RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8699
(325 letters)
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 549 bits (1417), Expect = 0.0
Identities = 219/301 (72%), Positives = 271/301 (90%)
Query: 25 VLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFAD 84
V+FGEDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFAD
Sbjct: 42 VIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFAD 101
Query: 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIK 144
YIFPAFDQIVNEAAKYRYRSG+ F+CG+LTIR+P VGHGALYHSQSPEA+FAH PGIK
Sbjct: 102 YIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIK 161
Query: 145 VVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTD 204
VVIPR P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP + Y +PL +A+++ G+D
Sbjct: 162 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSD 221
Query: 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264
VTL+ WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+ +S KTGR++I+HEA
Sbjct: 222 VTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEA 281
Query: 265 PLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324
PLT GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++
Sbjct: 282 PLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMIN 341
Query: 325 Y 325
Y
Sbjct: 342 Y 342
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 529 bits (1366), Expect = 0.0
Identities = 148/302 (49%), Positives = 196/302 (64%), Gaps = 3/302 (0%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
V+ GEDVG GGVF + GL +KYG RV +TPLSE IVG +G+A G +AEIQFA
Sbjct: 25 VVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFA 84
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
DYIFP FDQ+V++ AK RYRSG QF+ L +R P G +HSQSPEA+F HT G+
Sbjct: 85 DYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGL 143
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGT 203
KVV PY AKGLL + I+D+DP +F EPK LYR+ E+VPE+ Y LP+ KA + G
Sbjct: 144 KVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGK 203
Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
D+TLI +GT + + + A + GVS EV+DL +++PWD E V S KTGRV++ +
Sbjct: 204 DLTLICYGTVMPEVLQAAAELAKA-GVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSD 262
Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQIT 323
AP + F +E+AA+I + L AP RVTG+DTP+P+ + Y+P R L A K+
Sbjct: 263 APRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQDKLYLPTVTRILNAAKRAL 322
Query: 324 RY 325
Y
Sbjct: 323 DY 324
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 524 bits (1353), Expect = 0.0
Identities = 138/303 (45%), Positives = 191/303 (63%), Gaps = 7/303 (2%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
V+ GEDVG GGVF + GL E++G RV +TPL+E GI+GF +G+A++G +AEIQF
Sbjct: 72 VVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFV 131
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
D+I+ D+++N AK RYRSG + L +R P + G LYHS SPEA F HTPG+
Sbjct: 132 DFIWLGADELLNHIAKLRYRSGGNYKAP-LVVRTPVGSGTRGGLYHSNSPEAIFVHTPGL 190
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGT 203
VV+P PY AKGLL + I+ DP +F EPK+LYRA E+VPE Y + + KA + G
Sbjct: 191 VVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGD 250
Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
DVTL+ +G VH E A E++ S EV+DL ++ P D +TV +S KTGR+IIAH+
Sbjct: 251 DVTLVTYGAVVHKALEAA----ERVKASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHD 306
Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP-HIFEPFYIPDKWRCLEAVKQI 322
+P T G GAE+ A + +K L AP+ R+ G D P + Y P R ++A++ +
Sbjct: 307 SPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAADAAYAPTVERIIKAIEYV 366
Query: 323 TRY 325
RY
Sbjct: 367 MRY 369
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 514 bits (1326), Expect = 0.0
Identities = 153/315 (48%), Positives = 199/315 (63%), Gaps = 22/315 (6%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
V++G+DVG FGGVFRC+ GLQ KYGK RVF+ P+SE GIVG +G+ G + EIQFA
Sbjct: 26 VVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFA 85
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
DY +PA DQIV+E A+ RYRS +F LT+R PC +G HSQSPEA F G+
Sbjct: 86 DYFYPASDQIVSEMARLRYRSAGEFIAP-LTLRMPCGGGIYGGQTHSQSPEAMFTQVCGL 144
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVE----------------DVPED 187
+ V+P PY AKGLL++ I+ DP IF EPK LY + VP+
Sbjct: 145 RTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG 204
Query: 188 YYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET 247
YY +PLDKA I G DV+++ +GT V+V + A E+ GV EVIDL S+ P D +T
Sbjct: 205 YYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA----EESGVDAEVIDLRSLWPLDLDT 260
Query: 248 VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPF 307
+ +S +KTGR ++ HEA T GFGAEL + +Q+ CF LEAPI RVTG+DTP+PH E
Sbjct: 261 IVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQEWA 320
Query: 308 YIPDKWRCLEAVKQI 322
Y P R A+K++
Sbjct: 321 YFPGPSRVGAALKKV 335
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 508 bits (1312), Expect = 0.0
Identities = 130/303 (42%), Positives = 184/303 (60%), Gaps = 4/303 (1%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
++FGEDVG GGVFR + GLQ ++G+ RVF+TPL+E GI G IGLA+ G + EIQF
Sbjct: 24 LIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFF 83
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
+++ D I + A+ RYR+G ++ +TIR+P H HS S E A PG+
Sbjct: 84 GFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGGVHTPELHSDSLEGLVAQQPGL 142
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGT 203
KVVIP PY AKGLL+S I+D DP IF E LYR+ ++VPE Y +P+ KADI G
Sbjct: 143 KVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGK 202
Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
D+T+I +G VH + A +++ G+S EV+DL ++ P D ET+ S KTGR I+ E
Sbjct: 203 DITIIAYGAMVHESLKAAAELEKE-GISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQE 261
Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHI-FEPFYIPDKWRCLEAVKQI 322
A +G A + A I ++ LSLEAP+ RV DT +P E ++P+ +E K++
Sbjct: 262 AQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVWLPNFKDVIETAKKV 321
Query: 323 TRY 325
+
Sbjct: 322 MNF 324
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 373 bits (961), Expect = e-130
Identities = 109/307 (35%), Positives = 156/307 (50%), Gaps = 13/307 (4%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
L GE+V + G ++ S GL +KYG R+ +TP+SE G G +G A++G I E
Sbjct: 36 FLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTF 95
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
++ A DQ++N AAK Y SG + R P A A HSQ A++ H PG+
Sbjct: 96 NFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGL 154
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDY----YELPLDKADIL 199
KVV P AKGL+ S I+D +P + E +++Y + P + + +P+ KA I
Sbjct: 155 KVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP-FEFPPEAQSKDFLIPIGKAKIE 213
Query: 200 VAGTDVTLIGWGTQVHVLREVAG-LAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRV 258
GT +T++ V E A L+KE GV CEVI++ +I P D ET+ S KT +
Sbjct: 214 RQGTHITVVSHSRPVGHCLEAAAVLSKE--GVECEVINMRTIRPMDMETIEASVMKTNHL 271
Query: 259 IIAHEAPLTSGFGAELAASI-QDKCFLSLEAPIRRVTGYDTPFP--HIFEPFYIPDKWRC 315
+ G GAE+ A I + F L+AP RVTG D P P I E IP
Sbjct: 272 VTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDI 331
Query: 316 LEAVKQI 322
+ A+K+
Sbjct: 332 IFAIKKT 338
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 51.4 bits (124), Expect = 2e-07
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYY-ELPL 193
++ PG+++ +P+ + +G+L P P R VP + +L
Sbjct: 441 SFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGPFAIRYP----RGNTAQVPAGTWPDLKW 496
Query: 194 DKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSAR 253
+ + L G DV ++ G + + A V++ + P D E + +
Sbjct: 497 GEWERLKGGDDVVILAGGKALDYALKAAEDLPGV-----GVVNARFVKPLDEEMLREVGG 551
Query: 254 KTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRR 292
+ +I + + GFG + ++ +L +R
Sbjct: 552 RARALITVEDNTVVGGFGGAVLEALNSM---NLHPTVRV 587
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 49.9 bits (120), Expect = 6e-07
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 161 CIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGT--DVTLIGWGTQVHVLR 218
K C R + + + + +A +++ VT+IG G +H
Sbjct: 459 AANTKGICFI----RTSRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEAL 514
Query: 219 EVA-GLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSG 269
A L KE ++ V+D +I P DR+ + SAR T I+ E G
Sbjct: 515 AAAELLKKE--KINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEG 564
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 49.0 bits (118), Expect = 1e-06
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 15/160 (9%)
Query: 135 AYFAHTPGIKVVIPRGPYKAKGLLLSCIK-DKDPCIFFEPKVLYRAAVEDVP-EDYYELP 192
+Y P + ++ P + + +L + + P P R V +LP
Sbjct: 438 SYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYP----RGNAVGVELTPLEKLP 493
Query: 193 LDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSA 252
+ K + G + ++ +GT + +VA E L + ++D+ + P D + + A
Sbjct: 494 IGKGIVKRRGEKLAILNFGTLMPEAAKVA----ESL--NATLVDMRFVKPLDEALILEMA 547
Query: 253 RKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRR 292
++ E + G G+ + + P+
Sbjct: 548 ASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLN 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 55/291 (18%), Positives = 88/291 (30%), Gaps = 117/291 (40%)
Query: 60 QGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYR----YRSGNQFSCGNL-- 113
+G G GL + A A + + +F V +A R + +L
Sbjct: 268 KGATGHSQGLVTAVAIAETD------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 114 TIRAPCMAVGHGALYHSQSP------------EAYFAHT-----PGIKVVI-----PR-- 149
+I + G SP + Y T G +V I +
Sbjct: 322 SILEDSLENNEGVP----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 150 ---GPYKA-KGLLLSCIKDKDPC------IFFE---PKV--------------LYRAAVE 182
GP ++ GL L+ K K P I F K L A +
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 183 DVPEDYYELPLDKADILVAGTDVTLIGWGTQVHV--------LREVAGLAKEQLGVSCEV 234
+ +D L K ++ D+ Q+ V LR ++G E++
Sbjct: 438 LINKD-----LVKNNVSFNAKDI-------QIPVYDTFDGSDLRVLSGSISERI------ 479
Query: 235 IDLVSILP--WDRETVFQS---------------------ARKTG-RVIIA 261
+D + LP W+ T F++ TG RVI+A
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 40.8 bits (95), Expect = 6e-04
Identities = 52/262 (19%), Positives = 83/262 (31%), Gaps = 71/262 (27%)
Query: 60 QGI--VGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRA 117
QG G G+ L + A + N A + ++ FS ++ I
Sbjct: 1624 QGSQEQGMGMDLYKT--------------SKAAQDVWNRADNH-FKDTYGFSILDIVINN 1668
Query: 118 PCMAVGHGALYHSQS-PEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPK-V 175
P H + E Y A I G K + + + F K +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMI---FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 176 LYR-------------AAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAG 222
L AA ED+ + +P D AG H L E A
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDL-KSKGLIPADAT---FAG------------HSLGEYAA 1769
Query: 223 LAKEQLGVSC-EVIDLVSILPWDRETVFQSAR-KTGRVIIAHEAPLTSGFG------AEL 274
LA S +V+ + S++ E VF R T +V + + S +G +
Sbjct: 1770 LA------SLADVMSIESLV----EVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 275 AASIQDKCFLSLEAPIRRVTGY 296
AAS + + + + TG+
Sbjct: 1818 AASFSQEALQYVVERVGKRTGW 1839
Score = 29.2 bits (65), Expect = 2.4
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 26/91 (28%)
Query: 19 LSSQGGVLFGEDVGFGGV----FRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGA 74
L+S V+ E + V +R G P E G +G+ +A++
Sbjct: 1770 LASLADVMSIESL----VEVVFYR---------GMTMQVAVPRDELGRSNYGM-IAINPG 1815
Query: 75 TAIAEIQFADYIFPAFDQIVNEAAKYRYRSG 105
A A +V K R+G
Sbjct: 1816 RVAASFSQE-----ALQYVVERVGK---RTG 1838
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 31.0 bits (71), Expect = 0.46
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 177 YRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVID 236
+D+ Y L+ A+I V + G + +E+ G+ ++
Sbjct: 274 IEKNKKDIFT-YETYELEDAEIGV-------VATGIVARSALRAVKMLREE-GIKAGLLK 324
Query: 237 LVSILPWDRETVFQSARKTGRVIIA 261
+ +I P+D E + + A + ++ +
Sbjct: 325 IETIWPFDFELIERIAERVDKLYVP 349
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 29.3 bits (66), Expect = 0.65
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
D+T + WG+Q + +V KE+ G+S ++ L P+ E V VI E
Sbjct: 15 DITFVTWGSQKGPILDVIEDLKEE-GISANLLYLKMFSPFPTEFVKNVLSSANLVIDV-E 72
Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGYD-TPFP 301
+ T+ + ++ Y+
Sbjct: 73 SNYTAQAAQMIKLYT-------GIDIKNKILKYNGRHMT 104
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 30.3 bits (69), Expect = 1.0
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 43 LQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATA--IAEIQFADYIFPA---FDQ-IVNE 96
+ G RV+++ LSE+ ++ F G A + I E QF D+ A DQ I +
Sbjct: 645 IHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSG 704
Query: 97 AAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPE 134
K+ G L + P HG Y Q PE
Sbjct: 705 EQKWGRMCG-------LVMLLP-----HG--YEGQGPE 728
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.5
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 82 FADYIF---PAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSP---EA 135
+ YI P ++++VN + + I + + AL EA
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPK------IEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 136 Y 136
+
Sbjct: 584 H 584
Score = 28.3 bits (62), Expect = 4.2
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 45 EKYGKHRVFNTPLSEQ---GIVGF----GIGLAVSGATAIAEIQFADYIFPAFDQIVNEA 97
+ Y + N P E+ I+ F L S T + ++ A + + I EA
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIA--LMAEDEAIFEEA 583
Query: 98 AK 99
K
Sbjct: 584 HK 585
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 28.3 bits (64), Expect = 4.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 48 GKHRVFNTPLSEQGIVGF--GIGLAVSGATAIAEIQFAD 84
GK V+N+ LSE VGF G + A + E QF D
Sbjct: 582 GKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD 620
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 26.8 bits (59), Expect = 5.1
Identities = 1/26 (3%), Positives = 10/26 (38%)
Query: 234 VIDLVSILPWDRETVFQSARKTGRVI 259
+ ++ +++P + + +
Sbjct: 72 LYEIPALVPAGLLALIEGHLAGLGLF 97
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 27.9 bits (63), Expect = 5.6
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 20/93 (21%)
Query: 48 GKHRVFNTPLSEQGIVGF--GIGLAVSGATAIAEIQFADYIFPA---FDQ-IVNEAAKYR 101
GK V+N+ LSE VGF G + A + E QF D++ A D+ I + AK+
Sbjct: 827 GKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWG 886
Query: 102 YRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPE 134
S + + P HG + Q P+
Sbjct: 887 QLSD-------VVLLLP-----HG--HEGQGPD 905
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 27.6 bits (62), Expect = 6.2
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 201 AGTDVTLIGWGTQVHVLREVAGL 223
AG +V LI V + GL
Sbjct: 41 AGHEVILIARPQHVQAIEA-TGL 62
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis,
leucine biosynthesis, structural genomics, NPPSFA; 2.10A
{Methanocaldococcus jannaschii}
Length = 170
Score = 26.9 bits (60), Expect = 7.6
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 173 PKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSC 232
P L + + E++ + + + D++VAG + G G+ RE A +A + G+
Sbjct: 30 PYELASHCMAGIDENFPK-KVKEGDVIVAGEN---FGCGSS----REQAVIAIKYCGIKA 81
Query: 233 EVI 235
VI
Sbjct: 82 -VI 83
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 26.4 bits (58), Expect = 7.7
Identities = 1/26 (3%), Positives = 10/26 (38%)
Query: 234 VIDLVSILPWDRETVFQSARKTGRVI 259
+ ++ +++P + + +
Sbjct: 87 LYEIPALVPAGLLALIEGHLAGLGLF 112
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 26.9 bits (60), Expect = 8.9
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 201 AGTDVTLIGWGTQVHVLRE 219
AG + ++ G + L+
Sbjct: 25 AGEAINVLARGATLQALQT 43
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 27.2 bits (61), Expect = 9.1
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 176 LYRAAVEDV----PE--DYYEL------PLDKADILVAGTDVTLIGWGTQVHVLREVAGL 223
++ VE + PE Y + D+ + V +D++ + + R++
Sbjct: 341 IFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ 400
Query: 224 AKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVI 259
K+++ V+ +V LV + ++ QS K RV
Sbjct: 401 LKDEILVTPKV-KLV-----KKGSLPQSEGKAVRVK 430
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.438
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,224,899
Number of extensions: 324764
Number of successful extensions: 712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 29
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)