BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8700
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/175 (81%), Positives = 155/175 (88%), Gaps = 3/175 (1%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
SNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQITDTTG
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
SHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG ++ SIPIMLVGN
Sbjct: 61 SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIMLVGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
KCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SL
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 172
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 273 bits (697), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 145/202 (71%), Positives = 170/202 (84%), Gaps = 6/202 (2%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPTIEDTYRQVISC+K++CTLQIT
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 61
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DTTGSHQFPAMQRLSISKGHAFILV+S TS+QSLEEL PI+++I + KG + IP+M
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVM 118
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
LVGNKCDET+ REV E +A A+ W C FMETSAK N+NVKELF ELL LE RN+SL
Sbjct: 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177
Query: 181 LEKK--GQLKGTRKLKEKCSVM 200
++ K G+ K T ++K KC++M
Sbjct: 178 IDGKRSGKQKRTDRVKGKCTLM 199
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ + + C L+I DT G+
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
QF AM+ L + G F LVYS T++ + +L+ + E I K + +P++LVGNKC
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTDDVPMILVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
D + R V +G+ A+ W C F+E+SAK+ NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 162
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ + + C L+I DT G+
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
QF AM+ L + G F LVYS T++ + +L+ + E I K + +P++LVGNKC
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTEDVPMILVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
D + R V +G+ A+ W C F+E+SAK+ NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV G+GGVGKS+L ++FV+G F + Y PTIED+YR+ + + C L+I DT G+
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
QF AM+ L + G F LVYS T++ + +L+ + E I K + +P++LVGNKC
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTEDVPMILVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
D + R V +G+ A+ W C F+E+SAK+ NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 105/164 (64%), Gaps = 5/164 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV G+ GVGKS+L ++FV+G F E Y PTIED+YR+ + + C L+I DT G+
Sbjct: 5 EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
QF AM+ L + G F LVYS T++ + +L+ + E I K + +P++LVGNKC
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTDDVPMILVGNKC 120
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
D + R V +G+ A+ W C F+E+SAK+ NV E+F +L+
Sbjct: 121 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 164
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++FV GTF E Y PTIED YR+ I + + L+I DT G+ QF +M+ L I G
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
FILVYS ++QS ++++P+ + I K +P++LVGNK D REVS++EG
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVK----RYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
A A+ WGC FMETSAK+ V ELFAE++
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+VV+ G VGK+SL +FV+G F E Y PT+E+TY ++++ K+ L + DT G ++
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
+ I H ++LVYS TS S + + +++ + E G +P++LVGNK D
Sbjct: 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR----VPVVLVGNKADL 141
Query: 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
+ REV A EG+ A+ WG FME+SA+ N + +F +++
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQ 183
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 5/165 (3%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
S +Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGN
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
KCD +R V + + A+ +G F+ETSAKT V + F L+
Sbjct: 118 KCD-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNKC
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V + + + A+ +G ++ETSAKT V++ F L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 8 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+LV+S T +S E I K E IP+++VGNK D
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA---EEDKIPLLVVGNKSD 124
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
E R+V E ++A+ WG ++ETSAKT NV ++F +L+ + + +S
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 175
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 4 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+LV+S T +S E I K E IP+++VGNK D
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA---EEDKIPLLVVGNKSD 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
E R+V E ++A+ WG ++ETSAKT NV ++F +L+ + + +S
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 171
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNKC
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V + + + A+ +G ++ETSAKT V++ F L+
Sbjct: 119 D-LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
MP QS ++ + G VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N LQ+
Sbjct: 1 MP-QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 59
Query: 61 DTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
DT G + FP + I + +ILVYS TS +S E ++ I + + G I
Sbjct: 60 DTAGQDEYSIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----I 112
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
PIMLVGNK D R +S EG+A A+ W F+E+SAK N ++F ++
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNKC
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V + + + A+ +G ++ETSAKT V++ F L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 3 EYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNKC
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V + + + A+ +G ++ETSAKT V++ F L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
MP QS ++ + G VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N LQ+
Sbjct: 1 MP-QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 59
Query: 61 DTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
DT G + FP + I + +ILVYS TS +S E ++ I + + G I
Sbjct: 60 DTAGQDEYSIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----I 112
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
PIMLVGNK D R +S EG+A A+ W F+E+SAK N ++F ++
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNK
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKS 119
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D +R V + + A+ +G F+ETSAKT V + F L+
Sbjct: 120 D-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ R+VS E + A+ W +++ETSAKT NV ++F +L+
Sbjct: 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 122
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ R+VS E + A+ W +++ETSAKT NV ++F +L+
Sbjct: 123 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 130
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ R+VS E + A+ W +++ETSAKT NV ++F +L+
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 10/164 (6%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ- 67
++ + G VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N LQ+ DT G +
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68 --FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
FP + I + +ILVYS TS +S E ++ I + + G IPIMLVGNK
Sbjct: 63 SIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIMLVGNK 115
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R +S EG+A A+ W F+E+SAK N ++F ++
Sbjct: 116 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ R+VS E + A W +++ETSAKT NV ++F +L+
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 122
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ R+VS E + A+ W +++ETSAKT NV ++F +L+
Sbjct: 123 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 8/167 (4%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
+S + ++ +FG GVGKS+LV+RF+ F Y PT+E TYR + + + +++I DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA 84
Query: 64 GSHQFPAMQRLS-ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
G Q +QR + G F+LVY T R S EE+ P+ ++ E K N + ++LV
Sbjct: 85 G--QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN----VTLILV 138
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAEL 168
GNK D +R+VS EGE A C F E SA T N+ E+F EL
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
QS ++ + G VGKSSL ++FV+G F +S PTIE+T+ ++I+ N LQ+ DT
Sbjct: 1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTA 60
Query: 64 GSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
G + FP + I + +ILVYS TS +S E ++ I + + G IPIM
Sbjct: 61 GQDEYSIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIM 113
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
LVGNK D R +S EG+A A+ W F+E+SAK N ++F ++
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ +SYI TI ++ + IS LQI
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
DT G +F + H I+VY T R S + ++ I E+ R N+L
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKL----- 118
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
LVGNKCD R V++ EG A G F+ETSAK +NV++ F
Sbjct: 119 -LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
YR+VV G GGVGKS+L ++F++ F Y PTIED+Y + + L I DT G +
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F AM+ + G F+LV+S T R S EE+ I K + P++L+GNK D
Sbjct: 66 FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK----DRDEFPMILIGNKAD 121
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
R+V+ EG+ A+ +ME SAK NV + F EL+ +
Sbjct: 122 LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRV 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + IC L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DTTG ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD +R V +
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKCD-LPSRTVDTKQA 148
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G F+ETSAKT V + F L+
Sbjct: 149 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 178
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F E Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 83 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 137
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 138 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 167
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 135
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 135
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GAGGVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNKC
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V + + + A+ +G ++ETSAKT V++ F L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S ++ E I+ K + +P++LVGNKCD R V +
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDD----VPMVLVGNKCD-LPTRTVDTKQA 148
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
AK +G F+ETSAKT V++ F L+
Sbjct: 149 HELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P S +++VV G GGVGKS+L ++F++ F Y PTIED+Y ++ S + L I D
Sbjct: 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
T G +F AM+ + GH F+LV++ RQS E+ ++ I K + P++L
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD----FPVVL 119
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
VGNK D R+V +E A + E SAK NV E F +L+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 135
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGN+CD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNRCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y P+IED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 82 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 136
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 137 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 166
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y P+IED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
K++L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + + PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNK D +R V +
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKSD-LPSRTVDTKQA 131
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G F+ETSAKT V + F L+
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNK D +R V +
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKSD-LPSRTVDTKQA 131
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G F+ETSAKT V + F L+
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIE++YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G + AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 8 YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
YRVV+ G GVGKS+L F V + EDTY + + + I L + +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
G +++ + + G A+++VYS T R S E ELR R+T+ IPI
Sbjct: 67 KGENEWLHDHXMQV--GDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
+LVGNK D REVS +EG A A ++ C F+ETSA HNVKELF
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
YRVV+ G GVGK+SL F R+ + ED Y + ++ + TL + DT + +
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 68 FPAM--QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
Q + G A+++VYS R S E + +R T ++ +PI+LVGNK
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT----HQADHVPIILVGNK 120
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D REVS EG A A ++ C F+ETSA HNV ELF
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
P S+ ++++ G GVGKS L++RFV+ F S+I TI ++ + + N LQ+
Sbjct: 2 PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 61
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DT G +F + ILVY T ++ ++ ++ + E AN+ A + +
Sbjct: 62 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH---ANDEAQL--L 116
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
LVGNK D E R V+A +GEA AK G F+E+SAK + NV E+F L L
Sbjct: 117 LVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNK D R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKSD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
++++ G GVGKS L++RFV+ F S+I TI ++ + + N LQI DT G +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F + ILVY T ++ ++ ++ + E AN+ A + +LVGNK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNE---HANDEAQL--LLVGNKSD 119
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
E R V+A +GEA AK G F+E+SAK + NV E+F L L
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
++++ G GVGKS L++RFV+ F S+I TI ++ + + N LQI DT G +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F + ILVY T ++ ++ ++ + E AN+ A + +LVGNK D
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE---HANDEAQL--LLVGNKSD 119
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
E R V+A +GEA AK G F+E+SAK + NV E+F L L
Sbjct: 120 -METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNKCD R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
++++ G GVGKS L++RFV+ F S+I TI ++ + + N LQ+ DT G +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F + ILVY T ++ ++ ++ + E AN+ A + +LVGNK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNE---HANDEAQL--LLVGNKSD 119
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
E R V+A +GEA AK G F+E+SAK + NV E+F L L
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 11/178 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G GVGK+ ++ RF + F ++I TI ++ + I + LQI DT G
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F + +LVY T+ +S + +R W IR + A+ A + M++GNKC
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-W--IRNIEEHAS--ADVEKMILGNKC 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
D + R+VS GE A +G FMETSAK N NV+ F L R+I +++KK
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA-----RDIKAKMDKK 174
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I A ++VY T+ S ++ + +R +G + + IMLVGNK
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R+VS EGE +AK F+ETSAK +NVK+LF
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
++++ G GVGKS L++RFV+ F S+I TI ++ + + N LQ+ DT G +
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F + ILVY T ++ ++ ++ + E AN+ A + +LVGNK D
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH---ANDEAQL--LLVGNKSD 136
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
E R V+A +GEA AK G F+E+SAK + NV E+F L L
Sbjct: 137 -METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I A ++VY T+ S ++ + +R +G + + IMLVGNK
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 128
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNRN------ 176
D + R+VS EGE +AK F+ETSAK +NVK+LF A L +E ++
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 177 ISLQLEK 183
I ++LEK
Sbjct: 189 IDIKLEK 195
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I ++VY T+ S ++ + +R +G + + IMLVGNK
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG-----SDVIIMLVGNKT 117
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R+++ EGE AK F+ETSAKT +NVK+LF
Sbjct: 118 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I ++VY T+ S + + +R +G + + IMLVGNK
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-----SDVIIMLVGNKT 129
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D ++ R+VS EGE +AK F+ETSAK +NVK+LF
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I ++VY T+ S ++ + +R +G + + IMLVGNK
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNRN------ 176
D + R+VS EGE +AK F+ETSAK +NVK+LF A L +E ++
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 181
Query: 177 ISLQLEK 183
I ++LEK
Sbjct: 182 IDIKLEK 188
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I ++VY T+ S ++ + +R +G + + IMLVGNK
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 116
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R+VS EGE +AK F+ETSAK +NVK+LF
Sbjct: 117 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNK D R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKXD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I ++VY T+ S ++ + +R +G + + IMLVGNK
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 131
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNRN------ 176
D + R+VS EGE +AK F+ETSAK +NVK+LF A L +E ++
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191
Query: 177 ISLQLEK 183
I ++LEK
Sbjct: 192 IDIKLEK 198
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + Y PTIED+YR+ + + C L I DT ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNK D R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKXD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G GVGK+ ++ RF + F ++I TI ++ + I + LQI DT G
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F + +LVY T+ +S + +R W IR + A+ A + M++GNKC
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-W--IRNIEEHAS--ADVEKMILGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK 183
D + R+VS GE A +G FMETSAK N NV+ F L R+I +++K
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA-----RDIKAKMDK 175
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 1 PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIP 118
DT G +F + H I+VY T ++S ++ W E+ R N+L
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL---- 115
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
LVGNKCD T + V + A G F+ETSAK NV++ F
Sbjct: 116 --LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 1 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIP 118
DT G +F + H I+VY T ++S ++ W E+ R N+L
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL---- 115
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
LVGNKCD T + V + A G F+ETSAK NV++ F +
Sbjct: 116 --LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDT 62
+S + ++V+ G G GKSSLVLRFVK F E TI + Q ++ N +I DT
Sbjct: 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDT 68
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
G ++ ++ + A I+V+ T++ S E + W + +G N + + L
Sbjct: 69 AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQGNPN----MVMALA 123
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
GNK D + R+V+A + + A+ G FMETSAKT NVKE+F E+
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 20 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
DT G +F + H I+VY T ++S ++ + E+ R N+L
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 134
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
LVGNKCD T + V + A G F+ETSAK NV++ F +
Sbjct: 135 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
Y++VV G GGVGKS+L ++F + F + Y PTIED+YR+ + L + DT G +
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEE 78
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F AM+ + G F++VYS T + S E + ++I K + S P++LV NK D
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
R+V+ +G+ A + ++ETSAK NV + F +L+ +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
DT G +F + H I+VY T ++S ++ + E+ R N+L
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 125
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
LVGNKCD T + V + A G F+ETSAK NV++ F +
Sbjct: 126 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
DT G +F + H I+VY T ++S ++ + E+ R N+L
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 142
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
LVGNKCD T + V + A G F+ETSAK NV++ F
Sbjct: 143 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 8 YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
YRVV+ G GVGKS+L F V + EDTY + + + I L + +
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
G +++ + + G A+++VYS T R S E ELR R+T+ IPI
Sbjct: 98 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 148
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
+LVGNK D REVS +EG A A ++ C F+ETSA HNVKELF
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 8 YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
YRVV+ G GVGKS+L F V + EDTY + + + I L + +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
G +++ + + G A+++VYS T R S E ELR R+T+ IPI
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
+LVGNK D REVS +EG A A ++ F+ETSA HNVKELF
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
Y++V G VGK+S++ RF TF +Y TI D + + ++ LQ+ DT G
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I A I+VY T+RQS E + I +G + I LVGNK
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-----KDVIIALVGNKT 116
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R+V+ EG +A+ + F ETSAK HN+K LF
Sbjct: 117 DLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGK+ L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 11 PEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
DT G +F + H I+VY T ++S ++ + E+ R N+L
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 125
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
LVGNKCD T + V + A G F+ETSAK NV++ F +
Sbjct: 126 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20 KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
KS+L ++ ++ F + PTIED+YR+ + + C L I DT G ++ AM+ + G
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
F+ V++ + +S E++ E I+ K + +P++LVGNK D R V + +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKSD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ A+ +G ++ETSAKT V++ F L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYR-QVISCNKNICTLQITDTTGS 65
++V++ G GVGK+ L++RF G F ++I T+ +R +V+ + LQ+ DT G
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+F ++ HA +L+Y T++ S + ++ I E + +ML+GNK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-----HDVALMLLGNK 125
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
D R V +GE AK +G FMETSAKT NV F + K R++
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 8 YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
YRVV+ G GVGKS+L F V + EDTY + + + I L + +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
G +++ + + G A+++VYS T R S E ELR R+T+ IPI
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
+LVGNK D REVS +EG A A ++ C F+ETSA HNVKELF
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQI 59
MPE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASI 117
DT G +F + H I+VY T ++S ++ W E+ R N+L
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKL--- 118
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
LVGNK D T + V + A G F+ETSAK NV++ F
Sbjct: 119 ---LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQI 59
MPE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 3 MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASI 117
DT G +F + H I+VY T ++S ++ W E+ R N+L
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKL--- 118
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
LVGNK D T + V + A G F+ETSAK NV++ F
Sbjct: 119 ---LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G GVGKSSL+LRF TF SYI TI ++ + + N LQI DT G
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F + H I+VY TS +S ++ W + E +++ I LVGNK
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-W--LHEINQNCDDVCRI---LVGNKN 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF---AELLNLEKNRNISLQ 180
D+ E + V + A G ETSAK N NV+E+F EL+ K N++ Q
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
Y++VV G GGVGKS+L ++F + F + Y PTIED+Y + + L + DT G +
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F AM+ + G F++VYS T + S E + ++I K + S P++LV NK D
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
R+V+ +G+ A + ++ETSAK NV + F +L+ +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
++V+ G VGKSS+VLRFV F E+ PTI + Q ++ N++ +I DT G +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ A ++VY T QS + R W ++E A++ I I LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARH-W--VKELHEQASK--DIIIALVGNKID 119
Query: 128 ---ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
E R+V+ EGE A+ G F ETSAKT NV ++F
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 10/170 (5%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
PE +++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIP 118
DT G +F + H I+VY T ++S ++ W E+ R N+L
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL---- 117
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
LVG KCD T + V + A G F+ETSAK NV++ F +
Sbjct: 118 --LVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
++++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI DT G +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNK 125
F + H I+VY T ++S ++ W E+ R N+L LVGNK
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL------LVGNK 113
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
CD T + V + A G F+ETSAK NV++ F +
Sbjct: 114 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
Y++VV G GGVGKS+L ++F + F Y PTIED+Y + + L + DT G +
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 73
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F AM+ + G F++VYS T + S E + ++I K + S P++LV NK D
Sbjct: 74 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 129
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
R+V+ +G+ A + ++ETSAK NV + F +L+ +
Sbjct: 130 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 174
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ ++ G GVGKS L+L+F F+ + TI + ++I+ + LQI DT G
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
F ++ R +LVY T R + L E R+ +++ IML+GNK
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN-----SNMVIMLIGNKS 125
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D REV EGEA A+ G FMETSAKT NV+E F
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQI 59
+P S ++ ++ G GVGKS L+L+F F+ + TI + ++++ + LQI
Sbjct: 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
DT G F ++ R +LVY T R++ L E R+ + +++ I
Sbjct: 75 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ-----HSSSNMVI 129
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
ML+GNK D R+V EGEA A+ G FMETSAKT NV+E F
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T++++ + W ++E + A+ SI I L GNK
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAK-TW--VKELQRQASP--SIVIALAGNKA 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E +A A FMETSAKT NV +LF
Sbjct: 124 DLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI+ + Q + + +I DT G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ + + W ++E + A+ +I I L GNK
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-W--VKELQRQASP--NIVIALAGNKA 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E +A A FMETSAKT NV E+F
Sbjct: 121 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
Y++VV G GGVGKS+L ++F + F Y PTIED+Y + + L + DT G +
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F AM+ + G F++VYS T + S E + ++I K + S P++LV NK D
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
R+V+ +G+ A + ++ETSAK NV + F +L+ +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT---TG 64
Y+V++ GA GVGKS+L R G TY + I + +L + D G
Sbjct: 8 YKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
P ++ G A+++VYS T + S E+ + +R A + +PI+LVGN
Sbjct: 67 GRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRR----ARQTDDVPIILVGN 119
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
K D +REVS EG A A ++ C F+ETSA +HNV+ LF ++ R I L+ + K
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV-----RQIRLRRDSK 174
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT---TG 64
Y+V++ GA GVGKS+L R G TY + I + +L + D G
Sbjct: 8 YKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
P ++ G A+++VYS T + S E+ + +R A + +PI+LVGN
Sbjct: 67 GRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRR----ARQTDDVPIILVGN 119
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
K D +REVS EG A A ++ C F+ETSA +HNV+ LF ++ R I L+ + K
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV-----RQIRLRRDSK 174
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 122
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT---TG 64
Y+V++ GA GVGKS+L R G TY + I + +L + D G
Sbjct: 3 YKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
P ++ G A+++VYS T + S E+ + +R A + +PI+LVGN
Sbjct: 62 GRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRR----ARQTDDVPIILVGN 114
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
K D +REVS EG A A ++ C F+ETSA +HNV+ LF
Sbjct: 115 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G VGK+S + R+ +F +++ T+ ++ + I N LQI DT G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ + FIL+Y T+ +S ++ W +T N ++LVGNKC
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNA----QVLLVGNKC 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
D + R VS+ G A G F E SAK N NVK+ F L+++
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ 67
++VV G G VGKSS++ R+ KG F + Y TI D + I N L + DT G +
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F A+ + A +LV+S T R+S E + E + E+ IP LV NK D
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV------VAEVGDIPTALVQNKID 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
++ + E E AK F TS K + NV E+F L
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQASP--NIVIALSGNKA 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ + + W ++E + A+ +I I L GNK
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-W--VKELQRQASP--NIVIALAGNKA 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E +A A FMETSAKT NV E+F
Sbjct: 119 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GVGK+ LV RF +G F TI D + + N LQI DT G
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ + +A IL Y T +S L P W +RE + A+ + +LVGNK
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCL-PEW--LREIEQYASN--KVITVLVGNKI 141
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
D E REVS E ++ +++ETSAK + NV++LF +L
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTL 57
+P S Y +VV+ G G VGK+SLVLR+ + F + +I T++ ++ + ++ L
Sbjct: 12 VPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNL 71
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G +F A+ + + ILVY T S ++++ + +R+ G NE I
Sbjct: 72 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NE---I 126
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
+ +VGNK D + R VS E E+ A+ G TSAK N ++ELF +L
Sbjct: 127 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
+V++ G+ GVGK+SL+ RF TF E+ T+ ++ + + LQI DT G +
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ ILVY T +++ ++L P W ++ A+E A ++LVGNK D
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKETFDDL-PKW--MKMIDKYASEDAE--LLLVGNKLD 142
Query: 128 ETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAELLN 170
+RE++ +GE A ++ G F E SAK N NV E+F +L++
Sbjct: 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G G VGK+SLVLR+ + F + +I T++ ++ + ++ L I DT G
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F A+ + + ILVY T S ++++ + +R+ G NE I + +VGNK
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NE---ICLCIVGNKI 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
D + R VS E E+ A+ G TSAK N ++ELF +L
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E ++ A FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G VGK+S + R+ +F +++ T+ ++ + I N LQI DT G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ + FIL Y T+ +S ++ W +T N ++LVGNKC
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNA----QVLLVGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
D + R VS+ G A G F E SAK N NVK+ F L+++
Sbjct: 124 DXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ + A I+VY T+ + + W ++E + A+ +I I L GNK
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-W--VKELQRQASP--NIVIALAGNKA 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D R V E +A A FMETSAKT NV E+F
Sbjct: 121 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G G VGK+SLVLR+ + F + +I T+ ++ + ++ L I DT G
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F A+ + + ILVY T S ++++ + +R+ G NE I + +VGNK
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NE---ICLCIVGNKI 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
D + R VS E E+ A+ G TSAK N ++ELF +L
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ V G G VGK+ +++ + TF Y+PT+ D + + + + L + DT G +
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS F+L +S S+ S E + W + E K A IPI+LVG K D
Sbjct: 68 NRLRPLSYRGADVFLLAFSLISKASYENIHKKW--LPELKHYA---PGIPIVLVGTKLDL 122
Query: 129 TENRE----------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
++++ ++ A+GE KM G ++E S+KT NVK +F
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
+++V+ G VGKSSLVLRFVKG F E TI + Q + + +I DT G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ ++ A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 122
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
D R V E ++ A F ETSAKT+ NV E+F +
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
+V + G GVGKSS+V RFV+ +F + PTI ++ + + + I DT G +
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F A+ + A I+VY T ++ L+ W +RE + SI + + GNKCD
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKN-W--VRELRQHGP--PSIVVAIAGNKCD 121
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
T+ REV + + A F+ETSAK N+ ELF E+
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
+V + G GVGKSS+V RFV+ F + PTI ++ + + C + I DT G +
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ + A ++VY T + S L+ W ++E K E +I + + GNKCD
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-W--VKELKEHGPE--NIVMAIAGNKCD 139
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
++ REV + + A+ G +ETSAK N++ELF
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ V G G VGK+ +++ + TF Y+PT+ D + + + N L + DT G +
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS FIL +S S+ S E + W I E + A +PI+LVG K D
Sbjct: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKW--IPELRHYA---PGVPIILVGTKLDL 122
Query: 129 TENRE----------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
++++ ++ +GE K+ G ++E S+KT NVK +F
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
++++ G GVGKSSL+LRF TF TI ++ + IS + N L I DT G +
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F + ILVY T R + +L W ET N++ + LVGNK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVN---XLVGNKID 132
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ ENREV EG A+ F+E SAKT V+ F EL+
Sbjct: 133 K-ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELV 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ V G G VGK+ L++ + TF Y+PT+ D + + N L + DT G +
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS FIL +S S+ S E + W I E K A +PI+LVG K D
Sbjct: 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKW--IPELKHYA---PGVPIVLVGTKLDL 124
Query: 129 TENRE----------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
++++ ++ +GE K+ G ++E S+K+ NVK +F
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G VGK+S + R+ TF +++ T+ ++ + + ++ LQI DT G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ + FIL+Y T+ +S ++ W +T N ++LVGNKC
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNA----QVILVGNKC 138
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
D E R V +G+ A+ G F E SAK N +V++ F L++
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
+V + G GVGKSS++ RFV+ +F + PTI ++ + + + I DT G +
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F A+ + A I+VY T ++ L+ W +RE + SI + + GNKCD
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKN-W--VRELRQHGP--PSIVVAIAGNKCD 122
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
T+ REV + + A F+ETSAK N+ ELF E+
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCNKNICTLQITDTTGSH 66
++V++ G GVGKS+L F ++ P EDTY + I +K TL + D
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 67 QFPAMQRLS-ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
R + G AF++V+S T R+S + + E + + G +P++LVGNK
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSK---VPETLLRLRAGRPH-HDLPVILVGNK 139
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF---AELLNLEKNRN 176
D +REVS EG A C +ETSA +HN +ELF + L + RN
Sbjct: 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
Y++V+ G VGKSS ++R K FRE+ T+ D + + + LQ+ DT G
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ + K +L+Y T +S +R ++I + A+E ++PIMLVGNK
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED---AAHE--TVPIMLVGNKA 143
Query: 127 DETENREVSAAE---------GEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
D R+ +A E GE A +G F ETSAK N+ E L K R
Sbjct: 144 D---IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT--IEDTYRQVISCNKNICTLQITDTTGS 65
+++++ G VGK+S + R+ +F +++ T I+ + V +K I LQI DT G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI-KLQIWDTAGQ 81
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ + F+L+Y +++S ++ W +T N ++LVGNK
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNA----QVILVGNK 136
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
CD + R V A +G A G F E SAK N NVK++F L+++
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE---DTYRQVISCNKNICTLQITDTTG 64
++V++ G GVGKS+L F G + + +E DTY + I +K TL + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTF--GGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 65 SHQFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
+Q + G AF++V+S T R+S + + E + + G +P++LVG
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSK---VPETLLRLRAGRPH-HDLPVILVG 116
Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
NK D +REVS EG A C +ETSA +HN +ELF
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTF------RESYIPTIEDTYRQVISCNKNICTLQITD 61
++V++ G GVGKS+L GTF + EDTY + I +K TL + D
Sbjct: 13 FKVMLLGESGVGKSTLA-----GTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD 67
Query: 62 TTGSHQFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
+Q + G AF++V+S T R+S + + E + + G +P++
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSK---VPETLLRLRAGRPH-HDLPVI 123
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
LVGNK D +REVS EG A C +ETSA +HN +ELF
Sbjct: 124 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G GVGKS L+LRF T+ YI TI ++ + + + LQI DT G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F + H I+VY T ++S ++ +W ++E A +++ +LVGNKC
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MW--LQEIDRYAT--STVLKLLVGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R V + A F+ETSA + NV++ F
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
+ + G G GKS+L ++F+ F Y P +EDTY + + L++ DT
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR 83
Query: 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVI----RETKGGANELASIPIMLVGNK 125
+R ++ HAF++VYS SRQS + E++ +ET+ SIP +L+GNK
Sbjct: 84 NCERY-LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ------RSIPALLLGNK 136
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTN-HNVKELFAE 167
D + R+V+ AEG A A +GC F E SA + +V+ +F E
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G GVGKS L+LRF T+ YI TI ++ + + + LQI DT G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F + H I+VY T ++S ++ +W ++E A +++ +LVGNKC
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MW--LQEIDRYAT--STVLKLLVGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R V + A F+ETSA + NV++ F
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
+++++ G GVGKS L+LRF T+ YI TI ++ + + + LQI DT G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F + H I+VY T ++S ++ +W ++E A +++ +LVGNKC
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MW--LQEIDRYAT--STVLKLLVGNKC 136
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D + R V + A F+ETSA + NV++ F
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 1 MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VI------ 48
+P S DY +++ G GVGK++ + R+ F +I T+ +R+ V+
Sbjct: 15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74
Query: 49 --SCNKNI-CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIR 105
S K LQ+ DT G +F ++ F+L++ TS+QS +R ++
Sbjct: 75 NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134
Query: 106 ETKGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
AN P I+L+GNK D + REV+ + A +G + ETSA T NV++
Sbjct: 135 -----ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189
Query: 165 FAELLNL 171
LL+L
Sbjct: 190 VETLLDL 196
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 122
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 123
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 123
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 123
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 124
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 125
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
Q + VV G G VGK+ L++ + F YIPT+ D Y + + L + DT
Sbjct: 10 QGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 69
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G + ++ LS + F++ +S S S E +R W E + + + PI+LVG
Sbjct: 70 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 124
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
K D ++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 125 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
Q + VV G G VGK+ L++ + F YIPT+ D Y + + L + DT
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G + ++ LS + F++ +S S S E +R W E + + + PI+LVG
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 141
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
K D ++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 22/202 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ V G G VGK+ +++ + F YIPT+ D + ++ + I L + DT G +
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS F+L +S S+ S E + W + E + A ++PI+LVG K D
Sbjct: 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKW--MPELRRFA---PNVPIVLVGTKLDL 125
Query: 129 TENRE--------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
+++ +++ +GE K G ++E S+KT NVK +F + + L
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI------KVVL 179
Query: 180 QLEKKGQLKGTRK--LKEKCSV 199
Q ++ ++ RK + CS+
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSI 201
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQ 58
P++ D+ ++V+ G VGK+ +V RF G F E TI D + + LQ
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASI 117
I DT G +F + + + IL Y T R S + P W E +R+ G ++I
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAG-----SNI 135
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETSAKTNHNVKELF 165
+L+GNK D +E REVS AE ++ A+ + C +ETSAK + NV+E F
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA-IETSAKDSSNVEEAF 184
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 71
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 72 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 126
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 127 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
Q + VV G G VGK+ L++ + F YIPT+ D Y + + L + DT
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G + ++ LS + F++ +S S S E +R W E + + + PI+LVG
Sbjct: 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 141
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
K D ++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 83
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 84 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 138
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + S PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKW--FPEVR---HHCPSTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK + ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+++V+ G GVGKS+L+ RF + F TI E + + N I QI DT G
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ A+ +LVY T + S E + W ++E + A+ ++I I+LVGNK
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEK-W--LKELRDNAD--SNIVILLVGNK 122
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
D R ++ + AK F+ETSA NV+ F +LLN
Sbjct: 123 SDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLN 167
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQI 59
M +S+ ++V++ G GGVGKSSL+ R+V F TI + + + + + T+QI
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
DT G +F +++ +L +S QS + L W+ E S P
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPF 119
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
+++GNK D +E R+VS E +A + G + + ETSAK NV F E
Sbjct: 120 VILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 68 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 122
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 39/227 (17%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-- 54
M + DY +++ G GVGK++ + R+ F +I T+ +R+ V+ +
Sbjct: 3 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 55 -------CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
LQ+ DT G +F ++ F+L++ TS+QS +R ++
Sbjct: 63 ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ-- 120
Query: 108 KGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166
AN P I+L+GNK D + REV+ + A+ +G + ETSA T NV++
Sbjct: 121 ---ANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 167 ELLNLEKNRNISLQLEK---------------KGQLKGTRKLKEKCS 198
LL+L I ++EK G+L G + ++KC+
Sbjct: 178 TLLDL-----IMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCA 219
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQI 59
M +S+ ++V++ G GGVGKSSL+ R+V F TI + + + + + T+QI
Sbjct: 3 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
DT G +F +++ +L +S QS + L W+ E S P
Sbjct: 63 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPF 121
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
+++GNK D +E R+VS E +A + G + + ETSAK NV F E
Sbjct: 122 VILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-- 54
M + DY +++ G GVGK++ + R+ F +I T+ +R+ V+ +
Sbjct: 3 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 55 -------CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
LQ+ DT G +F ++ F+L++ TS+QS +R ++
Sbjct: 63 ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ-- 120
Query: 108 KGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166
AN P I+L+GNK D + REV+ + A+ +G + ETSA T NV++
Sbjct: 121 ---ANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 167 ELLNLEKNR 175
LL+L R
Sbjct: 178 TLLDLIMKR 186
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFXPNVPIILVGNKKDL 141
Query: 126 -CDETENRE--------VSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
DE RE V + EG A ++ ++E SAKT V+E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 65
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + PI+LVG K D
Sbjct: 66 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPHTPILLVGTKLDL 120
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
++++ ++ +G A A+ G ++E SA T +K +F E +
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDT 62
+S+ +++++ G GGVGKSSL+ R+V F TI + + + + + T+QI DT
Sbjct: 8 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
G +F +++ +L +S QS + L W+ E S P +++
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVIL 126
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
GNK D E R+VS E +A K G + + ETSAK + NV F E
Sbjct: 127 GNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 65
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + PI+LVG K D
Sbjct: 66 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPHTPILLVGTKLDL 120
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
++++ ++ +G A A+ G ++E SA T +K +F E +
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 141
Query: 126 -CDETENRE--------VSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
DE RE V + EG A ++ ++E SAKT V+E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPHTPILLVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAE 167
++++ ++ +G A A+ G ++E SA T +K +F E
Sbjct: 120 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ V+ G G VGK+SLV+ + + YIPT D + V+S + LQ+ DT G +F
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ L + F+L +S S S + + W + E + PI+LVG + D
Sbjct: 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW--VPEIRC---HCPKAPIILVGTQSDL 136
Query: 129 TENREV--------------SAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
E+ +V AA+ AE ++ ++E SA T N+KE+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAE-EIKAASYIECSALTQKNLKEVF 186
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++VV G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS ++ +S S SLE + W + E K + ++PI+LV NK D
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW--VPEVK---HFCPNVPIILVANKKDL 141
Query: 128 -----------ETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
+ V +G A A ++ ++E SAKT V+E+F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
Q + VV G G VGK+ L++ + YIPT+ D Y + + L + DT
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G + ++ LS + F++ +S S S E +R W E + + + PI+LVG
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 141
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
K D ++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 122
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 119
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ +V G+ G GKS L+ +F++ F++ TI + +V++ LQI DT G
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ R +LVY TSR++ L W T N I ++L GNK
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPN----IVVILCGNKK 140
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
D REV+ E A+ F+ETSA T NV+E F
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 119
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
+V++ G GGVGKSSL+ R+V F TI + + + + TLQI DT G +
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F +++ +L +S RQS E L W+ + P +++GNK D
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 128 ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
+ E+R+V+ E + G + ++ETSAK + NV F E
Sbjct: 128 K-EDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEE 167
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S +R W E + + + PI+LVG K D
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPIILVGTKLDL 271
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S +R W E + + + PI+LVG K D
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPIILVGTKLDL 271
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ +V G G GKS L+ +F++ F++ TI + ++I+ LQI DT G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLVGN 124
+F ++ R +LVY TSR++ L W A LAS I I+L GN
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLT------DARMLASQNIVIILCGN 123
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
K D +REV+ E A+ F+ETSA T NV+E F +
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 22/172 (12%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ KG F E Y+PT+ + Y + + L + DT G +
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
++ LS + ++ +S SLE ++ W EV+ +G +PI+LVG K
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQG-------VPIILVGCKV 124
Query: 127 D------------ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
D + + V++ EG++ A G + E SAKT + V+E+F
Sbjct: 125 DLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S +R W E + + + PI+LVG K D
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPIILVGTKLDL 271
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-------- 54
DY +++ G GVGK++ + R+ F +I T+ +R+ V+ +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 55 -CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
LQ+ DT G +F ++ F+L + TS+QS +R W ++ AN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WX----SQLQANA 123
Query: 114 LASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172
P I+L+GNK D + REV+ + A+ +G + ETSA T NV++ LL+L
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 173 KNR 175
R
Sbjct: 184 XKR 186
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-------- 54
DY +++ G GVGK++ + R+ F +I T+ +R+ V+ +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 55 -CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
LQ+ DT G +F ++ F+L + TS+QS +R W ++ AN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WX----SQLQANA 123
Query: 114 LASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172
P I+L+GNK D + REV+ + A+ +G + ETSA T NV++ LL+L
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 173 KNR 175
R
Sbjct: 184 XKR 186
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 124
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V EG A G +ME SAKT V+E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G GK+ L++ F K F Y+PT+ + Y I + L + DT G +
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
+ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
DE RE V AEG A G +ME SAKT V+E+F
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 68
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + ++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 69 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 123
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 71
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + F++ +S S S E +R W E + + S PI+LVG K D
Sbjct: 72 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKW--FPEVR---HHCPSTPIILVGTKLDL 126
Query: 129 TENRE------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK + ++E SA T +K +F E +
Sbjct: 127 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + ++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 121
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + ++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
S + VV G VGK+ L++ + F YIPT+ D Y + + L + DT G
Sbjct: 7 SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 66
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
+ ++ LS + F++ +S S S E +R W E + + S PI+LVG
Sbjct: 67 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW--FPEVR---HHCPSTPIILVGT 121
Query: 125 KCDETENRE------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
K D ++++ ++ +G A AK + ++E SA T +K +F E +
Sbjct: 122 KLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + ++ +S S S E +R W E + + + PI+LVG K D
Sbjct: 65 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
++++ ++ +G A AK G ++E SA T +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTL 57
+P S DY +VV+ G GVGKS+L+ RF + F TI + + I +
Sbjct: 12 VPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 71
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
QI DT G ++ A+ +LVY + E + W ++E + A+ ++I
Sbjct: 72 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNI 126
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
IMLVGNK D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 127 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 178
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F E Y+PT+ D Y ++ L + DT G +
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS F++ +S + S + ++ W + E K A ++P +L+G + D
Sbjct: 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYA---PNVPFLLIGTQIDL 134
Query: 128 -----------ETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
+ + + + +G+ AK G C ++E SA T +K +F E +
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTT 63
N +V++ G GVGK+SL+ R+V + + Y TI + ++V + T+Q+ DT
Sbjct: 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 66
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G +F ++ +LVY T+ S E ++ W N + P +++G
Sbjct: 67 GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILG 125
Query: 124 NKCDETENREVSAAEGEAE-AKMWG-CHFMETSAKTNHNVKELFAEL 168
NK D E++++ + + E AK G TSAK NV F E+
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ +V G G GKS L+ +F++ F++ TI + ++I+ LQI DT G
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLVGN 124
+F ++ R +LVY TSR++ L W A LAS I I+L GN
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLT------DARMLASQNIVIILCGN 124
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
K D +REV+ E A+ F+ETSA T +V+E F +
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 167
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQF 68
+++ G GVGKS L+LRF T+ ESYI TI ++ + I + LQI DT G +F
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
+ H I+VY T ++S ++ W ++E A+E ++ +LVGNKCD
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-W--LQEIDRYASE--NVNKLLVGNKCDL 115
Query: 129 T 129
T
Sbjct: 116 T 116
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G G GK+ L++ K F E Y+PT+ + Y I + L + DT G +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
++ LS ++ +S S SLE + W T + ++PI+LVGNK
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
DE RE V + EG A ++ ++E SAKT V+E+F
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ +V G G GKS L+ +F++ F++ TI + ++I+ LQI DT G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLVGN 124
+F ++ R +LVY TSR++ L W A LAS I I+L GN
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLT------DARMLASQNIVIILCGN 121
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
K D +REV+ E A+ F+ETSA T +V+E F +
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 164
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P +VV+ G GG GK+SL++ F G F ESY PT+ + Y + L I D
Sbjct: 29 PPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWD 88
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
T G + ++ L +L + TS S + + W EV K +PI
Sbjct: 89 TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-------KVPI 141
Query: 120 MLVGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFA 166
++VG K D +++ V+ G+ A+ G ++E SA+ + NV +F
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
Query: 167 E 167
E
Sbjct: 202 E 202
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++VV G G VGK+ L+L F KG +Y+PT+ + + V+ L + DT G ++
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + +L ++ +R S + + WE E K + + + +LVG K D
Sbjct: 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE--PEIK---HYIDTAKTVLVGLKVDL 139
Query: 128 -ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
+ + +V+ EG+ + GC ++E S+ + E+F
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++VV G G VGK+ L+L F KG +Y+PT+ + + V+ L + DT G ++
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 83
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + +L ++ +R S + + WE E K + + + +LVG K D
Sbjct: 84 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE--PEIK---HYIDTAKTVLVGLKVDL 138
Query: 128 -ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
+ + +V+ EG+ + GC ++E S+ + E+F
Sbjct: 139 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQIT 60
P +S ++++V G VGK+ L RF G F + TI +R+ + + +Q+
Sbjct: 24 PARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 83
Query: 61 DTTGSHQF-PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG--ANELASI 117
DT G +F +M + HA + VY T+ S L P W I E K AN+ I
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSL-PAW--IEECKQHLLAND---I 137
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
P +LVGNKCD +V + A ETSAK N +V+ +F L
Sbjct: 138 PRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 12/175 (6%)
Query: 1 MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNI 54
+P S DY +VV+ G GVGK++L+ RF + F TI E + R V+ +
Sbjct: 15 VPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV 74
Query: 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL 114
QI DT G ++ A+ +LV+ T Q+ + W ++E A
Sbjct: 75 KA-QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-W--LKELYDHAE-- 128
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
A+I +MLVGNK D ++ REV E A+ G F+ETSA + NV+ F +L
Sbjct: 129 ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
E +++V+ G GG GK++ V R + G F + Y+PT+ + + V N+ + D
Sbjct: 6 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWD 65
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
T G +F ++ + I+++ TSR + + + P W +++R + +IPI
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
+L GNK D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 118 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G GVGKS+L+ RF + F TI + + I + QI DT G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ A+ +LVY + E + W ++E + A+ ++I IMLVGNK
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 144
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+PT+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ ++ G GVGKS L+ +F + F TI + ++I + LQI DT G
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F A+ R ++VY T R + L W N + I+L+GNK
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTV----IILIGNKA 130
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
D R+V+ E + A+ G F+E SAKT NV++ F E
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G GVGKS+L+ RF + F TI + + I + QI DT G
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ A+ +LVY + E + W ++E + A+ ++I IMLVGNK
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 124 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 166
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++ ++ G GVGKS L+ +F + F TI + ++I + LQI DT G
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F A+ R ++VY T R + L W N + I+L+GNK
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTV----IILIGNKA 145
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
D R+V+ E + A+ G F+E SAKT NV++ F E
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 186
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G GVGKS+L+ RF + F TI + + I + QI DT G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ A+ +LVY + E + W ++E + A+ ++I IMLVGNK
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 144
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P S + VV G G VGK+ L++ + F Y+PT+ D Y + TL + D
Sbjct: 2 PLGSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 61
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
T G + ++ LS + F++ +S S S E ++ W + E + P +L
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLL 116
Query: 122 VGNKCD------------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAEL 168
VG + D + + + ++ E A+ + ++E SA T +K +F E
Sbjct: 117 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176
Query: 169 L 169
+
Sbjct: 177 I 177
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
+V++ G GVGK+SL+ ++V F Y TI D + + + + T+QI DT G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ +LV+ T+ + + L W + + + P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
ENR+V+ +A W C+ + ETSAK NV++ F
Sbjct: 129 -LENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
+V++ G GVGK+SL+ ++V F Y TI D + + + + T+QI DT G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ +LV+ T+ + + L W + + + P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
ENR+V+ +A W C+ + ETSAK NV++ F
Sbjct: 129 -LENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
M + + ++VV+ G GVGK++L+ RF + F TI E + R V+ + Q
Sbjct: 4 MEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA-Q 62
Query: 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP 118
I DT G ++ A+ +LV+ T Q+ + W ++E A A+I
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-W--LKELYDHAE--ATIV 117
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV--------KELFAEL 168
+MLVGNK D ++ REV E A+ G F+ETSA + NV KE+FA++
Sbjct: 118 VMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
+V++ G GVGK+SL+ ++V F Y TI D + + + + T+QI DT G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ +LV+ T+ + + L W + + + P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
ENR+V+ +A W C+ + ETSAK NV++ F
Sbjct: 129 -FENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G GVGKS+L+ RF + F TI + + I + QI DT G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ + +LVY + E + W ++E + A+ ++I IMLVGNK
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E A A+ F+ETSA + NV+E F +L
Sbjct: 121 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQITDT 62
+S ++++V G VGK+ L RF G F + TI +R+ + + +Q+ DT
Sbjct: 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 63 TGSHQF-PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG--ANELASIPI 119
G +F +M + HA + VY T+ S L P W I E K AN+ IP
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAW--IEECKQHLLAND---IPR 130
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
+LVGNKCD +V + A ETSAK N +V+ +F L
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
+V++ G GVGK+SL+ ++V F Y TI D + + + + T+QI DT G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
F ++ +LV+ T+ + + L W + + + P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
ENR+V+ +A W C+ + ETSAK NV++ F
Sbjct: 129 -LENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 68 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 122
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 123 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 74
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 75 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 129
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 130 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 67 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 121
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 122 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 72 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 126
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 127 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 67 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 121
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 122 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 65
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 66 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 120
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 121 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 68 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 122
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 123 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 72 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 126
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 127 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 68
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 69 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 123
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G GVGKS+L+ RF + F TI + + I + QI DT G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ A+ +LVY + E + W ++E + A+ ++I I LVGNK
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIXLVGNKS 126
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 127 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 169
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
E +++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + D
Sbjct: 6 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 65
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
T G +F ++ + I+++ TSR + + + P W +++R + +IPI
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
+L GNK D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 118 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
++VV+ G GVGKS+L+ RF + F TI + + I + QI DT G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ A+ +LVY + E + W ++E + A+ ++I I LVGNK
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIXLVGNKS 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ---VISCNK--- 52
M + DY + + G GVGK+S++ ++ G F +I T+ +R+ V N
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 53 -----NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
LQ+ DT G +F ++ F+L++ T+ QS +R ++
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 108 KGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
N I+L GNK D + R V E A+ +G + ETSA N+
Sbjct: 123 AYSENP----DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 168 LLNL 171
LL+L
Sbjct: 179 LLDL 182
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 37/193 (19%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 69 PAMQRLSISK-------------------GHAFILVYSCTSRQSLEELRPIWEVIRETKG 109
++ LS + F++ +S S S E +R W E +
Sbjct: 67 DRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW--YPEVR- 123
Query: 110 GANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAK 156
+ + PI+LVG K D ++++ ++ +G A AK G ++E SA
Sbjct: 124 --HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 157 TNHNVKELFAELL 169
T +K +F E +
Sbjct: 182 TQRGLKTVFDEAI 194
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
E +++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + D
Sbjct: 2 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 61
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
T G +F ++ + I+++ TSR + + + P W +++R + +IPI
Sbjct: 62 TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 113
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
+L GNK D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 114 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 160
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 115
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 116 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 157
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 127
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 128 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 169
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
E +++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + D
Sbjct: 8 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 67
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
T G +F ++ + I+++ TSR + + + P W +++R + +IPI
Sbjct: 68 TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 119
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
+L GNK D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 120 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 166
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+P + D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+ + TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + Y+ T+ + + V N+ + DT G
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
++ ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+++V+ G GVGKS+L+ RF K F TI E R + K I QI DT G
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KAQIWDTAGQ 72
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ A+ ++VY + S E +RE N ++ + L+GNK
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE-----NADDNVAVGLIGNK 127
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
D R V E + A+ F ETSA + NV + F EL+N
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN 172
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
++ LS + F++ +S S S E ++ W + E + P +LVG + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
+ + + ++ E A+ + ++E SA T +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G + Y+ T+ + + V N+ + DT G
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ + I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 127
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D ++R+V A K + + SAK+N+N ++ F L
Sbjct: 128 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 169
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + YI TI + + N + DT G
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE-------NIPIVLCGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D E R+V A K + + SAK+N+N ++ F L
Sbjct: 118 KVDVKE-RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWL 159
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + YI TI + + N + DT G
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE-------NIPIVLCGN 116
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D E R+V A K + + SAK+N+N ++ F L
Sbjct: 117 KVDVKE-RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWL 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 46/204 (22%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY------------------ 44
E+ + Y+ V+ G VGKSS+VLR K TF E+ TI ++
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 45 ------------------RQVISCNKNICTLQ--ITDTTGSHQFPAMQRLSISKGHAFIL 84
Q + N+N+C ++ I DT G ++ ++ L I+
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK 144
V+ ++ +L+ + W + + K +N + I+LV NK D+ + +V E + A+
Sbjct: 123 VFDISNSNTLDRAKT-W--VNQLKISSNYI----IILVANKIDKNK-FQVDILEVQKYAQ 174
Query: 145 MWGCHFMETSAKTNHNVKELFAEL 168
F++TSAKT N+K +F L
Sbjct: 175 DNNLLFIQTSAKTGTNIKNIFYML 198
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNI-CTLQITDTTGSH 66
++VV G G GK+SL F + TF + Y TI D + + I+ N+ TLQI D G
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNK 125
M I +LVY T+ QS E L + V+++ + E + P++ LVGNK
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV---SEESETQPLVALVGNK 124
Query: 126 CDETENREVSAAEGE--AEAKMWGCHFMETSAKTNHNV----KELFAELLNLEKNR 175
D R + + + + HF+ SAKT +V +++ AE+L ++ N+
Sbjct: 125 IDLEHMRTIKPEKHLRFCQENGFSSHFV--SAKTGDSVFLCFQKVAAEILGIKLNK 178
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
+++V+ G GG GK++ V R + G F + YI TI + + N + DT G
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
+F ++ I+++ TSR + + + P W +++R + +IPI+L GN
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE-------NIPIVLCGN 124
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
K D E R+V A K + + SAK+N+N ++ F L
Sbjct: 125 KVDVKE-RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWL 166
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P Q+ ++VV G GK++L+ F K F E+Y+PT+ + Y + L + D
Sbjct: 18 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 77
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL-ASIPIM 120
T+GS + ++ LS A ++ + + ++L+ V+++ KG E + ++
Sbjct: 78 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKML 131
Query: 121 LVGNKCD---------ETENRE---VSAAEGEAEAKMWGCH-FMETSA-KTNHNVKELF 165
LVG K D E N VS +G AK G ++E SA ++ ++V+++F
Sbjct: 132 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P Q+ ++VV G GK++L+ F K F E+Y+PT+ + Y + L + D
Sbjct: 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 82
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL-ASIPIM 120
T+GS + ++ LS A ++ + + ++L+ V+++ KG E + ++
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKML 136
Query: 121 LVGNKCD---------ETENR---EVSAAEGEAEAKMWGCH-FMETSA-KTNHNVKELF 165
LVG K D E N VS +G AK G ++E SA ++ ++V+++F
Sbjct: 137 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+++V+ G GVGKS+L+ RF F TI E R + NK I QI DT G
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKA-QIWDTAGL 69
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ A+ ++VY + S E +RE N ++ + L+GNK
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE-----NADDNVAVGLIGNK 124
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V E + A F ETSA + NV + F EL+
Sbjct: 125 SDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELI 168
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++VV G GK++L+ F K F E+Y+PT+ + Y + L + DT+GS +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA-SIPIMLVGNKCD 127
++ LS A ++ + + ++L+ V+++ KG E + ++LVG K D
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKMLLVGCKSD 122
Query: 128 ---------ETENRE---VSAAEGEAEAKMWGCH-FMETSA-KTNHNVKELF 165
E N VS +G AK G ++E SA ++ ++V+++F
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNK--NICTLQITDTTGS 65
Y++ + G GGVGK++ + R + G F ++Y T+ V + N+ + DT G
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+ ++ + IL + TSR + + L W ++E + A PI++ NK
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-W--VKEFQAVVGNEA--PIVVCANK 126
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D +++S K + E SAKT HN F L + R
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G GK++++ K + E+Y+PT+ + Y + + L + DT+GS +
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
++ L S A +L + + ++++ W E++ + S ++L+G K
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-------DYCPSTRVLLIGCKT 141
Query: 127 D------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
D + +S +G A AK G ++E SA T+ ++ +F A +L
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201
Query: 171 LEK 173
L K
Sbjct: 202 LNK 204
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G GK++++ K + E+Y+PT+ + Y + + L + DT+GS +
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
++ L S A +L + + ++++ W E++ + S ++L+G K
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-------DYCPSTRVLLIGCKT 124
Query: 127 D------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
D + +S +G A AK G ++E SA T+ ++ +F A +L
Sbjct: 125 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 184
Query: 171 LEK 173
L K
Sbjct: 185 LNK 187
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V+ G GK++++ K + E+Y+PT+ + Y + + L + DT+GS +
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
++ L S A +L + + ++++ W E++ + S ++L+G K
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-------DYCPSTRVLLIGCKT 125
Query: 127 D------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
D + +S +G A AK G ++E SA T+ ++ +F A +L
Sbjct: 126 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 185
Query: 171 LEK 173
L K
Sbjct: 186 LNK 188
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 19 GKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK 78
GK++ V G F E IPT+ R+V N T++I D G +F +M
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN---VTIKIWDIGGQPRFRSMWERYCRG 90
Query: 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+A + + R+ +E R + + +L IP++++GNK D
Sbjct: 91 VNAIVYMIDAADREKIEASRNELHNLLDKP----QLQGIPVLVLGNKRD 135
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 19 GKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK 78
GK++ V G F E IPT+ R++ N T+++ D G +F +M
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN---VTIKLWDIGGQPRFRSMWERYCRG 90
Query: 79 GHAFILVYSCTSRQSLE----ELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
A + + ++ +E EL + + +L IP++++GNK D
Sbjct: 91 VSAIVYMVDAADQEKIEASKNELHNLLD--------KPQLQGIPVLVLGNKRD 135
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 19 GKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK 78
GK++ V G F E IPT+ R++ N T+++ D G +F +M
Sbjct: 43 GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN---VTIKLWDIGGQPRFRSMWERYCRG 99
Query: 79 GHAFILVYSCTSRQSLE----ELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
A + + ++ +E EL + + +L IP++++GNK D
Sbjct: 100 VSAIVYMVDAADQEKIEASKNELHNLLD--------KPQLQGIPVLVLGNKRD 144
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V G GK++L L +K ++PT+ T ++ T D G Q
Sbjct: 18 KLVFLGLDNAGKTTL-LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF---DLGGGIQA 73
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSL----EELRPIWEVIRETKGGANELASIPIMLVGN 124
+ + + + + + C + L EEL + + ET +A++PI+++GN
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL--MTDET------IANVPILILGN 125
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
K D E A E +M+G + +T+ K + ++KEL A L
Sbjct: 126 KIDRPE-----AISEERLREMFGL-YGQTTGKGSVSLKELNARPL 164
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V G GK++L L +K ++PT+ T ++ T D G Q
Sbjct: 37 KLVFLGLDNAGKTTL-LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF---DLGGHEQA 92
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
+ + + + + + C L E + + + ++++PI+++GNK D
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDE----TISNVPILILGNKIDR 148
Query: 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166
T+ A E +++G + +T+ K N +KEL A
Sbjct: 149 TD-----AISEEKLREIFGL-YGQTTGKGNVTLKELNA 180
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V G GK++L L +K ++PT+ T ++ T D G Q
Sbjct: 24 KLVFLGLDNAGKTTL-LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF---DLGGHIQA 79
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSL----EELRPIWEVIRETKGGANELASIPIMLVGN 124
+ + + + + + C + L EEL + + ET +A++PI+++GN
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL--MTDET------IANVPILILGN 131
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
K D E A E +M+G + +T+ K + ++KEL A L
Sbjct: 132 KIDRPE-----AISEERLREMFGL-YGQTTGKGSVSLKELNARPL 170
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS--H 66
R+ V G GKSSL+ RF+ G++ + T + Y++ + + + I + G+
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG--N 124
+F A I V+S S + + + + +G + + LVG +
Sbjct: 68 KFSGW-------ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR--GGLALALVGTQD 118
Query: 125 KCDETENREVSAAEGEA-EAKMWGCHFMETSAKTNHNVKELFAEL 168
+ + R V A A A M C + ET A NV +F E+
Sbjct: 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEV 163
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
++V G GK++L L +K ++PT+ T ++ T D G Q
Sbjct: 27 KLVFLGLDNAGKTTL-LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF---DLGGHIQA 82
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSL----EELRPIWEVIRETKGGANELASIPIMLVGN 124
+ + + + + + C + L EEL + + ET +A++PI+++GN
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL--MTDET------IANVPILILGN 134
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
K D E A E +M+G + +T+ K + ++KEL A L
Sbjct: 135 KIDRPE-----AISEERLREMFGL-YGQTTGKGSVSLKELNARPL 173
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 112 NELASI--PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
N+LA PI++V KCDE R + A A +K +ETSA++N NV F+ L+
Sbjct: 192 NQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLV 250
Query: 170 NL 171
L
Sbjct: 251 QL 252
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS- 65
+ R+ V G GKSSL+ RF+ G++ + T + Y++ + + + I + G+
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 66 -HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG- 123
+F A I V+S S + + + + +G + + LVG
Sbjct: 66 DAKFSGW-------ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR--GGLALALVGT 116
Query: 124 -NKCDETENREVSAAEGEAE-AKMWGCHFMETSAKTNHNVKELFAEL 168
++ + R V A A A M C + ET A NV +F E+
Sbjct: 117 QDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 163
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 5 SNDYRVVVFGAGGVGKSSL-VLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
S+ + V F G SSL VL+ +F+E+++P I R + + + C L+ T
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 64 GSHQFPAMQRLSISKGHAFIL 84
+ ++Q L++S + F L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSL 214
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 5 SNDYRVVVFGAGGVGKSSL-VLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
S+ + V F G SSL VL+ +F+E+++P I R + + + C L+ T
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 64 GSHQFPAMQRLSISKGHAFIL 84
+ ++Q L++S + F L
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSL 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 0.43, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 5 SNDYRVVVFGAGGVGKSSL-VLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
S+ + V F G SSL VL+ +F+E+++P I R + + + C L+ T
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 64 GSHQFPAMQRLSISKGHAFIL 84
+ ++Q L++S + F L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSL 509
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQITD 61
E N ++V G GGVGKSS V + G S P + R V +S ++ TL I D
Sbjct: 35 EDVNSLTILVMGKGGVGKSSTVNSII-GERVVSISPFQSEGPRPVMVSRSRAGFTLNIID 93
Query: 62 TTGSHQFPAMQRLSISKGHAFIL 84
T G + + ++++ +F+L
Sbjct: 94 TPGLIEGGYINDMALNIIKSFLL 116
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 114 LASIPIMLVGNKCDETENREVSAAE-----GEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
+ +PI+LVGNK D + E + EAE +M SA V EL A+L
Sbjct: 115 VGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRM-------LSALDERQVAELKADL 167
Query: 169 LNL 171
L L
Sbjct: 168 LAL 170
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 5 SNDYRVVVFGAGGVGKSSL-VLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
S+ + V F G SSL VL+ +F+E+++P I R + + + C L+ T
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 64 GSHQFPAMQRLSIS 77
+ ++Q L+++
Sbjct: 489 AFNSLSSLQVLNMA 502
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQITD 61
E N ++V G GGVGKSS V + G S P + R V +S ++ TL I D
Sbjct: 35 EDVNSLTILVXGKGGVGKSSTVNSII-GERVVSISPFQSEGPRPVXVSRSRAGFTLNIID 93
Query: 62 TTG 64
T G
Sbjct: 94 TPG 96
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNI--CTLQITD 61
S+ +VV+ G GKSSL L + G RE+ I T I T R V+ + +I L I D
Sbjct: 2 SHGMKVVIAGRPNAGKSSL-LNALAG--REAAIVTDIAGTTRDVLREHIHIDGMPLHIID 58
Query: 62 TTGSHQFPA-MQRLSISK-------GHAFILVYSCTSRQSLEELRPIW-EVIRETKGGAN 112
T G + ++R+ I + + + T+ +++ IW E I A
Sbjct: 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE-IWPEFI------AR 111
Query: 113 ELASIPIMLVGNKCDET-ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
A +PI +V NK D T E +S G A + SA+T V L
Sbjct: 112 LPAKLPITVVRNKADITGETLGMSEVNGHA--------LIRLSARTGEGVDVL 156
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 27/129 (20%)
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASI 117
DT G F AM+ ILV + +Q++E ++ + A +
Sbjct: 58 DTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKD------------AHV 105
Query: 118 PIMLVGNKCDETE------NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL------F 165
PI+L NKCD+ E +E+ A + E + SA T N+ L
Sbjct: 106 PIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIAL 165
Query: 166 AELLNLEKN 174
AE+L L+ +
Sbjct: 166 AEMLELKAD 174
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTL 57
V+V G G GK++ + ++ +E I +IEDT V +KN L
Sbjct: 174 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQL 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,469,573
Number of Sequences: 62578
Number of extensions: 201054
Number of successful extensions: 1317
Number of sequences better than 100.0: 312
Number of HSP's better than 100.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 314
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)