RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8699
(325 letters)
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 168 bits (425), Expect = 8e-52
Identities = 133/163 (81%), Positives = 152/163 (93%)
Query: 25 VLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFAD 84
V+FGEDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFAD
Sbjct: 41 VIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFAD 100
Query: 85 YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIK 144
YIFPAFDQIVNEAAKYRYRSG+ F+CG+LTIR+P VGHGALYHSQSPEA+FAH PGIK
Sbjct: 101 YIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIK 160
Query: 145 VVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPED 187
VVIPR P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP +
Sbjct: 161 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIE 203
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 164 bits (415), Expect = 2e-50
Identities = 87/172 (50%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
V++G+DVG FGGVFRC+ GLQ KYGK RVF+ P+SE GIVG +G+ G + EIQFA
Sbjct: 26 VVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFA 85
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
DY +PA DQIV+E A+ RYRS +F T+R PC +G HSQSPEA F G+
Sbjct: 86 DYFYPASDQIVSEMARLRYRSAGEFIAPL-TLRMPCGGGIYGGQTHSQSPEAMFTQVCGL 144
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDK 195
+ V+P PY AKGLL++ I+ DP IF EPK LY + D P K
Sbjct: 145 RTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFD-GHHDRPVTPWSK 195
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 161 bits (408), Expect = 2e-49
Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 2/170 (1%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
++FGEDVG GGVFR + GLQ ++G+ RVF+TPL+E GI G IGLA+ G + EIQF
Sbjct: 24 LIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFF 83
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
+++ D I + A+ RYR+G ++ TIR+P H HS S E A PG+
Sbjct: 84 GFVYEVMDSICGQMARIRYRTGGRYHMPI-TIRSPFGGGVHTPELHSDSLEGLVAQQPGL 142
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPL 193
KVVIP PY AKGLL+S I+D DP IF E LYR+ ++VPE Y +P+
Sbjct: 143 KVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 158 bits (401), Expect = 2e-48
Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
V+ GEDVG GGVF + GL E++G RV +TPL+E GI+GF +G+A++G +AEIQF
Sbjct: 29 VVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFV 88
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
D+I+ D+++N AK RYRSG + L +R P + G LYHS SPEA F HTPG+
Sbjct: 89 DFIWLGADELLNHIAKLRYRSGGNYKA-PLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGL 147
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPE 186
VV+P PY AKGLL + I+ DP +F EPK+LYRA E+VPE
Sbjct: 148 VVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVPE 190
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 151 bits (381), Expect = 2e-45
Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
L GE+V + G ++ S GL +KYG R+ +TP+SE G G +G A++G I E
Sbjct: 25 FLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTF 84
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
++ A DQ++N AAK Y SG + R P A A HSQ A++ H PG+
Sbjct: 85 NFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGL 143
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELP 192
KVV P AKGL+ S I+D +P + E +++Y + P +
Sbjct: 144 KVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP-FEFPPEAQSKD 191
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 134 bits (339), Expect = 3e-39
Identities = 92/164 (56%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 25 VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
V+ GEDVG GGVF + GL +KYG RV +TPLSE IVG +G+A G +AEIQFA
Sbjct: 24 VVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFA 83
Query: 84 DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
DYIFP FDQ+V++ AK RYRSG QF+ L +R P G +HSQSPEA+F HT G+
Sbjct: 84 DYIFPGFDQLVSQVAKLRYRSGGQFTA-PLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGL 142
Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPED 187
KVV PY AKGLL + I+D+DP +F EPK LYR+ E+VPE+
Sbjct: 143 KVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEE 186
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 125 bits (314), Expect = 4e-36
Identities = 86/137 (62%), Positives = 119/137 (86%)
Query: 189 YELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV 248
Y +PL +A+++ G+DVTL+ WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+
Sbjct: 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI 61
Query: 249 FQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFY 308
+S KTGR++I+HEAPLT GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFY
Sbjct: 62 CKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFY 121
Query: 309 IPDKWRCLEAVKQITRY 325
IPDKW+C +A++++ Y
Sbjct: 122 IPDKWKCYDALRKMINY 138
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 112 bits (281), Expect = 3e-31
Identities = 66/135 (48%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 188 YYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRET 247
YY +PLDKA I G DV+++ +GT V+V + A E+ GV EVIDL S+ P D +T
Sbjct: 1 YYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA----EESGVDAEVIDLRSLWPLDLDT 56
Query: 248 VFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPF 307
+ +S +KTGR ++ HEA T GFGAEL + +Q+ CF LEAPI RVTG+DTP+PH E
Sbjct: 57 IVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQEWA 116
Query: 308 YIPDKWRCLEAVKQI 322
Y P R A+K++
Sbjct: 117 YFPGPSRVGAALKKV 131
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 106 bits (265), Expect = 5e-29
Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Query: 189 YELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV 248
Y LP+ KA + G D+TLI +GT + A + GVS EV+DL +++PWD E V
Sbjct: 2 YTLPIGKAALRREGKDLTLICYGTVMPE-VLQAAAELAKAGVSAEVLDLRTLMPWDYEAV 60
Query: 249 FQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFY 308
S KTGRV++ +AP + F +E+AA+I + L AP RVTG+DTP+P+ + Y
Sbjct: 61 MNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQDKLY 120
Query: 309 IPDKWRCLEAVKQITRY 325
+P R L A K+ Y
Sbjct: 121 LPTVTRILNAAKRALDY 137
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 101 bits (252), Expect = 3e-27
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 195 KADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARK 254
KADI G D+T+I +G VH + A E+ G+S EV+DL ++ P D ET+ S K
Sbjct: 2 KADIKREGKDITIIAYGAMVHESLK-AAAELEKEGISAEVVDLRTVQPLDIETIIGSVEK 60
Query: 255 TGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPH-IFEPFYIPDKW 313
TGR I+ EA +G A + A I ++ LSLEAP+ RV DT +P E ++P+
Sbjct: 61 TGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQAESVWLPNFK 120
Query: 314 RCLEAVKQITRY 325
+E K++ +
Sbjct: 121 DVIETAKKVMNF 132
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 96.0 bits (238), Expect = 5e-25
Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 189 YELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETV 248
Y + + KA + G DVTL+ +G VH E A E++ S EV+DL ++ P D +TV
Sbjct: 2 YVVEIGKARVAREGDDVTLVTYGAVVHKALEAA----ERVKASVEVVDLQTLNPLDFDTV 57
Query: 249 FQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHI-FEPF 307
+S KTGR+IIAH++P T G GAE+ A + +K L AP+ R+ G D P I +
Sbjct: 58 LKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAADAA 117
Query: 308 YIPDKWRCLEAVKQITRY 325
Y P R ++A++ + RY
Sbjct: 118 YAPTVERIIKAIEYVMRY 135
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 91.4 bits (226), Expect = 3e-23
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 191 LPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQ 250
+P+ KA I GT +T++ V A + GV CEVI++ +I P D ET+
Sbjct: 2 IPIGKAKIERQGTHITVVSHSRPVGHC-LEAAAVLSKEGVECEVINMRTIRPMDMETIEA 60
Query: 251 SARKTGRVIIAHEAPLTSGFGAELAASIQ-DKCFLSLEAPIRRVTGYDTPFPH--IFEPF 307
S KT ++ G GAE+ A I F L+AP RVTG D P P+ I E
Sbjct: 61 SVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDN 120
Query: 308 YIPDKWRCLEAVKQI 322
IP + A+K+
Sbjct: 121 SIPQVKDIIFAIKKT 135
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 45.7 bits (108), Expect = 1e-06
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 11/119 (9%)
Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
+ ++ G+ + EV + G +I + P+ E F + + +VI +
Sbjct: 12 ERVIVSMGSSCETIEEVINHLAAK-GEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLD 70
Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGY--------DTP--FPHIFEPFYIPDK 312
G + F+ + ++ +P +++ K
Sbjct: 71 RTKEPGAPGDPLYLDVCSAFVERGEAMPKILAGRYGLGSKEFSPAMVKSVYDNMSGAKK 129
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 28.3 bits (62), Expect = 1.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 172 EPKVLYRAAVEDVPEDYYELPLD 194
V+Y D PE Y+ LP D
Sbjct: 220 GTHVMYVLHHADQPELYHGLPKD 242
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 25.8 bits (56), Expect = 5.5
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVI--IA 261
D+ L+ G++V + E A + + V+ L +D++ + + ++
Sbjct: 22 DIILVATGSEVSLSVEAAKTLAAK-NIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMS 80
Query: 262 HEAPLTSGFGAELAASI 278
E T+ +G S
Sbjct: 81 VEVLATTCWGKYAHQSF 97
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 25.4 bits (55), Expect = 6.7
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 202 GTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIA 261
+ ++ G++V + + A +L V + + +D + +
Sbjct: 18 DLQLVIVASGSEVSLAVDAAKALSGELRVRV--VSMPCQELFDAQPDTYRQAVLPAGVPV 75
Query: 262 H--EAPLTSGFGAELAASIQDKCF 283
EA ++ G+ A + F
Sbjct: 76 VSVEAYVSFGWEKYSHAHVGMSGF 99
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 26.1 bits (57), Expect = 7.2
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 243 WDRETVFQSARKTGRVIIAHEAPLT 267
W E +FQ+AR ++I +
Sbjct: 250 WGDEQLFQTAR---LILIGETIKIV 271
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 25.7 bits (56), Expect = 8.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 243 WDRETVFQSARKTGRVIIAH 262
W E +FQ+++
Sbjct: 251 WGDEQLFQTSKLILIGETIK 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.438
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,855
Number of extensions: 59047
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 20
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)