ..+++.+.+-.++..
T Consensus 19 ~~~l~~~~~~~-g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~-y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 19 HKHWSDAVRQH-TDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPI-YWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHTTC-TTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEEC-BTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcCh-hhcCCCHHHHHHHHH
Confidence 33445556666 88999999988764 5667777888889988877665 568888888887764
No 91
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=52.06 E-value=23 Score=26.80 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=39.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
.++|.+. +.+..|.+|.+.|++. |+..+++++.. .|.+.+.+.+.+++.+
T Consensus 6 ~i~iY~~-~~C~~C~ka~~~L~~~-gi~y~~~di~~-~~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 6 SVTIYGI-KNCDTMKKARIWLEDH-GIDYTFHDYKK-EGLDAETLDRFLKTVP 55 (120)
T ss_dssp CEEEEEC-SSCHHHHHHHHHHHHH-TCCEEEEEHHH-HCCCHHHHHHHHHHSC
T ss_pred EEEEEEC-CCChHHHHHHHHHHHc-CCcEEEEeeeC-CCCCHHHHHHHHHHcC
Confidence 3566655 5568899999999998 99999999975 4778888888777665
No 92
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=51.90 E-value=21 Score=27.25 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=29.2
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEE
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIA 261 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivv 261 (325)
+|++-..|...++.|++. |++++++++....+ + .+.+++.+++.
T Consensus 9 tGnT~~iA~~ia~~l~~~-g~~v~~~~~~~~~~---~----~l~~~d~iiig 52 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIES-GKDVNTINVSDVNI---D----ELLNEDILILG 52 (138)
T ss_dssp SSHHHHHHHHHHHHHHHT-TCCCEEEEGGGCCH---H----HHTTCSEEEEE
T ss_pred CchHHHHHHHHHHHHHHC-CCeEEEEEhhhCCH---H----HHhhCCEEEEE
Confidence 455666667777778877 99999998876532 2 23456665555
No 93
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=50.73 E-value=27 Score=33.88 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=61.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccCCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc-CCC
Q psy8699 49 KHRVFNTPL--SEQGIVGFGIGLAVSGATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA-VGH 124 (325)
Q Consensus 49 p~r~~~~gI--aE~~~v~~a~GlA~~G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~g~ 124 (325)
|.++++.|. .=-..++.|.|++++.-++++++ .++.. +..+..|. .+...+++.. +++..-.|. ...
T Consensus 411 p~~~~~~g~~g~~G~~l~~AiGaa~a~~~~vv~i-~GDGsf~~~~~el~-ta~~~~l~~~-------ivv~NN~~~~~~~ 481 (564)
T 2q28_A 411 PRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAI-EGDSAFGFSGMEIE-TICRYNLPVT-------IVIFNNGGIYRGD 481 (564)
T ss_dssp SSCEEESTTTTCTTCHHHHHHHHHHHHCSCEEEE-EEHHHHHTTGGGHH-HHHHTTCCEE-------EEEEECSBSSCSC
T ss_pred CCeEecCCCCCcccchHHHHHHHhhcCCCcEEEE-EcchHhhccHHHHH-HHHHhCCCeE-------EEEEeCchhHHHH
Confidence 667776543 11235778888887755666664 66642 22333343 4555555432 122222221 110
Q ss_pred -------C---CCC-CChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 125 -------G---ALY-HSQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 125 -------g---~th-~~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+ .+. ....|. .+...+ |+..+...+.+|+..+++++++.++|++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 538 (564)
T 2q28_A 482 GVDLSGAGAPSPTDLLHHARYDKLMDAF-RGVGYNVTTTDELRHALTTGIQSRKPTII 538 (564)
T ss_dssp CCCTTSSCCCCTTBCCTTCCGGGGGGGG-TCEEEEECSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHhccCCccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 000 001133 233333 67777889999999999999988999988
No 94
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=50.65 E-value=29 Score=25.12 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCChHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~gglg~ 272 (325)
.++++++. +....|.+|...|++. |+..+.+++....+-+.+.+.+.+++ +=.++++++....||+..
T Consensus 22 ~~v~ly~~-~~Cp~C~~ak~~L~~~-~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~ 94 (103)
T 3nzn_A 22 GKVIMYGL-STCVWCKKTKKLLTDL-GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE 94 (103)
T ss_dssp SCEEEEEC-SSCHHHHHHHHHHHHH-TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred CeEEEEcC-CCCchHHHHHHHHHHc-CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence 45666654 6778999999999998 99999999887543222333332221 225677766335566644
No 95
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=50.37 E-value=97 Score=24.85 Aligned_cols=108 Identities=8% Similarity=0.032 Sum_probs=63.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH-HHHHHHHhc---cCcEEEEecCCcCCChHHHHHHHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR-ETVFQSARK---TGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~-~~l~~~~~~---~~~vivvEe~~~~gglg~~v~~~l 278 (325)
..++|++.|......+++++.+--+ --.+..+++..=.|-+. +.+.+.+++ .+.|+++=+= .||--..++..+
T Consensus 22 ~~iII~sHG~~A~gl~~s~~~i~G~-~~~v~av~~~~~~~~~~~~~~~~~i~~~~~~~gVLiLtDl--~GGSP~n~a~~~ 98 (159)
T 3mtq_A 22 RHYIFASHGSFANGLLNSVELILGK-QPDIHTLCAYVEEEVDLTQQVEALVARFPAQDELIVITDI--FAGSVNNEFVRF 98 (159)
T ss_dssp EEEEEEEETTHHHHHHHHHHHHHCC-CTTEEEEEETSCSSSCHHHHHHHHHHTSCTTSEEEEEESC--TTSHHHHHHHGG
T ss_pred ceEEEEeCcHHHHHHHHHHHHHcCC-CCCeEEEECCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeC--CCCCHHHHHHHH
Confidence 3689999999999999999987432 23677788654333122 346666665 3457777553 466655554444
Q ss_pred HhhccccCCCCeEEEcccCCCCc-cccc-ccCCCCHHHHHHHHH
Q psy8699 279 QDKCFLSLEAPIRRVTGYDTPFP-HIFE-PFYIPDKWRCLEAVK 320 (325)
Q Consensus 279 ~e~~~~~~~~~v~~~~g~~~~~~-~~~~-~~~l~~~~~I~~~i~ 320 (325)
.+ ..++.-++|.+-|.- +++. .... +.+.+++.+.
T Consensus 99 ~~------~~~v~vItGvNLpMlle~~~~~~~~-~l~el~~~~i 135 (159)
T 3mtq_A 99 LS------RPHFHLLSGLNLPLIIDLLISAAED-NTEKLITEAL 135 (159)
T ss_dssp GG------STTEEEEECCCHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred hc------CCCeEEEeCCCHHHHHHHHHhhcCC-CHHHHHHHHH
Confidence 32 135666778764321 2222 2334 6666665554
No 96
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=49.48 E-value=26 Score=26.74 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=39.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
++|.+. +.+..|.+|.+.|++. |+..+++++.. .|...+.+.+.+++.+
T Consensus 6 i~iY~~-p~C~~c~ka~~~L~~~-gi~~~~~di~~-~~~~~~eL~~~l~~~g 54 (120)
T 3gkx_A 6 TLFLQY-PACSTCQKAKKWLIEN-NIEYTNRLIVD-DNPTVEELKAWIPLSG 54 (120)
T ss_dssp CEEEEC-TTCHHHHHHHHHHHHT-TCCCEEEETTT-TCCCHHHHHHHHHHHT
T ss_pred EEEEEC-CCChHHHHHHHHHHHc-CCceEEEeccc-CcCCHHHHHHHHHHcC
Confidence 444443 5677899999999998 99999999987 5788888888877654
No 97
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=49.38 E-value=18 Score=29.62 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecccccCCC-----------HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 215 HVLREVAGLAKEQLGVSCEVIDLVSILPWD-----------RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 215 ~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d-----------~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
..+..+++.++ . |.+++++++..+..++ .+.+.+.+..++.||+.=-- +.+++...+..++..
T Consensus 24 ~la~~i~~~l~-~-g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~-y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 24 AALQEAIGLVP-P-GMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE-YNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHHHHHTTCC-T-TCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE-ETTEECHHHHHHHHH
T ss_pred HHHHHHHHhcc-C-CCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc-cccCcCHHHHHHHHH
Confidence 33444455555 5 7889999887743332 23455566777776666443 457777776666643
No 98
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=48.92 E-value=46 Score=26.86 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHHHHhhc-----CCcEEEEeccc--ccCCCH--------------------HHHHHHHhccCcEEEEec
Q psy8699 211 GTQVHVLREVAGLAKEQL-----GVSCEVIDLVS--ILPWDR--------------------ETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~-----gi~~~vi~~~~--l~P~d~--------------------~~l~~~~~~~~~vivvEe 263 (325)
|.+...+...++.+++.. |.+++++++.. +.|++. +.+.+.+..++.||+.=-
T Consensus 14 ~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEec
Confidence 334444555566665531 57788888765 322211 234555666676666544
Q ss_pred CCcCCChHHHHHHHHH
Q psy8699 264 APLTSGFGAELAASIQ 279 (325)
Q Consensus 264 ~~~~gglg~~v~~~l~ 279 (325)
- +.+++...+..++.
T Consensus 94 ~-y~~~~p~~lK~~iD 108 (191)
T 1t0i_A 94 Q-YNWGYPAALKNAID 108 (191)
T ss_dssp C-BTTBCCHHHHHHHH
T ss_pred e-ECCCCCHHHHHHHH
Confidence 4 45666666666654
No 99
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=48.70 E-value=45 Score=30.71 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcc----C-CeEEEEecccccH--H-HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChh
Q psy8699 61 GIVGFGIGLAVS----G-ATAIAEIQFADYI--F-PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQS 132 (325)
Q Consensus 61 ~~v~~a~GlA~~----G-~~p~~~it~~~F~--~-ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~ 132 (325)
..+..|.|+|++ | -++++++ +++.. + ..++.+ +.++..++|.. + ++.-...+..+.-....+..
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i-~GDGa~~~G~~~Eal-~~A~~~~lpvi--~----vv~NN~~gi~~~~~~~~~~~ 217 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITY-TGDGGTSQGDFYEGI-NFAGAFKAPAI--F----VVQNNRFAISTPVEKQTVAK 217 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEE-EETGGGGSHHHHHHH-HHHHHTTCCEE--E----EEEECSEETTEEGGGTCSCS
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEE-EchhhhhhcHHHHHH-HHHHHHCcCEE--E----EEEcCCccceeccccccCCC
Confidence 344566666655 2 3455553 67743 2 345555 46776666532 1 11112112211100111112
Q ss_pred HH---HHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEec
Q psy8699 133 PE---AYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFFE 172 (325)
Q Consensus 133 d~---~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~~ 172 (325)
|+ +-.-.+|++.| .-.|+.++..+++.|++ .++|++|-.
T Consensus 218 d~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 218 TLAQKAVAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp CSGGGGGGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CHHHHHHHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22 22234676654 44589999999999986 589999843
No 100
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=48.69 E-value=20 Score=26.12 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=43.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHH-hc-cCcEEEEecCCcCCChHHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSA-RK-TGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~-~~-~~~vivvEe~~~~gglg~~ 273 (325)
.+++|++. +....|.+|.+.|++. |+....+++..-.+. .+.+.+.. .. +=..++++.. ..||+...
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~-~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~-~igG~d~l 84 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRK-GVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQ-HIGGCDDI 84 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHH-TCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTE-EEESHHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHC-CCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCE-EEeChHHH
Confidence 46777766 6678999999999998 999999998763211 12233322 21 2256777655 56887653
No 101
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=48.45 E-value=59 Score=27.20 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEE
Q psy8699 202 GTDVTLIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVI 259 (325)
Q Consensus 202 g~dv~ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vi 259 (325)
++++++|.|++.. .......+.+++- |+++.++++.. -+.+.+.+.+++.+.|+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~l-G~~v~~~~i~~---~~~~~~~~~l~~ad~I~ 84 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESL-GLLVEELDIAT---ESLGEITTKLRKNDFIY 84 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHT-TCEEEECCTTT---SCHHHHHHHHHHSSEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHc-CCeEEEEEecC---CChHHHHHHHHhCCEEE
Confidence 5789999988752 2344445556665 99888887665 24555666677777655
No 102
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=48.17 E-value=92 Score=23.96 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=63.1
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCH--HHHHHHHhcc---CcEEEEecCCcCCChHHHHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR--ETVFQSARKT---GRVIIAHEAPLTSGFGAELAAS 277 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~--~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~ 277 (325)
.++|++.|. ......++++.+--+ -.+..++++.=...+. +.+.+.+++. +.|+++=+= |.+.. ++..
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~--~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm---GSp~n-~a~~ 79 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI--ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM---GSLTS-FGNI 79 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC--CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECS---GGGGT-HHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc--cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC---CCHHH-HHHH
Confidence 589999999 888888999886432 2566677655332221 3455566653 345555442 54433 3444
Q ss_pred HHhhccccCCCCeEEEcccCCCCc-ccc--cccCCCCHHHHHHHHHHHh
Q psy8699 278 IQDKCFLSLEAPIRRVTGYDTPFP-HIF--EPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 278 l~e~~~~~~~~~v~~~~g~~~~~~-~~~--~~~~l~~~~~I~~~i~~~~ 323 (325)
+.+. ...++.-+.|.+-|.- +.. ....- +-+.|++.++++-
T Consensus 80 l~~~----~~~~v~vI~gvnlpmllea~~~~~~~~-~l~el~~~~~~~~ 123 (130)
T 3gx1_A 80 LTEE----LGIRTKTVTMVSTPVVLEAMRKASLGR-GLEDIYQSCEQLF 123 (130)
T ss_dssp HHHH----HCCCEEEECSCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred HHHh----cCCCEEEEeCCCHHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Confidence 4432 1246766777664322 222 23445 7888888887653
No 103
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=47.15 E-value=74 Score=25.65 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=45.0
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccccCC--------------CHHHHHHHHhccCcEEEEecCCcCCChHHHHH
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPW--------------DRETVFQSARKTGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~--------------d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~ 275 (325)
+|++-..+..+++.+++. |.+++++++....|. +.+. .+.+..++.||+.=-- +.|++...+.
T Consensus 14 ~g~T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~-y~~~~~~~lk 90 (199)
T 2zki_A 14 YGSIVELAKEIGKGAEEA-GAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPT-RYGNMAGGLK 90 (199)
T ss_dssp SSHHHHHHHHHHHHHHHH-SCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEEC-BTTBCCHHHH
T ss_pred ccHHHHHHHHHHHHHHhC-CCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECCc-cccCccHHHH
Confidence 455556677777788887 999999998775111 0111 3445677777776554 5688888887
Q ss_pred HHHHh
Q psy8699 276 ASIQD 280 (325)
Q Consensus 276 ~~l~e 280 (325)
.++..
T Consensus 91 ~~ld~ 95 (199)
T 2zki_A 91 TFLDT 95 (199)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77754
No 104
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=46.93 E-value=22 Score=28.01 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=37.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
++|.+. +.+..|.+|.+.|++. |+..+++++.. .|...+.+.+.+++.
T Consensus 4 itiY~~-p~C~~crkak~~L~~~-gi~~~~idi~~-~~~~~~eL~~~~~~~ 51 (141)
T 1s3c_A 4 ITIYHN-PASGTSRNTLEMIRNS-GTEPTIILYLE-NPPSRDELVKLIADM 51 (141)
T ss_dssp CEEECC-TTCHHHHHHHHHHHHT-TCCCEEECTTT-SCCCHHHHHHHHHHH
T ss_pred EEEEEC-CCChHHHHHHHHHHHc-CCCEEEEECCC-CCccHHHHHHHhccc
Confidence 444443 6778899999999998 99999999976 577888887776654
No 105
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=46.93 E-value=28 Score=28.75 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCC-----------------CH-HHHHHHHhccCcEEEEecCCcCCChHH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPW-----------------DR-ETVFQSARKTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~-----------------d~-~~l~~~~~~~~~vivvEe~~~~gglg~ 272 (325)
|++-..+...++.+++. |.+++++++....|. |. +.+.+.+..++.||+.=-- +.|++..
T Consensus 18 g~T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~-y~~~~~~ 95 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRAA-GAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPT-RFGGATS 95 (211)
T ss_dssp SHHHHHHHHHHHHHHHT-TCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEE-ETTEECH
T ss_pred ChHHHHHHHHHHHHhcC-CCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCc-cccCccH
Confidence 55566677777888887 999999998875110 10 1233456677777766444 5688888
Q ss_pred HHHHHHHh
Q psy8699 273 ELAASIQD 280 (325)
Q Consensus 273 ~v~~~l~e 280 (325)
.+..++..
T Consensus 96 ~lk~~ld~ 103 (211)
T 1ydg_A 96 QMRAFIDT 103 (211)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88777754
No 106
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=46.68 E-value=25 Score=26.71 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=45.9
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCc---EEEEecccccCCCHHHHHHHHh-----ccCcEEEEecCCcCCC
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVS---CEVIDLVSILPWDRETVFQSAR-----KTGRVIIAHEAPLTSG 269 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~---~~vi~~~~l~P~d~~~l~~~~~-----~~~~vivvEe~~~~gg 269 (325)
..+++|++.+ +....|.+|.+.|++. |+. ...+++.. +.+ +++.++ .+=..|++... ..||
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-gv~~~~~~~~dv~~----~~~-~~~~l~~~sg~~tvP~vfI~g~-~iGG 87 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-GVDPAKFAAYNVLE----DPE-LREGIKEFSEWPTIPQLYVNKE-FIGG 87 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHH-TBCGGGEEEEECTT----CHH-HHHHHHHHHTCCSSCEEEETTE-EEES
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHc-CCCcceEEEEEecC----CHH-HHHHHHHHhCCCCCCeEEECCE-EEec
Confidence 4679999998 4788999999999998 998 88888764 332 333332 22357888765 4588
Q ss_pred hHHH
Q psy8699 270 FGAE 273 (325)
Q Consensus 270 lg~~ 273 (325)
+...
T Consensus 88 ~d~l 91 (121)
T 3gx8_A 88 CDVI 91 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 107
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=46.39 E-value=89 Score=31.09 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=52.4
Q ss_pred HcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEecccc-cccccccCCCCCC--ccc---CCCceeEeeeCCcEEEEEe
Q psy8699 137 FAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKV-LYRAAVEDVPEDY--YEL---PLDKADILVAGTDVTLIGW 210 (325)
Q Consensus 137 ~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~~~~~-l~~~~~~~~~~~~--~~~---~~gk~~~~~~g~dv~ii~~ 210 (325)
++.+|.. |+.|.|.+|+.+++++|-+++-|++.+---. +.....+...... ..+ .+++..-+.+...++.|--
T Consensus 202 ~~~~P~a-VV~P~s~eeV~~iv~~A~~~~ipVvprGgGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVea 280 (658)
T 4bby_A 202 FERIPDI-VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEA 280 (658)
T ss_dssp CSCCCSE-EEECCSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEET
T ss_pred ccCCcCE-EEeeCCHHHHHHHHHHHHHCCCeEEEECCCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEec
Confidence 4457876 8999999999999999999999999853211 1111111100000 111 1333223445667888999
Q ss_pred chhHHHHHHHHH
Q psy8699 211 GTQVHVLREVAG 222 (325)
Q Consensus 211 G~~~~~a~~A~~ 222 (325)
|.....+.++++
T Consensus 281 Gv~~~~L~~~L~ 292 (658)
T 4bby_A 281 GITGQELERQLK 292 (658)
T ss_dssp TCBHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 988887766543
No 108
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=46.18 E-value=1.1e+02 Score=30.44 Aligned_cols=89 Identities=8% Similarity=0.011 Sum_probs=51.3
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCC--CCChhHHHHHcCCCCcEEE-ee
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGAL--YHSQSPEAYFAHTPGIKVV-IP 148 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~t--h~~~~d~~~~~~ip~~~v~-~P 148 (325)
+.++++ .++.. + ..++.+. .++..++++. ++ ++.-...+.. +.+ ....+....+++. |+.++ .-
T Consensus 149 ~~v~~~-~GDG~~~eG~~~Eal~-~A~~~~L~~l-i~----i~d~N~~~i~--~~~~~~~~~d~~~~~~a~-G~~~~~~v 218 (673)
T 1r9j_A 149 HYTYVY-CGDGCLMEGVCQEALS-LAGHLALEKL-IV----IYDSNYISID--GSTSLSFTEQCHQKYVAM-GFHVIEVK 218 (673)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHHH-HHHHHTCTTE-EE----EEEECSBCSS--SBGGGTCCCCHHHHHHHT-TCEEEEES
T ss_pred CEEEEE-ECcchhcccHHHHHHH-HHHHhCCCcE-EE----EEECCCCccc--cchhhccCHhHHHHHHHC-CCeEEEEe
Confidence 445553 67763 4 4577764 6776666542 11 1111211222 222 1222223466665 88888 33
Q ss_pred ---CCHHHHHHHHHHhHh-CCCcEEEecc
Q psy8699 149 ---RGPYKAKGLLLSCIK-DKDPCIFFEP 173 (325)
Q Consensus 149 ---~~~~e~~~~~~~a~~-~~~Pv~i~~~ 173 (325)
.|..++..+++.|.+ .++|++|...
T Consensus 219 dG~~d~~~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 219 NGDTDYEGLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp CTTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 688999999999987 6899998654
No 109
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=46.17 E-value=35 Score=25.64 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHH--HHHHHH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAE--LAASIQ 279 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~--v~~~l~ 279 (325)
|++-..|...++.+++. |.+++++++... |.+. +.+++.+++.=.- ..++.... +..++.
T Consensus 11 GnT~~~a~~i~~~l~~~-g~~v~~~~~~~~---~~~~----l~~~d~vi~g~p~-y~~~~~~~~~~~~fl~ 72 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAA-GADVESVRFEDT---NVDD----VASKDVILLGCPA-MGSEELEDSVVEPFFT 72 (137)
T ss_dssp SHHHHHHHHHHHHHHHT-TCCEEEEETTSC---CHHH----HHTCSEEEEECCC-BTTTBCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhC-CCeEEEEEcccC---CHHH----HhcCCEEEEEccc-cCCCCCCHHHHHHHHH
Confidence 44445566666667776 899999987654 3232 4566776666433 34554333 555544
No 110
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=45.72 E-value=84 Score=31.41 Aligned_cols=90 Identities=10% Similarity=0.044 Sum_probs=50.7
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCCCChhHHHHHcCCCCcEEEeeC-
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQSPEAYFAHTPGIKVVIPR- 149 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~~d~~~~~~ip~~~v~~P~- 149 (325)
+.++++ .++.. + ..++.+. .++..++++. +. ++.-...+..+. +. ....+....+.+. |+.++.+.
T Consensus 160 ~~v~~i-~GDG~~~eG~~~Eal~-~A~~~~L~~l--i~---i~~nN~~~i~~~~~~-~~~~d~~~~~~a~-G~~~~~~vd 230 (675)
T 1itz_A 160 HYTYVI-LGDGCQMEGIANEACS-LAGHWGLGKL--IA---FYDDNHISIDGDTEI-AFTEDVSTRFEAL-GWHTIWVKN 230 (675)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHHH-HHHHTTCTTE--EE---EEEECSEETTEEGGG-TCCSCHHHHHHHT-TCEEEEESC
T ss_pred CEEEEE-ECHhHhchhHHHHHHH-HHHHhCCCcE--EE---EEECCCccCCCChhh-hcChhHHHHHHhC-CCEEEEEec
Confidence 445553 67764 4 5677774 6776665432 11 111111121121 11 2222333566666 88887443
Q ss_pred ---CHHHHHHHHHHhHh-CCCcEEEecc
Q psy8699 150 ---GPYKAKGLLLSCIK-DKDPCIFFEP 173 (325)
Q Consensus 150 ---~~~e~~~~~~~a~~-~~~Pv~i~~~ 173 (325)
|..++..+++.|.+ .++|++|-..
T Consensus 231 G~~d~~~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 231 GNTGYDDIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp TTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCeEEEEEe
Confidence 78899999999987 5899998653
No 111
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=45.69 E-value=37 Score=33.28 Aligned_cols=113 Identities=8% Similarity=0.051 Sum_probs=61.4
Q ss_pred CCceeec---hhhHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEec-cCccC
Q psy8699 49 KHRVFNT---PLSEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA-PCMAV 122 (325)
Q Consensus 49 p~r~~~~---gIaE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~-~~g~~ 122 (325)
|.+|+.. |.- -..+..|.|++++ .-++++++ .++.. +..++.|. .+...+++.. . +++-. ..+..
T Consensus 403 ~~~~~~~~~~g~m-G~~l~~AiGaala~~~~~vv~i-~GDG~~~~~~~~L~-ta~~~~l~~~---i---vv~NN~~~~~~ 473 (590)
T 1v5e_A 403 KNMWRTSPLFATM-GIAIPGGLGAKNTYPDRQVWNI-IGDGAFSMTYPDVV-TNVRYNMPVI---N---VVFSNTEYAFI 473 (590)
T ss_dssp TSEEECCCSSCCT-TCHHHHHHHHHHHCTTSCEEEE-EEHHHHHHHGGGHH-HHHHTTCCCE---E---EEEECSSCTTG
T ss_pred CCeEEcCCCCCcc-cChHHHHHHHHHhCCCCeEEEE-EechHHhchHHHHH-HHHHhCCCCE---E---EEEECCchHHH
Confidence 5667642 211 2456777887765 34566664 67743 34455553 4555555432 1 11111 11111
Q ss_pred CC--CC-------C-CCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEEe
Q psy8699 123 GH--GA-------L-YHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKD---KDPCIFF 171 (325)
Q Consensus 123 g~--g~-------t-h~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~---~~Pv~i~ 171 (325)
+. .. + .+..+...+.... |+..+...+.+|+...++++++. ++|++|-
T Consensus 474 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~gp~lie 534 (590)
T 1v5e_A 474 KNKYEDTNKNLFGVDFTDVDYAKIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVID 534 (590)
T ss_dssp GGTTSSSCCSCCCCCCCCCCHHHHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhcCCCccccCCCCCHHHHHHHc-CCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 10 00 1 1112223344444 67777778999999999999987 8999883
No 112
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=45.44 E-value=29 Score=24.19 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=41.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH----HHHHHHHh-ccCcEEEEecCCcCCChHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR----ETVFQSAR-KTGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~----~~l~~~~~-~~~~vivvEe~~~~gglg~ 272 (325)
+++|++. +....|.+|...|++. |++...+++....+-+. +.+.+... .+=.+++++.. ..+|+..
T Consensus 13 ~v~ly~~-~~Cp~C~~~~~~L~~~-gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~-~i~G~~~ 83 (92)
T 3ic4_A 13 EVLMYGL-STCPHCKRTLEFLKRE-GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDK-HVLGYNE 83 (92)
T ss_dssp SSEEEEC-TTCHHHHHHHHHHHHH-TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTE-EEESCCH
T ss_pred eEEEEEC-CCChHHHHHHHHHHHc-CCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCE-EEeCCCH
Confidence 4666654 5678889999999998 99999999886544222 22322222 12256777543 5577643
No 113
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=45.37 E-value=38 Score=33.02 Aligned_cols=29 Identities=7% Similarity=-0.104 Sum_probs=26.5
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 142 GIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 142 ~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
|+.-+...+.+|+...++++++.++|++|
T Consensus 526 G~~~~~v~~~~el~~al~~a~~~~gp~li 554 (578)
T 3lq1_A 526 DADYHEAKSVDELEEAIDKASYHKGLDII 554 (578)
T ss_dssp TCEEEECCSHHHHHHHHHHHTTSSSEEEE
T ss_pred CCceEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 67778889999999999999999999999
No 114
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=45.29 E-value=21 Score=35.22 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=64.1
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC
Q psy8699 49 KHRVFNTPL-S-EQGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG 123 (325)
Q Consensus 49 p~r~~~~gI-a-E~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g 123 (325)
|.+|++.|- . --..++.|.|+|++. -++++++ .++.. +..+..|. .++..+++.. . +++-.. .+...
T Consensus 432 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i-~GDGs~~~~~~~L~-ta~~~~l~~~---i---vv~NN~~~~~~~ 503 (616)
T 2pan_A 432 DRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAI-SGDFDFQFLIEELA-VGAQFNIPYI---H---VLVNNAYLGLIR 503 (616)
T ss_dssp TTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEE-EEHHHHHHTGGGHH-HHHHTTCCCE---E---EEEECSBCHHHH
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhCCHHHHH-HHHHhCCCeE---E---EEEECCcchHHH
Confidence 567888653 1 223777888888763 4666664 67743 33455554 4555555432 1 111111 11100
Q ss_pred ------CC---------CCCC------ChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEe
Q psy8699 124 ------HG---------ALYH------SQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFF 171 (325)
Q Consensus 124 ------~g---------~th~------~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~ 171 (325)
.+ .+.. ..+...+.+.+ |+..+...+..|+..+++++++ .++|++|-
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIe 575 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVE 575 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHT-TCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 00 0101 12222344444 6777777899999999999998 78999883
No 115
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=44.57 E-value=49 Score=26.54 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=38.5
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh--ccCcEEEEecC
Q psy8699 204 DVTLIGWGTQVH----VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR--KTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~~~~----~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~--~~~~vivvEe~ 264 (325)
+++|+++|+... .-..+++.|++.+--++++++..+.-+ +.+ ..+. +.+++|+||--
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~---~l~-~~l~~~~~d~lIiVDA~ 67 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE---NDI-VAIRELRPTRLLIVDAT 67 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSG---GGH-HHHHHHCCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHH---HHH-HHHhcCCCCEEEEEEeC
Confidence 468999998753 466778888765223588999998643 222 3333 46899999874
No 116
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.75 E-value=39 Score=25.02 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=40.4
Q ss_pred cEEEEEechhHHHHH------HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc------------CcEEEEecCC
Q psy8699 204 DVTLIGWGTQVHVLR------EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT------------GRVIIAHEAP 265 (325)
Q Consensus 204 dv~ii~~G~~~~~a~------~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~------------~~vivvEe~~ 265 (325)
+++|++. +....+. +|.+.|++. |+....+++.. +.+...++.+.. =..|+++..
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~-gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~- 81 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEAN-KIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR- 81 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHT-TCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE-
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHc-CCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCE-
Confidence 5667665 4445566 788899988 99999999986 333222222221 257888776
Q ss_pred cCCChHH
Q psy8699 266 LTSGFGA 272 (325)
Q Consensus 266 ~~gglg~ 272 (325)
..||+-.
T Consensus 82 ~iGG~d~ 88 (111)
T 2ct6_A 82 YCGDYDS 88 (111)
T ss_dssp EEEEHHH
T ss_pred EEeCHHH
Confidence 4588764
No 117
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=43.64 E-value=61 Score=26.49 Aligned_cols=64 Identities=2% Similarity=0.022 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccccCCC----------HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSILPWD----------RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d----------~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
...+..+++.++ . |.+++++++..+-.++ .+.+.+.+...+.+|+.=-- +.+++...+-.++..
T Consensus 19 ~~la~~~~~~~~-~-~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~-y~~~~p~~lK~~iD~ 92 (192)
T 3fvw_A 19 RQLAKKAETIIG-D-RAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPV-YNYAIPGPVKNLLDW 92 (192)
T ss_dssp HHHHHHHHHHHT-T-SSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCC-BTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC-C-CCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcc-cccCCCHHHHHHHHH
Confidence 344555566665 5 8899999998642222 24566778888887777555 578888777777643
No 118
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=43.28 E-value=26 Score=28.26 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=40.6
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhhcC--CcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 204 DVTLIGWGTQV----HVLREVAGLAKEQLG--VSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~~~----~~a~~A~~~L~~~~g--i~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
+++|+++|+.. ..-..+++.|++.+. -++++++..+.-+ + +...+.+++++|+||--
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~p~~v~vid~gt~~~---~-l~~~l~~~d~lIiVDA~ 64 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGM---E-LLGDMANRDHLIIADAI 64 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEECCTTEEEEEEETCCG---G-GHHHHSSCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCCCCeEEEECCCCHH---H-HHHHHhCCCEEEEEEeh
Confidence 57899999875 246677888876423 3689999998632 2 23556778999999974
No 119
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=43.15 E-value=21 Score=34.78 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=61.9
Q ss_pred CCceeech-hhH-HHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--C
Q psy8699 49 KHRVFNTP-LSE-QGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--V 122 (325)
Q Consensus 49 p~r~~~~g-IaE-~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~ 122 (325)
|.+|+..+ ..- -..++.|.|+|++. -++++++ .++.. +..++.|. .+...+++.. +++..-.+. .
T Consensus 426 ~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i-~GDG~~~~~~~~L~-~a~~~~l~~~-------ivv~NN~~~~~~ 496 (573)
T 2iht_A 426 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLI-AGDGGFHSNSSDLE-TIARLNLPIV-------TVVVNNDTNGLI 496 (573)
T ss_dssp TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEE-EEHHHHHHTGGGHH-HHHHHTCCCE-------EEEEECSBCHHH
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-EccHHHHhHHHHHH-HHHHhCCCeE-------EEEEECCcchhh
Confidence 56677642 111 13667888888763 3566664 67743 33444443 4555454431 112211111 1
Q ss_pred CC------CC-----CCCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 123 GH------GA-----LYHSQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 123 g~------g~-----th~~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
+. +. +.....|. .+...+ |+..+...+.+|+...++++++.++|++|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 555 (573)
T 2iht_A 497 ELYQNIGHHRSHDPAVKFGGVDFVALAEAN-GVDATRATNREELLAALRKGAELGRPFLI 555 (573)
T ss_dssp HHHHHHHHSSCCGGGTBCCCCCHHHHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEE
T ss_pred HHHHHHhcCCCcCccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 10 00 11111233 344444 77777889999999999999998999998
No 120
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=42.80 E-value=62 Score=26.40 Aligned_cols=85 Identities=12% Similarity=-0.033 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhHhCCCcEEEecccccccccccCCCCCCcccC-CCc---eeEeeeCCcEEEEEechhHHHHHHHHHHHHh
Q psy8699 151 PYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELP-LDK---ADILVAGTDVTLIGWGTQVHVLREVAGLAKE 226 (325)
Q Consensus 151 ~~e~~~~~~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~gk---~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~ 226 (325)
-+++.+++-+|+..++-+|++-.....--..+..+. ...++ .++ ...++++..+.|+|....-..+.+.+..+++
T Consensus 24 I~~AA~llaqai~~~g~IyvfG~Ghs~~~~~e~~~~-~e~l~~~~~~~~~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake 102 (170)
T 3jx9_A 24 LFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDG-PDQMKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDA 102 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTS-TTCCTTEEECCTTCCCCTTCEEEEEESCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcHHHHHHHHHcc-cCCccchhhhhhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477888999999999999985321100000000000 00110 000 1134566667777777777789999999999
Q ss_pred hcCCcEEEEec
Q psy8699 227 QLGVSCEVIDL 237 (325)
Q Consensus 227 ~~gi~~~vi~~ 237 (325)
+ |+.+-.|.-
T Consensus 103 ~-G~~vIaITs 112 (170)
T 3jx9_A 103 W-HTPYSIITL 112 (170)
T ss_dssp H-TCCEEEEES
T ss_pred C-CCcEEEEeC
Confidence 9 877654443
No 121
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=42.54 E-value=82 Score=28.66 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=45.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccc-------------cCCCHHHHHHHHhccCcEEEEecCCcC
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSI-------------LPWDRETVFQSARKTGRVIIAHEAPLT 267 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l-------------~P~d~~~l~~~~~~~~~vivvEe~~~~ 267 (325)
++.++.|++.|.....+.+ .+++. |+++-+++...- ...|.+.+.+.+++.+ +|+.|-...
T Consensus 13 ~~k~IlIlG~G~~g~~la~---aa~~~-G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~d-vI~~~~e~~- 86 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMAL---AAKEM-GYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISD-VVTYEFENI- 86 (389)
T ss_dssp TTSEEEEECCSHHHHHHHH---HHHHT-TCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCS-EEEESCCCC-
T ss_pred CCCEEEEECCCHHHHHHHH---HHHHc-CCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCC-Eeeeccccc-
Confidence 5678999999986554444 44455 999999986421 3456677888887765 667765433
Q ss_pred CChHHHHHHHHHhh
Q psy8699 268 SGFGAELAASIQDK 281 (325)
Q Consensus 268 gglg~~v~~~l~e~ 281 (325)
...+++.+.+.
T Consensus 87 ---~~~~~~~l~~~ 97 (389)
T 3q2o_A 87 ---DYRCLQWLEKH 97 (389)
T ss_dssp ---CHHHHHHHHHH
T ss_pred ---cHHHHHHHHhh
Confidence 33444555544
No 122
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=42.53 E-value=85 Score=31.40 Aligned_cols=89 Identities=8% Similarity=-0.066 Sum_probs=49.6
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCC-CChhHH-HHHcCCCCcEEEeeC
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALY-HSQSPE-AYFAHTPGIKVVIPR 149 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th-~~~~d~-~~~~~ip~~~v~~P~ 149 (325)
+.++++ .++.. + ..++.+. .++..++++. ++ ++.-...+.. +.+. ....|+ ..+... |+.++.+.
T Consensus 149 ~~vv~i-~GDG~~~eG~~~Eal~-~A~~~~L~~l-i~----i~~nN~~~i~--~~~~~~~~~d~~~~~~a~-G~~~~~~v 218 (680)
T 1gpu_A 149 NYTYVF-LGDGCLQEGISSEASS-LAGHLKLGNL-IA----IYDDNKITID--GATSISFDEDVAKRYEAY-GWEVLYVE 218 (680)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHHH-HHHHTTCTTE-EE----EEEECSEETT--EEGGGTCCCCHHHHHHHH-TCEEEEES
T ss_pred CeEEEE-ECCCccchhhHHHHHH-HHHHhCCCcE-EE----EEECCCceEe--cccccccCccHHHHHHhc-CCeEEEEe
Confidence 445553 67764 4 5667764 6776666542 11 1111111111 1111 112233 455555 88887343
Q ss_pred ----CHHHHHHHHHHhHh-CCCcEEEecc
Q psy8699 150 ----GPYKAKGLLLSCIK-DKDPCIFFEP 173 (325)
Q Consensus 150 ----~~~e~~~~~~~a~~-~~~Pv~i~~~ 173 (325)
|..++..+++.|.+ .++|++|-..
T Consensus 219 dG~~d~~~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 219 NGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp CTTTCHHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 78899999999988 6899988643
No 123
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=42.05 E-value=8.4 Score=29.87 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=28.5
Q ss_pred eeeCCcEEEEEechhHH--HHHHHHHHHHhhcCCcEEEEec
Q psy8699 199 LVAGTDVTLIGWGTQVH--VLREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 199 ~~~g~dv~ii~~G~~~~--~a~~A~~~L~~~~gi~~~vi~~ 237 (325)
+.++.+++||++|.... .--+..+.|++. ||.+++.+-
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~-gI~ve~m~T 97 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKH-GIDVRVLQT 97 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHT-TCEEEEECH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHc-CCEEEEeCH
Confidence 44568999999998665 345566778888 999987743
No 124
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=41.82 E-value=1e+02 Score=30.66 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=49.5
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCC--CChhHHHHHcCCCCcEEE-e-
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALY--HSQSPEAYFAHTPGIKVV-I- 147 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th--~~~~d~~~~~~ip~~~v~-~- 147 (325)
+.++++ .++.. + ..++.+. .++..++++. +. ++.-...+.. +.+. .+.+....++.. |+.++ .
T Consensus 147 ~~v~~~-~GDG~~~eG~~~Eal~-~A~~~~L~~l--i~---i~~nN~~~i~--~~~~~~~~~d~~~~~~a~-G~~~~~~v 216 (669)
T 2r8o_A 147 HYTYAF-MGDGCMMEGISHEVCS-LAGTLKLGKL--IA---FYDDNGISID--GHVEGWFTDDTAMRFEAY-GWHVIRDI 216 (669)
T ss_dssp CCEEEE-ECHHHHHSHHHHHHHH-HHHHTTCTTE--EE---EEEECSEETT--EEGGGTCCCCHHHHHHHT-TCEEEEEE
T ss_pred CeEEEE-ECHhHhcchHHHHHHH-HHHHcCCCcE--EE---EEECCCcEec--cccccccCccHHHHHHHC-CCeEEeEE
Confidence 445553 67764 4 5677764 6776666542 11 1111111111 1111 122223466665 77776 2
Q ss_pred -eCCHHHHHHHHHHhHh-CCCcEEEec
Q psy8699 148 -PRGPYKAKGLLLSCIK-DKDPCIFFE 172 (325)
Q Consensus 148 -P~~~~e~~~~~~~a~~-~~~Pv~i~~ 172 (325)
-.|..++..+++.+.+ .++|++|-.
T Consensus 217 dG~d~~~l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 217 DGHDAASIKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp ETTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2379999999999988 689998854
No 125
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=41.72 E-value=66 Score=24.62 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=37.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT 255 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~ 255 (325)
++|.+. +.+..|.+|.+.|++. |++..++++.. .|...+.+.+.+++.
T Consensus 3 i~lY~~-~~C~~C~ka~~~L~~~-gi~y~~~di~~-~~~~~~el~~~l~~~ 50 (132)
T 1z3e_A 3 VTLYTS-PSCTSCRKARAWLEEH-EIPFVERNIFS-EPLSIDEIKQILRMT 50 (132)
T ss_dssp EEEEEC-TTCHHHHHHHHHHHHT-TCCEEEEETTT-SCCCHHHHHHHHHTC
T ss_pred EEEEeC-CCChHHHHHHHHHHHc-CCceEEEEccC-CCccHHHHHHHHHHc
Confidence 445443 6678999999999998 99999999976 577788888877643
No 126
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=41.55 E-value=43 Score=26.01 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=37.7
Q ss_pred CCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCC-CHHHHHH
Q psy8699 193 LDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPW-DRETVFQ 250 (325)
Q Consensus 193 ~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~-d~~~l~~ 250 (325)
+|+.....+..++++|+-|+-....+-.++.|.+. |.++.++..++-.-+ -.+.|.+
T Consensus 9 ~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~-~~~v~l~g~R~~~~~~~~~el~~ 66 (142)
T 3lyu_A 9 LGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEI-GNDVTTLHVTFEPMVILKEELEK 66 (142)
T ss_dssp CSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHT-TCEEEEEEEEEGGGCCSHHHHHT
T ss_pred CCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhc-CCcEEEEEeCCHHHhhHHHHHHH
Confidence 44433232346899999999999888888888777 878888744443322 2344544
No 127
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=41.36 E-value=44 Score=32.10 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=61.0
Q ss_pred CCceeechh-hHHHHHHHHHHHhcc-CCeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEecc-CccCC-
Q psy8699 49 KHRVFNTPL-SEQGIVGFGIGLAVS-GATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAP-CMAVG- 123 (325)
Q Consensus 49 p~r~~~~gI-aE~~~v~~a~GlA~~-G~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~-~g~~g- 123 (325)
|.+|+..+- +=-..++.|.|++++ .-++++++ .++.. +..++.|. .+...+++.. . +++-.. .+..+
T Consensus 392 ~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~-~GDG~~~~~~~~l~-~a~~~~l~~~---i---vv~nN~~~~~~~~ 463 (528)
T 1q6z_A 392 PGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAV-IGDGSANYSISALW-TAAQYNIPTI---F---VIMNNGTYGALRW 463 (528)
T ss_dssp SSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEE-EEHHHHTTTGGGHH-HHHHHTCCCE---E---EEEECSBCHHHHH
T ss_pred CCcEECCCCccccchHHHHHHHHHhCCCCcEEEE-ECCcHHHhhHHHHH-HHHHhCCCeE---E---EEEeCCcchHhHH
Confidence 456665321 111456677887765 34666664 67743 33355554 4555455432 1 111111 11110
Q ss_pred -----C-----CCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 124 -----H-----GALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 124 -----~-----g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. +...+..+...+...+ |+..+...+.+|+...++++++.++|++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 519 (528)
T 1q6z_A 464 FAGVLEAENVPGLDVPGIDFRALAKGY-GVQALKADNLEQLKGSLQEALSAKGPVLI 519 (528)
T ss_dssp HHHHHTCCSCCSCBCCCCCHHHHHHHH-TCEEEEESSHHHHHHHHHHHHTCSSCEEE
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCcEEE
Confidence 0 1111222223344444 67777788999999999999998999998
No 128
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=41.25 E-value=67 Score=25.90 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHh-hcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 211 GTQVHVLREVAGLAKE-QLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~-~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
|++-..|...++.|++ . |++++++++.... .+ .+.+++.||+.=-- +.|++...+..++..
T Consensus 16 GnT~~~a~~i~~~l~~~~-g~~v~~~~l~~~~---~~----~l~~aD~ii~gsP~-y~g~~~~~lk~fld~ 77 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLE-GTEVRLKHVDEAT---KE----DVLWADGLAVGSPT-NMGLVSWKMKRFFDD 77 (188)
T ss_dssp SHHHHHHHHHHHHHHTST-TEEEEEEETTTCC---HH----HHHHCSEEEEEEEC-BTTBCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcC-CCeEEEEEhhhCC---HH----HHHhCCEEEEEeCc-cCCcCCHHHHHHHHH
Confidence 4444556666677776 7 8889988876642 22 23445555555443 356666666665543
No 129
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=41.04 E-value=51 Score=27.29 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhcCCcEE-EEecccccCCC-----------HHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 216 VLREVAGLAKEQLGVSCE-VIDLVSILPWD-----------RETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 216 ~a~~A~~~L~~~~gi~~~-vi~~~~l~P~d-----------~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
.+..+++.++ + |.+++ ++++.-+-.++ .+.+.+.++..+.+|++=-- +++++...+-.++.
T Consensus 25 la~~~~~~~~-~-g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~-Y~~s~p~~LK~~iD 97 (199)
T 4hs4_A 25 VARALPEIAP-E-GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPE-YNYSVPGVLKNAID 97 (199)
T ss_dssp HHHHHHHHCC-T-TEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECC-BTTBCCHHHHHHHH
T ss_pred HHHHHHHHcc-C-CCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCc-cCCCcCHHHHHHHH
Confidence 3444445553 5 78888 88887652222 23466677788888777665 56777777666654
No 130
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=40.85 E-value=11 Score=37.26 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=25.3
Q ss_pred CcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 142 GIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 142 ~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
|+..+...+.+|+..+++++++.++|++|
T Consensus 546 G~~~~~v~~~~el~~al~~a~~~~gp~li 574 (604)
T 2x7j_A 546 GGTYSCPASWDEFKTAYAPQADKPGLHLI 574 (604)
T ss_dssp TCEEECCSSHHHHHHHCCCCCSSCCEEEE
T ss_pred CCeEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 77888889999999988888878889988
No 131
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=40.47 E-value=1.2e+02 Score=24.14 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHHHhhcC--CcEEEEecccc--cCCC------------------------HHHHHHHHhccCcEEEEe
Q psy8699 211 GTQVHVLREVAGLAKEQLG--VSCEVIDLVSI--LPWD------------------------RETVFQSARKTGRVIIAH 262 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~g--i~~~vi~~~~l--~P~d------------------------~~~l~~~~~~~~~vivvE 262 (325)
|.+...+...++.+++. | .+++++++... .+++ .+.+.+.+..++.||+.=
T Consensus 16 s~t~~la~~~~~~l~~~-g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~ 94 (201)
T 1t5b_A 16 SQSGQLTDYFIEQWREK-HVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAA 94 (201)
T ss_dssp CHHHHHHHHHHHHHHHH-CTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred ChHHHHHHHHHHHHHHh-CCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 33444555667778776 6 88999998764 2232 123455667788777775
Q ss_pred cCCcCCChHHHHHHHHHh
Q psy8699 263 EAPLTSGFGAELAASIQD 280 (325)
Q Consensus 263 e~~~~gglg~~v~~~l~e 280 (325)
-- +.+++...+..++..
T Consensus 95 P~-y~~~~p~~lK~~iD~ 111 (201)
T 1t5b_A 95 PM-YNFNIPTQLKNYFDL 111 (201)
T ss_dssp CC-BTTBCCHHHHHHHHH
T ss_pred Cc-ccCcCCHHHHHHHHH
Confidence 54 578888888777754
No 132
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=40.37 E-value=56 Score=25.06 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=39.8
Q ss_pred echhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-ccCcEEEEecCCcC--CChHHHHHHHHHh
Q psy8699 210 WGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLT--SGFGAELAASIQD 280 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-~~~~vivvEe~~~~--gglg~~v~~~l~e 280 (325)
+|++-..|...++.|++. |+++.++++....+-+ +. +++.+++.=.-+-. |.+...+..++..
T Consensus 12 tGnT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~~~-------l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~ 77 (148)
T 3f6r_A 12 TGNTESIAQKLEELIAAG-GHEVTLLNAADASAEN-------LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEE 77 (148)
T ss_dssp SSHHHHHHHHHHHHHHTT-TCEEEEEETTTBCCTT-------TTTTCSEEEEEECEECSSSCEECHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHhC-CCeEEEEehhhCCHhH-------hcccCCEEEEEecccCCCCCCCcHHHHHHHHH
Confidence 355555666667777777 9999999988764422 23 56666666443222 5666667666643
No 133
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=39.96 E-value=30 Score=25.16 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=43.5
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCChHH
Q psy8699 203 TDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSGFGA 272 (325)
Q Consensus 203 ~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gglg~ 272 (325)
.+++|++.| +....|.+|.+.|++. |++...+++..- |--.+.+.+.... +=..++++.. ..||+..
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~-~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~-~igg~d~ 88 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNST-GVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGE-LVGGLDI 88 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHH-TCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTE-EEECHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHC-CCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCE-EEeChHH
Confidence 468888776 6778899999999998 999999998762 2111223332222 2246666554 5688764
No 134
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=39.59 E-value=12 Score=30.13 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~ 265 (325)
.|++.|++. ||+.+ ... ++++.+. +...+-||++++++
T Consensus 61 ~a~~~l~~~-Gid~s-~~a---r~l~~~~----~~~~DlIl~M~~~~ 98 (161)
T 1d1q_A 61 RTVSICKQH-GVKIN-HKG---KQIKTKH----FDEYDYIIGMDESN 98 (161)
T ss_dssp HHHHHHHHT-TCCCC-CCB---CBCCGGG----GGTCSEEEESSHHH
T ss_pred HHHHHHHHc-CcCCC-ceE---eECCHHH----HhhCCEEEEeCHHH
Confidence 345556666 88775 333 3344332 35678889987753
No 135
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=39.18 E-value=1.4e+02 Score=23.46 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=62.9
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCC--HHHHHHHHhcc---CcEEEEecCCcCCChHHHHHHHH
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWD--RETVFQSARKT---GRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d--~~~l~~~~~~~---~~vivvEe~~~~gglg~~v~~~l 278 (325)
.++|++.|......+++++.+--+ -..+..+++..=...+ .+.+.+.+++. +.|+++=+= .||--..++..+
T Consensus 3 giii~sHg~~A~gl~~~~~~i~G~-~~~i~av~~~~~~~~~~~~~~i~~~i~~~~~~~gvlvLtDl--~GGSp~n~a~~~ 79 (150)
T 3ipr_A 3 GIVIATHGALSDGAKDAATVIMGA-TENIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLVMVDL--LSASPYNQAVLV 79 (150)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHSC-CCSEEEEEECTTCCHHHHHHHHHHHHHHHCSSSCEEEEESS--TTSHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHHHHcCC-CCCEEEEEecCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeC--CCCCHHHHHHHH
Confidence 478999999888999999987533 2467777776433222 13455555543 457777553 477666665555
Q ss_pred HhhccccCCCCeEEEcccCCCCc-ccc-cc-cCCCCHHHHHHHHH
Q psy8699 279 QDKCFLSLEAPIRRVTGYDTPFP-HIF-EP-FYIPDKWRCLEAVK 320 (325)
Q Consensus 279 ~e~~~~~~~~~v~~~~g~~~~~~-~~~-~~-~~l~~~~~I~~~i~ 320 (325)
..........++.-++|.+-|.- +++ .. .+. +.+.+++.+.
T Consensus 80 ~~~~~~~~~~~v~vI~GvNLpmlle~~~~r~~~~-~l~el~~~~~ 123 (150)
T 3ipr_A 80 INELEPALQKKIFVVSGTNLPMVLEAINHQLLGT-PIAEAAQAIV 123 (150)
T ss_dssp HTTSCHHHHTTEEEEESCCHHHHHHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHhhhhccCCCEEEEeCCCHHHHHHHHHhhhcCC-CHHHHHHHHH
Confidence 43200000135666778764321 221 12 233 5666665554
No 136
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=38.97 E-value=54 Score=25.05 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-cCcEEEEecCCcCCC--hHHHHHHHHH
Q psy8699 211 GTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-TGRVIIAHEAPLTSG--FGAELAASIQ 279 (325)
Q Consensus 211 G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-~~~vivvEe~~~~gg--lg~~v~~~l~ 279 (325)
|++-..|...++.|++. |+++.++++....|-+ +.+ ++.+++.=.-+-.|- +...+..++.
T Consensus 12 Gnt~~~a~~i~~~l~~~-g~~v~~~~~~~~~~~~-------l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~ 75 (147)
T 1f4p_A 12 GNTEYTAETIARELADA-GYEVDSRDAASVEAGG-------LFEGFDLVLLGCSTWGDDSIELQDDFIPLFD 75 (147)
T ss_dssp SHHHHHHHHHHHHHHHH-TCEEEEEEGGGCCSTT-------TTTTCSEEEEEECEECSSSCEECTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCeeEEEehhhCCHHH-------hcCcCCEEEEEeCCCCCCCcCCChhHHHHHH
Confidence 44445566666677777 9999999988765422 345 676666644321233 3444555543
No 137
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=38.95 E-value=26 Score=26.64 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=38.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC
Q psy8699 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG 256 (325)
Q Consensus 205 v~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~ 256 (325)
++|.+. +.+..|.+|.+.|++. |+..+++++.. .|.+.+.|.+.+++.+
T Consensus 6 i~iY~~-p~C~~c~ka~~~L~~~-gi~~~~~di~~-~~~t~~eL~~~l~~~g 54 (119)
T 3f0i_A 6 VVIYHN-PKCSKSRETLALLENQ-GIAPQVIKYLE-TSPSVEELKRLYQQLG 54 (119)
T ss_dssp CEEECC-TTCHHHHHHHHHHHHT-TCCCEEECHHH-HCCCHHHHHHHHHHHT
T ss_pred EEEEEC-CCChHHHHHHHHHHHc-CCceEEEEecc-CcCcHHHHHHHHHHcC
Confidence 344433 5677899999999998 99999999977 5788888888777654
No 138
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=38.73 E-value=42 Score=26.66 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCC-eEEEcccCC
Q psy8699 220 VAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAP-IRRVTGYDT 298 (325)
Q Consensus 220 A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~-v~~~~g~~~ 298 (325)
|++.|++. ||+.. -..-++++.+.+ ...+-||+++++...- +.. .+.+ +... .+++
T Consensus 66 a~~vl~e~-Gidis---~h~ar~l~~~~~----~~~DlIitM~~~~~~~---------~p~-----~~~k~~~~w-~VpD 122 (148)
T 3rh0_A 66 SVESIAEV-GADMS---QGIPKAIDPELL----RTVDRVVILGDDAQVD---------MPE-----SAQGALERW-SIEE 122 (148)
T ss_dssp HHHHHHHT-TCCCT---TCCCCBCCHHHH----HHCSEEEEESSSCCCC---------CCT-----TCCSEEEEE-CCCC
T ss_pred HHHHHHHc-CCCcC---CCeeeECCHHHh----cCCCEEEEecChHHhh---------Ccc-----CCCCEeecC-CcCC
Confidence 44556666 88753 234567776644 4678999998754321 110 1112 2233 6788
Q ss_pred CCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 299 PFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 299 ~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
||..-.+.|.- .-+.|.++++++++
T Consensus 123 Py~~~~~~F~~-v~d~I~~~v~~Ll~ 147 (148)
T 3rh0_A 123 PDAQGMERMRI-VRDQIDNRVQALLA 147 (148)
T ss_dssp CSCCHHHHHHH-HHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHh
Confidence 87643444444 56777777777764
No 139
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=38.61 E-value=42 Score=25.57 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT 298 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~ 298 (325)
.|++.|++. ||+ .-...+.+.+.+ +...+.||+++++ ... ... ........+ .+++
T Consensus 43 ~a~~~l~e~-Gid-s~~~sr~l~~~~-------~~~~D~Ii~m~~~-~~~----------p~~---~~~~~~~~~-~i~D 98 (124)
T 1y1l_A 43 TVKRLLAER-GLK-AKEKPRTVDEVN-------LDDFDLIVTVCEE-SSC----------VVL---PTDKPVTRW-HIEN 98 (124)
T ss_dssp HHHHHHHTT-TCC-CCSSCCBGGGSC-------GGGCSCEEEEECS-SCC----------BCC---SCSSCEEEE-ECCC
T ss_pred HHHHHHHHc-CcC-CCCccccCChhH-------hcCCCEEEEecCc-ccC----------cCC---CCCeeecce-ecCC
Confidence 345566676 998 644445554443 3467899999875 100 000 000122334 7788
Q ss_pred CCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 299 PFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 299 ~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
|+..-.+.|.- .-+.|.+++.++++
T Consensus 99 P~~~~~~~f~~-~~~~i~~~v~~ll~ 123 (124)
T 1y1l_A 99 PAGKDEGTYRR-VLAEIEERVKKLVG 123 (124)
T ss_dssp CTTTCTTHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHh
Confidence 88644444444 56777777777764
No 140
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=38.54 E-value=67 Score=23.36 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=45.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCChHHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~gglg~~ 273 (325)
.++++++. +....|.+|.+.|++. |+....+++....|- .+.+.+.+.+ +=..+++... ..||+...
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~-~i~~~~~di~~~~~~-~~~~~~~l~~~~g~~tvP~ifi~g~-~igG~~~~ 90 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRL-GVQPLVVELDQLGPQ-GPQLQKVLERLTGQHTVPNVFVCGK-HIGGCTDT 90 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHT-TCCCEEEEGGGSTTH-HHHHHHHHHHHHSCCSSCEEEETTE-EEESHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHc-CCCCeEEEeecCCCC-hHHHHHHHHHHhCCCCcCEEEECCE-EEcCcHHH
Confidence 45777665 7778999999999998 999999999875432 2333333322 2256777655 56887654
No 141
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=38.48 E-value=1e+02 Score=25.05 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhhcC--CcEEEEecc--cc--cCCCH-----------------------------HHHHHHHhccCc
Q psy8699 213 QVHVLREVAGLAKEQLG--VSCEVIDLV--SI--LPWDR-----------------------------ETVFQSARKTGR 257 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~g--i~~~vi~~~--~l--~P~d~-----------------------------~~l~~~~~~~~~ 257 (325)
+...+..+++.+++. | .+++++++. .. .+++. +.+.+.+...+.
T Consensus 19 t~~la~~~~~~~~~~-g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 97 (208)
T 2hpv_A 19 SVRALETFLASYRET-NPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADK 97 (208)
T ss_dssp HHHHHHHHHHHHHHH-CTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHh-CCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCE
Confidence 334455667778887 7 899999998 53 34432 224455677887
Q ss_pred EEEEecCCcCCChHHHHHHHHHh
Q psy8699 258 VIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 258 vivvEe~~~~gglg~~v~~~l~e 280 (325)
||+.=-- +.+++...+-.++..
T Consensus 98 iv~~~P~-y~~~~pa~lK~~iD~ 119 (208)
T 2hpv_A 98 VVIANPM-WNLNVPTRLKAWVDT 119 (208)
T ss_dssp EEEEEEC-BTTBCCHHHHHHHHH
T ss_pred EEEEecc-ccCCCCHHHHHHHHH
Confidence 7777655 578888888887754
No 142
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=38.32 E-value=47 Score=26.60 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=38.1
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh--ccCcEEEEecC
Q psy8699 204 DVTLIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR--KTGRVIIAHEA 264 (325)
Q Consensus 204 dv~ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~--~~~~vivvEe~ 264 (325)
+++|+++|+.. ..-..+++.|++.+- ++++++..+ .|++. ...+. +++++|+||--
T Consensus 4 ~ilVlGiGN~L~gDDG~G~~v~~~L~~~~p-~v~vid~Gt-~~~~l---~~~l~~~~~d~lIiVDA~ 65 (157)
T 3pu6_A 4 KKVLLCVGNELRGDDGVAIALGRLVEEQMP-EWSVFFGYD-TPESE---FGKLRELAPDVIVVADAM 65 (157)
T ss_dssp CEEEEEECCTTBGGGGHHHHHHHHHHHHCT-TEEEEEEET-CGGGG---HHHHHHHCCSEEEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCC-CeEEEECCC-CHHHH---HHHHHhcCCCEEEEEEec
Confidence 68899999875 245677777875422 799999887 34432 23334 48899998864
No 143
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=37.85 E-value=63 Score=28.72 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=50.6
Q ss_pred CCCccchHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHH----HHhCCC---ceeec---hhhHHHHHHHHHHHhcc
Q psy8699 3 DQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQ----EKYGKH---RVFNT---PLSEQGIVGFGIGLAVS 72 (325)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~----~~~~p~---r~~~~---gIaE~~~v~~a~GlA~~ 72 (325)
||-.+-.|.+++.++.++..++++++=--+.+|+|+.....+ ++| |+ +++|+ +..+..++--|+=++..
T Consensus 66 Sqps~~~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~-~~~~I~ViDS~~~s~g~g~~v~~A~~l~~~ 144 (297)
T 3nyi_A 66 SLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDY-PDANICVIDSKQNTVTQALLIDQFVRMLED 144 (297)
T ss_dssp ECCCHHHHHHHHHHHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHC-TTCCEEEEECSCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhC-CCCeEEEEeCCchHHHHHHHHHHHHHHHHc
Confidence 345556788999999988889999887777667776444444 678 66 46664 55666667777777777
Q ss_pred CC
Q psy8699 73 GA 74 (325)
Q Consensus 73 G~ 74 (325)
|.
T Consensus 145 G~ 146 (297)
T 3nyi_A 145 GL 146 (297)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 144
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=37.41 E-value=52 Score=25.90 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=25.1
Q ss_pred EEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy8699 206 TLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS 239 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~ 239 (325)
++|.|+|.+....+.++.+.+..|. ++++++..
T Consensus 4 ~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~ 36 (164)
T 2bmv_A 4 IGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAK 36 (164)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGG
T ss_pred EEEEEECCCchHHHHHHHHHHHcCC-cEEEeccc
Confidence 4677999999999999888776566 77776654
No 145
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=36.08 E-value=1.1e+02 Score=22.32 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=44.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHh-----ccCcEEEEecCCcCCChHHH
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR-----KTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~-----~~~~vivvEe~~~~gglg~~ 273 (325)
..+++|++. +....|.+|.+.|++. |+....+++.... +.+.+.+.++ .+=..+++... ..||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~-~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~-~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSL-GVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKV-HVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHT-TCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTE-EEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHc-CCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCE-EEeCHHHH
Confidence 356777666 7788999999999998 9999999887642 2233333331 12256777554 56887643
No 146
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=35.72 E-value=90 Score=26.38 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEeccccc--CC-------------------------------CH--HHHHHHHhccCc
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSIL--PW-------------------------------DR--ETVFQSARKTGR 257 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~--P~-------------------------------d~--~~l~~~~~~~~~ 257 (325)
+...+..+++.|++. |.+++++++.... |. +. +.+.+.++..+.
T Consensus 17 t~~l~~~~~~~l~~~-g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~ 95 (228)
T 3tem_A 17 NGSLKNVAVDELSRQ-GCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADL 95 (228)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCE
Confidence 445566677888888 9999999997642 31 11 223445677888
Q ss_pred EEEEecCCcCCChHHHHHHHHHh
Q psy8699 258 VIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 258 vivvEe~~~~gglg~~v~~~l~e 280 (325)
||+.=-- ..+++...+-.++..
T Consensus 96 iv~~~P~-y~~~~p~~lK~~iD~ 117 (228)
T 3tem_A 96 VIFQFPL-YWFSVPAILKGWMDR 117 (228)
T ss_dssp EEEEEEC-BTTBCCHHHHHHHHH
T ss_pred EEEECCh-hhcccCHHHHHHHHH
Confidence 7777665 568888888877754
No 147
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=35.68 E-value=1.7e+02 Score=28.79 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHHHHHhccC------CeEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChh
Q psy8699 62 IVGFGIGLAVSG------ATAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQS 132 (325)
Q Consensus 62 ~v~~a~GlA~~G------~~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~ 132 (325)
.++.|.|+|++. -+.++++ .++.. + .+++.+. .++..++++. +. ++.-...+..+.-.......
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v-~GDG~~~eG~~~Eal~-~A~~~~l~~l--iv---i~nnN~~~i~~~~~~~~~~~ 198 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCL-LGDGELSEGSVWEAMA-FASIYKLDNL--VA---ILDINRLGQSDPAPLQHQMD 198 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEE-EETGGGGSHHHHHHHH-HHHHTTCTTE--EE---EEEECSBCSSSBCTTTTCHH
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEE-ECccccccCcHHHHHH-HHHHcCCCcE--EE---EEECCCCCCcCCcccccChH
Confidence 455666666551 2455553 67753 3 6677774 5666555542 11 11112122222111112334
Q ss_pred HH-HHHcCCCCcEEEeeC---CHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 133 PE-AYFAHTPGIKVVIPR---GPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 133 d~-~~~~~ip~~~v~~P~---~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
|. ..++.+ |+.++ +. |..++..+++.+ .++|++|-..
T Consensus 199 ~~~~~~~a~-G~~~~-~VdG~d~~~l~~al~~~--~~~P~lI~v~ 239 (616)
T 3mos_A 199 IYQKRCEAF-GWHAI-IVDGHSVEELCKAFGQA--KHQPTAIIAK 239 (616)
T ss_dssp HHHHHHHHT-TCEEE-EEETTCHHHHHHHHHSC--CSSCEEEEEE
T ss_pred HHHHHHHHc-CCeEE-EEcCCCHHHHHHHHHhc--CCCCEEEEEE
Confidence 44 456666 77776 44 677777777655 5799998643
No 148
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=35.52 E-value=85 Score=29.18 Aligned_cols=25 Identities=4% Similarity=0.104 Sum_probs=20.0
Q ss_pred eCCHHHHHHHHHHhHh----CCCcEEEec
Q psy8699 148 PRGPYKAKGLLLSCIK----DKDPCIFFE 172 (325)
Q Consensus 148 P~~~~e~~~~~~~a~~----~~~Pv~i~~ 172 (325)
-.|+.++..+++.|.+ .++|++|-.
T Consensus 255 G~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 255 GNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3478899999998886 589998854
No 149
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=35.45 E-value=75 Score=28.77 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=42.6
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 204 DVTLIGWGTQVH----VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 204 dv~ii~~G~~~~----~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
.-++|.++|... .|...++.|+++ |++++++++.. .+.+.+.+.+.+++.+++.-.. +.++....+..++
T Consensus 252 ~~i~i~y~S~~GnT~~lA~~ia~~l~~~-g~~v~~~~~~~---~~~~~~~~~~~~~d~ii~g~p~-y~~~~~~~~~~~l 325 (398)
T 1ycg_A 252 AKAVIAYDTMWLSTEKMAHALMDGLVAG-GCEVKLFKLSV---SDRNDVIKEILDARAVLVGSPT-INNDILPVVSPLL 325 (398)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEEGGG---SCHHHHHHHHHHCSEEEEECCC-BTTBCCGGGHHHH
T ss_pred CeEEEEEECCccHHHHHHHHHHHHHHhc-CCeEEEEECCC---CCHHHHHHHHHHCCEEEEECCc-cCccchHHHHHHH
Confidence 345566666544 455556667766 88898888753 4556666667778877776443 4455443344443
No 150
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=34.36 E-value=1.3e+02 Score=27.13 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=43.4
Q ss_pred EEEEEechhHHH----HHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 205 VTLIGWGTQVHV----LREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 205 v~ii~~G~~~~~----a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
-++|.++|+... |...++.|+++ |+.++++++.. .+.+.+.+.+.+++.+++.-. ...++....+..++..
T Consensus 254 kv~i~y~S~~Gnt~~lA~~i~~~l~~~-g~~v~~~~~~~---~~~~~~~~~~~~~d~ii~gsp-~~~~~~~~~~~~~l~~ 328 (402)
T 1e5d_A 254 KVVIFYDSMWHSTEKMARVLAESFRDE-GCTVKLMWCKA---CHHSQIMSEISDAGAVIVGSP-THNNGILPYVAGTLQY 328 (402)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEETTT---SCHHHHHHHHHTCSEEEEECC-CBTTBCCHHHHHHHHH
T ss_pred cEEEEEECCChhHHHHHHHHHHHHHhC-CCeEEEEECCC---CCHHHHHHHHHHCCEEEEECC-ccCCCchHHHHHHHHH
Confidence 445556665443 44455566666 88888888763 455666666777776666543 3556665555555543
No 151
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=34.29 E-value=46 Score=32.29 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=24.1
Q ss_pred EEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q psy8699 144 KVVIPRGPYKAKGLLLSCIKD-KDPCIF 170 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~a~~~-~~Pv~i 170 (325)
..+...+..|+..+++++++. ++|++|
T Consensus 500 ~~~~v~~~~el~~al~~a~~~~~gp~li 527 (566)
T 2vbi_A 500 LGLKATTPKELTEAIARAKANTRGPTLI 527 (566)
T ss_dssp EEEEECSHHHHHHHHHHHHHCCSSCEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 666778999999999999987 999998
No 152
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=34.27 E-value=77 Score=28.76 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=44.9
Q ss_pred EEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHH
Q psy8699 206 TLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQ 279 (325)
Q Consensus 206 ~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~ 279 (325)
+++.++| +-..|..+++.|++. |++++++++.. .+.+.+.+.+.+++.|++.=- .+.|+....+..++.
T Consensus 259 ~~i~~~S~~gnT~~la~~i~~~l~~~-g~~v~~~~~~~---~~~~~~~~~l~~~d~iiigsP-~y~~~~~~~~k~~ld 331 (404)
T 2ohh_A 259 VTVIYDTMHGSTRKMAHAIAEGAMSE-GVDVRVYCLHE---DDRSEIVKDILESGAIALGAP-TIYDEPYPSVGDLLM 331 (404)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHTT-TCEEEEEETTT---SCHHHHHHHHHTCSEEEEECC-EETTEECTHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhC-CCeEEEEECCC---CCHHHHHHHHHHCCEEEEECc-cccccchHHHHHHHH
Confidence 4454555 445566667777777 88998888764 455666677778887777644 345666655655553
No 153
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=33.93 E-value=73 Score=30.66 Aligned_cols=99 Identities=6% Similarity=-0.075 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CC--CCC-----CCC
Q psy8699 61 GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VG--HGA-----LYH 129 (325)
Q Consensus 61 ~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g--~g~-----th~ 129 (325)
..++.|.|++++. -++++++ .++.. +..+..+. .+...+++.. +++..-.+. .. .|. ..+
T Consensus 412 ~~l~~A~G~a~a~~~~~vv~~-~GDG~~~~~~~el~-ta~~~~l~~~-------ivv~nN~~~~~~~~~~~~~~~~~~~~ 482 (552)
T 1ovm_A 412 YTLAAAFGAQTACPNRRVIVL-TGDGAAQLTIQELG-SMLRDKQHPI-------ILVLNNEGYTVERAIHGAEQRYNDIA 482 (552)
T ss_dssp HHHHHHHHHHHHCTTSCEEEE-EEHHHHHHHTTHHH-HHHHTTCCCE-------EEEEESSSCHHHHHHSCTTCGGGCCC
T ss_pred hHHHHHHHHHHhCCCCcEEEE-ECchHHHhHHHHHH-HHHHhCCCCE-------EEEEECCCCeEEEeeccCCCCcccCC
Confidence 4567788877663 3566663 67743 33445554 4555454432 112211111 10 011 011
Q ss_pred ChhHH-HHHcCCCCc----EEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 130 SQSPE-AYFAHTPGI----KVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 130 ~~~d~-~~~~~ip~~----~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
. .|. .+...+ |+ ..+...+.+|+...++++++.++|++|
T Consensus 483 ~-~d~~~~a~a~-G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~li 526 (552)
T 1ovm_A 483 L-WNWTHIPQAL-SLDPQSECWRVSEAEQLADVLEKVAHHERLSLI 526 (552)
T ss_dssp C-CCGGGSTTTS-CSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEE
T ss_pred C-CCHHHHHHHh-CCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 233 233333 66 777788999999999999888999988
No 154
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=33.73 E-value=1.3e+02 Score=27.32 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=45.4
Q ss_pred EEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 206 TLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 206 ~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
++|.+|| +-..|...++.|+++ |++++++++... +.+.+.+.+..++.|++.=-- +.|+....+..++..
T Consensus 259 v~iiy~S~~GnT~~la~~i~~~l~~~-g~~v~~~~l~~~---~~~~~~~~l~~~D~iiigsP~-y~~~~~~~~k~fld~ 332 (414)
T 2q9u_A 259 VTVVLDSMYGTTHRMALALLDGARST-GCETVLLEMTSS---DITKVALHTYDSGAVAFASPT-LNNTMMPSVAAALNY 332 (414)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEEGGGC---CHHHHHHHHHTCSEEEEECCC-BTTBCCHHHHHHHHH
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhC-CCeEEEEEcCcC---CHHHHHHHHHhCCEEEEEcCc-cCcCchHHHHHHHHH
Confidence 3444444 445566666677777 889999987653 445555667778877776443 567777666666543
No 155
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=33.71 E-value=26 Score=29.01 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEE-----
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRV----- 293 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~----- 293 (325)
.|++.|++. ||++. ..-++++.+.+ ..++-||++++.+. ..+.....+. ..++..+
T Consensus 84 ~a~~vl~e~-Gidis----hrar~lt~~d~----~~~DlIltMd~~~~-----~~l~~~~P~~-----~~Kv~lL~~~~~ 144 (184)
T 4etn_A 84 HAVEALFEK-HIALN----HVSSPLTEELM----ESADLVLAMTHQHK-----QIIASQFGRY-----RDKVFTLKEYVT 144 (184)
T ss_dssp HHHHHHHHT-TCCCC----CBCCBCCHHHH----HHCSEEEESSHHHH-----HHHHHHCGGG-----GGGEEEHHHHHH
T ss_pred HHHHHHHHc-CCCch----hccCcCCHHHc----CCCCEEEEcCcHHH-----HHHHHHCCCc-----cceEEEhhhhcc
Confidence 355566676 99875 34456665543 45788999987542 2222222111 1223222
Q ss_pred ---cccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 294 ---TGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 294 ---~g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
..+++||..-.+.|.- ..+.|.+++..+++
T Consensus 145 ~~~~dVpDPy~g~~~~F~~-v~d~I~~~i~~ll~ 177 (184)
T 4etn_A 145 GSHGDVLDPFGGSIDIYKQ-TRDELEELLRQLAK 177 (184)
T ss_dssp SSCCCCCCCTTCCHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCccCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 1456666543344444 56677777776654
No 156
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=33.42 E-value=12 Score=29.74 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEc---c
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVT---G 295 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~---g 295 (325)
.|++.|++. |++..- ..-++++.+. +...+-||++++++. ..+.+........++..+. .
T Consensus 52 ~a~~~l~e~-Gid~s~---~~sr~l~~~~----~~~~DlIi~m~~~~~---------~~l~~~~p~~~~~kv~~l~~~~~ 114 (146)
T 1p8a_A 52 RSQKVCKSN-GVDISK---QRARQITKAD----FSKFDVIAALDQSIL---------SDINSMKPSNCRAKVVLFNPPNG 114 (146)
T ss_dssp HHHHHHHHH-SCCCCC---CCCCCCCSHH----HHSCSEEEESSHHHH---------HHHHHHCCSSCSCEEEECSCTTS
T ss_pred HHHHHHHHc-CCChhc---CeeccCCHhH----hhcCCEEEEeChHHH---------HHHHHHCCcccCCeEEEeCCCCC
Confidence 455566676 998742 3345666543 356889999988542 1222222111123455552 5
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHh
Q psy8699 296 YDTPFPHIFEPFYIPDKWRCLEAVKQIT 323 (325)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~I~~~i~~~~ 323 (325)
+++||..- +.|.- .-+.|.+++..++
T Consensus 115 i~DP~~~~-~~f~~-~~~~I~~~v~~ll 140 (146)
T 1p8a_A 115 VDDPYYSS-DGFPT-MFASISKEMKPFL 140 (146)
T ss_dssp SCCCSSSS-SSHHH-HHHHHHHTTHHHH
T ss_pred CCCCCCCC-HHHHH-HHHHHHHHHHHHH
Confidence 77777522 22222 3445555555544
No 157
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=33.31 E-value=41 Score=27.71 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhhcCCcEE-EEecccccCCCH------------HHHHHHHhccCcEEEEecCCcCCChHHHHHHHH
Q psy8699 213 QVHVLREVAGLAKEQLGVSCE-VIDLVSILPWDR------------ETVFQSARKTGRVIIAHEAPLTSGFGAELAASI 278 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~-vi~~~~l~P~d~------------~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l 278 (325)
......+++..+.++ |.+++ ++++.-+-.++. +.+.+.++..+.+|+.=-- +++++...+-.++
T Consensus 19 ~t~~l~~~~~~~~~~-g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~-y~~~~~~~lK~~i 95 (193)
T 3svl_A 19 FNGMVARTLPKIAPA-SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPE-YNYSVPGGLKNAI 95 (193)
T ss_dssp HHHHHHHHGGGTSCT-TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECC-BTTBCCHHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEecc-cCCCCCHHHHHHH
Confidence 334444444333344 67777 777776422221 2355666677776666554 4566666555555
No 158
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=33.09 E-value=85 Score=28.30 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=49.4
Q ss_pred CCCccchHHHHHHHHHhcCCCEEEEcCcCCCCcccccch----hHHHHhCCC---ceeec---hhhHHHHHHHHHHHhcc
Q psy8699 3 DQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSL----GLQEKYGKH---RVFNT---PLSEQGIVGFGIGLAVS 72 (325)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~----~~~~~~~p~---r~~~~---gIaE~~~v~~a~GlA~~ 72 (325)
||-.+-.|.+++.+++++..++++++=--+.+|+|+... .+.++| |+ .++|+ +..+..++--|+=++..
T Consensus 97 SqPs~~~~~~~f~~l~~~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~-~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~ 175 (320)
T 3pl5_A 97 SQVNVGQFESYFRQSAENGQEVLYIAFSSVLSGTYQSAVMARDIVLEEY-PQASIEIVDTLAATGGEGYLAMLAAQAREE 175 (320)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEECCTTTCTHHHHHHHHHHHHHHHC-TTCCEEEEECCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEecCchHhHHHHHHHHHHHHHHhhC-CCCeEEEEcCCchHHHHHHHHHHHHHHHhc
Confidence 344556788999999888889999887766666766432 344568 66 56775 55666667777777777
Q ss_pred CC
Q psy8699 73 GA 74 (325)
Q Consensus 73 G~ 74 (325)
|.
T Consensus 176 G~ 177 (320)
T 3pl5_A 176 GK 177 (320)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 159
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=32.94 E-value=1.1e+02 Score=24.77 Aligned_cols=25 Identities=8% Similarity=0.023 Sum_probs=21.7
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHH
Q psy8699 200 VAGTDVTLIGWGTQVHVLREVAGLA 224 (325)
Q Consensus 200 ~~g~dv~ii~~G~~~~~a~~A~~~L 224 (325)
.+..++.+++.|++...|..++..|
T Consensus 43 ~~a~~I~i~G~G~S~~~A~~~~~~l 67 (199)
T 1x92_A 43 LNEGKILSCGNGGSAGDAQHFSSEL 67 (199)
T ss_dssp HTTCCEEEECSTHHHHHHHHHHHHH
T ss_pred HCCCEEEEEcCchhHHHHHHHHHHH
Confidence 3456899999999999999999888
No 160
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=32.81 E-value=1.1e+02 Score=24.00 Aligned_cols=78 Identities=14% Similarity=0.000 Sum_probs=44.7
Q ss_pred eccc-ccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccc-cccCC----
Q psy8699 236 DLVS-ILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIF-EPFYI---- 309 (325)
Q Consensus 236 ~~~~-l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~-~~~~l---- 309 (325)
++.. +-+++.+.+.+.+...+ ++++-. ...|++..+.+++.- +.|+... .. ....+.. ...++
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad-~~l~ps--~~e~~~~~~~Ea~a~------G~PvI~~-~~-~~~~e~~~~~~g~~~~~ 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVD-FVIIPS--YFEPFGLVALEAMCL------GAIPIAS-AV-GGLRDIITNETGILVKA 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCS-EEEECC--SCCSSCHHHHHHHHT------TCEEEEE-SC-HHHHHHCCTTTCEEECT
T ss_pred CEEEEeccCCHHHHHHHHHHCC-EEEECC--CCCCccHHHHHHHHC------CCCEEEe-CC-CChHHHcCCCceEEecC
Confidence 4445 56678888888888776 444432 235677777777753 3565432 11 1112222 11121
Q ss_pred CCHHHHHHHHHHHhh
Q psy8699 310 PDKWRCLEAVKQITR 324 (325)
Q Consensus 310 ~~~~~I~~~i~~~~~ 324 (325)
-+++.+++++.++++
T Consensus 165 ~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 165 GDPGELANAILKALE 179 (200)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 178899999988764
No 161
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=32.76 E-value=1.2e+02 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=25.0
Q ss_pred CcEEE---eeCCHHHHHHHHHHhHhCCCcEEEecc
Q psy8699 142 GIKVV---IPRGPYKAKGLLLSCIKDKDPCIFFEP 173 (325)
Q Consensus 142 ~~~v~---~P~~~~e~~~~~~~a~~~~~Pv~i~~~ 173 (325)
|+..+ ...|..++..++++|.+.++|++|-..
T Consensus 252 G~~~~g~vdG~d~~~l~~al~~A~~~~~P~lI~v~ 286 (629)
T 2o1x_A 252 GVRYVGPVDGHNVQELVWLLERLVDLDGPTILHIV 286 (629)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTTSSSEEEEEEE
T ss_pred CCeEEeeECCcCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 45444 456899999999999888999998543
No 162
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=32.51 E-value=1.6e+02 Score=26.61 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=40.1
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccccc-------------CCCHHHHHHHHhccCcEEEEec
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSIL-------------PWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~-------------P~d~~~l~~~~~~~~~vivvEe 263 (325)
++.++.|++.|.......++++ +. |+++-+++..--. ..|.+.+.+.+++.+ +|+.|-
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~---~l-G~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~d-vi~~~~ 81 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQ---KM-GYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCD-VITYEF 81 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH---HT-TCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCS-EEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHH---HC-CCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCC-cceecc
Confidence 4668999999987665555554 44 9999888864222 246678888887765 677764
No 163
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=32.38 E-value=58 Score=31.55 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=23.8
Q ss_pred EEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q psy8699 144 KVVIPRGPYKAKGLLLSCIKD-KDPCIF 170 (325)
Q Consensus 144 ~v~~P~~~~e~~~~~~~a~~~-~~Pv~i 170 (325)
..+...+.+|+...++++++. ++|++|
T Consensus 508 ~~~~v~~~~el~~al~~a~~~~~gp~li 535 (568)
T 2wvg_A 508 KGLKAKTGGELAEAIKVALANTDGPTLI 535 (568)
T ss_dssp EEEEESBHHHHHHHHHHHHHCCSSCEEE
T ss_pred ceEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 566678999999999999987 899998
No 164
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=32.25 E-value=40 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=24.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEec
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~ 237 (325)
.||+||+.|..- +-|+..|++. |+++.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~-G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAA-GHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHT-TCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHC-CCCEEEEEC
Confidence 479999999754 3356678787 999999984
No 165
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=31.88 E-value=1.1e+02 Score=20.19 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhcc-CcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKT-GRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 204 dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~-~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
++++++. +....|.++...|++. |++...+++..- |-..+.+.+..... =.+++++. ...||+. .+.+++.+
T Consensus 2 ~i~~y~~-~~C~~C~~~~~~l~~~-~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~l~~~g-~~i~g~~-~i~~~~~~ 74 (82)
T 1fov_A 2 NVEIYTK-ETCPYCHRAKALLSSK-GVSFQELPIDGN-AAKREEMIKRSGRTTVPQIFIDA-QHIGGYD-DLYALDAR 74 (82)
T ss_dssp CEEEEEC-SSCHHHHHHHHHHHHH-TCCCEEEECTTC-SHHHHHHHHHHSSCCSCEEEETT-EEEESHH-HHHHHHHT
T ss_pred cEEEEEC-CCChhHHHHHHHHHHC-CCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECC-EEEeCHH-HHHHHHHC
Confidence 3555543 5567888888899888 999999988741 11112333332221 24566644 4567764 45555543
No 166
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=31.85 E-value=2.6e+02 Score=24.40 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=42.7
Q ss_pred ccCCCHHHHHHHHhccCcEEEEecCC-----cCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCcccccc-cC--CC-
Q psy8699 240 ILPWDRETVFQSARKTGRVIIAHEAP-----LTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEP-FY--IP- 310 (325)
Q Consensus 240 l~P~d~~~l~~~~~~~~~vivvEe~~-----~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~-~~--l~- 310 (325)
+-+++.+.+.+.+...+ ++++-... ...|++..+.+++.- +.|+... .. +...+..+. .| ..
T Consensus 258 ~g~~~~~~~~~~~~~ad-~~v~ps~~~~~~~~~e~~~~~~~Ea~a~------G~PvI~~-~~-~~~~e~i~~~~g~~~~~ 328 (394)
T 3okp_A 258 LGRLEYQDMINTLAAAD-IFAMPARTRGGGLDVEGLGIVYLEAQAC------GVPVIAG-TS-GGAPETVTPATGLVVEG 328 (394)
T ss_dssp EESCCHHHHHHHHHHCS-EEEECCCCBGGGTBCCSSCHHHHHHHHT------TCCEEEC-SS-TTGGGGCCTTTEEECCT
T ss_pred cCCCCHHHHHHHHHhCC-EEEecCccccccccccccCcHHHHHHHc------CCCEEEe-CC-CChHHHHhcCCceEeCC
Confidence 44567777878887776 44443321 015677777777753 3566422 11 223343322 22 22
Q ss_pred -CHHHHHHHHHHHhh
Q psy8699 311 -DKWRCLEAVKQITR 324 (325)
Q Consensus 311 -~~~~I~~~i~~~~~ 324 (325)
+++.+++++.++++
T Consensus 329 ~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 329 SDVDKLSELLIELLD 343 (394)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 88999999988763
No 167
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=31.60 E-value=79 Score=25.35 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=40.1
Q ss_pred echhHHHHHHHHHHHHh-hcCCcEEEEecccccCCCHHHH--------------HHHHhccCcEEEEecCCcCCChHHHH
Q psy8699 210 WGTQVHVLREVAGLAKE-QLGVSCEVIDLVSILPWDRETV--------------FQSARKTGRVIIAHEAPLTSGFGAEL 274 (325)
Q Consensus 210 ~G~~~~~a~~A~~~L~~-~~gi~~~vi~~~~l~P~d~~~l--------------~~~~~~~~~vivvEe~~~~gglg~~v 274 (325)
+|++-..+...++.+++ . |.+++++++....| .... .+.+..++.||+.=-- +.|++...+
T Consensus 12 ~g~t~~la~~i~~~l~~~~-g~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~-y~~~~~~~l 87 (198)
T 3b6i_A 12 YGHIETMARAVAEGASKVD-GAEVVVKRVPETMP--PQLFEKAGGKTQTAPVATPQELADYDAIIFGTPT-RFGNMSGQM 87 (198)
T ss_dssp SSHHHHHHHHHHHHHHTST-TCEEEEEECCCCSC--HHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEE-ETTEECHHH
T ss_pred CcHHHHHHHHHHHHHhhcC-CCEEEEEEccccCc--hhhhhhcccccccCchhhHHHHHHCCEEEEEeCh-hcCCchHHH
Confidence 35566667777778887 7 99999999986522 1110 2334556655555333 456666666
Q ss_pred HHHHH
Q psy8699 275 AASIQ 279 (325)
Q Consensus 275 ~~~l~ 279 (325)
..++.
T Consensus 88 k~~ld 92 (198)
T 3b6i_A 88 RTFLD 92 (198)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66554
No 168
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=30.80 E-value=47 Score=28.27 Aligned_cols=71 Identities=10% Similarity=-0.032 Sum_probs=42.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhh--cCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCCh---HHHHHHH
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQ--LGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGF---GAELAAS 277 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~--~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~ggl---g~~v~~~ 277 (325)
.+-++|.|||++..+.+.++.|.+. .|+++.|+++....+ +. +.+.+.+|++=.-+-.|-+ ...+...
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~---~~----l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~ 112 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRL---SC----LEEERLLLVVTSTFGNGDCPGNGEKLKKS 112 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCG---GG----GGTCSEEEEEEECBTTTBCCGGGHHHHHH
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCH---hH----hccCCeEEEEEeccCCCcCCHHHHHHHHH
Confidence 3456778999988888888776542 277888888776532 21 3455666666444323433 3344455
Q ss_pred HHh
Q psy8699 278 IQD 280 (325)
Q Consensus 278 l~e 280 (325)
|.+
T Consensus 113 L~~ 115 (219)
T 3hr4_A 113 LFM 115 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 169
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=30.49 E-value=1.3e+02 Score=27.80 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=39.9
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc-------------ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 200 VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS-------------ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 200 ~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~-------------l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
.++.++.|++.|.......+|++. . |+++-+++... ....|.+.+.+.+++.+ +|+.|-.
T Consensus 33 ~~~~~IlIlG~G~lg~~~~~aa~~---l-G~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D-~V~~~~e 105 (419)
T 4e4t_A 33 LPGAWLGMVGGGQLGRMFCFAAQS---M-GYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCE-AVSTEFE 105 (419)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---T-TCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCS-EEEECCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---C-CCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCC-EEEEccC
Confidence 356789999998765555555544 4 99998887531 12346778888887666 5566643
No 170
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=30.06 E-value=2e+02 Score=28.86 Aligned_cols=91 Identities=11% Similarity=-0.054 Sum_probs=50.5
Q ss_pred eEEEEecccccH-H--HHHHHHHHHHhhcccccCCceeccceEEeccCccCCC-CCCCCChhHHHHHcCCCCcEEEee--
Q psy8699 75 TAIAEIQFADYI-F--PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGH-GALYHSQSPEAYFAHTPGIKVVIP-- 148 (325)
Q Consensus 75 ~p~~~it~~~F~-~--ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~-g~th~~~~d~~~~~~ip~~~v~~P-- 148 (325)
+.++++ .++.- + ..+|.+ +.++..++++. ++ ++.....+..+. ... ...+....+++. ||.++..
T Consensus 169 ~~v~~~-~GDG~l~eG~~~EAl-~~A~~~~L~nl-i~----i~d~N~~si~~~~~~~-~~~~~~~~~~a~-G~~~~~V~D 239 (700)
T 3rim_A 169 HYIYVI-ASDGDIEEGVTSEAS-SLAAVQQLGNL-IV----FYDRNQISIEDDTNIA-LCEDTAARYRAY-GWHVQEVEG 239 (700)
T ss_dssp CCEEEE-EEHHHHHSHHHHHHH-HHHHHTTCTTE-EE----EEEECSEETTEEGGGT-CCCCHHHHHHHH-TCEEEEEEC
T ss_pred CeEEEE-ECCcccccChHHHHH-HHHHHcCCCcE-EE----EEECCCcccccchhhc-cchhHHHHHHHc-CCeEEEECC
Confidence 345553 67753 3 556666 46776666542 11 111111111111 111 122223456655 7777765
Q ss_pred -CCHHHHHHHHHHhHh-CCCcEEEeccc
Q psy8699 149 -RGPYKAKGLLLSCIK-DKDPCIFFEPK 174 (325)
Q Consensus 149 -~~~~e~~~~~~~a~~-~~~Pv~i~~~~ 174 (325)
.|..++..+++.|.+ .++|++|....
T Consensus 240 G~D~~al~~Al~~A~~~~~~P~lI~~~T 267 (700)
T 3rim_A 240 GENVVGIEEAIANAQAVTDRPSFIALRT 267 (700)
T ss_dssp TTCHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCCEEEEEEE
Confidence 588999999999987 68999997653
No 171
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=29.77 E-value=20 Score=28.26 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=26.7
Q ss_pred eCCcEEEEEechhHHH-HHHHHHHHHhhcCCcEEEEecc
Q psy8699 201 AGTDVTLIGWGTQVHV-LREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
+..|++||++|..... --+..+.|++. ||.+++.+-.
T Consensus 66 p~pevliiGTG~~~~~l~p~l~~~l~~~-GI~vE~M~T~ 103 (135)
T 2fvt_A 66 NAIDTLIVGTGADVWIAPRQLREALRGV-NVVLDTMQTG 103 (135)
T ss_dssp TSCSEEEEECTTSCCCCCHHHHHHHHTT-TCEEEEECHH
T ss_pred CCCCEEEEcCCCCCCcCCHHHHHHHHHc-CCEEEEeCHH
Confidence 3479999999976542 33556778888 9999887543
No 172
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=29.66 E-value=86 Score=24.67 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=35.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccC-CCHHHHHHH
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILP-WDRETVFQS 251 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P-~d~~~l~~~ 251 (325)
+..++++|+-|+-....+-.++.|.+. +-++.++..++-.- +-.+.|.+.
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~-~~~v~l~g~r~~~d~~~~~el~~l 72 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEI-GNDVTTLHVTFEPMVILKEELEKA 72 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHH-TCEEEEEEECBGGGCCSHHHHHHH
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhc-CCcEEEEEeCCHHHhhHHHHHHHH
Confidence 356899999999998888888888777 77888875555432 233555443
No 173
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=28.85 E-value=1.2e+02 Score=29.29 Aligned_cols=100 Identities=8% Similarity=-0.053 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--CC--CCC-----CCC
Q psy8699 61 GIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--VG--HGA-----LYH 129 (325)
Q Consensus 61 ~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~g--~g~-----th~ 129 (325)
..+..|.|+|++- -++++++ .++.. +..+..|. .+...+++.. . +++-. .+. .+ .+. ..+
T Consensus 429 ~~l~~A~Gaala~~~~~vv~~-~GDG~~~~~~~eL~-ta~~~~l~~~---i---vv~nN-~~~~~~~~~~~~~~~~~~~~ 499 (570)
T 2vbf_A 429 YTFPAALGSQIADKESRHLLF-IGDGSLQLTVQELG-LSIREKLNPI---C---FIINN-DGYTVEREIHGPTQSYNDIP 499 (570)
T ss_dssp THHHHHHHHHHHCTTSEEEEE-EEHHHHHHHGGGHH-HHHHTTCCCE---E---EEEES-SSCHHHHHHSCTTCGGGCCC
T ss_pred hhHHHHHHHHHhCCCCcEEEE-EcchhhhcCHHHHH-HHHHcCCCCE---E---EEEEC-CchHHHHHHhccCCCccCCC
Confidence 4566778877653 3666664 67743 33444453 4555555432 1 12211 111 11 111 011
Q ss_pred ChhHHHHHcCCCCcE-----EEeeCCHHHHHHHHHHh-HhCCCcEEE
Q psy8699 130 SQSPEAYFAHTPGIK-----VVIPRGPYKAKGLLLSC-IKDKDPCIF 170 (325)
Q Consensus 130 ~~~d~~~~~~ip~~~-----v~~P~~~~e~~~~~~~a-~~~~~Pv~i 170 (325)
..+...+.+.+ |+. .+...+.+|+...++++ .+.++|++|
T Consensus 500 ~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~li 545 (570)
T 2vbf_A 500 MWNYSKLPETF-GATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWI 545 (570)
T ss_dssp CCCGGGHHHHT-TCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCHHHHHHHc-CCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 11222333333 444 56668999999999984 667899988
No 174
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=28.73 E-value=41 Score=27.25 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=45.0
Q ss_pred HHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEc-----
Q psy8699 220 VAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVT----- 294 (325)
Q Consensus 220 A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~----- 294 (325)
|++.|++. ||++. -..-++++.+.+ ...+-||++++.+. ..+....... ..++..+.
T Consensus 69 a~~vl~e~-Gid~s---~~~sr~l~~~~~----~~~DlIitM~~~~~-----~~l~~~~p~~-----~~kv~~l~~w~~~ 130 (167)
T 2fek_A 69 AISVAAEH-QLSLE---GHCARQISRRLC----RNYDLILTMEKRHI-----ERLCEMAPEM-----RGKVMLFGHWDNE 130 (167)
T ss_dssp HHHHHHHT-TCCCT---TCCCCBCCHHHH----HHSSEEEESCHHHH-----HHHHHHCGGG-----GGGEEEGGGGTTT
T ss_pred HHHHHHHc-CCCcc---CCcCccCCHHHh----ccCCEEEEcCHHHH-----HHHHHhCCcc-----cceEEehHHhCCC
Confidence 45566676 88763 334567776643 46788999988642 2232222211 11232221
Q ss_pred -ccCCCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 295 -GYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 295 -g~~~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
.+++||..-.+.|.- .-+.|.+++.++++
T Consensus 131 ~~I~DP~~~~~~~f~~-v~~~I~~~v~~ll~ 160 (167)
T 2fek_A 131 CEIPDPYRKSRETFAA-VYTLLERSARQWAQ 160 (167)
T ss_dssp CCCCCCTTSCHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 456666533333333 45666666666653
No 175
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=28.56 E-value=20 Score=27.82 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=26.6
Q ss_pred eCCcEEEEEechhHHH-HHHHHHHHHhhcCCcEEEEec
Q psy8699 201 AGTDVTLIGWGTQVHV-LREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~ 237 (325)
+..+++||++|..... --+..+.|++. ||.+++.+-
T Consensus 67 p~pevliiGtG~~~~~l~p~~~~~l~~~-GI~vE~m~T 103 (128)
T 2fi9_A 67 DQIEVLLIGTGVELLRLPEELRVLLWEK-RISSDTMST 103 (128)
T ss_dssp GGCSEEEEECTTSCCCCCHHHHHHHHHT-TCEEEEECH
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHc-CCEEEEeCH
Confidence 3479999999987532 33556778887 999988754
No 176
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=28.42 E-value=65 Score=28.98 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=49.9
Q ss_pred CCccchHHHHHHHHHhcCCCEEEEcCcCCCCcccccchhHHHHhCCC---ceeec---hhhHHHHHHHHHHHhccCC
Q psy8699 4 QGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKH---RVFNT---PLSEQGIVGFGIGLAVSGA 74 (325)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~p~---r~~~~---gIaE~~~v~~a~GlA~~G~ 74 (325)
|-.+-.|.+++.++.++.+++++++=--+.+|+|+...-.++.| |+ .++|+ +..+..++--|+=++..|.
T Consensus 97 qPs~~~~~~~fe~l~~~~~~Ii~I~iSS~LSGTy~sA~~Aa~~~-~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G~ 172 (315)
T 3fys_A 97 QPPIGELVALYEELGKSYDAVISIHLSSGISGTFSSAAAADSMV-DNIDVYPFDSEISCLAQGFYALKAAELIKNGA 172 (315)
T ss_dssp CCCHHHHHHHHHHHTTTCSEEEEEESCTTTCSHHHHHHHGGGGC-SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeCCCcHhHHHHHHHHHHHhC-CCCCEEEECCchhHHHHHHHHHHHHHHHHcCC
Confidence 44455788999888888888999886666667777555566678 66 45664 5566666777777777776
No 177
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.29 E-value=65 Score=22.93 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=26.1
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 139 HTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 139 ~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+-|+-.+-...+.++.+++++.+-.+.+|.+++
T Consensus 25 nypgryirtatssqdirdiiksmkdngkplvvf 57 (112)
T 2lnd_A 25 NYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVF 57 (112)
T ss_dssp HSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEE
T ss_pred CCCCceeeeccchhhHHHHHHHHHhcCCeEEEE
Confidence 468888888889999999888776677777763
No 178
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=27.81 E-value=2e+02 Score=21.74 Aligned_cols=102 Identities=9% Similarity=-0.011 Sum_probs=56.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhc
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKC 282 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~ 282 (325)
..+.|++.|.......+.++ +. ++. +.. -.++.+.+.+.+...+ +++.-.. .-|++..+.+++.-
T Consensus 33 ~~l~i~G~g~~~~~~~~~~~---~~-~~~-----v~~-g~~~~~~~~~~~~~ad-v~v~ps~--~e~~~~~~~Eama~-- 97 (166)
T 3qhp_A 33 IVLLLKGKGPDEKKIKLLAQ---KL-GVK-----AEF-GFVNSNELLEILKTCT-LYVHAAN--VESEAIACLEAISV-- 97 (166)
T ss_dssp EEEEEECCSTTHHHHHHHHH---HH-TCE-----EEC-CCCCHHHHHHHHTTCS-EEEECCC--SCCCCHHHHHHHHT--
T ss_pred eEEEEEeCCccHHHHHHHHH---Hc-CCe-----EEE-eecCHHHHHHHHHhCC-EEEECCc--ccCccHHHHHHHhc--
Confidence 45667776666544443333 33 662 222 4556788888888776 4555332 35677777777752
Q ss_pred cccCCC-CeEEEcccCCCCcccccc----cCCCCHHHHHHHHHHHhh
Q psy8699 283 FLSLEA-PIRRVTGYDTPFPHIFEP----FYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 283 ~~~~~~-~v~~~~g~~~~~~~~~~~----~~l~~~~~I~~~i~~~~~ 324 (325)
+. |+... ...+...++.+. +.--+++.+++++.++++
T Consensus 98 ----G~vPvi~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 98 ----GIVPVIAN-SPLSATRQFALDERSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp ----TCCEEEEC-CTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHH
T ss_pred ----CCCcEEee-CCCCchhhhccCCceEEcCCCHHHHHHHHHHHHh
Confidence 34 66531 111112233221 112378999999988764
No 179
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=27.24 E-value=1.5e+02 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHH
Q psy8699 200 VAGTDVTLIGWGTQVHVLREVAGLAK 225 (325)
Q Consensus 200 ~~g~dv~ii~~G~~~~~a~~A~~~L~ 225 (325)
..+.++.+++.|+....|......|.
T Consensus 39 ~~a~~I~i~G~G~S~~~A~~~~~~l~ 64 (196)
T 2yva_A 39 LNGNKILCCGNGTSAANAQHFAASMI 64 (196)
T ss_dssp HTTCCEEEEESTHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCchhhHHHHHHHHHHh
Confidence 34568999999999999999988876
No 180
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=26.22 E-value=1.6e+02 Score=23.13 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCcEEEEecccccC-----------------CCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHh
Q psy8699 218 REVAGLAKEQLGVSCEVIDLVSILP-----------------WDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 218 ~~A~~~L~~~~gi~~~vi~~~~l~P-----------------~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e 280 (325)
...++.+.+ +++++++++..... -|.+.+.+.+..++.||+.=-- +.+++...+..++..
T Consensus 20 ~~la~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~-y~~~~p~~lK~~iD~ 96 (184)
T 1rli_A 20 DVLAEKAVQ--GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPI-YWFGMSGTLKLFIDR 96 (184)
T ss_dssp HHHHHHHHT--TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEEC-BTTBCCHHHHHHHHT
T ss_pred HHHHHHHHc--CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCc-cccCCcHHHHHHHHH
Confidence 334444433 66777787765421 1344566677788887777655 568888877777653
No 181
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=26.15 E-value=1.8e+02 Score=23.74 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=36.5
Q ss_pred cEEEEEechh---HHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCC
Q psy8699 204 DVTLIGWGTQ---VHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAP 265 (325)
Q Consensus 204 dv~ii~~G~~---~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~ 265 (325)
+++|+.+|.. .....++++.+++. |+++.+|.+-+-.. +.+ +.+++++ ...++.+.+..
T Consensus 108 riiil~~~~~~~~~~~~~~~a~~lk~~-gi~v~~Ig~G~~~~-~~~-l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 108 RIVAFVGSPIVEDEKNLIRLAKRMKKN-NVAIDIIHIGELQN-ESA-LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp EEEEEECSCCSSCHHHHHHHHHHHHHT-TEEEEEEEESCC----CH-HHHHHHHHCSTTCCEEEEECCCS
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHC-CCEEEEEEeCCCCc-cHH-HHHHHHhccCCCceEEEEecCcc
Confidence 3444444422 45677889999998 99999999988543 223 5555544 23566666653
No 182
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=26.11 E-value=1.3e+02 Score=26.73 Aligned_cols=33 Identities=9% Similarity=-0.123 Sum_probs=15.5
Q ss_pred CCcEEEEecccccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++-+=+.|. -..++.+.+.++. +...|+-+=+.
T Consensus 137 ~lPiilYn~--g~~l~~~~~~~La-~~pnIvgiKds 169 (316)
T 3e96_A 137 DFPSLVYFK--DPEISDRVLVDLA-PLQNLVGVKYA 169 (316)
T ss_dssp TSCEEEEEC--CTTSCTHHHHHHT-TCTTEEEEEEC
T ss_pred CCCEEEEeC--CCCCCHHHHHHHH-cCCCEEEEEeC
Confidence 445555553 1234445555544 44455555443
No 183
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=26.10 E-value=61 Score=25.88 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~ 265 (325)
.|++.|++. ||++. ..-++++.+.+ ...+-||++++++
T Consensus 57 ~a~~~l~e~-Gid~s----~~ar~l~~~~~----~~~DlIi~M~~~~ 94 (161)
T 2cwd_A 57 RARRVLEEE-GAYFP----HVARRLTREDV----LAYDHILVMDREN 94 (161)
T ss_dssp HHHHHHHHH-TCCCC----CCCCBCCHHHH----HHCSEEEESSHHH
T ss_pred HHHHHHHHc-CcCcc----ccccCCCHhHh----ccCCEEEECChHH
Confidence 455666676 88874 34455665443 4678899998854
No 184
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=25.58 E-value=85 Score=23.83 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=43.0
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhhcCC-cEEEEecccccCCCHHHHHHHHhc-----cCcEEEEecCCcCCChH
Q psy8699 202 GTDVTLIGWGT----QVHVLREVAGLAKEQLGV-SCEVIDLVSILPWDRETVFQSARK-----TGRVIIAHEAPLTSGFG 271 (325)
Q Consensus 202 g~dv~ii~~G~----~~~~a~~A~~~L~~~~gi-~~~vi~~~~l~P~d~~~l~~~~~~-----~~~vivvEe~~~~gglg 271 (325)
..+++|++-|+ ....+.+|.+.|++. |+ +...+++.. | ..+++.+++ +=.-|+|.... .||.-
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~-gv~~~~~~~v~~----~-~~~r~~l~~~sg~~TvPqIFI~g~~-IGG~D 91 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLH-GVRDYAAYNVLD----D-PELRQGIKDYSNWPTIPQVYLNGEF-VGGCD 91 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCSCEEEETTS----C-HHHHHHHHHHHTCCSSCEEEETTEE-EECHH
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHh-CCcCeEeecccC----C-HHHHHHHHHhccCCCCCeEeECCEE-ECCHH
Confidence 35799998885 578899999999988 98 578887753 2 234443332 22447776653 48875
Q ss_pred H
Q psy8699 272 A 272 (325)
Q Consensus 272 ~ 272 (325)
.
T Consensus 92 d 92 (118)
T 2wul_A 92 I 92 (118)
T ss_dssp H
T ss_pred H
Confidence 4
No 185
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=25.53 E-value=28 Score=27.25 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=27.9
Q ss_pred eeeCCcEEEEEechhHHH-HHHHHHHHHhhcCCcEEEEec
Q psy8699 199 LVAGTDVTLIGWGTQVHV-LREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 199 ~~~g~dv~ii~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~ 237 (325)
+..+.+++||++|..... --+..+.|++. ||.+++.+-
T Consensus 61 l~~~pevliiGTG~~~~~l~p~~~~~l~~~-GI~vE~m~T 99 (132)
T 2gm2_A 61 LALNPAVILLGTGERQQFPSTDVLAACLTR-GIGLEAMTN 99 (132)
T ss_dssp HHHCCSEEEEECTTSCCCCCHHHHHHHHHH-TCEEEEECH
T ss_pred HhcCCCEEEECCCCCCCcCCHHHHHHHHHc-CCEEEEeCH
Confidence 344689999999986542 34456778888 999988754
No 186
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=25.18 E-value=91 Score=24.63 Aligned_cols=49 Identities=8% Similarity=-0.020 Sum_probs=28.3
Q ss_pred EEEechhH----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEec
Q psy8699 207 LIGWGTQV----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 207 ii~~G~~~----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
+|.|+|.. ..|...++.|+++ |+++.++++....+- . +.+++.|++.=.
T Consensus 13 ~I~Y~S~tGnT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~~---~----l~~~d~ii~g~p 65 (167)
T 1ykg_A 13 TIISASQTGNARRVAEALRDDLLAA-KLNVKLVNAGDYKFK---Q----IASEKLLIVVTS 65 (167)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHH-TCCCEEEEGGGCCGG---G----GGGCSEEEEEEE
T ss_pred EEEEECCchHHHHHHHHHHHHHHHC-CCceEEeehhhCCHH---H----hccCCeEEEEEc
Confidence 34455544 4455555566666 888998888664331 1 345666666543
No 187
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=24.83 E-value=2.2e+02 Score=21.59 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=34.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc------c-------------cCCCHHHHHHH-HhccCcEEEE
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS------I-------------LPWDRETVFQS-ARKTGRVIIA 261 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~------l-------------~P~d~~~l~~~-~~~~~~vivv 261 (325)
.+++|+++|..... .++.|.+. |.++.+++... + .+.+.+.+.+. +++.+.|++.
T Consensus 4 ~~vlI~G~G~vG~~---la~~L~~~-g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 4 DHFIVCGHSILAIN---TILQLNQR-GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHT-TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CcEEEECCCHHHHH---HHHHHHHC-CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 46888888776654 44566666 88888887631 1 22344556555 6666655554
No 188
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=24.82 E-value=3.1e+02 Score=26.76 Aligned_cols=26 Identities=12% Similarity=-0.107 Sum_probs=22.3
Q ss_pred eeCCHHHHHHHHHHhHhCCCcEEEec
Q psy8699 147 IPRGPYKAKGLLLSCIKDKDPCIFFE 172 (325)
Q Consensus 147 ~P~~~~e~~~~~~~a~~~~~Pv~i~~ 172 (325)
...|..++..++++|.+.++|++|-.
T Consensus 255 dG~d~~~l~~al~~A~~~~gP~lI~v 280 (621)
T 2o1s_A 255 DGHDVLGLITTLKNMRDLKGPQFLHI 280 (621)
T ss_dssp ETTCHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 44689999999999998899998854
No 189
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=24.80 E-value=1.6e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeccccc--CC----------------CHHHHHHHHhccCcEEEEecCCcCCChHHHHH
Q psy8699 214 VHVLREVAGLAKEQLGVSCEVIDLVSIL--PW----------------DRETVFQSARKTGRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 214 ~~~a~~A~~~L~~~~gi~~~vi~~~~l~--P~----------------d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~ 275 (325)
...+..+++.+ +. |.+++++++.... |. |.+.+.+.++..+.||+.=-- +.+++.+.+-
T Consensus 17 ~~l~~~~~~~~-~~-g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~-y~~~~pa~LK 93 (196)
T 3lcm_A 17 AEILKQVQTNL-SK-EHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPI-WWSGMPAILK 93 (196)
T ss_dssp HHHHHHHHHHS-CT-TSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEEC-BTTBCCHHHH
T ss_pred HHHHHHHHHHh-cC-CCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECch-hhccccHHHH
Confidence 34455556667 66 8999999997653 31 235566778888887777555 5688888888
Q ss_pred HHHHh
Q psy8699 276 ASIQD 280 (325)
Q Consensus 276 ~~l~e 280 (325)
.++..
T Consensus 94 ~~iD~ 98 (196)
T 3lcm_A 94 GFIDR 98 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 190
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=24.78 E-value=53 Score=25.93 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~ 265 (325)
.|++.|++. ||++. -..-++++.+. +...+-||++++++
T Consensus 54 ~a~~~l~e~-Gid~~---~~~ar~l~~~~----~~~~DlIi~m~~~~ 92 (150)
T 2wmy_A 54 SAIRVAEKN-GLCLK---GHRGTKFTSAL----ARQYDLLLVMEYSH 92 (150)
T ss_dssp HHHHHHHHT-TCCCT---TCCCCBCCHHH----HTTCSEEEESCHHH
T ss_pred HHHHHHHHc-CCCcc---CCcccCCCHHH----hccCCEEEEcCHHH
Confidence 345566666 88763 33446676553 45678999998864
No 191
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=24.77 E-value=1.6e+02 Score=25.79 Aligned_cols=66 Identities=14% Similarity=-0.018 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEecccccC--------------------------------C--CHHHHHHHHhccCcE
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSILP--------------------------------W--DRETVFQSARKTGRV 258 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P--------------------------------~--d~~~l~~~~~~~~~v 258 (325)
+...+..+++.|++. |-+|+++|+....+ + |.+...+.++..+.|
T Consensus 38 n~aL~~~~~~~l~~~-G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~aD~i 116 (280)
T 4gi5_A 38 NGALKNFAIRHLQQA-GHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADIVAEQEKLLWADTV 116 (280)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHC-CCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHHHHHHHHHHhCCEE
Confidence 344566677888888 99999999965432 1 122334556678877
Q ss_pred EEEecCCcCCChHHHHHHHHHh
Q psy8699 259 IIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 259 ivvEe~~~~gglg~~v~~~l~e 280 (325)
|++=-- ..++.-+.+-.++.+
T Consensus 117 v~~~P~-~w~~~Pa~lK~~iDr 137 (280)
T 4gi5_A 117 IFQFPL-WWFSMPAIMKGWIDR 137 (280)
T ss_dssp EEEEEC-BTTBCCHHHHHHHHH
T ss_pred EEEecc-ccccCcHHHHHHHHH
Confidence 777665 568888888877754
No 192
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=24.73 E-value=1.8e+02 Score=22.10 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHH--------h-ccCcEEEEecCCcCCChHHH
Q psy8699 217 LREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSA--------R-KTGRVIIAHEAPLTSGFGAE 273 (325)
Q Consensus 217 a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~--------~-~~~~vivvEe~~~~gglg~~ 273 (325)
+..|...|+.+ ||..+.+|+.. .|--.+.+.+.. . .+=..|++++. ..||+-..
T Consensus 19 c~~aK~lL~~k-gV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~-~iGG~Dd~ 81 (121)
T 1u6t_A 19 QQDVLGFLEAN-KIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQ-YRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHT-TCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTE-EEEEHHHH
T ss_pred HHHHHHHHHHC-CCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCE-EEechHHH
Confidence 57888999998 99999999986 221122233332 1 12357888886 46888654
No 193
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=24.61 E-value=47 Score=26.60 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=30.4
Q ss_pred EEEEEechhH-----HHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC
Q psy8699 205 VTLIGWGTQV-----HVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 205 v~ii~~G~~~-----~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~ 265 (325)
+.+-|.|... ..--.|++.|++. ||++. ..-++++.+. +.. +-||++++++
T Consensus 38 ~~v~SAGt~~~~~G~~~~p~a~~~l~~~-Gid~s----~~ar~l~~~~----~~~-DlIi~Md~~~ 93 (163)
T 1u2p_A 38 VRVTSAGTGNWHVGSCADERAAGVLRAH-GYPTD----HRAAQVGTEH----LAA-DLLVALDRNH 93 (163)
T ss_dssp EEEEEEESSCTTTTCCCCHHHHHHHHHT-TCCCC----CCCCBCCHHH----HTS-SEEEESSHHH
T ss_pred EEEEecccCCCcCCCCCCHHHHHHHHHc-CcCCC----ceeeECChhh----ccC-CEEEEeCHHH
Confidence 4555555443 1223456667776 98875 3445666543 356 8899997764
No 194
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=24.23 E-value=43 Score=25.12 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=24.7
Q ss_pred eeCCcEEEEE-ech--hHHHHHHHHHHHHhhcCCcEEEE
Q psy8699 200 VAGTDVTLIG-WGT--QVHVLREVAGLAKEQLGVSCEVI 235 (325)
Q Consensus 200 ~~g~dv~ii~-~G~--~~~~a~~A~~~L~~~~gi~~~vi 235 (325)
++|.++++++ .|. ++....+.++.+++. |+++++|
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~-gi~v~vi 114 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAA-GLPVVPV 114 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHT-TCCEEEE
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHC-CCcEEEe
Confidence 4678899999 674 344555666667676 9998876
No 195
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=23.98 E-value=1.5e+02 Score=26.35 Aligned_cols=31 Identities=3% Similarity=-0.029 Sum_probs=13.5
Q ss_pred CCcEEEEecccccCCCHHHHHHHHhccCcEEEEe
Q psy8699 229 GVSCEVIDLVSILPWDRETVFQSARKTGRVIIAH 262 (325)
Q Consensus 229 gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvE 262 (325)
++-+-+.| ++=. ++.+.+.++. +...|+-+=
T Consensus 137 ~lPiilYn-~tg~-l~~~~~~~La-~~pnIvgiK 167 (314)
T 3d0c_A 137 DAPSIIYF-KDAH-LSDDVIKELA-PLDKLVGIK 167 (314)
T ss_dssp SSCEEEEE-CCTT-SCTHHHHHHT-TCTTEEEEE
T ss_pred CCCEEEEe-CCCC-cCHHHHHHHH-cCCCEEEEE
Confidence 34444444 3333 4444444433 334444443
No 196
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=23.80 E-value=1.1e+02 Score=29.44 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcE-EE
Q psy8699 136 YFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPC-IF 170 (325)
Q Consensus 136 ~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv-~i 170 (325)
+...+ |+..+...+.+|+..+++++++.++|+ +|
T Consensus 502 ~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~~li 536 (565)
T 2nxw_A 502 MAAGM-GGDGVRVRTRAELKAALDKAFATRGRFQLI 536 (565)
T ss_dssp HTGGG-TSEEEEECBHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHc-CCCEEEeCCHHHHHHHHHHHHhcCCCeEEE
Confidence 44444 777778899999999999999888887 55
No 197
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=23.51 E-value=32 Score=27.61 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=26.7
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhhcCCcEEEEec
Q psy8699 202 GTDVTLIGWGTQVHV-LREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 202 g~dv~ii~~G~~~~~-a~~A~~~L~~~~gi~~~vi~~ 237 (325)
..+++||++|..... --+..+.|++. ||.+++.+-
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~-GIgvE~M~T 123 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAM-GVGVEAMDT 123 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTT-TCEEEEECH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHc-CCEEEEeCH
Confidence 579999999986543 34556778888 999998753
No 198
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.44 E-value=2.4e+02 Score=22.15 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=30.5
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEe
Q psy8699 200 VAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236 (325)
Q Consensus 200 ~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~ 236 (325)
.+..++.+++.|+....|..++..|..- |+.+.+++
T Consensus 37 ~~a~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~ 72 (187)
T 3sho_A 37 CRADHVIVVGMGFSAAVAVFLGHGLNSL-GIRTTVLT 72 (187)
T ss_dssp HHCSEEEEECCGGGHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred HhCCEEEEEecCchHHHHHHHHHHHHhc-CCCEEEec
Confidence 3446899999999999999999999876 88887775
No 199
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=23.20 E-value=30 Score=33.83 Aligned_cols=113 Identities=11% Similarity=-0.007 Sum_probs=61.1
Q ss_pred CCceeec-hhhH-HHHHHHHHHHhccC-CeEEEEecccccH-HHHHHHHHHHHhhcccccCCceeccceEEeccCcc--C
Q psy8699 49 KHRVFNT-PLSE-QGIVGFGIGLAVSG-ATAIAEIQFADYI-FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMA--V 122 (325)
Q Consensus 49 p~r~~~~-gIaE-~~~v~~a~GlA~~G-~~p~~~it~~~F~-~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~--~ 122 (325)
|.+|+.. |..= -..++.|.|+|++. -++++++ .++.. +..++.|. .+...+++.. +++..-.+. .
T Consensus 414 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i-~GDG~~~~~~~~L~-ta~~~~l~~~-------ivv~nN~~~~~~ 484 (589)
T 2pgn_A 414 PRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLG-TGDGALYYHFNEFR-VAVEHKLPVI-------TMVFTNESYGAN 484 (589)
T ss_dssp TTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHHHGGGHH-HHHHTTCCCE-------EEEEECSBCHHH
T ss_pred CCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEE-EeeHHHHhhHHHHH-HHHHhCCCeE-------EEEEECCCcccc
Confidence 5567763 2111 13567888888763 3566664 67743 33455554 4555555432 112211111 1
Q ss_pred CC------CC---CCCChhHH-HHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEe
Q psy8699 123 GH------GA---LYHSQSPE-AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFF 171 (325)
Q Consensus 123 g~------g~---th~~~~d~-~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i~ 171 (325)
+. +. +.....|. .+.+.+ |+..+...+..|+...++++++.++|++|-
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 542 (589)
T 2pgn_A 485 WTLMNHQFGQNNWTEFMNPDWVGIAKAF-GAYGESVRETGDIAGALQRAIDSGKPALIE 542 (589)
T ss_dssp HHHHHHHHSSCCSCBCCCCCHHHHHHHH-TCEEEECTTTCCHHHHHHHHHHHCSCEEEE
T ss_pred hHHHHhhcCCCccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 00 11111233 333333 667777789999999999999889999884
No 200
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=23.07 E-value=4.5e+02 Score=24.25 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=47.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCC-cEEEEecccccCCCHH-----HHHHHHhcc-CcEEEEecCCcCCChHHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGV-SCEVIDLVSILPWDRE-----TVFQSARKT-GRVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi-~~~vi~~~~l~P~d~~-----~l~~~~~~~-~~vivvEe~~~~gglg~~v~ 275 (325)
+=+|+++|- +..+..+|++.+++. |- ++.+..+.+-.|-+.+ .+..+-+.+ +..|..=+|. .|-....++
T Consensus 159 KPViLStGmaTl~Ei~~Ave~i~~~-Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt-~G~~~~~~A 236 (385)
T 1vli_A 159 RPMIFSTAGAEISDVHEAWRTIRAE-GNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHS-EHPTEAPCA 236 (385)
T ss_dssp SCEEEECTTCCHHHHHHHHHHHHTT-TCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECC-SSSSHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHC-CCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCC-CCchHHHHH
Confidence 447889984 678899999999987 76 7888887777776554 333333345 4455555563 332555555
Q ss_pred HHH
Q psy8699 276 ASI 278 (325)
Q Consensus 276 ~~l 278 (325)
+.-
T Consensus 237 AvA 239 (385)
T 1vli_A 237 AVR 239 (385)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 201
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=22.87 E-value=25 Score=27.23 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEE-cccC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRV-TGYD 297 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~-~g~~ 297 (325)
.|++.|++. |++.. -..-++++.+.+ ...+-||+++++. ..+... .+.++..+ ..++
T Consensus 47 ~a~~~l~~~-Gid~s---~~~ar~l~~~~~----~~~D~Ii~m~~~~----------~~~~p~----~~~~~~~~~~~i~ 104 (131)
T 1jf8_A 47 KAIEAMKEV-DIDIS---NHTSDLIDNDIL----KQSDLVVTLCSDA----------DNNCPI----LPPNVKKEHWGFD 104 (131)
T ss_dssp HHHHHHHHT-TCCCT---TCCCCBCCHHHH----HHCSEEEECSHHH----------HHHSCC----CCTTSEEEECCCC
T ss_pred HHHHHHHHc-CCCcc---cCccccCChHHh----ccCCEEEEcCcHH----------HhhCcC----CCCCcEEEEecCC
Confidence 355566676 88763 234466776644 4578899997531 111111 12222222 2677
Q ss_pred CCCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 298 TPFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 298 ~~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
+||..-.+.|.- .-+.|.+++..+++
T Consensus 105 DP~g~~~~~f~~-~~~~i~~~~~~l~~ 130 (131)
T 1jf8_A 105 DPAGKEWSEFQR-VRDEIKLAIEKFKL 130 (131)
T ss_dssp CCTTSCHHHHHH-HHHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHH-HHHHHHHHHHHHHh
Confidence 888543344444 56777777777765
No 202
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=22.61 E-value=1.9e+02 Score=24.91 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEeccccc--C-------------------------------C--CHHHHHHHHhccCc
Q psy8699 213 QVHVLREVAGLAKEQLGVSCEVIDLVSIL--P-------------------------------W--DRETVFQSARKTGR 257 (325)
Q Consensus 213 ~~~~a~~A~~~L~~~~gi~~~vi~~~~l~--P-------------------------------~--d~~~l~~~~~~~~~ 257 (325)
+...+..+++.|++. |.+++++++.... | + |.+.+.+.+...+.
T Consensus 18 t~~la~~~~~~l~~~-g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~ 96 (273)
T 1d4a_A 18 NYAMKEAAAAALKKK-GWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADL 96 (273)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHhC-CCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCE
Confidence 344566667778887 9999999997653 1 1 12234445777887
Q ss_pred EEEEecCCcCCChHHHHHHHHHh
Q psy8699 258 VIIAHEAPLTSGFGAELAASIQD 280 (325)
Q Consensus 258 vivvEe~~~~gglg~~v~~~l~e 280 (325)
||+.=-- +.+++.+.+-.++..
T Consensus 97 IV~~~P~-y~~s~Pa~LK~~iDr 118 (273)
T 1d4a_A 97 VIFQFPL-QWFGVPAILKGWFER 118 (273)
T ss_dssp EEEEEEC-BTTBCCHHHHHHHHH
T ss_pred EEEECch-hhccCCHHHHHHHHH
Confidence 7776555 568888888877754
No 203
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=22.60 E-value=4.4e+02 Score=23.94 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=46.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH-----HHHHHHhcc-CcEEEEecCCcCCChHHHHHH
Q psy8699 204 DVTLIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE-----TVFQSARKT-GRVIIAHEAPLTSGFGAELAA 276 (325)
Q Consensus 204 dv~ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~-----~l~~~~~~~-~~vivvEe~~~~gglg~~v~~ 276 (325)
+=+|+++|- +..+..+|++.+++. |-++.+.++.+-.|-+.+ .+..+-+.+ +..|..=+| .. |....+++
T Consensus 149 kPviLstGmat~~Ei~~Ave~i~~~-G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdH-t~-G~~~~~AA 225 (349)
T 2wqp_A 149 KPIILSTGMNSIESIKKSVEIIREA-GVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDH-TL-DNYACLGA 225 (349)
T ss_dssp SCEEEECTTCCHHHHHHHHHHHHHH-TCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECC-SS-SSHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCC-CC-cHHHHHHH
Confidence 346889984 678899999999987 878888776666665444 343333345 544555455 43 46655555
Q ss_pred HH
Q psy8699 277 SI 278 (325)
Q Consensus 277 ~l 278 (325)
.-
T Consensus 226 vA 227 (349)
T 2wqp_A 226 VA 227 (349)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 204
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=22.49 E-value=2.6e+02 Score=25.47 Aligned_cols=57 Identities=26% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEeccc---------------ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS---------------ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~---------------l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
+.++.|++.|.......+|++. . |+++-+++ .. ....|.+.+.+.+++.+ +++.|-.
T Consensus 24 ~~~I~ilGgG~lg~~l~~aa~~---l-G~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d-~i~~e~e 95 (403)
T 3k5i_A 24 SRKVGVLGGGQLGRMLVESANR---L-NIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCD-VVTAEIE 95 (403)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---H-TCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCS-EEEESSS
T ss_pred CCEEEEECCCHHHHHHHHHHHH---C-CCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCC-EEEECCC
Confidence 4678999988765555555544 4 99999888 32 12245678888887765 6777643
No 205
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.42 E-value=1.8e+02 Score=25.44 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=22.5
Q ss_pred CCcEEEEecccc--cCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVSI--LPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~l--~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++-+-+.|++.. ..++.+.+.++.++...|+-+=+.
T Consensus 126 ~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiK~s 163 (289)
T 2yxg_A 126 NLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEA 163 (289)
T ss_dssp SSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred CCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEeC
Confidence 566667776542 466777776665455667666554
No 206
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=22.22 E-value=1.5e+02 Score=27.18 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=51.4
Q ss_pred HHHHHHHHhcc----C-CeEEEEecccccH--H-HHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhH
Q psy8699 62 IVGFGIGLAVS----G-ATAIAEIQFADYI--F-PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSP 133 (325)
Q Consensus 62 ~v~~a~GlA~~----G-~~p~~~it~~~F~--~-ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d 133 (325)
.+..|.|+|++ | -++++++ +++.. + ..++.+ +.++..++|.. + ++.-...|.++.........+
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~-~GDGa~~~G~~~Eal-n~A~~~~lpvi--~----vv~NN~~g~~t~~~~~~~~~~ 216 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTL-YGDGAANQGQIFEAY-NMAALWKLPCI--F----ICENNRYGMGTSVERAAASTD 216 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEE-EETTGGGCHHHHHHH-HHHHHTTCCEE--E----EEEECSEETTEEHHHHCSCCC
T ss_pred hhHHHHHHHHHHHhcCCCceEEEE-ECchhhhccHHHHHH-HHHHHHCcCEE--E----EEECCCcccCCCcccccCCCC
Confidence 34556666654 2 3455553 77753 2 346666 46776666542 1 111111121111000011112
Q ss_pred HH-HHcCCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEe
Q psy8699 134 EA-YFAHTPGIKVVIPRGPYKAKGLLLSCIK----DKDPCIFF 171 (325)
Q Consensus 134 ~~-~~~~ip~~~v~~P~~~~e~~~~~~~a~~----~~~Pv~i~ 171 (325)
+. -.-.+|++.| .-.|+.++..+++.|++ .++|++|-
T Consensus 217 ~~~ra~g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe 258 (365)
T 2ozl_A 217 YYKRGDFIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILME 258 (365)
T ss_dssp GGGTTTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 21 1123666654 44589999999988875 58999984
No 207
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=21.97 E-value=2.8e+02 Score=23.92 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=35.7
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhhcCCc-EEEEecccccCCCHHH----HHHHHhccC-cEEEEecCCcC---CChHHH
Q psy8699 204 DVTLIGWGTQ-VHVLREVAGLAKEQLGVS-CEVIDLVSILPWDRET----VFQSARKTG-RVIIAHEAPLT---SGFGAE 273 (325)
Q Consensus 204 dv~ii~~G~~-~~~a~~A~~~L~~~~gi~-~~vi~~~~l~P~d~~~----l~~~~~~~~-~vivvEe~~~~---gglg~~ 273 (325)
+++.++.|.. ...++ +.+-.. |.+ +=+++-+.+..++... |.+.+++.+ .+|++=..... +.++..
T Consensus 58 ~V~av~~G~~~~~~~l---r~ala~-GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~ 133 (264)
T 1o97_C 58 EVVVVSVGPDRVDESL---RKCLAK-GADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGIS 133 (264)
T ss_dssp EEEEEEESCGGGHHHH---HHHHHT-TCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHH
T ss_pred eEEEEEeCchhHHHHH---HHHHhc-CCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHH
Confidence 7888999863 33222 222222 665 5555555555566543 334444322 34555444322 346666
Q ss_pred HHHHH
Q psy8699 274 LAASI 278 (325)
Q Consensus 274 v~~~l 278 (325)
+++.|
T Consensus 134 lA~~L 138 (264)
T 1o97_C 134 VASYL 138 (264)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66555
No 208
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=21.90 E-value=3e+02 Score=24.00 Aligned_cols=21 Identities=0% Similarity=0.020 Sum_probs=12.7
Q ss_pred HHHHHHHHhccCcEEEEecCC
Q psy8699 245 RETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 245 ~~~l~~~~~~~~~vivvEe~~ 265 (325)
.+.|.+.+++++-++++||.+
T Consensus 167 l~~i~~l~~~~~~~li~De~~ 187 (393)
T 3kgw_A 167 LDGFGELCHRYQCLLLVDSVA 187 (393)
T ss_dssp CTTHHHHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEECCc
Confidence 345666666666666666643
No 209
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.86 E-value=1.9e+02 Score=25.60 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=16.2
Q ss_pred CcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEec
Q psy8699 230 VSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHE 263 (325)
Q Consensus 230 i~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe 263 (325)
+-+-+.|++. =..++.+.+.++. +...|+-+=+
T Consensus 139 lPiilYn~P~~tg~~l~~~~~~~La-~~pnIvgiK~ 173 (303)
T 2wkj_A 139 LPMVVYNIPALSGVKLTLDQINTLV-TLPGVGALXQ 173 (303)
T ss_dssp CCEEEEECHHHHCCCCCHHHHHHHH-TSTTEEEEEE
T ss_pred CCEEEEeCccccCCCCCHHHHHHHh-cCCCEEEEeC
Confidence 5555555543 2345555555544 3445555544
No 210
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=21.81 E-value=79 Score=25.18 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP 265 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~ 265 (325)
.|++.|++. ||+. + ..-+++..+.+ ...+-||++++++
T Consensus 58 ~a~~~l~~~-Gid~---~-~~ar~l~~~~~----~~~DlIi~M~~~n 95 (157)
T 3n8i_A 58 RGQSCMKRH-GIPM---S-HVARQITKEDF----ATFDYILCMDESN 95 (157)
T ss_dssp HHHHHHHHT-TCCC---C-CCCCBCCHHHH----HHCSEEEESSHHH
T ss_pred HHHHHHHHc-CcCC---C-CceeECCHHHc----CCCCEEEEeCcHH
Confidence 345556666 8874 2 23466766543 5678899998865
No 211
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=21.76 E-value=1.3e+02 Score=23.99 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=48.0
Q ss_pred EEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCH----------HHHH---------------HHHhccCcEEE
Q psy8699 206 TLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDR----------ETVF---------------QSARKTGRVII 260 (325)
Q Consensus 206 ~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~----------~~l~---------------~~~~~~~~viv 260 (325)
++|.|.|......++++.+.+. +.+.++++....|++. +... ..+.+++.|++
T Consensus 16 ilIvY~S~tGnT~~vA~~Ia~~--l~~d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yD~iil 93 (171)
T 4ici_A 16 ILVAYFSATGTTARAAEKLGAA--VGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIGTYDVVFI 93 (171)
T ss_dssp EEEEECCSSSHHHHHHHHHHHH--HTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGGGCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHH--hCCCeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHhHCCEEEE
Confidence 4555778888888888888764 4567788888777652 1111 12456776666
Q ss_pred EecCCcCCChHHHHHHHHHhh
Q psy8699 261 AHEAPLTSGFGAELAASIQDK 281 (325)
Q Consensus 261 vEe~~~~gglg~~v~~~l~e~ 281 (325)
.=-- ..|++...+..++.+.
T Consensus 94 g~Pv-y~g~~~~~~~~fl~~~ 113 (171)
T 4ici_A 94 GYPI-WWDLAPRIINTFIEGH 113 (171)
T ss_dssp EEEC-BTTBCCHHHHHHHHHS
T ss_pred eccc-ccCCchHHHHHHHHHc
Confidence 6554 4588888888887654
No 212
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=21.52 E-value=53 Score=27.72 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=25.9
Q ss_pred CCcEEEEEechhHHH--HHHHHHHHHhhcCCcEEEEec
Q psy8699 202 GTDVTLIGWGTQVHV--LREVAGLAKEQLGVSCEVIDL 237 (325)
Q Consensus 202 g~dv~ii~~G~~~~~--a~~A~~~L~~~~gi~~~vi~~ 237 (325)
+.++++.-+|+.... +.+.++.|++. |.++.||=-
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~-g~eV~vv~T 41 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAE-GAEVRPVVS 41 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHT-TCEEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhC-CCEEEEEEe
Confidence 456788888876654 77888888887 888887743
No 213
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.49 E-value=1.8e+02 Score=25.58 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=17.2
Q ss_pred CCcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++-+-+.|++. =..++.+.+.++. +...|+-+=+.
T Consensus 138 ~lPiilYn~P~~tg~~l~~~~~~~La-~~pnIvgiKds 174 (301)
T 1xky_A 138 PLPVMLYNVPGRSIVQISVDTVVRLS-EIENIVAIKDA 174 (301)
T ss_dssp SSCEEEEECHHHHSSCCCHHHHHHHH-TSTTEEEEEEC
T ss_pred CCCEEEEeCccccCCCCCHHHHHHHH-cCCCEEEEEcC
Confidence 44555555543 2345555555544 34455555443
No 214
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=21.30 E-value=2e+02 Score=25.23 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=36.5
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhhcCCcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 202 GTDVTLIGWG----TQVHVLREVAGLAKEQLGVSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 202 g~dv~ii~~G----~~~~~a~~A~~~L~~~~gi~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|.|.+++..= ..-....+=.+.+.+..++-+-+.|++. =..++.+.+.++. +...|+-+=+.
T Consensus 96 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La-~~pnivgiK~s 163 (291)
T 3tak_A 96 GADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLA-EIPNIVGIKDA 163 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHT-TSTTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHH-cCCCEEEEEeC
Confidence 6666665532 1222333333333333367788888764 3577888887765 66778877765
No 215
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=21.26 E-value=4.7e+02 Score=23.77 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=42.6
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH-----HHHHHHhcc-CcEEEEecCCcCCC
Q psy8699 204 DVTLIGWG-TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE-----TVFQSARKT-GRVIIAHEAPLTSG 269 (325)
Q Consensus 204 dv~ii~~G-~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~-----~l~~~~~~~-~~vivvEe~~~~gg 269 (325)
+=+|+++| ++..+..+|++.+.+. |-++.++++.+-.|-+.+ .+..+-+.+ +..|-.=+|. .|+
T Consensus 136 KPviLstGmstl~Ei~~Ave~i~~~-g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt-~g~ 206 (350)
T 3g8r_A 136 KPVVASTAGARREDIDKVVSFMLHR-GKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHE-DPD 206 (350)
T ss_dssp SCEEEECTTCCHHHHHHHHHHHHTT-TCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECC-CSS
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCC-CCC
Confidence 34678888 5678899999999887 878888877777776654 333333346 4445454464 454
No 216
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.23 E-value=1.9e+02 Score=25.36 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhhcCCcEEEEecccc--cCCCHHHHHHHHhccCcEEEEecC
Q psy8699 202 GTDVTLIGWGT----QVHVLREVAGLAKEQLGVSCEVIDLVSI--LPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 202 g~dv~ii~~G~----~~~~a~~A~~~L~~~~gi~~~vi~~~~l--~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
|.|.+++..=. .-....+=.+.+.+..++-+-+.|++.. ..++.+.+.++.++...|+-+=+.
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds 163 (294)
T 2ehh_A 95 GADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKES 163 (294)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeC
Confidence 56666554321 2222333333333323677778887743 567888887776456777777655
No 217
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=21.15 E-value=2.2e+02 Score=24.22 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccC-----cEEEEecCCcCCChHHHHH
Q psy8699 202 GTDVTLIGWGTQVH-VLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTG-----RVIIAHEAPLTSGFGAELA 275 (325)
Q Consensus 202 g~dv~ii~~G~~~~-~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~-----~vivvEe~~~~gglg~~v~ 275 (325)
|++++|++-|..+. .|+-|..+.... +|.-+=|++.|+--.-++.|.++++... .++|+-.+ .-||-=++-.
T Consensus 87 gkrvii~gggaqv~qva~gai~eadrh-nirgerisvdt~p~vge~~l~~av~av~~lpr~~~lvlags-~mgg~i~~~v 164 (223)
T 1y7p_A 87 GKRVIILGGGALVSQVAIGAISEADRH-NLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLAGG-IMGGKITEEV 164 (223)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHH-HHTSCCEEEEEEECCSHHHHHHHHHHGGGSTTEEEEEEESS-BCCTHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHhhcchhhhc-ccccceeeeecceecCHHHHHHHHHHHhhccccceeeEecc-cccchHHHHH
Confidence 45789999998665 577777766554 5655556677765566777766655432 36777655 5566544444
Q ss_pred HHHHhhccccCCCCeEEE
Q psy8699 276 ASIQDKCFLSLEAPIRRV 293 (325)
Q Consensus 276 ~~l~e~~~~~~~~~v~~~ 293 (325)
..+.++ +.|+.++
T Consensus 165 ~~~~~~-----~i~vi~l 177 (223)
T 1y7p_A 165 KKLRKS-----GIRVISL 177 (223)
T ss_dssp HHHGGG-----TCEEEEE
T ss_pred HHHHHC-----CCeEEEe
Confidence 445544 3677766
No 218
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.02 E-value=1.9e+02 Score=26.00 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=16.1
Q ss_pred EEEech-hHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699 207 LIGWGT-QVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE 246 (325)
Q Consensus 207 ii~~G~-~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~ 246 (325)
|+++|+ .+.++++-++..++. |.+.-++-.+...+.+.+
T Consensus 107 iaGvg~~st~eai~la~~A~~~-Gadavlv~~P~Y~~~s~~ 146 (332)
T 2r8w_A 107 MAGIGALRTDEAVALAKDAEAA-GADALLLAPVSYTPLTQE 146 (332)
T ss_dssp EEEECCSSHHHHHHHHHHHHHH-TCSEEEECCCCSSCCCHH
T ss_pred EEecCCCCHHHHHHHHHHHHhc-CCCEEEECCCCCCCCCHH
Confidence 334443 334444444444443 444444444443333333
No 219
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=20.90 E-value=1.1e+02 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=25.3
Q ss_pred CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEE
Q psy8699 140 TPGIKVVIPRGPYKAKGLLLSCIKDKDPCIF 170 (325)
Q Consensus 140 ip~~~v~~P~~~~e~~~~~~~a~~~~~Pv~i 170 (325)
-+.+.++.|.+-+|++.+.+ .++++.||++
T Consensus 4 ~~~Ivv~~P~sy~Da~~I~d-~Lr~~~~Vvv 33 (87)
T 3p04_A 4 QSTIVPVELHSFEDAQVIGG-AFRDGDAVVF 33 (87)
T ss_dssp CCSCEEEECSSGGGHHHHHH-HHHTTCCEEE
T ss_pred CcEEEEEecCcHHHHHHHHH-HHHCCCEEEE
Confidence 46789999999999986554 7778999999
No 220
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=20.90 E-value=1.5e+02 Score=22.16 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=35.6
Q ss_pred cEEEEEec---hhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhc
Q psy8699 204 DVTLIGWG---TQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK 254 (325)
Q Consensus 204 dv~ii~~G---~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~ 254 (325)
++.++-.| +....+-+|.+.|++. |++..+=.+.|.--=|.+.+.+.+++
T Consensus 19 ~~sv~Plg~~~svs~~Va~~i~vi~~s-GL~y~~~pmgT~IEGe~devm~vvk~ 71 (106)
T 1vk8_A 19 SIKVVPAVEDGRLHEVIDRAIEKISSW-GMKYEVGPSNTTVEGEFEEIMDRVKE 71 (106)
T ss_dssp EEEEEESSCGGGHHHHHHHHHHHHHTT-CSCEEECSSCEEEEECHHHHHHHHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHc-CCCeEeCCCccEEEcCHHHHHHHHHH
Confidence 56677666 5667788889999998 99998777776644455666665554
No 221
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.78 E-value=3.6e+02 Score=23.12 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=59.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCC--------cCCChHHH
Q psy8699 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAP--------LTSGFGAE 273 (325)
Q Consensus 202 g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~--------~~gglg~~ 273 (325)
+.++.|++.|.......+.++.+. + + +..+-..+.+.+.+.+...+ ++++-... ..-|++..
T Consensus 188 ~~~l~i~G~g~~~~~l~~~~~~~~-~---~-----v~~~g~~~~~~l~~~~~~ad-v~v~ps~~~~~~~~~~~~E~~~~~ 257 (342)
T 2iuy_A 188 GRRLVLAGPAWEPEYFDEITRRYG-S---T-----VEPIGEVGGERRLDLLASAH-AVLAMSQAVTGPWGGIWCEPGATV 257 (342)
T ss_dssp TCCEEEESCCCCHHHHHHHHHHHT-T---T-----EEECCCCCHHHHHHHHHHCS-EEEECCCCCCCTTCSCCCCCCCHH
T ss_pred CcEEEEEeCcccHHHHHHHHHHhC-C---C-----EEEeccCCHHHHHHHHHhCC-EEEECCcccccccccccccCccHH
Confidence 457788888775555555444442 1 2 33345567777888887776 44443220 13577777
Q ss_pred HHHHHHhhccccCCCCeEEEcccCCCCcccccc----cC--CC-CHHHHHHHHHHHh
Q psy8699 274 LAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEP----FY--IP-DKWRCLEAVKQIT 323 (325)
Q Consensus 274 v~~~l~e~~~~~~~~~v~~~~g~~~~~~~~~~~----~~--l~-~~~~I~~~i~~~~ 323 (325)
+.++++- +.|+... .. +...+..+. .| .. +++.+++++.+++
T Consensus 258 ~~EAma~------G~PvI~s-~~-~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 258 VSEAAVS------GTPVVGT-GN-GCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLP 306 (342)
T ss_dssp HHHHHHT------TCCEEEC-CT-TTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSC
T ss_pred HHHHHhc------CCCEEEc-CC-CChHHHhcccCCCceEEcCCCHHHHHHHHHHHH
Confidence 8777753 3566422 21 123344433 23 22 7889988887764
No 222
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.54 E-value=2e+02 Score=25.38 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=20.0
Q ss_pred CCcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++-+-+.|++. =..++.+.+.++.++...|+-+=+.
T Consensus 138 ~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKds 175 (306)
T 1o5k_A 138 DLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEA 175 (306)
T ss_dssp SSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred CCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEeCC
Confidence 45566666553 2456666666655345566666544
No 223
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.51 E-value=2e+02 Score=25.11 Aligned_cols=35 Identities=14% Similarity=-0.024 Sum_probs=22.0
Q ss_pred CCcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++-+-+.|++. =..++.+.+.++. +...|+-+=+.
T Consensus 130 ~lPiilYn~P~~tg~~l~~~~~~~La-~~pnIvgiK~s 166 (293)
T 1f6k_A 130 GSNMIVYSIPFLTGVNMGIEQFGELY-KNPKVLGVKFT 166 (293)
T ss_dssp CCCEEEEECHHHHCCCCCHHHHHHHH-TSTTEEEEEEC
T ss_pred CCCEEEEECccccCcCCCHHHHHHHh-cCCCEEEEEEC
Confidence 56677777653 2466777776665 45667766554
No 224
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=20.34 E-value=40 Score=26.13 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCcEEEEecccccCCCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCC
Q psy8699 219 EVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDT 298 (325)
Q Consensus 219 ~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~ 298 (325)
.|++.|++. ||+.+-...+.+.+.+ +...+-||++++...... .. .... .....+ .+++
T Consensus 48 ~a~~~l~e~-Gid~s~~~sr~l~~~~-------~~~~DlIi~md~~~~~~p--~~---~~~~-------~~~~~~-~i~D 106 (134)
T 2l17_A 48 TAIAMMEEV-GIDISGQTSDPIENFN-------ADDYDVVISLCGCGVNLP--PE---WVTQ-------EIFEDW-QLED 106 (134)
T ss_dssp HHHHHHHTT-TCCCSSCCCCCGGGCC-------GGGCSEEEECSCSCSCCC--TH---HHHS-------SEEEEC-CCCC
T ss_pred HHHHHHHHc-CCCcccCccccCChHH-------hccCCEEEEeCchhhhCc--cc---ccCC-------CeeccC-CCCC
Confidence 355667776 8887433344444433 356789999944321110 00 1111 112233 7778
Q ss_pred CCcccccccCCCCHHHHHHHHHHHhh
Q psy8699 299 PFPHIFEPFYIPDKWRCLEAVKQITR 324 (325)
Q Consensus 299 ~~~~~~~~~~l~~~~~I~~~i~~~~~ 324 (325)
||..-.+.|.- .-+.|.+++..+++
T Consensus 107 P~~~~~~~f~~-~~~~i~~~v~~ll~ 131 (134)
T 2l17_A 107 PDGQSLEVFRT-VRGQVKERVENLIA 131 (134)
T ss_dssp CTTCCHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 87644444444 55677777776654
No 225
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.22 E-value=2e+02 Score=25.34 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCcEEEEeccc--ccCCCHHHHHHHHhccCcEEEEecC
Q psy8699 229 GVSCEVIDLVS--ILPWDRETVFQSARKTGRVIIAHEA 264 (325)
Q Consensus 229 gi~~~vi~~~~--l~P~d~~~l~~~~~~~~~vivvEe~ 264 (325)
++-+-+.|++. =.+++.+.+.++. +...|+-+=+.
T Consensus 142 ~lPiilYn~P~~tg~~l~~~~~~~La-~~pnIvgiKds 178 (304)
T 3cpr_A 142 EVPICLYDIPGRSGIPIESDTMRRLS-ELPTILAVXDA 178 (304)
T ss_dssp CSCEEEEECHHHHSSCCCHHHHHHHT-TSTTEEEEEEC
T ss_pred CCCEEEEeCccccCcCCCHHHHHHHH-cCCCEEEEecC
Confidence 56677777653 3467777776654 45667766554
No 226
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=20.18 E-value=2.1e+02 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=31.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHHHH
Q psy8699 201 AGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV 248 (325)
Q Consensus 201 ~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~~l 248 (325)
.+.+++||+.|.. ++|.+..|.+. |.++.++.-..-.+.+.+..
T Consensus 151 ~~~~vvViGgG~i---g~e~A~~l~~~-G~~Vt~v~~~~~~~~~~~~~ 194 (314)
T 4a5l_A 151 RNKVLMVVGGGDA---AMEEALHLTKY-GSKVIILHRRDAFRASKTMQ 194 (314)
T ss_dssp TTSEEEEECSSHH---HHHHHHHHTTT-SSEEEEECSSSSCCSCHHHH
T ss_pred CCCeEEEECCChH---HHHHHHHHHHh-CCeeeeecccccccccchhh
Confidence 3568999998874 66778888887 99999997554444444433
No 227
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.06 E-value=1.2e+02 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=23.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecc
Q psy8699 203 TDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLV 238 (325)
Q Consensus 203 ~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~ 238 (325)
.+++|+++|.+... .++.|.+. |.++.+++..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~-g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLAS-DIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHT-TCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHC-CCCEEEEECC
Confidence 46899999987665 34566666 8899888753
Done!