Query psy8700
Match_columns 200
No_of_seqs 108 out of 1779
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 17:02:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04144 Ras2 Ras2 subfamily. 100.0 1.1E-38 2.3E-43 226.7 20.4 190 9-200 1-190 (190)
2 KOG0084|consensus 100.0 2E-38 4.4E-43 215.4 17.4 172 3-179 5-178 (205)
3 KOG0092|consensus 100.0 7.9E-38 1.7E-42 211.7 17.4 171 5-180 3-174 (200)
4 KOG0094|consensus 100.0 2.5E-37 5.5E-42 209.4 16.2 168 6-177 21-189 (221)
5 cd01875 RhoG RhoG subfamily. 100.0 6.2E-36 1.3E-40 212.5 21.6 161 7-173 3-177 (191)
6 KOG0078|consensus 100.0 4.1E-36 9E-41 206.9 19.8 174 4-182 9-183 (207)
7 KOG0394|consensus 100.0 2.4E-36 5.2E-41 202.7 17.3 173 4-177 6-182 (210)
8 PTZ00369 Ras-like protein; Pro 100.0 1.3E-35 2.9E-40 210.6 21.7 166 5-174 3-168 (189)
9 cd04121 Rab40 Rab40 subfamily. 100.0 7.6E-36 1.7E-40 210.9 20.2 167 5-177 4-171 (189)
10 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-35 5E-40 213.6 21.6 164 6-175 12-190 (232)
11 cd04120 Rab12 Rab12 subfamily. 100.0 3.2E-35 6.9E-40 209.6 21.0 162 8-174 1-164 (202)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.2E-35 9.2E-40 206.1 20.6 163 4-172 2-179 (182)
13 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.8E-35 1E-39 204.7 20.7 164 7-174 2-165 (172)
14 cd04132 Rho4_like Rho4-like su 100.0 6.2E-35 1.3E-39 207.0 21.2 180 8-200 1-187 (187)
15 cd04133 Rop_like Rop subfamily 100.0 8.4E-35 1.8E-39 203.4 20.2 159 8-172 2-172 (176)
16 cd04125 RabA_like RabA-like su 100.0 9.9E-35 2.1E-39 206.1 20.8 186 8-199 1-187 (188)
17 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-34 3E-39 206.9 21.3 167 5-177 4-171 (199)
18 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3E-34 6.5E-39 205.6 22.9 173 8-181 1-176 (201)
19 cd04136 Rap_like Rap-like subf 100.0 1.6E-34 3.4E-39 200.5 20.8 162 7-172 1-162 (163)
20 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.8E-34 4E-39 207.9 21.6 165 8-177 2-180 (222)
21 cd04126 Rab20 Rab20 subfamily. 100.0 2.1E-34 4.5E-39 207.5 21.8 182 8-198 1-220 (220)
22 cd04109 Rab28 Rab28 subfamily. 100.0 2.1E-34 4.6E-39 208.3 21.3 166 8-175 1-168 (215)
23 cd04112 Rab26 Rab26 subfamily. 100.0 1.7E-34 3.6E-39 205.3 20.4 171 8-183 1-173 (191)
24 cd04175 Rap1 Rap1 subgroup. T 100.0 3.1E-34 6.7E-39 199.3 20.9 162 7-172 1-162 (164)
25 cd04134 Rho3 Rho3 subfamily. 100.0 2.5E-34 5.4E-39 204.1 20.7 174 9-200 2-189 (189)
26 cd04131 Rnd Rnd subfamily. Th 100.0 1.9E-34 4.2E-39 202.4 19.8 160 7-172 1-175 (178)
27 cd04122 Rab14 Rab14 subfamily. 100.0 5.7E-34 1.2E-38 198.4 20.5 162 7-173 2-164 (166)
28 KOG0079|consensus 100.0 2.2E-35 4.7E-40 191.3 12.2 165 5-175 6-171 (198)
29 smart00173 RAS Ras subfamily o 100.0 1.4E-33 3.1E-38 196.0 21.1 162 8-173 1-162 (164)
30 KOG0080|consensus 100.0 1.5E-34 3.3E-39 189.9 15.1 169 5-177 9-178 (209)
31 cd04140 ARHI_like ARHI subfami 100.0 1.8E-33 3.9E-38 195.7 21.4 162 8-171 2-163 (165)
32 KOG0098|consensus 100.0 3.2E-34 7E-39 192.9 16.3 171 4-179 3-174 (216)
33 cd04176 Rap2 Rap2 subgroup. T 100.0 1.8E-33 3.9E-38 195.3 20.5 162 7-172 1-162 (163)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 2.2E-33 4.8E-38 195.6 20.9 164 6-174 2-166 (167)
35 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.6E-33 3.6E-38 197.4 20.2 159 8-172 2-174 (175)
36 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.4E-33 7.3E-38 193.5 21.3 161 7-172 1-161 (162)
37 PLN03110 Rab GTPase; Provision 100.0 2.3E-33 4.9E-38 202.8 21.2 165 5-174 10-175 (216)
38 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.9E-33 1.1E-37 193.2 21.4 162 7-172 2-163 (164)
39 cd01865 Rab3 Rab3 subfamily. 100.0 3.6E-33 7.9E-38 194.1 20.6 161 8-173 2-163 (165)
40 cd04117 Rab15 Rab15 subfamily. 100.0 3.2E-33 6.9E-38 193.6 20.0 159 8-171 1-160 (161)
41 cd04127 Rab27A Rab27a subfamil 100.0 3.5E-33 7.5E-38 196.9 20.1 165 6-174 3-178 (180)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.5E-33 1.4E-37 193.0 20.7 162 7-173 2-164 (166)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 6.3E-33 1.4E-37 193.2 20.5 166 8-173 1-167 (168)
44 cd01871 Rac1_like Rac1-like su 100.0 1.3E-32 2.9E-37 192.7 20.0 158 8-171 2-173 (174)
45 cd04142 RRP22 RRP22 subfamily. 100.0 1.3E-32 2.8E-37 196.1 19.8 188 8-200 1-198 (198)
46 PF00071 Ras: Ras family; Int 100.0 1.8E-32 3.9E-37 190.0 19.6 160 9-173 1-161 (162)
47 cd04118 Rab24 Rab24 subfamily. 100.0 3.2E-32 6.9E-37 194.0 21.2 163 8-176 1-169 (193)
48 KOG0087|consensus 100.0 6.6E-33 1.4E-37 190.4 16.3 170 5-179 12-182 (222)
49 PLN03071 GTP-binding nuclear p 100.0 2.6E-32 5.7E-37 197.5 20.1 164 4-175 10-174 (219)
50 cd04177 RSR1 RSR1 subgroup. R 100.0 5.3E-32 1.2E-36 188.8 21.1 162 7-172 1-163 (168)
51 cd01868 Rab11_like Rab11-like. 100.0 3.8E-32 8.2E-37 189.0 20.2 161 7-172 3-164 (165)
52 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4E-32 8.8E-37 189.6 20.1 162 9-174 2-166 (170)
53 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.1E-32 8.8E-37 191.3 20.2 163 8-176 1-169 (182)
54 cd04106 Rab23_lke Rab23-like s 100.0 2.8E-32 6.2E-37 189.0 19.1 158 8-171 1-161 (162)
55 cd04111 Rab39 Rab39 subfamily. 100.0 4.6E-32 9.9E-37 195.3 20.7 166 7-176 2-169 (211)
56 cd04113 Rab4 Rab4 subfamily. 100.0 4.4E-32 9.6E-37 187.9 19.4 159 8-171 1-160 (161)
57 cd00877 Ran Ran (Ras-related n 100.0 5.9E-32 1.3E-36 188.1 19.8 159 8-174 1-160 (166)
58 cd01866 Rab2 Rab2 subfamily. 100.0 9.3E-32 2E-36 187.6 20.7 163 7-174 4-167 (168)
59 KOG0093|consensus 100.0 1.1E-32 2.3E-37 178.6 14.5 162 7-173 21-183 (193)
60 cd04124 RabL2 RabL2 subfamily. 100.0 1E-31 2.2E-36 186.1 20.2 159 8-175 1-160 (161)
61 cd01864 Rab19 Rab19 subfamily. 100.0 7.9E-32 1.7E-36 187.4 19.6 161 6-171 2-164 (165)
62 smart00174 RHO Rho (Ras homolo 100.0 6.9E-32 1.5E-36 189.2 19.3 158 10-173 1-172 (174)
63 cd04139 RalA_RalB RalA/RalB su 100.0 2.6E-31 5.5E-36 184.5 21.2 162 8-173 1-162 (164)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.6E-31 3.5E-36 186.7 20.1 162 7-172 2-168 (170)
65 KOG0088|consensus 100.0 4.9E-33 1.1E-37 182.5 11.4 168 4-176 10-178 (218)
66 cd04116 Rab9 Rab9 subfamily. 100.0 2.1E-31 4.6E-36 186.1 19.9 166 4-171 2-169 (170)
67 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-31 3.5E-36 185.9 19.2 162 9-173 1-164 (165)
68 PLN03108 Rab family protein; P 100.0 3.3E-31 7.2E-36 190.8 21.4 165 6-175 5-170 (210)
69 cd04143 Rhes_like Rhes_like su 100.0 2.3E-31 5E-36 195.2 21.0 165 8-172 1-170 (247)
70 smart00175 RAB Rab subfamily o 100.0 2.3E-31 5.1E-36 184.7 19.9 162 8-174 1-163 (164)
71 cd01861 Rab6 Rab6 subfamily. 100.0 2.4E-31 5.2E-36 184.2 19.8 159 8-171 1-160 (161)
72 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.3E-31 5E-36 186.4 19.5 157 8-170 1-171 (173)
73 PLN03118 Rab family protein; P 100.0 7.9E-31 1.7E-35 189.2 22.7 168 5-176 12-180 (211)
74 cd04137 RheB Rheb (Ras Homolog 100.0 5.1E-31 1.1E-35 185.8 21.2 179 8-200 2-180 (180)
75 KOG0095|consensus 100.0 2.7E-32 5.8E-37 177.4 13.0 163 6-173 6-169 (213)
76 cd04103 Centaurin_gamma Centau 100.0 4.4E-31 9.6E-36 182.1 19.7 154 8-171 1-157 (158)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 4.7E-31 1E-35 187.4 19.8 157 7-171 2-194 (195)
78 KOG0086|consensus 100.0 5.8E-32 1.3E-36 176.5 13.7 174 6-184 8-182 (214)
79 cd04148 RGK RGK subfamily. Th 100.0 7.9E-31 1.7E-35 190.1 21.1 163 8-176 1-166 (221)
80 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.4E-31 1.2E-35 183.0 19.4 159 8-172 1-163 (164)
81 KOG0395|consensus 100.0 4.2E-31 9E-36 186.8 18.5 165 6-174 2-166 (196)
82 cd04135 Tc10 TC10 subfamily. 100.0 8.9E-31 1.9E-35 183.6 20.1 159 8-172 1-173 (174)
83 cd01860 Rab5_related Rab5-rela 100.0 1.1E-30 2.3E-35 181.3 20.2 161 7-172 1-162 (163)
84 cd04123 Rab21 Rab21 subfamily. 100.0 1.4E-30 3.1E-35 180.3 20.1 160 8-172 1-161 (162)
85 cd01892 Miro2 Miro2 subfamily. 100.0 8.3E-31 1.8E-35 182.8 17.9 162 5-173 2-166 (169)
86 cd01862 Rab7 Rab7 subfamily. 100.0 3.3E-30 7.1E-35 180.3 20.1 167 8-175 1-169 (172)
87 smart00176 RAN Ran (Ras-relate 100.0 1.5E-30 3.2E-35 185.3 18.5 155 13-175 1-156 (200)
88 KOG0091|consensus 100.0 3.2E-31 6.9E-36 174.8 13.4 167 7-176 8-176 (213)
89 cd04114 Rab30 Rab30 subfamily. 100.0 6.9E-30 1.5E-34 178.2 21.1 167 1-172 1-168 (169)
90 cd01863 Rab18 Rab18 subfamily. 100.0 5.5E-30 1.2E-34 177.4 20.4 159 8-171 1-160 (161)
91 cd00876 Ras Ras family. The R 100.0 3.7E-30 8E-35 177.9 19.3 159 9-171 1-159 (160)
92 cd04147 Ras_dva Ras-dva subfam 100.0 8.7E-30 1.9E-34 182.0 20.8 162 9-174 1-164 (198)
93 cd04129 Rho2 Rho2 subfamily. 100.0 1E-29 2.2E-34 180.2 20.6 174 8-199 2-187 (187)
94 cd01870 RhoA_like RhoA-like su 100.0 1.5E-29 3.3E-34 177.5 20.2 159 8-172 2-174 (175)
95 cd00157 Rho Rho (Ras homology) 100.0 1.7E-29 3.7E-34 176.5 19.3 158 8-170 1-170 (171)
96 cd00154 Rab Rab family. Rab G 100.0 2.7E-29 5.8E-34 173.0 18.8 157 8-169 1-158 (159)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2E-29 4.4E-34 178.0 17.5 165 6-177 2-174 (183)
98 smart00177 ARF ARF-like small 100.0 8.2E-30 1.8E-34 178.8 15.1 158 5-172 11-173 (175)
99 PLN00223 ADP-ribosylation fact 100.0 2.5E-29 5.5E-34 177.0 17.2 157 5-174 15-179 (181)
100 cd04149 Arf6 Arf6 subfamily. 100.0 8.7E-30 1.9E-34 177.5 14.2 156 5-170 7-167 (168)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.4E-30 1.2E-34 177.9 12.9 153 9-170 1-163 (164)
102 KOG0081|consensus 100.0 7.2E-31 1.6E-35 172.4 7.4 164 8-175 10-183 (219)
103 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.2E-29 2.7E-34 175.2 13.8 153 8-170 1-158 (159)
104 cd04158 ARD1 ARD1 subfamily. 100.0 4.5E-29 9.7E-34 174.2 16.7 158 9-176 1-164 (169)
105 PTZ00133 ADP-ribosylation fact 100.0 1.2E-29 2.5E-34 178.9 13.8 160 5-174 15-179 (182)
106 cd01893 Miro1 Miro1 subfamily. 100.0 4.6E-28 1E-32 168.6 19.9 159 8-173 1-164 (166)
107 cd04154 Arl2 Arl2 subfamily. 100.0 1.8E-28 3.8E-33 171.8 17.2 158 3-170 10-172 (173)
108 KOG0393|consensus 100.0 8.2E-29 1.8E-33 171.6 13.3 167 6-177 3-183 (198)
109 PTZ00132 GTP-binding nuclear p 100.0 1.6E-27 3.5E-32 172.4 20.6 173 2-182 4-177 (215)
110 KOG0097|consensus 100.0 3.2E-28 6.9E-33 157.2 13.8 171 7-182 11-182 (215)
111 KOG0083|consensus 100.0 7.7E-30 1.7E-34 163.0 6.1 161 11-176 1-163 (192)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.3E-28 9.3E-33 170.0 13.6 155 6-170 14-173 (174)
113 cd04157 Arl6 Arl6 subfamily. 100.0 9.2E-28 2E-32 166.3 13.8 155 9-170 1-161 (162)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.6E-26 3.5E-31 164.5 20.2 152 8-159 1-176 (202)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.5E-27 3.3E-32 165.0 14.4 153 9-170 1-159 (160)
116 cd04151 Arl1 Arl1 subfamily. 100.0 1.4E-27 3.1E-32 164.8 14.2 152 9-170 1-157 (158)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 1E-27 2.3E-32 166.9 13.3 154 9-170 1-166 (167)
118 cd00879 Sar1 Sar1 subfamily. 100.0 6.9E-27 1.5E-31 166.1 16.8 158 4-171 16-189 (190)
119 cd00878 Arf_Arl Arf (ADP-ribos 100.0 6.9E-27 1.5E-31 161.4 14.6 152 9-170 1-157 (158)
120 smart00178 SAR Sar1p-like memb 99.9 9.9E-27 2.1E-31 164.4 15.0 159 3-171 13-183 (184)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.2E-26 2.7E-31 161.5 14.9 153 9-170 1-166 (167)
122 PF00025 Arf: ADP-ribosylation 99.9 2.1E-26 4.6E-31 161.2 15.3 159 4-172 11-175 (175)
123 KOG4252|consensus 99.9 6.7E-28 1.5E-32 161.5 6.3 167 6-178 19-186 (246)
124 cd04159 Arl10_like Arl10-like 99.9 6.3E-26 1.4E-30 156.2 15.3 153 9-170 1-158 (159)
125 cd01898 Obg Obg subfamily. Th 99.9 1.9E-25 4.1E-30 155.9 15.1 158 9-171 2-169 (170)
126 PLN00023 GTP-binding protein; 99.9 9E-25 1.9E-29 162.9 19.2 145 4-148 18-189 (334)
127 PTZ00099 rab6; Provisional 99.9 8.8E-25 1.9E-29 152.9 17.1 142 30-176 3-145 (176)
128 cd01890 LepA LepA subfamily. 99.9 8.2E-25 1.8E-29 154.0 16.6 153 9-172 2-176 (179)
129 PRK12299 obgE GTPase CgtA; Rev 99.9 7.7E-25 1.7E-29 166.6 17.6 163 8-174 159-329 (335)
130 cd01897 NOG NOG1 is a nucleola 99.9 1.3E-24 2.9E-29 151.4 17.0 154 9-172 2-167 (168)
131 cd04155 Arl3 Arl3 subfamily. 99.9 4.5E-24 9.7E-29 149.4 18.0 155 3-170 10-172 (173)
132 KOG0073|consensus 99.9 2.9E-24 6.2E-29 142.0 15.7 164 4-175 13-180 (185)
133 KOG0070|consensus 99.9 3.6E-25 7.8E-30 149.8 11.6 164 4-175 14-180 (181)
134 cd01878 HflX HflX subfamily. 99.9 1E-24 2.2E-29 156.6 14.2 156 4-171 38-203 (204)
135 TIGR00231 small_GTP small GTP- 99.9 8.9E-24 1.9E-28 145.2 17.9 157 7-169 1-160 (161)
136 cd00882 Ras_like_GTPase Ras-li 99.9 1.7E-23 3.8E-28 142.7 16.7 154 12-169 1-156 (157)
137 TIGR00436 era GTP-binding prot 99.9 6.8E-24 1.5E-28 158.2 15.5 156 9-177 2-168 (270)
138 cd04171 SelB SelB subfamily. 99.9 8.2E-24 1.8E-28 146.7 14.2 153 9-170 2-163 (164)
139 COG1100 GTPase SAR1 and relate 99.9 4.3E-23 9.4E-28 149.7 18.2 169 7-180 5-192 (219)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-23 4E-28 145.6 15.0 156 9-173 2-166 (168)
141 TIGR02528 EutP ethanolamine ut 99.9 3.6E-24 7.8E-29 145.3 11.0 134 9-169 2-141 (142)
142 TIGR02729 Obg_CgtA Obg family 99.9 4.5E-23 9.8E-28 156.8 17.4 160 8-172 158-328 (329)
143 PRK04213 GTP-binding protein; 99.9 1.1E-23 2.4E-28 150.9 12.7 155 4-175 6-194 (201)
144 TIGR03156 GTP_HflX GTP-binding 99.9 5.3E-23 1.2E-27 157.8 17.0 154 5-171 187-350 (351)
145 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-23 3E-28 142.1 12.1 147 8-168 1-156 (156)
146 cd01879 FeoB Ferrous iron tran 99.9 1.2E-22 2.5E-27 140.1 15.8 147 12-172 1-156 (158)
147 PRK15494 era GTPase Era; Provi 99.9 1E-22 2.2E-27 156.0 16.2 158 5-177 50-220 (339)
148 PRK03003 GTP-binding protein D 99.9 7.1E-23 1.5E-27 163.5 15.5 163 5-178 209-387 (472)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.4E-22 3E-27 139.4 14.9 145 8-172 2-156 (157)
150 cd01881 Obg_like The Obg-like 99.9 8.9E-23 1.9E-27 143.1 13.8 159 12-171 1-175 (176)
151 cd01894 EngA1 EngA1 subfamily. 99.9 1.7E-22 3.7E-27 139.0 14.5 145 11-171 1-156 (157)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.8E-22 6.2E-27 157.9 16.9 151 6-175 202-362 (442)
153 KOG0075|consensus 99.9 1.1E-23 2.5E-28 136.7 6.8 158 7-173 20-182 (186)
154 cd01891 TypA_BipA TypA (tyrosi 99.9 3.7E-22 8E-27 142.2 14.7 146 8-162 3-171 (194)
155 PRK05291 trmE tRNA modificatio 99.9 3.4E-22 7.3E-27 158.2 15.9 148 6-174 214-371 (449)
156 cd00881 GTP_translation_factor 99.9 5E-22 1.1E-26 140.8 14.9 156 9-173 1-187 (189)
157 cd04163 Era Era subfamily. Er 99.9 7.8E-22 1.7E-26 136.8 15.6 156 7-171 3-167 (168)
158 TIGR03594 GTPase_EngA ribosome 99.9 9E-22 1.9E-26 156.1 17.8 161 5-176 170-347 (429)
159 PRK12297 obgE GTPase CgtA; Rev 99.9 1.6E-21 3.4E-26 152.1 18.5 161 8-176 159-330 (424)
160 PF08477 Miro: Miro-like prote 99.9 1.9E-22 4.1E-27 132.7 11.4 116 9-127 1-119 (119)
161 PRK03003 GTP-binding protein D 99.9 7.3E-22 1.6E-26 157.7 15.6 155 4-174 35-200 (472)
162 PRK00454 engB GTP-binding prot 99.9 1.4E-21 3.1E-26 139.4 15.3 161 3-174 20-195 (196)
163 PRK11058 GTPase HflX; Provisio 99.9 2.7E-21 5.9E-26 151.5 18.0 157 6-174 196-363 (426)
164 PRK00089 era GTPase Era; Revie 99.9 1.6E-21 3.5E-26 147.3 16.2 160 6-176 4-174 (292)
165 KOG0071|consensus 99.9 3.9E-22 8.5E-27 128.6 10.8 161 5-173 15-178 (180)
166 PRK12298 obgE GTPase CgtA; Rev 99.9 2.7E-21 5.9E-26 150.0 17.7 163 9-176 161-336 (390)
167 KOG3883|consensus 99.9 9.9E-21 2.2E-25 124.0 16.7 166 6-175 8-177 (198)
168 cd01895 EngA2 EngA2 subfamily. 99.9 3.7E-21 8E-26 134.4 15.9 154 7-171 2-173 (174)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 2.7E-21 5.9E-26 152.6 16.5 166 8-176 160-343 (500)
170 COG1159 Era GTPase [General fu 99.9 1.5E-21 3.2E-26 142.2 13.2 164 5-179 4-178 (298)
171 cd01889 SelB_euk SelB subfamil 99.9 2.4E-21 5.1E-26 137.9 14.1 157 8-173 1-186 (192)
172 PRK15467 ethanolamine utilizat 99.9 2.2E-21 4.8E-26 133.6 13.3 141 9-175 3-149 (158)
173 TIGR01393 lepA GTP-binding pro 99.9 6.4E-21 1.4E-25 155.1 17.3 157 8-175 4-182 (595)
174 TIGR03598 GTPase_YsxC ribosome 99.9 2.5E-21 5.4E-26 136.3 12.8 148 3-162 14-179 (179)
175 cd01888 eIF2_gamma eIF2-gamma 99.9 6.1E-21 1.3E-25 136.8 13.6 113 55-174 83-200 (203)
176 PRK09518 bifunctional cytidyla 99.9 1.4E-20 3E-25 156.8 16.4 160 5-176 448-624 (712)
177 PRK00093 GTP-binding protein D 99.9 2.6E-20 5.6E-25 148.0 17.0 149 8-172 2-161 (435)
178 cd04105 SR_beta Signal recogni 99.9 2.6E-20 5.7E-25 133.3 15.0 121 9-131 2-124 (203)
179 TIGR00487 IF-2 translation ini 99.9 4.6E-20 1E-24 149.5 18.1 156 5-170 85-247 (587)
180 cd00880 Era_like Era (E. coli 99.9 1.6E-20 3.4E-25 129.2 12.6 150 12-171 1-162 (163)
181 PRK00093 GTP-binding protein D 99.9 1.9E-20 4.2E-25 148.7 14.7 161 5-176 171-347 (435)
182 TIGR03594 GTPase_EngA ribosome 99.9 3.6E-20 7.8E-25 147.0 16.0 150 9-174 1-161 (429)
183 CHL00189 infB translation init 99.9 3E-20 6.6E-25 152.8 15.9 159 5-172 242-409 (742)
184 KOG0076|consensus 99.9 3E-21 6.4E-26 129.0 7.8 163 6-175 16-189 (197)
185 KOG1673|consensus 99.8 1.4E-20 3E-25 123.6 10.4 162 7-174 20-187 (205)
186 COG1160 Predicted GTPases [Gen 99.8 4.5E-20 9.8E-25 141.5 13.9 148 8-173 4-165 (444)
187 PF00009 GTP_EFTU: Elongation 99.8 2.9E-20 6.4E-25 131.8 12.0 158 7-173 3-187 (188)
188 cd01896 DRG The developmentall 99.8 3.3E-19 7.1E-24 130.1 17.3 154 8-172 1-225 (233)
189 TIGR00437 feoB ferrous iron tr 99.8 7.5E-20 1.6E-24 149.0 15.1 145 14-172 1-154 (591)
190 TIGR00475 selB selenocysteine- 99.8 1.2E-19 2.5E-24 147.7 15.4 156 8-174 1-167 (581)
191 PRK09554 feoB ferrous iron tra 99.8 2.8E-19 6.1E-24 148.9 17.9 152 7-172 3-167 (772)
192 PRK05306 infB translation init 99.8 2.3E-19 5E-24 148.8 17.1 156 5-171 288-450 (787)
193 KOG1423|consensus 99.8 8.1E-20 1.8E-24 132.9 12.5 166 3-176 68-274 (379)
194 KOG0072|consensus 99.8 1.2E-20 2.6E-25 122.4 7.3 164 4-175 15-181 (182)
195 PRK09518 bifunctional cytidyla 99.8 3.3E-19 7.1E-24 148.7 16.4 153 6-174 274-437 (712)
196 KOG0074|consensus 99.8 1.4E-19 2.9E-24 117.2 10.6 164 2-172 12-178 (185)
197 KOG0096|consensus 99.8 5.6E-20 1.2E-24 124.7 9.2 160 6-173 9-169 (216)
198 PRK05433 GTP-binding protein L 99.8 7.7E-19 1.7E-23 143.2 17.5 162 3-175 3-186 (600)
199 COG0486 ThdF Predicted GTPase 99.8 4.6E-19 9.9E-24 136.4 13.9 153 6-175 216-378 (454)
200 COG1160 Predicted GTPases [Gen 99.8 1.4E-18 3E-23 133.4 15.0 161 6-179 177-357 (444)
201 KOG4423|consensus 99.8 1.3E-21 2.8E-26 132.2 -1.9 173 4-177 22-198 (229)
202 TIGR00491 aIF-2 translation in 99.8 2.9E-18 6.3E-23 139.0 16.5 154 7-172 4-215 (590)
203 TIGR00483 EF-1_alpha translati 99.8 1.1E-18 2.3E-23 138.2 13.6 159 1-165 1-199 (426)
204 cd01876 YihA_EngB The YihA (En 99.8 5.2E-18 1.1E-22 117.8 15.3 151 9-171 1-169 (170)
205 TIGR03680 eif2g_arch translati 99.8 9.5E-19 2.1E-23 137.4 12.6 161 5-173 2-196 (406)
206 PRK12317 elongation factor 1-a 99.8 2.9E-18 6.2E-23 135.7 14.2 155 4-165 3-197 (425)
207 PRK10218 GTP-binding protein; 99.8 7.4E-18 1.6E-22 137.0 16.8 161 6-175 4-197 (607)
208 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.6E-18 3.4E-23 124.8 11.5 148 9-164 1-185 (208)
209 cd04168 TetM_like Tet(M)-like 99.8 3.9E-18 8.4E-23 124.6 13.3 113 9-130 1-130 (237)
210 PF10662 PduV-EutP: Ethanolami 99.8 2.9E-18 6.3E-23 113.7 11.4 135 9-169 3-142 (143)
211 COG2229 Predicted GTPase [Gene 99.8 8.8E-18 1.9E-22 113.9 13.8 156 6-171 9-176 (187)
212 COG2262 HflX GTPases [General 99.8 6.6E-18 1.4E-22 127.9 14.6 163 4-178 189-361 (411)
213 TIGR01394 TypA_BipA GTP-bindin 99.8 4.1E-18 8.8E-23 138.6 14.2 158 9-175 3-193 (594)
214 COG0370 FeoB Fe2+ transport sy 99.8 8.5E-18 1.8E-22 134.6 15.1 157 6-176 2-167 (653)
215 COG0218 Predicted GTPase [Gene 99.8 1.2E-17 2.6E-22 115.7 13.6 159 4-174 21-198 (200)
216 PRK04000 translation initiatio 99.8 5.4E-18 1.2E-22 133.1 13.4 164 3-174 5-202 (411)
217 KOG1707|consensus 99.8 3.1E-18 6.8E-23 134.1 11.4 170 3-175 5-177 (625)
218 PRK10512 selenocysteinyl-tRNA- 99.8 1.2E-17 2.6E-22 136.5 15.3 155 9-174 2-167 (614)
219 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 7.1E-18 1.5E-22 121.7 12.2 162 9-175 1-178 (232)
220 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.9E-17 6.3E-22 116.6 14.5 147 7-162 2-172 (195)
221 cd04165 GTPBP1_like GTPBP1-lik 99.8 3E-17 6.4E-22 118.9 14.6 152 9-170 1-220 (224)
222 COG1084 Predicted GTPase [Gene 99.8 3.5E-17 7.6E-22 120.6 14.8 160 4-173 165-336 (346)
223 cd04104 p47_IIGP_like p47 (47- 99.8 3.4E-17 7.3E-22 116.9 14.1 162 7-180 1-191 (197)
224 KOG1489|consensus 99.8 2.8E-17 6.1E-22 120.4 12.8 157 8-171 197-365 (366)
225 PRK04004 translation initiatio 99.8 7.4E-17 1.6E-21 131.2 16.5 155 5-171 4-216 (586)
226 cd04167 Snu114p Snu114p subfam 99.8 2.6E-17 5.7E-22 118.9 12.4 112 9-129 2-136 (213)
227 cd01883 EF1_alpha Eukaryotic e 99.7 2.3E-17 4.9E-22 119.6 10.0 147 9-162 1-194 (219)
228 COG1163 DRG Predicted GTPase [ 99.7 1.8E-16 3.9E-21 116.6 14.3 159 4-173 60-289 (365)
229 TIGR00485 EF-Tu translation el 99.7 1E-16 2.2E-21 125.6 13.8 149 2-159 7-179 (394)
230 COG0536 Obg Predicted GTPase [ 99.7 1.4E-16 3.1E-21 118.0 13.5 164 9-176 161-336 (369)
231 PRK12736 elongation factor Tu; 99.7 2.1E-16 4.5E-21 123.8 14.6 162 3-173 8-201 (394)
232 cd01899 Ygr210 Ygr210 subfamil 99.7 7.6E-16 1.6E-20 116.6 14.7 163 10-175 1-271 (318)
233 PRK12735 elongation factor Tu; 99.7 5.4E-16 1.2E-20 121.5 14.3 161 3-172 8-202 (396)
234 cd04169 RF3 RF3 subfamily. Pe 99.7 8.7E-16 1.9E-20 114.1 14.7 115 8-131 3-138 (267)
235 CHL00071 tufA elongation facto 99.7 6.1E-16 1.3E-20 121.7 14.1 149 3-160 8-180 (409)
236 cd01885 EF2 EF2 (for archaea a 99.7 1.7E-15 3.7E-20 109.4 14.5 112 9-129 2-138 (222)
237 PRK05124 cysN sulfate adenylyl 99.7 3.8E-16 8.3E-21 124.5 12.1 155 2-164 22-216 (474)
238 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-15 2.3E-20 100.1 11.5 105 9-125 1-116 (116)
239 PRK00741 prfC peptide chain re 99.7 1.1E-15 2.4E-20 123.0 13.8 117 5-130 8-145 (526)
240 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 3.6E-15 7.8E-20 106.4 14.5 160 8-174 1-185 (196)
241 cd04170 EF-G_bact Elongation f 99.7 3.6E-16 7.7E-21 116.8 8.4 142 9-161 1-161 (268)
242 PRK00049 elongation factor Tu; 99.7 4.2E-15 9.1E-20 116.5 14.6 161 3-172 8-202 (396)
243 cd01850 CDC_Septin CDC/Septin. 99.7 1.9E-15 4.2E-20 112.8 12.1 143 6-157 3-186 (276)
244 cd01886 EF-G Elongation factor 99.7 2.5E-15 5.4E-20 111.8 12.6 113 9-130 1-130 (270)
245 COG3596 Predicted GTPase [Gene 99.7 1.8E-15 4E-20 109.2 11.3 162 4-174 36-223 (296)
246 KOG0077|consensus 99.7 6.9E-16 1.5E-20 102.8 8.4 158 6-171 19-191 (193)
247 PRK13351 elongation factor G; 99.7 1.6E-15 3.4E-20 126.6 12.5 117 5-130 6-139 (687)
248 TIGR02034 CysN sulfate adenyly 99.7 1.2E-15 2.7E-20 119.8 11.0 148 8-163 1-187 (406)
249 PLN03127 Elongation factor Tu; 99.6 1.4E-14 3E-19 114.8 16.2 161 4-173 58-252 (447)
250 TIGR00503 prfC peptide chain r 99.6 9.8E-15 2.1E-19 117.6 15.2 117 4-129 8-145 (527)
251 PLN00043 elongation factor 1-a 99.6 5.1E-15 1.1E-19 117.2 13.1 154 2-163 2-203 (447)
252 PTZ00327 eukaryotic translatio 99.6 4E-15 8.6E-20 117.7 12.4 164 4-174 31-234 (460)
253 PTZ00141 elongation factor 1- 99.6 6.3E-15 1.4E-19 116.8 13.4 155 1-163 1-203 (446)
254 PRK09866 hypothetical protein; 99.6 2.8E-14 6.1E-19 114.6 16.4 109 55-170 230-350 (741)
255 PLN03126 Elongation factor Tu; 99.6 6.1E-15 1.3E-19 117.4 12.7 148 4-160 78-249 (478)
256 cd00066 G-alpha G protein alph 99.6 1.5E-14 3.2E-19 110.2 13.7 120 53-176 159-314 (317)
257 PRK09602 translation-associate 99.6 2E-14 4.3E-19 112.0 14.6 83 7-89 1-113 (396)
258 PF09439 SRPRB: Signal recogni 99.6 2.2E-15 4.8E-20 104.4 7.8 119 7-131 3-127 (181)
259 PRK05506 bifunctional sulfate 99.6 1.1E-14 2.3E-19 120.6 13.1 152 4-163 21-211 (632)
260 KOG0462|consensus 99.6 3.1E-14 6.7E-19 111.3 12.8 163 5-176 58-238 (650)
261 smart00275 G_alpha G protein a 99.6 8.4E-15 1.8E-19 112.3 8.7 119 54-176 183-337 (342)
262 KOG1191|consensus 99.6 1.8E-14 3.8E-19 111.4 10.4 167 5-175 266-452 (531)
263 COG0532 InfB Translation initi 99.6 2.4E-13 5.1E-18 106.6 16.3 159 6-175 4-172 (509)
264 PRK09435 membrane ATPase/prote 99.6 5.1E-14 1.1E-18 106.8 12.3 114 54-183 148-270 (332)
265 TIGR00484 EF-G translation elo 99.6 9E-14 1.9E-18 116.1 13.7 119 5-132 8-143 (689)
266 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.3E-13 5E-18 101.5 13.8 123 4-131 35-168 (313)
267 PRK12739 elongation factor G; 99.5 2.2E-13 4.7E-18 113.8 15.1 117 5-130 6-139 (691)
268 cd01853 Toc34_like Toc34-like 99.5 1.7E-13 3.6E-18 100.7 12.8 124 3-131 27-164 (249)
269 KOG0090|consensus 99.5 1.4E-13 3E-18 95.8 10.8 118 5-129 36-158 (238)
270 PF04548 AIG1: AIG1 family; I 99.5 3.2E-13 7E-18 97.4 13.0 162 8-176 1-189 (212)
271 COG4917 EutP Ethanolamine util 99.5 1.4E-13 3.1E-18 87.6 8.8 137 8-170 2-143 (148)
272 KOG1490|consensus 99.5 1.2E-13 2.7E-18 107.0 10.1 173 4-184 165-352 (620)
273 PRK13768 GTPase; Provisional 99.5 3.3E-13 7.1E-18 99.7 11.1 113 56-173 98-247 (253)
274 KOG1145|consensus 99.5 1.4E-12 3E-17 102.3 14.7 159 5-173 151-316 (683)
275 PF03308 ArgK: ArgK protein; 99.5 1.9E-14 4.2E-19 103.8 3.8 166 3-184 25-241 (266)
276 PRK12740 elongation factor G; 99.5 3.9E-13 8.4E-18 112.2 11.4 109 13-130 1-126 (668)
277 COG1703 ArgK Putative periplas 99.5 5.5E-13 1.2E-17 97.7 10.4 162 2-179 46-260 (323)
278 COG5256 TEF1 Translation elong 99.5 7E-13 1.5E-17 100.9 11.1 158 2-165 2-203 (428)
279 TIGR00101 ureG urease accessor 99.5 3.6E-12 7.9E-17 90.8 13.8 102 55-172 92-195 (199)
280 TIGR00490 aEF-2 translation el 99.5 5.6E-13 1.2E-17 111.6 10.9 118 4-130 16-152 (720)
281 PTZ00258 GTP-binding protein; 99.4 4.9E-12 1.1E-16 97.9 14.7 86 4-89 18-126 (390)
282 cd01882 BMS1 Bms1. Bms1 is an 99.4 3.4E-12 7.4E-17 92.8 13.1 140 4-159 36-182 (225)
283 KOG1532|consensus 99.4 1.6E-13 3.5E-18 99.1 5.7 124 55-182 116-273 (366)
284 COG0481 LepA Membrane GTPase L 99.4 1.9E-12 4.2E-17 100.0 11.9 159 7-176 9-189 (603)
285 KOG0082|consensus 99.4 4.7E-13 1E-17 101.2 8.4 140 34-177 166-348 (354)
286 TIGR00157 ribosome small subun 99.4 6E-13 1.3E-17 97.8 8.2 97 65-170 23-120 (245)
287 PRK00007 elongation factor G; 99.4 2.1E-12 4.5E-17 107.9 12.4 119 5-132 8-143 (693)
288 KOG1707|consensus 99.4 1E-11 2.2E-16 98.1 14.3 163 4-176 422-586 (625)
289 TIGR00073 hypB hydrogenase acc 99.4 6.4E-12 1.4E-16 90.4 11.8 151 5-171 20-205 (207)
290 TIGR00750 lao LAO/AO transport 99.4 4.1E-12 8.9E-17 96.3 11.1 104 54-173 126-238 (300)
291 PRK14845 translation initiatio 99.4 1.9E-11 4E-16 104.6 14.9 143 18-172 472-672 (1049)
292 COG5257 GCD11 Translation init 99.4 3E-12 6.5E-17 94.5 8.5 167 5-178 8-207 (415)
293 PF05049 IIGP: Interferon-indu 99.4 1.4E-11 3E-16 94.5 12.2 165 5-181 33-226 (376)
294 KOG0461|consensus 99.4 2.4E-11 5.2E-16 90.7 12.9 167 1-176 1-196 (522)
295 KOG3886|consensus 99.3 4.3E-12 9.3E-17 89.5 7.4 160 6-172 3-177 (295)
296 PF05783 DLIC: Dynein light in 99.3 4.6E-11 9.9E-16 94.7 14.1 169 5-176 23-267 (472)
297 PF03029 ATP_bind_1: Conserved 99.3 7.4E-13 1.6E-17 96.7 3.4 112 56-172 92-236 (238)
298 KOG3905|consensus 99.3 7E-11 1.5E-15 87.6 13.3 164 7-173 52-290 (473)
299 TIGR02836 spore_IV_A stage IV 99.3 1.8E-10 4E-15 88.6 15.7 160 4-173 14-237 (492)
300 PRK07560 elongation factor EF- 99.3 3.6E-11 7.7E-16 101.2 13.0 118 3-129 16-152 (731)
301 PLN00116 translation elongatio 99.3 1.3E-11 2.8E-16 105.1 9.8 118 3-129 15-163 (843)
302 PRK09601 GTP-binding protein Y 99.3 1.8E-10 3.9E-15 88.3 14.9 82 8-89 3-107 (364)
303 PF00350 Dynamin_N: Dynamin fa 99.3 1.5E-11 3.4E-16 85.5 8.5 63 56-126 102-168 (168)
304 PTZ00416 elongation factor 2; 99.3 1.3E-11 2.9E-16 104.8 9.6 118 3-129 15-157 (836)
305 COG2895 CysN GTPases - Sulfate 99.3 6.5E-11 1.4E-15 88.6 11.6 149 4-163 3-193 (431)
306 smart00010 small_GTPase Small 99.3 1.1E-10 2.4E-15 76.9 10.9 114 8-162 1-115 (124)
307 COG1217 TypA Predicted membran 99.3 1.1E-10 2.3E-15 90.3 11.9 162 7-177 5-199 (603)
308 KOG1486|consensus 99.2 7.2E-10 1.6E-14 79.6 14.6 159 4-173 59-288 (364)
309 COG0378 HypB Ni2+-binding GTPa 99.2 8.6E-12 1.9E-16 86.2 4.0 80 80-172 119-200 (202)
310 KOG0705|consensus 99.2 4.4E-11 9.5E-16 94.0 7.9 164 2-175 25-191 (749)
311 TIGR00993 3a0901s04IAP86 chlor 99.2 3.1E-10 6.7E-15 92.1 12.3 120 6-130 117-250 (763)
312 smart00053 DYNc Dynamin, GTPas 99.2 4.8E-10 1E-14 81.7 11.5 70 55-132 125-208 (240)
313 COG0012 Predicted GTPase, prob 99.1 2.5E-09 5.3E-14 81.3 14.1 84 6-89 1-108 (372)
314 PF00503 G-alpha: G-protein al 99.1 8.1E-10 1.8E-14 86.8 11.5 116 53-172 234-389 (389)
315 PRK10463 hydrogenase nickel in 99.1 2.8E-11 6.1E-16 89.9 3.0 55 117-171 231-287 (290)
316 KOG0085|consensus 99.1 6.9E-11 1.5E-15 83.8 3.9 139 34-176 170-352 (359)
317 PF00735 Septin: Septin; Inte 99.1 8.8E-10 1.9E-14 82.5 10.0 138 7-153 4-181 (281)
318 KOG0410|consensus 99.1 1.3E-10 2.8E-15 86.1 5.4 153 5-174 176-342 (410)
319 COG3276 SelB Selenocysteine-sp 99.1 2.8E-09 6E-14 82.2 11.7 157 9-173 2-162 (447)
320 KOG0458|consensus 99.1 8E-10 1.7E-14 87.6 8.5 152 6-164 176-373 (603)
321 KOG0468|consensus 99.0 1.9E-09 4E-14 86.8 10.0 118 2-128 123-261 (971)
322 cd01859 MJ1464 MJ1464. This f 99.0 8.6E-10 1.9E-14 75.8 7.1 96 68-174 2-97 (156)
323 cd01900 YchF YchF subfamily. 99.0 5.3E-09 1.2E-13 77.8 11.0 80 10-89 1-103 (274)
324 KOG1487|consensus 99.0 6.6E-09 1.4E-13 75.0 9.8 154 7-172 59-280 (358)
325 KOG1144|consensus 99.0 5.6E-09 1.2E-13 85.1 10.4 161 6-175 474-689 (1064)
326 KOG3887|consensus 99.0 1.5E-08 3.2E-13 72.5 11.4 169 4-178 24-207 (347)
327 cd01855 YqeH YqeH. YqeH is an 99.0 4.7E-09 1E-13 74.5 9.1 94 68-173 24-125 (190)
328 KOG0099|consensus 99.0 4.9E-09 1.1E-13 75.7 8.9 122 53-178 200-374 (379)
329 PRK12289 GTPase RsgA; Reviewed 99.0 2.7E-09 5.9E-14 82.2 8.2 94 67-170 78-172 (352)
330 COG0480 FusA Translation elong 99.0 1.1E-08 2.3E-13 84.9 12.0 117 5-131 8-143 (697)
331 cd01854 YjeQ_engC YjeQ/EngC. 98.9 4.3E-09 9.4E-14 79.3 8.1 89 72-170 72-161 (287)
332 COG4108 PrfC Peptide chain rel 98.9 1.2E-08 2.5E-13 78.8 10.0 133 9-152 14-167 (528)
333 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.5E-09 1.2E-13 70.6 6.6 54 8-66 84-139 (141)
334 cd04178 Nucleostemin_like Nucl 98.9 7.1E-09 1.5E-13 72.2 6.9 55 6-65 116-172 (172)
335 PRK12288 GTPase RsgA; Reviewed 98.9 1.5E-08 3.3E-13 78.0 9.3 88 75-170 117-205 (347)
336 PRK00098 GTPase RsgA; Reviewed 98.8 1.4E-08 3.1E-13 77.0 8.0 86 75-169 77-163 (298)
337 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.1E-08 2.4E-13 70.4 6.8 56 6-65 101-157 (157)
338 COG5019 CDC3 Septin family pro 98.8 6.2E-08 1.3E-12 73.4 10.8 138 5-151 21-199 (373)
339 KOG1954|consensus 98.8 4.6E-08 1E-12 74.1 9.6 120 5-132 56-227 (532)
340 KOG2655|consensus 98.8 1.4E-07 3E-12 72.0 11.9 142 6-156 20-200 (366)
341 KOG0448|consensus 98.8 1.7E-07 3.7E-12 76.0 12.8 93 56-157 207-310 (749)
342 cd01855 YqeH YqeH. YqeH is an 98.8 1.7E-08 3.7E-13 71.7 5.5 58 7-65 127-190 (190)
343 KOG2486|consensus 98.8 1.5E-08 3.2E-13 73.9 5.2 157 4-172 133-315 (320)
344 COG0050 TufB GTPases - transla 98.7 1.8E-07 3.9E-12 69.0 10.6 163 4-174 9-202 (394)
345 COG5192 BMS1 GTP-binding prote 98.7 1.2E-07 2.5E-12 75.7 10.1 138 4-156 66-209 (1077)
346 TIGR03596 GTPase_YlqF ribosome 98.7 4.9E-08 1.1E-12 73.3 7.5 56 5-65 116-173 (276)
347 cd01856 YlqF YlqF. Proteins o 98.7 4.9E-08 1.1E-12 68.1 6.7 57 5-65 113-170 (171)
348 cd01859 MJ1464 MJ1464. This f 98.7 5.8E-08 1.3E-12 66.7 7.0 58 4-65 98-156 (156)
349 KOG1547|consensus 98.7 3E-07 6.4E-12 65.9 10.4 151 7-166 46-236 (336)
350 PRK09563 rbgA GTPase YlqF; Rev 98.7 7.2E-08 1.6E-12 72.8 7.7 57 5-66 119-177 (287)
351 TIGR03348 VI_IcmF type VI secr 98.7 3.7E-07 8E-12 80.8 12.7 112 10-130 114-257 (1169)
352 COG5258 GTPBP1 GTPase [General 98.7 4.3E-07 9.3E-12 69.3 11.0 159 4-171 114-337 (527)
353 PF09547 Spore_IV_A: Stage IV 98.7 2.5E-06 5.3E-11 66.3 15.2 159 4-172 14-236 (492)
354 TIGR03597 GTPase_YqeH ribosome 98.7 1.1E-07 2.3E-12 74.0 8.1 95 65-171 50-151 (360)
355 cd01851 GBP Guanylate-binding 98.7 6E-07 1.3E-11 65.3 11.4 86 5-90 5-103 (224)
356 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.1E-07 2.4E-12 65.4 7.1 90 75-172 5-94 (157)
357 cd01849 YlqF_related_GTPase Yl 98.7 1.2E-07 2.6E-12 65.1 7.2 57 5-65 98-155 (155)
358 TIGR00092 GTP-binding protein 98.7 5.5E-07 1.2E-11 69.5 11.3 82 8-89 3-108 (368)
359 cd03112 CobW_like The function 98.6 4.4E-07 9.6E-12 62.4 9.6 64 54-128 86-158 (158)
360 KOG1491|consensus 98.6 1.2E-07 2.6E-12 71.1 6.8 89 1-89 14-125 (391)
361 KOG0466|consensus 98.6 2.7E-08 5.8E-13 73.5 3.0 165 4-175 35-243 (466)
362 COG1618 Predicted nucleotide k 98.6 3E-06 6.5E-11 57.2 12.0 148 5-173 3-176 (179)
363 KOG1143|consensus 98.6 1.4E-07 3E-12 71.7 6.3 151 7-166 167-381 (591)
364 PRK14974 cell division protein 98.6 2.5E-07 5.3E-12 70.9 7.6 95 55-166 223-323 (336)
365 COG1161 Predicted GTPases [Gen 98.6 1.8E-07 3.9E-12 71.6 6.6 56 6-66 131-188 (322)
366 cd01856 YlqF YlqF. Proteins o 98.6 4.1E-07 8.8E-12 63.5 7.9 92 69-173 10-101 (171)
367 cd01849 YlqF_related_GTPase Yl 98.6 2.9E-07 6.3E-12 63.2 6.8 85 80-173 1-85 (155)
368 COG0523 Putative GTPases (G3E 98.5 6.1E-06 1.3E-10 63.0 13.9 100 55-165 85-193 (323)
369 TIGR01425 SRP54_euk signal rec 98.5 2.1E-06 4.5E-11 67.7 11.6 134 6-154 99-273 (429)
370 PRK10416 signal recognition pa 98.5 2.7E-06 6E-11 64.9 10.8 95 53-164 195-301 (318)
371 PRK12288 GTPase RsgA; Reviewed 98.5 4.5E-07 9.8E-12 70.0 6.1 55 10-67 208-269 (347)
372 PF03193 DUF258: Protein of un 98.5 3.3E-07 7.1E-12 62.6 4.8 24 8-31 36-59 (161)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 9.2E-07 2E-11 59.7 6.8 79 73-160 6-84 (141)
374 PRK01889 GTPase RsgA; Reviewed 98.4 1.1E-06 2.3E-11 68.4 8.0 84 75-169 109-193 (356)
375 PRK12289 GTPase RsgA; Reviewed 98.4 5.6E-07 1.2E-11 69.5 6.3 23 9-31 174-196 (352)
376 KOG0447|consensus 98.4 1.7E-05 3.7E-10 63.5 14.2 73 56-135 413-498 (980)
377 PF02492 cobW: CobW/HypB/UreG, 98.4 2.2E-07 4.8E-12 65.2 3.2 69 54-132 84-157 (178)
378 TIGR03596 GTPase_YlqF ribosome 98.4 2.3E-06 4.9E-11 64.3 8.6 93 69-174 12-104 (276)
379 TIGR00064 ftsY signal recognit 98.4 1.7E-06 3.7E-11 64.7 7.8 94 54-164 154-259 (272)
380 cd03114 ArgK-like The function 98.4 3.1E-06 6.8E-11 57.5 8.4 58 54-127 91-148 (148)
381 KOG0463|consensus 98.3 2.8E-06 6E-11 64.9 8.0 152 7-167 133-352 (641)
382 TIGR00157 ribosome small subun 98.3 1.4E-06 3E-11 64.3 6.3 24 8-31 121-144 (245)
383 PRK14722 flhF flagellar biosyn 98.3 1.7E-05 3.6E-10 61.7 12.3 23 7-29 137-159 (374)
384 PRK11537 putative GTP-binding 98.3 1.3E-05 2.7E-10 61.4 11.0 86 55-154 91-186 (318)
385 TIGR03597 GTPase_YqeH ribosome 98.3 1.8E-06 3.8E-11 67.3 6.4 58 8-68 155-217 (360)
386 KOG0460|consensus 98.3 7.9E-06 1.7E-10 61.6 8.6 162 4-173 51-245 (449)
387 COG1162 Predicted GTPases [Gen 98.3 7.6E-06 1.6E-10 61.2 8.5 97 66-170 67-164 (301)
388 KOG1424|consensus 98.3 1.6E-06 3.5E-11 68.4 5.0 54 7-65 314-369 (562)
389 PRK09563 rbgA GTPase YlqF; Rev 98.2 6.2E-06 1.4E-10 62.3 8.1 93 69-174 15-107 (287)
390 PF00448 SRP54: SRP54-type pro 98.2 1.9E-05 4.2E-10 56.2 10.0 90 55-161 84-179 (196)
391 PRK13796 GTPase YqeH; Provisio 98.2 2.7E-06 5.8E-11 66.4 5.9 58 7-67 160-222 (365)
392 PRK12727 flagellar biosynthesi 98.2 3E-05 6.6E-10 62.5 11.8 138 7-161 350-523 (559)
393 COG1162 Predicted GTPases [Gen 98.2 3.3E-06 7.2E-11 63.0 5.8 56 9-67 166-228 (301)
394 PRK13796 GTPase YqeH; Provisio 98.2 9.9E-06 2.1E-10 63.3 8.6 93 68-172 59-158 (365)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.1E-06 4.6E-11 64.8 4.7 24 8-31 162-185 (287)
396 COG1419 FlhF Flagellar GTP-bin 98.2 2.1E-05 4.6E-10 61.0 10.1 140 7-163 203-379 (407)
397 TIGR02475 CobW cobalamin biosy 98.2 7E-05 1.5E-09 58.0 12.9 36 55-90 93-135 (341)
398 COG3523 IcmF Type VI protein s 98.2 1.6E-05 3.5E-10 69.5 10.1 153 10-172 128-313 (1188)
399 cd03110 Fer4_NifH_child This p 98.2 8.7E-05 1.9E-09 52.1 12.0 86 53-152 91-176 (179)
400 PRK14721 flhF flagellar biosyn 98.1 3.5E-05 7.6E-10 60.9 10.4 137 7-161 191-365 (420)
401 PRK11889 flhF flagellar biosyn 98.1 6.9E-06 1.5E-10 63.9 6.3 143 6-165 240-420 (436)
402 PRK00098 GTPase RsgA; Reviewed 98.1 7.7E-06 1.7E-10 62.2 6.2 24 8-31 165-188 (298)
403 PRK00771 signal recognition pa 98.1 1.6E-05 3.6E-10 63.1 8.2 135 5-154 93-266 (437)
404 PRK14723 flhF flagellar biosyn 98.1 9.8E-05 2.1E-09 62.2 12.0 140 8-161 186-362 (767)
405 PRK13695 putative NTPase; Prov 98.0 0.00029 6.4E-09 49.2 12.3 22 8-29 1-22 (174)
406 KOG2484|consensus 98.0 9.3E-06 2E-10 62.4 4.1 57 5-65 250-307 (435)
407 KOG0467|consensus 98.0 3.9E-05 8.4E-10 63.5 7.8 115 4-127 6-135 (887)
408 PRK05703 flhF flagellar biosyn 98.0 0.00024 5.1E-09 56.6 12.1 90 55-161 300-396 (424)
409 TIGR00959 ffh signal recogniti 97.9 3.8E-05 8.2E-10 61.0 7.4 87 54-155 182-274 (428)
410 PF06858 NOG1: Nucleolar GTP-b 97.9 5.7E-05 1.2E-09 41.9 5.8 43 79-127 14-58 (58)
411 cd03115 SRP The signal recogni 97.9 0.00023 5.1E-09 49.6 10.3 83 54-151 82-170 (173)
412 PRK06995 flhF flagellar biosyn 97.9 0.00011 2.3E-09 59.1 9.5 22 8-29 257-278 (484)
413 PRK10867 signal recognition pa 97.9 5.3E-05 1.2E-09 60.2 7.0 86 55-155 184-275 (433)
414 PRK12726 flagellar biosynthesi 97.9 0.00011 2.3E-09 57.2 8.3 93 54-163 285-383 (407)
415 KOG1534|consensus 97.8 5.2E-05 1.1E-09 53.6 5.8 23 7-29 3-25 (273)
416 PRK12723 flagellar biosynthesi 97.8 0.0011 2.3E-08 52.2 13.7 139 6-161 173-351 (388)
417 KOG0465|consensus 97.8 2.9E-05 6.2E-10 62.8 4.9 117 8-134 40-174 (721)
418 PF03266 NTPase_1: NTPase; In 97.8 7.1E-05 1.5E-09 52.0 6.1 135 9-161 1-163 (168)
419 PRK06731 flhF flagellar biosyn 97.8 0.00034 7.3E-09 52.3 9.7 92 54-163 154-252 (270)
420 PRK08118 topology modulation p 97.8 2.4E-05 5.2E-10 54.3 3.2 21 9-29 3-23 (167)
421 PF13207 AAA_17: AAA domain; P 97.8 2.3E-05 5E-10 51.2 3.0 22 9-30 1-22 (121)
422 COG0563 Adk Adenylate kinase a 97.8 2.5E-05 5.5E-10 54.7 3.2 22 9-30 2-23 (178)
423 PF11111 CENP-M: Centromere pr 97.7 0.004 8.7E-08 42.9 13.5 141 4-173 12-153 (176)
424 COG3640 CooC CO dehydrogenase 97.7 0.00048 1E-08 49.7 9.1 62 56-128 135-197 (255)
425 PRK07261 topology modulation p 97.7 3.4E-05 7.4E-10 53.8 3.2 21 9-29 2-22 (171)
426 KOG2485|consensus 97.7 9.2E-05 2E-09 55.4 5.4 63 4-67 140-208 (335)
427 KOG3859|consensus 97.7 0.00016 3.4E-09 53.4 6.5 119 7-134 42-194 (406)
428 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00062 1.4E-08 42.2 8.6 69 10-91 2-71 (99)
429 KOG0464|consensus 97.7 1.7E-05 3.6E-10 61.5 1.4 116 7-131 37-169 (753)
430 cd02038 FleN-like FleN is a me 97.7 0.0014 3E-08 44.1 10.4 101 12-128 5-109 (139)
431 KOG2743|consensus 97.6 6.9E-05 1.5E-09 55.8 4.1 73 54-134 145-229 (391)
432 PF13671 AAA_33: AAA domain; P 97.6 4.4E-05 9.6E-10 51.4 2.7 20 10-29 2-21 (143)
433 PRK12724 flagellar biosynthesi 97.6 0.00024 5.3E-09 56.0 6.6 139 8-163 224-400 (432)
434 cd02019 NK Nucleoside/nucleoti 97.6 7.8E-05 1.7E-09 43.7 3.1 21 10-30 2-22 (69)
435 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00021 4.6E-09 47.4 5.3 23 8-30 23-45 (133)
436 KOG4273|consensus 97.6 0.0012 2.5E-08 48.2 9.3 110 9-128 6-121 (418)
437 PF13521 AAA_28: AAA domain; P 97.6 4.8E-05 1E-09 52.6 2.3 22 9-30 1-22 (163)
438 PF13555 AAA_29: P-loop contai 97.5 9.8E-05 2.1E-09 42.0 3.0 21 9-29 25-45 (62)
439 PF05621 TniB: Bacterial TniB 97.5 0.00067 1.4E-08 51.1 8.1 107 2-125 56-189 (302)
440 KOG2423|consensus 97.5 0.00013 2.8E-09 56.4 4.3 82 4-92 304-388 (572)
441 PF02367 UPF0079: Uncharacteri 97.5 0.00025 5.3E-09 46.4 4.9 23 8-30 16-38 (123)
442 PRK14738 gmk guanylate kinase; 97.5 0.00018 3.9E-09 51.8 4.7 27 4-30 10-36 (206)
443 cd00009 AAA The AAA+ (ATPases 97.5 0.00094 2E-08 44.6 8.1 25 7-31 19-43 (151)
444 cd02036 MinD Bacterial cell di 97.5 0.0049 1.1E-07 43.0 11.9 84 56-151 64-147 (179)
445 cd02042 ParA ParA and ParB of 97.5 0.0025 5.5E-08 40.3 9.5 82 10-102 2-84 (104)
446 cd03111 CpaE_like This protein 97.5 0.003 6.6E-08 40.3 9.7 63 56-125 44-106 (106)
447 COG1116 TauB ABC-type nitrate/ 97.4 0.00011 2.4E-09 53.4 3.0 20 10-29 32-51 (248)
448 KOG1970|consensus 97.4 0.0014 3.1E-08 52.8 9.2 89 80-172 195-283 (634)
449 COG1126 GlnQ ABC-type polar am 97.4 0.00012 2.5E-09 52.2 2.9 21 9-29 30-50 (240)
450 PRK06217 hypothetical protein; 97.4 0.00014 3E-09 51.3 3.3 23 8-30 2-24 (183)
451 COG1136 SalX ABC-type antimicr 97.4 0.00013 2.9E-09 52.6 3.0 21 9-29 33-53 (226)
452 PRK10646 ADP-binding protein; 97.4 0.00073 1.6E-08 45.9 6.4 22 9-30 30-51 (153)
453 KOG0780|consensus 97.4 0.00017 3.7E-09 55.6 3.6 96 4-99 98-234 (483)
454 PRK14530 adenylate kinase; Pro 97.4 0.00016 3.5E-09 52.3 3.2 22 8-29 4-25 (215)
455 PF00005 ABC_tran: ABC transpo 97.4 0.00015 3.2E-09 48.5 2.9 22 9-30 13-34 (137)
456 COG0541 Ffh Signal recognition 97.4 0.00037 8E-09 54.6 5.3 113 5-128 98-251 (451)
457 PF00004 AAA: ATPase family as 97.4 0.00018 4E-09 47.5 3.2 21 10-30 1-21 (132)
458 TIGR00235 udk uridine kinase. 97.4 0.00022 4.7E-09 51.3 3.7 25 5-29 4-28 (207)
459 PRK03839 putative kinase; Prov 97.4 0.00019 4.1E-09 50.5 3.2 21 9-29 2-22 (180)
460 cd00071 GMPK Guanosine monopho 97.4 0.00019 4.1E-09 48.1 3.0 21 10-30 2-22 (137)
461 PRK14737 gmk guanylate kinase; 97.3 0.00025 5.5E-09 50.1 3.8 25 7-31 4-28 (186)
462 PF04665 Pox_A32: Poxvirus A32 97.3 0.00021 4.6E-09 52.2 3.4 26 5-30 11-36 (241)
463 TIGR02322 phosphon_PhnN phosph 97.3 0.00018 4E-09 50.4 3.1 22 9-30 3-24 (179)
464 PRK13851 type IV secretion sys 97.3 0.0023 4.9E-08 49.6 9.1 25 7-31 162-186 (344)
465 PF13238 AAA_18: AAA domain; P 97.3 0.00017 3.7E-09 47.4 2.6 21 10-30 1-21 (129)
466 PRK13949 shikimate kinase; Pro 97.3 0.00023 4.9E-09 49.6 3.3 21 9-29 3-23 (169)
467 cd02023 UMPK Uridine monophosp 97.3 0.0002 4.3E-09 51.1 3.1 21 10-30 2-22 (198)
468 PRK05480 uridine/cytidine kina 97.3 0.00029 6.2E-09 50.8 3.8 26 5-30 4-29 (209)
469 PRK13900 type IV secretion sys 97.3 0.0018 3.8E-08 50.1 8.3 25 7-31 160-184 (332)
470 PRK05541 adenylylsulfate kinas 97.3 0.00032 7E-09 49.1 4.0 29 1-29 1-29 (176)
471 PRK10078 ribose 1,5-bisphospho 97.3 0.00021 4.5E-09 50.6 3.0 22 9-30 4-25 (186)
472 COG1117 PstB ABC-type phosphat 97.3 0.00021 4.5E-09 50.9 2.8 19 10-28 36-54 (253)
473 smart00382 AAA ATPases associa 97.3 0.00027 5.8E-09 46.9 3.2 25 8-32 3-27 (148)
474 COG0194 Gmk Guanylate kinase [ 97.3 0.00017 3.8E-09 50.1 2.2 25 7-31 4-28 (191)
475 TIGR03263 guanyl_kin guanylate 97.3 0.00025 5.3E-09 49.8 3.0 22 9-30 3-24 (180)
476 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00024 5.2E-09 50.1 3.0 22 8-29 4-25 (188)
477 PRK14531 adenylate kinase; Pro 97.3 0.00032 6.9E-09 49.5 3.5 23 7-29 2-24 (183)
478 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00027 5.9E-09 45.0 2.8 21 8-28 16-36 (107)
479 PF03205 MobB: Molybdopterin g 97.3 0.00028 6E-09 47.5 3.0 21 9-29 2-22 (140)
480 KOG0469|consensus 97.2 0.00042 9.1E-09 55.3 4.3 116 4-128 16-162 (842)
481 PRK08233 hypothetical protein; 97.2 0.00034 7.4E-09 49.1 3.6 23 7-29 3-25 (182)
482 cd02025 PanK Pantothenate kina 97.2 0.00027 5.8E-09 51.4 2.9 20 10-29 2-21 (220)
483 PTZ00088 adenylate kinase 1; P 97.2 0.00036 7.9E-09 50.9 3.4 23 7-29 6-28 (229)
484 COG0802 Predicted ATPase or ki 97.2 0.0012 2.6E-08 44.4 5.6 23 8-30 26-48 (149)
485 COG3840 ThiQ ABC-type thiamine 97.2 0.00034 7.4E-09 48.7 3.1 22 8-29 26-47 (231)
486 COG0552 FtsY Signal recognitio 97.2 0.00033 7E-09 53.2 3.2 142 4-164 136-326 (340)
487 PRK10751 molybdopterin-guanine 97.2 0.00047 1E-08 48.0 3.6 23 7-29 6-28 (173)
488 cd01131 PilT Pilus retraction 97.2 0.0025 5.4E-08 45.6 7.5 22 9-30 3-24 (198)
489 PRK14532 adenylate kinase; Pro 97.2 0.00038 8.2E-09 49.3 3.2 21 9-29 2-22 (188)
490 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00035 7.5E-09 49.2 3.0 20 10-29 2-21 (183)
491 PRK09270 nucleoside triphospha 97.2 0.0005 1.1E-08 50.3 3.9 26 4-29 30-55 (229)
492 cd01428 ADK Adenylate kinase ( 97.2 0.00032 6.9E-09 49.8 2.8 22 9-30 1-22 (194)
493 PF03215 Rad17: Rad17 cell cyc 97.2 0.0055 1.2E-07 50.1 10.1 21 9-29 47-67 (519)
494 COG3839 MalK ABC-type sugar tr 97.2 0.00033 7.2E-09 53.7 3.0 20 10-29 32-51 (338)
495 PRK06547 hypothetical protein; 97.2 0.00055 1.2E-08 47.8 3.8 26 5-30 13-38 (172)
496 PRK02496 adk adenylate kinase; 97.2 0.00045 9.7E-09 48.7 3.4 22 8-29 2-23 (184)
497 cd03238 ABC_UvrA The excision 97.1 0.00042 9.1E-09 48.5 3.1 22 8-29 22-43 (176)
498 PRK01889 GTPase RsgA; Reviewed 97.1 0.0005 1.1E-08 53.6 3.8 24 8-31 196-219 (356)
499 TIGR01351 adk adenylate kinase 97.1 0.00036 7.7E-09 50.4 2.8 21 9-29 1-21 (210)
500 PRK00300 gmk guanylate kinase; 97.1 0.0004 8.7E-09 49.8 3.0 24 7-30 5-28 (205)
No 1
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.1e-38 Score=226.69 Aligned_cols=190 Identities=42% Similarity=0.690 Sum_probs=164.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|.+|||||||++++..+.+...+.++.+..+......++..+.+++|||||++++..++..++..+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999988888888888877766667788888999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i 168 (200)
+++.++..+..|+..+...... ...+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++|+++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDE--SAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcc--cCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999888776521 13568999999999998766666667777777888999999999999999999999
Q ss_pred HHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700 169 LNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200 (200)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 200 (200)
.+.+.++......-...+...++|+++||+||
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 159 VRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred HHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99887777666555666777777778999886
No 2
>KOG0084|consensus
Probab=100.00 E-value=2e-38 Score=215.36 Aligned_cols=172 Identities=35% Similarity=0.527 Sum_probs=160.1
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
+-+-.+||+++|+.|+|||+|+.|+..+.|.+.|..|++..+ ..++..+++.+++++|||+|+++++.+...|++++++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 345579999999999999999999999999999999999555 5688899999999999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc-EEEecccCCCc
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHN 160 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~ 160 (200)
+|+|||+++.++|..+..|+..+.+... ...|.++|+||+|+.+.+.++..+++.++...+++ ++++||+++.|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-----~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYAS-----ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhcc-----CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 9999999999999999999999999884 66899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhccchhH
Q psy8700 161 VKELFAELLNLEKNRNISL 179 (200)
Q Consensus 161 i~~~~~~i~~~~~~~~~~~ 179 (200)
+.+.|..|...++++....
T Consensus 160 Ve~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 9999999999888776544
No 3
>KOG0092|consensus
Probab=100.00 E-value=7.9e-38 Score=211.68 Aligned_cols=171 Identities=35% Similarity=0.510 Sum_probs=157.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+||+++|+.++|||||+-|+..+.+.+...||++ .+....+.+++..+++.+|||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4579999999999999999999999999888889998 455678888899999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|||+++.+||..+..|...+.+.. .++.-+.+|+||+|+.+.+++...+...++...|..|+++||+++.|+++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~-----~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQA-----SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhC-----CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHH
Confidence 9999999999999999999999988 36677778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhHH
Q psy8700 164 LFAELLNLEKNRNISLQ 180 (200)
Q Consensus 164 ~~~~i~~~~~~~~~~~~ 180 (200)
+|..|.+.+..+.....
T Consensus 158 if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 158 IFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHHhccCcccccc
Confidence 99999999987765443
No 4
>KOG0094|consensus
Probab=100.00 E-value=2.5e-37 Score=209.37 Aligned_cols=168 Identities=34% Similarity=0.529 Sum_probs=156.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
+.+|++++|+.++||||||+|+..+.+..+|.+|++ ++...++.+.+.++.+++|||+||++++++.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 458999999999999999999999999999999999 5557788999999999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|||+++..+|.+...|++.+....+ ..+.-+++|+||.||.+.+++...+....+++.+..|.++||+.|.||..+
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~g----s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERG----SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccC----CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 9999999999999999999998885 345778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccch
Q psy8700 165 FAELLNLEKNRNI 177 (200)
Q Consensus 165 ~~~i~~~~~~~~~ 177 (200)
|..|...+.....
T Consensus 177 FrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 177 FRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHhccCccc
Confidence 9999998877654
No 5
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.2e-36 Score=212.51 Aligned_cols=161 Identities=30% Similarity=0.508 Sum_probs=139.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
.+||+++|+.|||||||+.++..+.+.+.+.|+.+..+...+.+++..+.+++|||+|+++++.++..+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 58999999999999999999999999888999988766666667888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhC-CcEEE
Q psy8700 87 SCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWG-CHFME 152 (200)
Q Consensus 87 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~ 152 (200)
|++++.+++.+.. |...+... .++.|++||+||.|+.+.. .+...+...+++..+ ++|++
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~------~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHH------CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh------CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999975 55545432 2568999999999996542 244556777888888 48999
Q ss_pred ecccCCCcHHHHHHHHHHHHh
Q psy8700 153 TSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~ 173 (200)
+||++|.|++++|+++.+.+.
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998774
No 6
>KOG0078|consensus
Probab=100.00 E-value=4.1e-36 Score=206.92 Aligned_cols=174 Identities=35% Similarity=0.528 Sum_probs=161.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
-+..+||+++|++|||||+++.++..+.+...+..+++-.+ -.++.+++..+.+++|||+|+++++.+...|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 45679999999999999999999999999999999999544 57888999999999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|||+++..+|.++..|+..+.+... ...|.++|+||+|+..++++.....+.++.++|+.|+++||+.|.||.
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~-----~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHAS-----DDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCC-----CCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 999999999999999999999999884 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhHHHh
Q psy8700 163 ELFAELLNLEKNRNISLQLE 182 (200)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~ 182 (200)
++|-.+.+.+..+...-+++
T Consensus 164 eaF~~La~~i~~k~~~~~~~ 183 (207)
T KOG0078|consen 164 EAFLSLARDILQKLEDAELE 183 (207)
T ss_pred HHHHHHHHHHHhhcchhhhc
Confidence 99999999998766655544
No 7
>KOG0394|consensus
Probab=100.00 E-value=2.4e-36 Score=202.70 Aligned_cols=173 Identities=28% Similarity=0.418 Sum_probs=157.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+...+||+++|++|+|||||+|++...+|...|..+++ ++..+.+.+++..+.+++|||+|++++.++...+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 57889999999999999999999999999999999999 66678999999999999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc--cccCHHHHHHHHHHhC-CcEEEecccCCC
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN--REVSAAEGEAEAKMWG-CHFMETSAKTNH 159 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~vSa~~~~ 159 (200)
++|+|++++.+++.+..|...+...... ..+...|+||++||+|+.+. +.++...++.++...| +|||++||+...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~-~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASP-QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCC-CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999998887752 34677899999999999763 6788888999998876 699999999999
Q ss_pred cHHHHHHHHHHHHhccch
Q psy8700 160 NVKELFAELLNLEKNRNI 177 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~ 177 (200)
|+.++|+.+.+...+...
T Consensus 165 NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANED 182 (210)
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 999999999998876654
No 8
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=210.61 Aligned_cols=166 Identities=43% Similarity=0.730 Sum_probs=147.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++..+.+...+.++.+..+.....+++..+.+.+|||||++++..++..++..++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56799999999999999999999999888888888887777777788888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++++++..+..|+..+.+... ....|+++|+||.|+.+...+...+...+....+.+++++||++|.|+.++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~----~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKD----KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 9999999999999999988876642 357899999999999776666666667777777889999999999999999
Q ss_pred HHHHHHHHhc
Q psy8700 165 FAELLNLEKN 174 (200)
Q Consensus 165 ~~~i~~~~~~ 174 (200)
|+++.+.+..
T Consensus 159 ~~~l~~~l~~ 168 (189)
T PTZ00369 159 FYELVREIRK 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=7.6e-36 Score=210.89 Aligned_cols=167 Identities=26% Similarity=0.363 Sum_probs=147.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|..|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999999888777777765444 345667888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|||++++.++..+..|+..+.... +..|++||+||.|+.+.+.+...+...+++..+++|+++||++|.||++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~------~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA------PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 9999999999999999998886543 5689999999999988777788888899998999999999999999999
Q ss_pred HHHHHHHHHhccch
Q psy8700 164 LFAELLNLEKNRNI 177 (200)
Q Consensus 164 ~~~~i~~~~~~~~~ 177 (200)
+|+++.+.+..++.
T Consensus 158 ~F~~l~~~i~~~~~ 171 (189)
T cd04121 158 SFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999997765444
No 10
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-35 Score=213.60 Aligned_cols=164 Identities=24% Similarity=0.376 Sum_probs=145.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+++|++|||||||++++..+.+...+.|+.+..+...+.+++..+.+++|||+|++.+..+...++.+++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 56899999999999999999999999988999998877766777888999999999999999999999999999999999
Q ss_pred eeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEE
Q psy8700 86 YSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFM 151 (200)
Q Consensus 86 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 151 (200)
||++++.++..+ ..|+..+.... +..|+++|+||+|+.+ ...+...++..+++..++ .|+
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~------~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC------PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 999999999984 77877776644 4579999999999864 245677789999999998 699
Q ss_pred EecccCCC-cHHHHHHHHHHHHhcc
Q psy8700 152 ETSAKTNH-NVKELFAELLNLEKNR 175 (200)
Q Consensus 152 ~vSa~~~~-~i~~~~~~i~~~~~~~ 175 (200)
+|||++|. |++++|..+...+.++
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999997 8999999999887654
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.2e-35 Score=209.56 Aligned_cols=162 Identities=32% Similarity=0.484 Sum_probs=143.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
++|+++|..|||||||++++..+.+...+.++.+ +.....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999999888888887 444556777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccCCCcHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~~~ 165 (200)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+++...+...+++.. ++.|++|||++|.||.++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~-----~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYA-----SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 9999999999999988776554 366899999999999877777777777777764 7899999999999999999
Q ss_pred HHHHHHHhc
Q psy8700 166 AELLNLEKN 174 (200)
Q Consensus 166 ~~i~~~~~~ 174 (200)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (202)
T cd04120 156 LKLVDDILK 164 (202)
T ss_pred HHHHHHHHH
Confidence 999987754
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.2e-35 Score=206.13 Aligned_cols=163 Identities=26% Similarity=0.419 Sum_probs=145.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
++..+||+++|++|+|||||++++..+.+...+.|+....+...+.+++..+.+++|||+|++.+..+...+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45679999999999999999999999999888999998777777778888999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-c
Q psy8700 84 LVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-H 149 (200)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~ 149 (200)
+|||++++.++..+ ..|...+.... +..|++||+||.|+.+ ...+...++..+++..++ +
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~------~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC------PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 99999999999997 67777776643 5689999999999864 235777889999999996 8
Q ss_pred EEEecccCCCc-HHHHHHHHHHHH
Q psy8700 150 FMETSAKTNHN-VKELFAELLNLE 172 (200)
Q Consensus 150 ~~~vSa~~~~~-i~~~~~~i~~~~ 172 (200)
|++|||++|.| |+++|+.+.+.+
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHH
Confidence 99999999998 999999998854
No 13
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.8e-35 Score=204.69 Aligned_cols=164 Identities=36% Similarity=0.630 Sum_probs=147.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
.+||+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+++|||||++.+..++..++..+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999998888888888777767777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+.+... .++.|+++|+||.|+.+...+...+...+++..+++|+++||++|.||+++|+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~----~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRL----TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcC----CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999988887776542 35689999999999987777777788888888899999999999999999999
Q ss_pred HHHHHHhc
Q psy8700 167 ELLNLEKN 174 (200)
Q Consensus 167 ~i~~~~~~ 174 (200)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (172)
T cd04141 158 GLVREIRR 165 (172)
T ss_pred HHHHHHHH
Confidence 99987754
No 14
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.2e-35 Score=207.00 Aligned_cols=180 Identities=30% Similarity=0.520 Sum_probs=147.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.++.+...+.++....+...+... +..+.+.+|||||++++..++..++.++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999988888888776655455554 67789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----ccCHHHHHHHHHHhCC-cEEEecccCCCc
Q psy8700 87 SCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR----EVSAAEGEAEAKMWGC-HFMETSAKTNHN 160 (200)
Q Consensus 87 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~-~~~~vSa~~~~~ 160 (200)
|++++++++.+.. |...+... .++.|+++|+||.|+.... .....+...++...++ +++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF------CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh------CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999875 44444332 2568999999999986532 3445667777788888 999999999999
Q ss_pred HHHHHHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700 161 VKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200 (200)
Q Consensus 161 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 200 (200)
+.++|+.+.+.+....... ...+++++.+|++|
T Consensus 155 v~~~f~~l~~~~~~~~~~~-------~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKA-------IFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhh-------hhccCCCCcccccC
Confidence 9999999999885444322 55566667888886
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=8.4e-35 Score=203.45 Aligned_cols=159 Identities=30% Similarity=0.554 Sum_probs=141.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|.+|+|||||+.++..+.+...+.|+.+..+...+..++..+.+++|||+|++++..+...++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999998889999987777667778888999999999999999999999999999999999
Q ss_pred CCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----------ccCHHHHHHHHHHhCC-cEEEecc
Q psy8700 88 CTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETENR----------EVSAAEGEAEAKMWGC-HFMETSA 155 (200)
Q Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~vSa 155 (200)
++++.++..+ ..|+..+.... ++.|++||+||.|+.+.. .+...+...+++..++ +|++|||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~------~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA------PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 9999999998 57887776543 468999999999996543 3667788888888887 6999999
Q ss_pred cCCCcHHHHHHHHHHHH
Q psy8700 156 KTNHNVKELFAELLNLE 172 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~ 172 (200)
++|.||+++|+.+.+.+
T Consensus 156 k~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 156 KTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CcccCHHHHHHHHHHHH
Confidence 99999999999999865
No 16
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.9e-35 Score=206.10 Aligned_cols=186 Identities=31% Similarity=0.434 Sum_probs=156.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..++.++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999988776777776444 455667777889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|+..+..... ...|+++++||.|+.+...........++...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~-----~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYAR-----ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999888876552 4589999999999987776667777777777888999999999999999999
Q ss_pred HHHHHHhccchhHHHhhhcccccccccCCcccc
Q psy8700 167 ELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSV 199 (200)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 199 (200)
++.+.+..+....++ .....+++..++.+|++
T Consensus 156 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 156 LLVKLIIKRLEEQEL-SPKNIKQQFKKKNNCFI 187 (188)
T ss_pred HHHHHHHHHhhcCcC-CccccccccccccCccc
Confidence 999998765543333 33666677777788876
No 17
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.4e-34 Score=206.90 Aligned_cols=167 Identities=32% Similarity=0.473 Sum_probs=144.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999888777788876443 345566777789999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|+++++++..+..|+..+.... ...|++||+||+|+.........+...+....+.+++++||++|.||.+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~------~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC------DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHH
Confidence 9999999999999999988876544 5689999999999987666666777777777889999999999999999
Q ss_pred HHHHHHHHHhccch
Q psy8700 164 LFAELLNLEKNRNI 177 (200)
Q Consensus 164 ~~~~i~~~~~~~~~ 177 (200)
+|++|.+.+...+.
T Consensus 158 lf~~l~~~~~~~~~ 171 (199)
T cd04110 158 MFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998865543
No 18
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-34 Score=205.57 Aligned_cols=173 Identities=27% Similarity=0.387 Sum_probs=146.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..+ +..+.+.+|||||++.+..++..++.+++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 6899999999999999999999988888888887444 4455666 7789999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKEL 164 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~~ 164 (200)
||+++++++..+..|+..+....... .....|++||+||+|+.+.......+...+++..+ ..++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLP-NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhccc-CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999999988877643211 13568999999999997666667777788888888 58999999999999999
Q ss_pred HHHHHHHHhccchhHHH
Q psy8700 165 FAELLNLEKNRNISLQL 181 (200)
Q Consensus 165 ~~~i~~~~~~~~~~~~~ 181 (200)
|+++.+.+.........
T Consensus 160 f~~l~~~l~~~~~~~~~ 176 (201)
T cd04107 160 MRFLVKNILANDKNLQQ 176 (201)
T ss_pred HHHHHHHHHHhchhhHh
Confidence 99999988765544433
No 19
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.6e-34 Score=200.52 Aligned_cols=162 Identities=50% Similarity=0.861 Sum_probs=143.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
++||+++|++|||||||++++..+.+...+.++....+...+..++..+.+++|||||++++..++..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999988888888887777777778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.......+...+.+.++.+++++||++|.|+.++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKD----TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999988877652 46789999999999977666666666667777788999999999999999999
Q ss_pred HHHHHH
Q psy8700 167 ELLNLE 172 (200)
Q Consensus 167 ~i~~~~ 172 (200)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998754
No 20
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.8e-34 Score=207.90 Aligned_cols=165 Identities=23% Similarity=0.420 Sum_probs=141.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||++++..+.+...|.|+....+...+.+++..+.+.+|||+|++.|..++..++.++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999998899999987777777788889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEEEec
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFMETS 154 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vS 154 (200)
++++++++.+..+|....... .+..|++||+||+|+.+. ..+...+...+++..++ +|++||
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~-----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~S 156 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF-----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECS 156 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcC
Confidence 999999999966564433333 367899999999999652 12455678888888886 899999
Q ss_pred ccCCCc-HHHHHHHHHHHHhccch
Q psy8700 155 AKTNHN-VKELFAELLNLEKNRNI 177 (200)
Q Consensus 155 a~~~~~-i~~~~~~i~~~~~~~~~ 177 (200)
|+++.+ |+++|+.+......+..
T Consensus 157 Ak~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 157 SRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCCcCHHHHHHHHHHHHHhccC
Confidence 999885 99999999997765443
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.1e-34 Score=207.50 Aligned_cols=182 Identities=32% Similarity=0.417 Sum_probs=146.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|.+|||||||++++..+.+.. +.++.+..+... ....+.+.+|||+|++.+..+...++.+++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999988854 456665433211 1245789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-------------------ccccCHHHHHHHHHHhC-
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-------------------NREVSAAEGEAEAKMWG- 147 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~- 147 (200)
++++.++..+..||..+.+.. .+..|++||+||+|+.+ .+++...+...+++..+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~-----~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTA-----NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 999999999999998877643 35689999999999975 45666777888887765
Q ss_pred -------------CcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhhh-----cccccccccCCccc
Q psy8700 148 -------------CHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK-----GQLKGTRKLKEKCS 198 (200)
Q Consensus 148 -------------~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~c~ 198 (200)
++|++|||++|.||+++|..+.+.+.+-......++. ..+.+.++++.+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence 6899999999999999999999887654444433333 36677777766553
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.1e-34 Score=208.27 Aligned_cols=166 Identities=33% Similarity=0.394 Sum_probs=143.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCC-cEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNK-NICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+||+++|++|||||||+++|.+..+...+.++.+ +.+...+.+++ ..+.+++|||+|++.+..+...+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888888887 44445555544 568999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
||+++++++..+..|...+...... .....|+++|+||+|+.+.+.....+...+++..+++++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~--~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf 158 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKS--SETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLF 158 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccc--cCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999888876531 12456899999999998777777777788888888999999999999999999
Q ss_pred HHHHHHHhcc
Q psy8700 166 AELLNLEKNR 175 (200)
Q Consensus 166 ~~i~~~~~~~ 175 (200)
+++.+.+...
T Consensus 159 ~~l~~~l~~~ 168 (215)
T cd04109 159 QQLAAELLGV 168 (215)
T ss_pred HHHHHHHHhc
Confidence 9999988653
No 23
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-34 Score=205.32 Aligned_cols=171 Identities=34% Similarity=0.549 Sum_probs=144.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+||+++|++|||||||++++..+.+.. .+.++.+..+ ...+.+++..+.+++|||||++++......++..+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888743 5666666444 34566778889999999999999999899999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|+++++++..+..|+..+.... ....|+++|+||+|+...+.....+...+....+++|+++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-----QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999888887755 2468999999999997666666667777777888999999999999999999
Q ss_pred HHHHHHHhccchhHHHhh
Q psy8700 166 AELLNLEKNRNISLQLEK 183 (200)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~ 183 (200)
++|.+.+.........+.
T Consensus 156 ~~l~~~~~~~~~~~~~~~ 173 (191)
T cd04112 156 TAVAKELKHRKYEQPDEG 173 (191)
T ss_pred HHHHHHHHHhccccCCCC
Confidence 999999987765443333
No 24
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.1e-34 Score=199.32 Aligned_cols=162 Identities=44% Similarity=0.836 Sum_probs=143.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
++||+++|.+|||||||++++..+.+...+.++....+......++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 57999999999999999999999888778888888777777777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+..... ..+.|+++|+||+|+.+.......+...+++..+++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKD----TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999988877552 46789999999999987666666666677777889999999999999999999
Q ss_pred HHHHHH
Q psy8700 167 ELLNLE 172 (200)
Q Consensus 167 ~i~~~~ 172 (200)
++.+.+
T Consensus 157 ~l~~~l 162 (164)
T cd04175 157 DLVRQI 162 (164)
T ss_pred HHHHHh
Confidence 998765
No 25
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.5e-34 Score=204.08 Aligned_cols=174 Identities=32% Similarity=0.494 Sum_probs=142.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|++|||||||++++..+.+...+.|+....+...+..++..+.+++|||+|++.+..++..++..++++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999888888888766666666777789999999999999999999999999999999999
Q ss_pred CChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc------------cCHHHHHHHHHHhC-CcEEEec
Q psy8700 89 TSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMWG-CHFMETS 154 (200)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~vS 154 (200)
+++++++.+.. |+..+.... +..|+++|+||+|+.+... ....+...++...+ ++|+++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~------~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 155 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHC------PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS 155 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999874 655555432 5689999999999976432 23344555666666 6899999
Q ss_pred ccCCCcHHHHHHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700 155 AKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 200 (200)
|++|.|++++|+++.+.+. ..+...+..++|+||
T Consensus 156 Ak~~~~v~e~f~~l~~~~~------------~~~~~~~~~~~~~~~ 189 (189)
T cd04134 156 AKLNRGVNEAFTEAARVAL------------NVRPPHPHSSACTIA 189 (189)
T ss_pred CCcCCCHHHHHHHHHHHHh------------cccccCcCCCcceeC
Confidence 9999999999999998764 223356667788876
No 26
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.9e-34 Score=202.37 Aligned_cols=160 Identities=26% Similarity=0.409 Sum_probs=141.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
.+||+++|++|||||||++++..+.+...+.|+....+...+.+++..+.+++|||+|++.+..+...+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999888999987766667778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEEE
Q psy8700 87 SCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFME 152 (200)
Q Consensus 87 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 152 (200)
|+++++++..+ ..|...+.... +..|+++|+||.|+.+ ...+...++..+++..++ +|++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~------~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC------PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC------CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999996 67877776644 5689999999999964 234677788999999997 8999
Q ss_pred ecccCCCc-HHHHHHHHHHHH
Q psy8700 153 TSAKTNHN-VKELFAELLNLE 172 (200)
Q Consensus 153 vSa~~~~~-i~~~~~~i~~~~ 172 (200)
+||++|.| |+++|..+.+..
T Consensus 155 ~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CccCcCCcCHHHHHHHHHHHH
Confidence 99999995 999999999854
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.7e-34 Score=198.36 Aligned_cols=162 Identities=30% Similarity=0.405 Sum_probs=142.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988877777776444 34566788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++++++.+..|+..+.... .+..|+++|+||+|+.+.......+...+++..+++++++||++|.|+.++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-----NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999998876654 3568999999999998877777777888888888999999999999999999
Q ss_pred HHHHHHHh
Q psy8700 166 AELLNLEK 173 (200)
Q Consensus 166 ~~i~~~~~ 173 (200)
.++.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T cd04122 157 LETAKKIY 164 (166)
T ss_pred HHHHHHHh
Confidence 99988764
No 28
>KOG0079|consensus
Probab=100.00 E-value=2.2e-35 Score=191.30 Aligned_cols=165 Identities=35% Similarity=0.538 Sum_probs=152.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
++.++.+++|++|+|||+|+.++..+.++..|..+++..+. .++.+++..+++++|||+|+++++.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 34578899999999999999999999999999999996664 68888999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|+++.++|.+...|++.+.... +..|-++|+||.|.++.+.+...++..++...|+.+|++|++.+.|+..
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~nc------dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNC------DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEA 159 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcC------ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence 9999999999999999999998866 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8700 164 LFAELLNLEKNR 175 (200)
Q Consensus 164 ~~~~i~~~~~~~ 175 (200)
+|..|.+.....
T Consensus 160 mF~cit~qvl~~ 171 (198)
T KOG0079|consen 160 MFHCITKQVLQA 171 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 29
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.4e-33 Score=195.97 Aligned_cols=162 Identities=48% Similarity=0.829 Sum_probs=143.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||++++.+..+...+.++....+......++..+.+++|||||++++..++..++..++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998888778888877777777778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
+++++++..+..|+..+.+... ..+.|+++|+||+|+.........+...+.+..+.+++++||++|.|++++|++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~----~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKD----RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHH
Confidence 9999999999999888877653 356899999999999776666666667777778899999999999999999999
Q ss_pred HHHHHh
Q psy8700 168 LLNLEK 173 (200)
Q Consensus 168 i~~~~~ 173 (200)
+.+.+.
T Consensus 157 l~~~~~ 162 (164)
T smart00173 157 LVREIR 162 (164)
T ss_pred HHHHHh
Confidence 998664
No 30
>KOG0080|consensus
Probab=100.00 E-value=1.5e-34 Score=189.85 Aligned_cols=169 Identities=33% Similarity=0.453 Sum_probs=155.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+||+++|.+|+|||||+.++..+.+.+....+++..+ .+.+.+++..+++.+|||+|+++++.+.+.|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4569999999999999999999999999888887888666 467889999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++.+++|..+..|+.++..+.. -+++-.++|+||+|..+.+.++..+...+++.+++-|+++||++.+|+..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Yst----n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYST----NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcC----CccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 99999999999999999999998884 56777789999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccch
Q psy8700 164 LFAELLNLEKNRNI 177 (200)
Q Consensus 164 ~~~~i~~~~~~~~~ 177 (200)
+|+.+.+.+.+...
T Consensus 165 ~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 165 CFEELVEKIIETPS 178 (209)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999998876554
No 31
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.8e-33 Score=195.65 Aligned_cols=162 Identities=84% Similarity=1.267 Sum_probs=142.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||+++++++.+...+.++.+..+......+...+.+.+|||||++++..+...++..++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988888888887777766777778899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
+++++++..+..|+..+.+.... ..++.|+++|+||+|+.+..+....+...++...+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGN--NIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999999888776531 1367899999999999776666666677777778889999999999999999999
Q ss_pred HHHH
Q psy8700 168 LLNL 171 (200)
Q Consensus 168 i~~~ 171 (200)
|.++
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9864
No 32
>KOG0098|consensus
Probab=100.00 E-value=3.2e-34 Score=192.86 Aligned_cols=171 Identities=35% Similarity=0.442 Sum_probs=156.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
....+|++++|+.|+|||+|+.+++...+.+.+..|++-.+ ...+.+++..+++++|||+|++.++++...|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999888888888544 56778899999999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|||++.+++|..+..|+..+.... .++.-+++++||+||...++++..+...+++..|+.++++||+++.|+.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~-----~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VE 157 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHS-----NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVE 157 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhc-----CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHH
Confidence 99999999999999999999998876 3778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhH
Q psy8700 163 ELFAELLNLEKNRNISL 179 (200)
Q Consensus 163 ~~~~~i~~~~~~~~~~~ 179 (200)
|+|..+...+....+..
T Consensus 158 EaF~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 158 EAFINTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999888876555444
No 33
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.8e-33 Score=195.30 Aligned_cols=162 Identities=50% Similarity=0.851 Sum_probs=141.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
++||+++|.+|+|||||++++..+.+.+.+.++....+...+.+++..+.+++|||||++++..++..++.++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999988888888877666777778888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++.++..|+..+.+... ..+.|+++|+||+|+.........+...+....+.+++++||++|.|+.++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKG----YEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999988887652 36789999999999976555555556666667788999999999999999999
Q ss_pred HHHHHH
Q psy8700 167 ELLNLE 172 (200)
Q Consensus 167 ~i~~~~ 172 (200)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998754
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.2e-33 Score=195.58 Aligned_cols=164 Identities=39% Similarity=0.557 Sum_probs=143.3
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++|||||++.+..+...++.++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999998888888887544 3456667777899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHA-----SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-----CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999888887654 356899999999999876666666677777788899999999999999999
Q ss_pred HHHHHHHHhc
Q psy8700 165 FAELLNLEKN 174 (200)
Q Consensus 165 ~~~i~~~~~~ 174 (200)
|+++.+.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 35
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.6e-33 Score=197.42 Aligned_cols=159 Identities=26% Similarity=0.482 Sum_probs=136.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|.+|+|||||++++..+.+...+.|+.+..+...+..++..+.+++|||+|++++..++..++.++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998889999987776666778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhC-CcEEEe
Q psy8700 88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWG-CHFMET 153 (200)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~v 153 (200)
++++++++.+.. |...+.... ++.|++||+||.|+.+. +.+...++..+++..+ +.|+++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~------~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 155 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC------PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC 155 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence 999999999975 555554432 46899999999998653 3345556666777776 589999
Q ss_pred cccCCCcHHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~ 172 (200)
||++|.|++++|+.++...
T Consensus 156 SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 156 SALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998743
No 36
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.4e-33 Score=193.49 Aligned_cols=161 Identities=39% Similarity=0.709 Sum_probs=140.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
++||+++|++|||||||+++++++.+...+.++.+..+.....+++..+.+.+|||+|++++..++..++.+++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999888888888887777777777888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+.+... ....|+++|+||+|+.+. .....+...+....+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~----~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKD----SDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccc-eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999988887652 356899999999999763 3345556666677788999999999999999999
Q ss_pred HHHHHH
Q psy8700 167 ELLNLE 172 (200)
Q Consensus 167 ~i~~~~ 172 (200)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998753
No 37
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.3e-33 Score=202.83 Aligned_cols=165 Identities=28% Similarity=0.424 Sum_probs=144.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+++|||+|++++..++..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 3568999999999999999999999888777777776443 566777888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.......+...+....+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-----DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-----CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999988877654 25689999999999987777777777788888889999999999999999
Q ss_pred HHHHHHHHHhc
Q psy8700 164 LFAELLNLEKN 174 (200)
Q Consensus 164 ~~~~i~~~~~~ 174 (200)
+|+++.+.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988755
No 38
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4.9e-33 Score=193.17 Aligned_cols=162 Identities=38% Similarity=0.627 Sum_probs=141.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
.+||+++|++|+|||||+++++++.+...+.++....+.....+++..+.+.+|||||++++..++..++..+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999888777778777666666667888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+..... ..+.|+++++||+|+.........+...+....+++++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKD----RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC----CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHH
Confidence 99999999999999988877652 45689999999999977666566666777777788999999999999999999
Q ss_pred HHHHHH
Q psy8700 167 ELLNLE 172 (200)
Q Consensus 167 ~i~~~~ 172 (200)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04145 158 DLVRVI 163 (164)
T ss_pred HHHHhh
Confidence 998754
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.6e-33 Score=194.13 Aligned_cols=161 Identities=29% Similarity=0.527 Sum_probs=139.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+++|||+|++.+..++..++++++++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998888888776433 345556677789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|...+.... ....|+++|+||+|+.+.......+...+....+++++++||++|.|+.++|+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-----WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-----CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999988876544 35689999999999987666666666677777888999999999999999999
Q ss_pred HHHHHHh
Q psy8700 167 ELLNLEK 173 (200)
Q Consensus 167 ~i~~~~~ 173 (200)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (165)
T cd01865 157 RLVDIIC 163 (165)
T ss_pred HHHHHHH
Confidence 9988653
No 40
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.2e-33 Score=193.63 Aligned_cols=159 Identities=32% Similarity=0.528 Sum_probs=140.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|+|||||++++..+.+.+.+.++.+..+ ...+..++..+.+++||++|++.+..+...++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999988877788877443 456667777889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|+..+.... ..+.|+++|+||.|+.+.+.+...+...+++..+++|+++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-----~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-----PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988777654 24689999999999988777777788888888889999999999999999999
Q ss_pred HHHHH
Q psy8700 167 ELLNL 171 (200)
Q Consensus 167 ~i~~~ 171 (200)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99864
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.5e-33 Score=196.87 Aligned_cols=165 Identities=27% Similarity=0.437 Sum_probs=141.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC----------CcEEEEEEEeCCCCCCChhhHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN----------KNICTLQITDTTGSHQFPAMQRL 74 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~~ 74 (200)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+... +..+.+.+|||||++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 468999999999999999999999998888888776433 2333322 45689999999999999999999
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
+++++|++++|+|+++++++..+..|+..+..... .++.|+++|+||+|+.+.......+...+++..+++++++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 158 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY----CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETS 158 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999888776542 35689999999999987777777778888888899999999
Q ss_pred ccCCCcHHHHHHHHHHHHhc
Q psy8700 155 AKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~ 174 (200)
|++|.|++++|+++.+.+.+
T Consensus 159 ak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 159 AATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987643
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=6.5e-33 Score=193.03 Aligned_cols=162 Identities=34% Similarity=0.531 Sum_probs=141.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888777777776443 34566677788999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|+++++++..+..|+..+.... .+..|+++++||+|+.........+...++...+++++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-----SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-----CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 99999999999999988887654 2568999999999998777677777788888889999999999999999999
Q ss_pred HHHHHHHh
Q psy8700 166 AELLNLEK 173 (200)
Q Consensus 166 ~~i~~~~~ 173 (200)
+.|.+.+.
T Consensus 157 ~~i~~~~~ 164 (166)
T cd01869 157 MTMAREIK 164 (166)
T ss_pred HHHHHHHH
Confidence 99998764
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.3e-33 Score=193.22 Aligned_cols=166 Identities=30% Similarity=0.482 Sum_probs=142.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998888888877544 446667788899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|...+.............|+++|+||+|+.+.......+...+....+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999988877653211235689999999999976555566666677777788999999999999999999
Q ss_pred HHHHHHh
Q psy8700 167 ELLNLEK 173 (200)
Q Consensus 167 ~i~~~~~ 173 (200)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 44
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.3e-32 Score=192.67 Aligned_cols=158 Identities=30% Similarity=0.540 Sum_probs=135.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||+.+++.+.+...+.|+....+......++..+.+++|||+|++.+..++..++.++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999988888888877766667778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEe
Q psy8700 88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMET 153 (200)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~v 153 (200)
+++++++..+.. |...+.... ++.|++||+||.|+.+.. .+...+...+++..+. +++++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999865 555554432 568999999999996432 3556677778888885 99999
Q ss_pred cccCCCcHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNL 171 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~ 171 (200)
||++|.|++++|+.+.+.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999998763
No 45
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.3e-32 Score=196.09 Aligned_cols=188 Identities=32% Similarity=0.493 Sum_probs=142.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh--------hhHhhcccc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP--------AMQRLSISK 78 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~ 78 (200)
+||+++|.+|||||||++++.++.+...+.|+.. ..+...+..++..+.+++|||||...+. ......+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988877888876 3344556678888999999999965432 123345789
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-HHhCCcEEEecccC
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKT 157 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~vSa~~ 157 (200)
+|++++|||++++++++.+..|+..+.+.... .....|++||+||+|+...+.....+...+. +..+++|+++||++
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~--~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 158 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA--GNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc--CCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence 99999999999999999999998888776410 1356899999999999766555555555543 35688999999999
Q ss_pred CCcHHHHHHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700 158 NHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 200 (200)
|.|++++|+.+...+..+......... .+..-..+.|++|
T Consensus 159 g~~v~~lf~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 198 (198)
T cd04142 159 NWHILLLFKELLISATTRGRSTHPALR---LQGALHRERCSIM 198 (198)
T ss_pred CCCHHHHHHHHHHHhhccCCCccHHHH---HHHHHhhcCcccC
Confidence 999999999999988766654332222 1112234568775
No 46
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.8e-32 Score=190.03 Aligned_cols=160 Identities=40% Similarity=0.653 Sum_probs=147.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
||+++|++|||||||+++|.++.+...+.++.+ +.....+..++..+.+++||++|++.+..+...++.++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999888998884 5556777888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
+++++++..+..|...+..... ...|++|++||.|+.+.+++...+...+++..+.+|+++||+++.|+.++|..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-----~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-----EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-----TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred cccccccccccccccccccccc-----ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999888873 46899999999999888888888899999999999999999999999999999
Q ss_pred HHHHHh
Q psy8700 168 LLNLEK 173 (200)
Q Consensus 168 i~~~~~ 173 (200)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 47
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.2e-32 Score=194.00 Aligned_cols=163 Identities=31% Similarity=0.416 Sum_probs=136.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+||+++|++|+|||||++++..+.+.. .+.++.+..+ ...+..++..+.+.+||++|++++..+...++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5777776544 34667788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc----cccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN----REVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
||++++.++..+..|+..+.... +..|+++|+||+|+... ......+...+....+++++++||++|.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE------EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC------CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999888887776543 46899999999998643 233344556666777889999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
+++|+++.+.+..+.
T Consensus 155 ~~l~~~i~~~~~~~~ 169 (193)
T cd04118 155 DELFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 48
>KOG0087|consensus
Probab=100.00 E-value=6.6e-33 Score=190.36 Aligned_cols=170 Identities=29% Similarity=0.413 Sum_probs=156.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+-.+||+++|++|+|||-|+.|+..+.+.....+|++..+ ...+.++++.++.+||||+|+++|+.+...|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 4469999999999999999999999999999999999554 557888999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|||++.+.+|+++..|+..+....+ +++++++|+||+||.+.+.+...+.+.++...+..++++||+++.|+.+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-----~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-----SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-----CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 99999999999999999999999884 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhH
Q psy8700 164 LFAELLNLEKNRNISL 179 (200)
Q Consensus 164 ~~~~i~~~~~~~~~~~ 179 (200)
+|+.++..+.......
T Consensus 167 aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 167 AFERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988876555444
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.6e-32 Score=197.53 Aligned_cols=164 Identities=25% Similarity=0.363 Sum_probs=139.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..++.+++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 46789999999999999999999999998888888887443 44555667778999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.. ...... .+.+..+++|+++||++|.|+.
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~------~~~piilvgNK~Dl~~~~-v~~~~~-~~~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC------CCCcEEEEEEchhhhhcc-CCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence 99999999999999999988887643 568999999999986432 233333 5566678899999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|+++.+.+.+.
T Consensus 162 ~~f~~l~~~~~~~ 174 (219)
T PLN03071 162 KPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988644
No 50
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=5.3e-32 Score=188.80 Aligned_cols=162 Identities=46% Similarity=0.789 Sum_probs=142.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
++||+++|++|||||||++++.++.+...+.++.+..+......++..+.+++|||||++++..++..++..++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47999999999999999999999888777888887666666777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF 165 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~~~ 165 (200)
|+++++++.....|...+.+... ..+.|+++++||.|+.........+...+.+.++ ++++++||+++.|+.++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~----~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKD----SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC----CCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence 99999999999998888877552 4678999999999997766666666666667777 699999999999999999
Q ss_pred HHHHHHH
Q psy8700 166 AELLNLE 172 (200)
Q Consensus 166 ~~i~~~~ 172 (200)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998755
No 51
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.8e-32 Score=188.98 Aligned_cols=161 Identities=33% Similarity=0.464 Sum_probs=139.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+..+..+...++.+++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999888777777776433 45666777778999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+..... ...|+++|+||.|+...+.....+...+....+++++++||++|.|+.++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHAD-----SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999999888777652 458999999999998766666667777777778899999999999999999
Q ss_pred HHHHHHH
Q psy8700 166 AELLNLE 172 (200)
Q Consensus 166 ~~i~~~~ 172 (200)
+++.+.+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 52
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=4e-32 Score=189.57 Aligned_cols=162 Identities=27% Similarity=0.348 Sum_probs=137.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
||+++|++|||||||+++++.+.+...|.|+.+..+ ...+..++..+.+++|||||++.+..+...+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 899999999999999999999999888989887554 3556677888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc--CHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV--SAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+++++++..+..|+..+..... ....|+++|+||+|+.+..+. ...+...+....+.+++++||++|.|+.++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~----~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKEND----PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcC----CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999998888766542 345789999999998654332 3444556666778899999999999999999
Q ss_pred HHHHHHHhc
Q psy8700 166 AELLNLEKN 174 (200)
Q Consensus 166 ~~i~~~~~~ 174 (200)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999987743
No 53
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=4.1e-32 Score=191.32 Aligned_cols=163 Identities=25% Similarity=0.407 Sum_probs=136.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|+.|||||||++++..+.+...+.|+.+..+ ...+..++..+.+++|||+|++.+..++..++.++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888899887444 456777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-----cccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-----REVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
|++++.++..+..|+..+.... ....| ++|+||+|+... ......+...+++..+++++++||++|.|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-----~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-----KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-----CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999988777654 23456 678999998531 111223455667777889999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
+++|+++.+.+.+-.
T Consensus 155 ~~lf~~l~~~l~~~~ 169 (182)
T cd04128 155 QKIFKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876533
No 54
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.8e-32 Score=189.01 Aligned_cols=158 Identities=35% Similarity=0.489 Sum_probs=136.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC--CcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN--KNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+... +..+.+++|||||++.+..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999888777777776444 3444455 677899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++++++..+..|...+.... .+.|+++|+||+|+..+......+...+.+..+++++++||++|.|++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC------GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTEL 154 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999888776533 56899999999999877766667777788888999999999999999999
Q ss_pred HHHHHHH
Q psy8700 165 FAELLNL 171 (200)
Q Consensus 165 ~~~i~~~ 171 (200)
|++|...
T Consensus 155 ~~~l~~~ 161 (162)
T cd04106 155 FEYLAEK 161 (162)
T ss_pred HHHHHHh
Confidence 9998753
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.6e-32 Score=195.27 Aligned_cols=166 Identities=34% Similarity=0.475 Sum_probs=142.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEe-CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISC-NKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
.+||+++|++|||||||++++.+..+...+.++.+. .+...+.. ++..+.+++|||+|++.+..+...++.++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999998887777777653 33344444 4667899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|||++++.++..+..|+..+..... ....|++||+||.|+.+.......+...+++..+++++++||++|.|+.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~----~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQ----PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999988876652 345788999999999887777777778888888899999999999999999
Q ss_pred HHHHHHHHhccc
Q psy8700 165 FAELLNLEKNRN 176 (200)
Q Consensus 165 ~~~i~~~~~~~~ 176 (200)
|++|.+.+.++.
T Consensus 158 f~~l~~~~~~~~ 169 (211)
T cd04111 158 FELLTQEIYERI 169 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999876553
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=4.4e-32 Score=187.90 Aligned_cols=159 Identities=34% Similarity=0.478 Sum_probs=138.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++.+......++.++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777666665333 345566777789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+.... .++.|+++++||+|+.........+...+....+++++++||+++.|+.++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-----SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999988776554 36789999999999987777777778888888889999999999999999999
Q ss_pred HHHHH
Q psy8700 167 ELLNL 171 (200)
Q Consensus 167 ~i~~~ 171 (200)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd04113 156 KCARS 160 (161)
T ss_pred HHHHh
Confidence 99874
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=5.9e-32 Score=188.13 Aligned_cols=159 Identities=25% Similarity=0.395 Sum_probs=134.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||+++++.+.+...+.++.+..+ ......++..+.+.+|||+|++.+..+...++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998888777888776433 345555777799999999999999988899999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|...+.... .+.|+++|+||+|+.+.. .. .....+....+++++++||++|.|+.++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~------~~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC------GNIPIVLCGNKVDIKDRK-VK-AKQITFHRKKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC------CCCcEEEEEEchhccccc-CC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHH
Confidence 9999999999999988887765 369999999999997433 22 233445566678999999999999999999
Q ss_pred HHHHHHhc
Q psy8700 167 ELLNLEKN 174 (200)
Q Consensus 167 ~i~~~~~~ 174 (200)
++.+.+.+
T Consensus 153 ~l~~~~~~ 160 (166)
T cd00877 153 WLARKLLG 160 (166)
T ss_pred HHHHHHHh
Confidence 99987753
No 58
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=9.3e-32 Score=187.57 Aligned_cols=163 Identities=37% Similarity=0.502 Sum_probs=140.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++....+.+||+||++.+..+...+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999887776666655333 34556677778999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+.... .+..|+++|+||+|+.+.......+...+....+++++++||+.+.|++++|
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-----NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999998887764 3668999999999998766666667777777888999999999999999999
Q ss_pred HHHHHHHhc
Q psy8700 166 AELLNLEKN 174 (200)
Q Consensus 166 ~~i~~~~~~ 174 (200)
+++.+.+.+
T Consensus 159 ~~~~~~~~~ 167 (168)
T cd01866 159 INTAKEIYE 167 (168)
T ss_pred HHHHHHHHh
Confidence 999987643
No 59
>KOG0093|consensus
Probab=100.00 E-value=1.1e-32 Score=178.62 Aligned_cols=162 Identities=28% Similarity=0.512 Sum_probs=149.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+|++++|...+|||||+.++.++.+...+.++.+-.++ +++.-..+.+++++|||+|+++|+.+...+++.++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 479999999999999999999999999999999885553 5666566779999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|+++.+++..++.|...+..... .+.|+++|+||+|+.+++.++......++...|..||++||+.+.|++.+|
T Consensus 101 yDitNeeSf~svqdw~tqIktysw-----~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSW-----DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeec-----cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 999999999999999999988774 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy8700 166 AELLNLEK 173 (200)
Q Consensus 166 ~~i~~~~~ 173 (200)
+.+...+-
T Consensus 176 e~lv~~Ic 183 (193)
T KOG0093|consen 176 ERLVDIIC 183 (193)
T ss_pred HHHHHHHH
Confidence 99998763
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1e-31 Score=186.15 Aligned_cols=159 Identities=26% Similarity=0.390 Sum_probs=132.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++..+.+.+.+.++.. ..+.....+++..+.+.+|||+|++.+..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888777666654 333445666778899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+.... ++.|+++|+||+|+.... ..+...+....+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~------~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR------PEIPCIVVANKIDLDPSV---TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC------CCCcEEEEEECccCchhH---HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999998888886543 568999999999984321 2233445555678999999999999999999
Q ss_pred HHHHHHhcc
Q psy8700 167 ELLNLEKNR 175 (200)
Q Consensus 167 ~i~~~~~~~ 175 (200)
.+.+.+.++
T Consensus 152 ~l~~~~~~~ 160 (161)
T cd04124 152 DAIKLAVSY 160 (161)
T ss_pred HHHHHHHhc
Confidence 999877654
No 61
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.9e-32 Score=187.41 Aligned_cols=161 Identities=30% Similarity=0.439 Sum_probs=137.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++|||||++.+......++.++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777776665333 3456667777899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKE 163 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~ 163 (200)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.++........+++..+. .++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-----ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 999999999999999988887654 35689999999999987776666677777777776 789999999999999
Q ss_pred HHHHHHHH
Q psy8700 164 LFAELLNL 171 (200)
Q Consensus 164 ~~~~i~~~ 171 (200)
+|+++.+.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999864
No 62
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=6.9e-32 Score=189.24 Aligned_cols=158 Identities=30% Similarity=0.551 Sum_probs=135.3
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT 89 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 89 (200)
|+++|++|||||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..++..+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999998888888877776666777888899999999999999999999999999999999999
Q ss_pred ChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEecc
Q psy8700 90 SRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMETSA 155 (200)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~vSa 155 (200)
++++++.+.. |+..+.... ++.|+++|+||+|+.... .+...+...+++..+. +++++||
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC------PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC------CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999865 665555433 568999999999986532 2455666778888886 9999999
Q ss_pred cCCCcHHHHHHHHHHHHh
Q psy8700 156 KTNHNVKELFAELLNLEK 173 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~ 173 (200)
++|.|++++|+.+.+.+.
T Consensus 155 ~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 155 LTQEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998763
No 63
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2.6e-31 Score=184.45 Aligned_cols=162 Identities=39% Similarity=0.653 Sum_probs=142.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||++++....+...+.++....+......++..+.+.+||+||+..+......+++.++++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998888788888777777777778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
++++.++.....|+..+..... ..+.|+++|+||+|+.+.......+...+...++++++++||++|.|+.++|++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~----~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKD----DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence 9999999999999988888753 456999999999999775445555666677778899999999999999999999
Q ss_pred HHHHHh
Q psy8700 168 LLNLEK 173 (200)
Q Consensus 168 i~~~~~ 173 (200)
+.+.+.
T Consensus 157 l~~~~~ 162 (164)
T cd04139 157 LVREIR 162 (164)
T ss_pred HHHHHH
Confidence 998764
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.6e-31 Score=186.70 Aligned_cols=162 Identities=29% Similarity=0.417 Sum_probs=139.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCCh-hhHhhccccCCEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFP-AMQRLSISKGHAFIL 84 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~ 84 (200)
.+||+++|++|||||||++++..+.+...+.++.+.. ....+..++..+.+.+||++|++++. .+...+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999988877777776533 34566678888999999999998876 578889999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC---CCcH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNV 161 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~~i 161 (200)
|+|++++.++..+..|...+..... ..+.|+++|+||+|+.+.++....+...++...+++|+++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSL----PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcC----CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999988877652 36789999999999988777777777788888889999999999 8899
Q ss_pred HHHHHHHHHHH
Q psy8700 162 KELFAELLNLE 172 (200)
Q Consensus 162 ~~~~~~i~~~~ 172 (200)
.++|..+.+.+
T Consensus 158 ~~~f~~l~~~~ 168 (170)
T cd04115 158 EAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 65
>KOG0088|consensus
Probab=100.00 E-value=4.9e-33 Score=182.46 Aligned_cols=168 Identities=33% Similarity=0.501 Sum_probs=152.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+.-.+||+++|..-+|||||+-|++.++|.....++.. .+....+.+++....+.+|||+|+++|..+.+.|++..+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 34469999999999999999999999999777777776 33356677788889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|||++|+++|+.+..|...+....+ ..+..+||+||+|+.+++.+..+++..++..-|..|+++||+++.||.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-----nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-----NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-----CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 999999999999999999999998885 778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|+.+...+.++.
T Consensus 165 elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 165 ELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998886655
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.1e-31 Score=186.11 Aligned_cols=166 Identities=30% Similarity=0.429 Sum_probs=139.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
++..+||+++|++|||||||++++..+.+.+.+.++.+..+ ...+..++..+.+++||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 46779999999999999999999999888777777766433 45666788889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNV 161 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i 161 (200)
++|||+++++++..+..|...+...... ......|+++|+||.|+. .......+...++...+. +++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADV-KEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhccc-ccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 9999999999999999988877665421 113568999999999986 444556667777777774 8999999999999
Q ss_pred HHHHHHHHHH
Q psy8700 162 KELFAELLNL 171 (200)
Q Consensus 162 ~~~~~~i~~~ 171 (200)
.++|+++.+.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 67
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.6e-31 Score=185.86 Aligned_cols=162 Identities=39% Similarity=0.602 Sum_probs=136.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCEEEEEee
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~d 87 (200)
||+++|++|||||||+++++.+.+...+.++....+......++..+.+++||+||+.. .......++.++|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999888777777877666666667788888999999999885 34456678899999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC-cHHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFA 166 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~~~~ 166 (200)
++++.+++.+..|+..+..... ...+.|+++|+||+|+.....+...+...+++..+++|+++||++|. |++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKK---RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence 9999999999999888877552 13568999999999987766666677777888888999999999995 9999999
Q ss_pred HHHHHHh
Q psy8700 167 ELLNLEK 173 (200)
Q Consensus 167 ~i~~~~~ 173 (200)
.+.+.+.
T Consensus 158 ~l~~~~~ 164 (165)
T cd04146 158 ELCREVR 164 (165)
T ss_pred HHHHHHh
Confidence 9998664
No 68
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.3e-31 Score=190.83 Aligned_cols=165 Identities=35% Similarity=0.496 Sum_probs=143.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+||+++|++|||||||++++....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++..+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766443 4456677878899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++++++..+..|+..+.... .+..|+++++||+|+.+.......+...+++..+++++++||+++.|++++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-----~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-----NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999988887776554 356899999999999887777777788888888999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy8700 165 FAELLNLEKNR 175 (200)
Q Consensus 165 ~~~i~~~~~~~ 175 (200)
|+++.+.+...
T Consensus 160 f~~l~~~~~~~ 170 (210)
T PLN03108 160 FIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999877543
No 69
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=2.3e-31 Score=195.17 Aligned_cols=165 Identities=45% Similarity=0.697 Sum_probs=140.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||+++++.+.+...+.++..+.....+.+++..+.+.+|||+|++.+..+...++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999888888888887777777888888999999999999988888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCC----CCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCCCcHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGG----ANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVK 162 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~ 162 (200)
++++++++.+..|+..+...... .....+.|++||+||+|+....++...+...+... .++.++++||++|.|++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~ 160 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD 160 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence 99999999999999888765321 01235789999999999976555555555555443 35789999999999999
Q ss_pred HHHHHHHHHH
Q psy8700 163 ELFAELLNLE 172 (200)
Q Consensus 163 ~~~~~i~~~~ 172 (200)
++|++|.+.+
T Consensus 161 elf~~L~~~~ 170 (247)
T cd04143 161 EMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHh
Confidence 9999999866
No 70
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.3e-31 Score=184.68 Aligned_cols=162 Identities=40% Similarity=0.571 Sum_probs=139.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+......++..+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 6899999999999999999999888777777766444 345566777789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+..... +..|+++++||+|+.+..+........+....+++++++|+++|.|+.++|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-----~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-----PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988887776652 5799999999999877666666667777777889999999999999999999
Q ss_pred HHHHHHhc
Q psy8700 167 ELLNLEKN 174 (200)
Q Consensus 167 ~i~~~~~~ 174 (200)
+|.+.+.+
T Consensus 156 ~i~~~~~~ 163 (164)
T smart00175 156 ELAREILK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987754
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.4e-31 Score=184.19 Aligned_cols=159 Identities=35% Similarity=0.552 Sum_probs=137.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.+..+...+.++.+.. ....+..++..+.+++|||||+..+...+..+++.++++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988877766766633 3455566777789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|+..+..... .+.|+++++||+|+.+.......+...+....+++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-----NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999888766542 4689999999999976666666677777778889999999999999999999
Q ss_pred HHHHH
Q psy8700 167 ELLNL 171 (200)
Q Consensus 167 ~i~~~ 171 (200)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99874
No 72
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=2.3e-31 Score=186.43 Aligned_cols=157 Identities=29% Similarity=0.521 Sum_probs=134.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+|++++|++|+|||||++++..+.+...+.++..+.+.....+++..+.+++|||||++.+..++..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999998888888888776666677778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEEEe
Q psy8700 88 CTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFMET 153 (200)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~v 153 (200)
++++++++.+. .|+..+.... ++.|+++++||.|+.. .+.+...+...+++..+. +++++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHN------PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC------CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 99999999985 4655555422 4689999999999864 234556677788888887 99999
Q ss_pred cccCCCcHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLN 170 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~ 170 (200)
||++|.|++++|+.++.
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999998864
No 73
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=7.9e-31 Score=189.20 Aligned_cols=168 Identities=33% Similarity=0.499 Sum_probs=138.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+||+++|++|||||||+++|.+..+. .+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999987763 4555555333 345566777789999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|+++++++..+..+|........ .....|+++|+||+|+.........+...+....+++|+++||+++.|+++
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999876655444331 134579999999999987666666677777778889999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy8700 164 LFAELLNLEKNRN 176 (200)
Q Consensus 164 ~~~~i~~~~~~~~ 176 (200)
+|++|.+.+.+..
T Consensus 168 l~~~l~~~~~~~~ 180 (211)
T PLN03118 168 CFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999886654
No 74
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=5.1e-31 Score=185.84 Aligned_cols=179 Identities=40% Similarity=0.644 Sum_probs=147.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
.||+++|++|+|||||++++....+...+.++....+......++..+.+++||+||+.++..+...++..++++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999998887777787776656666667777889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
.++..++..+..++..+.+... ..+.|+++++||+|+.........+...+....+.+++++||+++.|+.++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLG----KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFEL 157 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999988887652 356899999999999765555555556666777889999999999999999999
Q ss_pred HHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700 168 LLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200 (200)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 200 (200)
+.+.+..... ......+++|++|
T Consensus 158 l~~~~~~~~~----------~~~~~~~~~~~~~ 180 (180)
T cd04137 158 LIEEIEKVEN----------PLDPGQKKKCSIM 180 (180)
T ss_pred HHHHHHHhcC----------CCCCCCCCCceeC
Confidence 9987743321 2223345678875
No 75
>KOG0095|consensus
Probab=100.00 E-value=2.7e-32 Score=177.38 Aligned_cols=163 Identities=33% Similarity=0.448 Sum_probs=150.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
=.+||+++|..|+|||+|++++..+-+++....+++ ++.-+++.++++++++++|||+|+++++++...|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 358999999999999999999999999988888888 5557899999999999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++..+|+-+..|+..+..+.. .+.--++|+||+|+.+.++++.....++.......|+++||++-+|++.+
T Consensus 86 vydiscqpsfdclpewlreie~yan-----~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-----NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-----cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 9999999999999999999999885 56677899999999999999988889998888889999999999999999
Q ss_pred HHHHHHHHh
Q psy8700 165 FAELLNLEK 173 (200)
Q Consensus 165 ~~~i~~~~~ 173 (200)
|..+.-.+.
T Consensus 161 f~~~a~rli 169 (213)
T KOG0095|consen 161 FLDLACRLI 169 (213)
T ss_pred HHHHHHHHH
Confidence 998876553
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=4.4e-31 Score=182.05 Aligned_cols=154 Identities=23% Similarity=0.368 Sum_probs=127.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||+.++..+.+.+.+.|+ ...+...+.+++..+.+.+|||+|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999998887666554 334456677788888999999999875 246678999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc--ccccCHHHHHHHHHHh-CCcEEEecccCCCcHHHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE--NREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~~ 164 (200)
++++++++.+..|+..+..... .+..|+++|+||.|+.. .+++...+...+++.. +++|++|||++|.||+++
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~----~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRN----ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 9999999999999988877652 36689999999999853 4566666777777665 489999999999999999
Q ss_pred HHHHHHH
Q psy8700 165 FAELLNL 171 (200)
Q Consensus 165 ~~~i~~~ 171 (200)
|+.+.+.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9998764
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.7e-31 Score=187.45 Aligned_cols=157 Identities=29% Similarity=0.434 Sum_probs=126.5
Q ss_pred ceEEEEECCCCCCHHHHHH-HHhhCC-----CCCCcCCCcc--cceeEE--------EEeCCcEEEEEEEeCCCCCCChh
Q psy8700 7 DYRVVVFGAGGVGKSSLVL-RFVKGT-----FRESYIPTIE--DTYRQV--------ISCNKNICTLQITDTTGSHQFPA 70 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~ 70 (200)
.+||+++|++|||||||+. ++.++. +...+.|+.+ +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 565433 3456777774 223222 24678889999999999875 3
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-------------------
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETE------------------- 130 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------------- 130 (200)
....+++++|++++|||++++.++..+.. |...+.... ++.|+++|+||+|+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~------~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC------PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC------CCCCEEEEEEchhccccccchhhhccccccccccc
Confidence 55678999999999999999999999974 666665433 4689999999999864
Q ss_pred ccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 131 NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
.+.+...++..+++..+++|++|||++|.||+++|+.+.+.
T Consensus 154 ~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 154 ADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 35667788899999999999999999999999999999864
No 78
>KOG0086|consensus
Probab=100.00 E-value=5.8e-32 Score=176.46 Aligned_cols=174 Identities=30% Similarity=0.394 Sum_probs=156.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
-.+|++++|+.|.|||+|+.++....+.....++.+..+ ...+.+.++.+++++|||+|++++++..+.|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 358999999999999999999999999888888888555 5567788899999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|++++++|..+..|+....... .+.+-+++++||.|+.+++++...++..++++..+.++++|+++|.|+.+.
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lA-----s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLA-----SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhC-----CCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999999888777 577888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHhhh
Q psy8700 165 FAELLNLEKNRNISLQLEKK 184 (200)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~ 184 (200)
|-...+.+..+-+..+++.+
T Consensus 163 Fl~c~~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPE 182 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHH
Confidence 99888887766555544433
No 79
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=7.9e-31 Score=190.05 Aligned_cols=163 Identities=38% Similarity=0.599 Sum_probs=136.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccc-cCCEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSIS-KGHAFIL 84 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~ 84 (200)
+||+++|++|+|||||++++..+.+. ..+.++.+ +.+...+.+++..+.+.+|||+|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 56666665 5556677778888999999999988 334455666 8999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+..++...+...++...+++++++||+++.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~----~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQ----LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999888876542 357899999999999877766666667777777889999999999999999
Q ss_pred HHHHHHHHhccc
Q psy8700 165 FAELLNLEKNRN 176 (200)
Q Consensus 165 ~~~i~~~~~~~~ 176 (200)
|+++.+.+..+.
T Consensus 155 ~~~l~~~~~~~~ 166 (221)
T cd04148 155 LEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHhhh
Confidence 999999886443
No 80
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.4e-31 Score=182.97 Aligned_cols=159 Identities=28% Similarity=0.382 Sum_probs=133.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC--CCCCCcCCCcc-cceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG--TFRESYIPTIE-DTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+||+++|++|||||||++++... .+...+.++.+ +.....+..+ +..+.+.+|||||++.+..+...++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 56677777775 3334444443 56789999999999998899999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|+++++++..+..|...+.... ...|+++|+||+|+.+..+........+....+++++++||+++.|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS------KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHH
Confidence 9999999999999988887777643 4589999999999977766666565666677788999999999999999
Q ss_pred HHHHHHHHH
Q psy8700 164 LFAELLNLE 172 (200)
Q Consensus 164 ~~~~i~~~~ 172 (200)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
No 81
>KOG0395|consensus
Probab=100.00 E-value=4.2e-31 Score=186.76 Aligned_cols=165 Identities=50% Similarity=0.865 Sum_probs=156.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+++|.+|+|||+|+.++..+.+...|.|++++.++..+.++++.+.+.++||+|++.+..+...++.+++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
|+++++.||+.+..++..+.+..+ ....|+++|+||+|+...+++...+...++..++++|+++||+.+.+++++|
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~----~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F 157 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKG----RDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVF 157 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC----cCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHH
Confidence 999999999999999999966664 4568999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy8700 166 AELLNLEKN 174 (200)
Q Consensus 166 ~~i~~~~~~ 174 (200)
..+.+.+..
T Consensus 158 ~~L~r~~~~ 166 (196)
T KOG0395|consen 158 YELVREIRL 166 (196)
T ss_pred HHHHHHHHh
Confidence 999998865
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=8.9e-31 Score=183.59 Aligned_cols=159 Identities=27% Similarity=0.528 Sum_probs=134.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|+|||||++++..+.+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999988888888776666667778888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEe
Q psy8700 88 CTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMET 153 (200)
Q Consensus 88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~v 153 (200)
++++.++..+...| ..+... .+..|+++++||+|+.+.. .+...+...+++..++ +++++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY------APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh------CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 99999999987544 444332 2668999999999986432 3445566777777886 79999
Q ss_pred cccCCCcHHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~ 172 (200)
||++|.|++++|+.+.+.+
T Consensus 155 Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 155 SALTQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCcCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.1e-30 Score=181.25 Aligned_cols=161 Identities=36% Similarity=0.525 Sum_probs=139.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776677766433 45677788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|+++++++.....|+..+.... .+..|+++++||+|+.........+...+....+++++++||++|.|+.++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-----SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999988887655 2668999999999998666556666677777778999999999999999999
Q ss_pred HHHHHHH
Q psy8700 166 AELLNLE 172 (200)
Q Consensus 166 ~~i~~~~ 172 (200)
+++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998865
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.4e-30 Score=180.31 Aligned_cols=160 Identities=33% Similarity=0.534 Sum_probs=136.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|+|||||++++..+.+...+.++..... ...+...+..+.+.+||+||++.+..++..++.++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999887666655554333 345555677789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|...+..... .+.|+++++||+|+.........+...+....+++++++|++++.|+.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-----NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888877663 3689999999999987666666666777777889999999999999999999
Q ss_pred HHHHHH
Q psy8700 167 ELLNLE 172 (200)
Q Consensus 167 ~i~~~~ 172 (200)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998764
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=8.3e-31 Score=182.83 Aligned_cols=162 Identities=22% Similarity=0.324 Sum_probs=134.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+.+||+++|.+|||||||+++++++.+. ..+.|+....+. ..+..++..+.+.+||++|++.+..+...++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999887 778888876553 4566778888999999999999988999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNV 161 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i 161 (200)
++|+|++++.++..+..|+..+.. ..+.|+++|+||+|+.+.......+...+.+..++ .++++||+++.|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~-------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM-------LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc-------CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 999999999999888777764421 23589999999999965544333344556666776 5799999999999
Q ss_pred HHHHHHHHHHHh
Q psy8700 162 KELFAELLNLEK 173 (200)
Q Consensus 162 ~~~~~~i~~~~~ 173 (200)
+++|+.+.+.+.
T Consensus 155 ~~lf~~l~~~~~ 166 (169)
T cd01892 155 NELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=3.3e-30 Score=180.30 Aligned_cols=167 Identities=28% Similarity=0.458 Sum_probs=137.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.+..+...+.++.+..+ .......+..+.+.+||+||++.+..++..+++++|++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777666665333 345566777789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF 165 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~~~ 165 (200)
|++++.++.....|...+...... ....+.|+++|+||+|+..+......+...+....+ .+++++|+++|.|+.++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASP-SDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCc-cCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 999999999888877766554421 123468999999999998655555556666667776 699999999999999999
Q ss_pred HHHHHHHhcc
Q psy8700 166 AELLNLEKNR 175 (200)
Q Consensus 166 ~~i~~~~~~~ 175 (200)
+++.+.+.+.
T Consensus 160 ~~i~~~~~~~ 169 (172)
T cd01862 160 ETIARKALEQ 169 (172)
T ss_pred HHHHHHHHhc
Confidence 9999977654
No 87
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=1.5e-30 Score=185.32 Aligned_cols=155 Identities=25% Similarity=0.383 Sum_probs=132.5
Q ss_pred ECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCCh
Q psy8700 13 FGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSR 91 (200)
Q Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (200)
+|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888878888886443 45667788889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 92 QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
.++..+..|...+.... +..|+++|+||+|+... ..... ...+++..++.|++|||++|.||.++|+++.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~------~~~piilvgNK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC------ENIPIVLCGNKVDVKDR-KVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999888887654 56899999999998643 33332 345666778899999999999999999999998
Q ss_pred Hhcc
Q psy8700 172 EKNR 175 (200)
Q Consensus 172 ~~~~ 175 (200)
+.+.
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 7554
No 88
>KOG0091|consensus
Probab=99.97 E-value=3.2e-31 Score=174.76 Aligned_cols=167 Identities=32% Similarity=0.422 Sum_probs=146.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEE-EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVI-SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
.++++++|++-+|||||++++..+++.+...|+.+ +++...+ .-.+..+++++|||+|+++++++...|+++.-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 37899999999999999999999999888888887 3333322 235677999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|++++++|+.+..|+.......+ .+.+.-+.+|++|.|+.+++++.-++++.++...|..|+++|+++|.|+++.
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q---~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQ---GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcC---CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999998888774 2333444589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q psy8700 165 FAELLNLEKNRN 176 (200)
Q Consensus 165 ~~~i~~~~~~~~ 176 (200)
|..+.+.+...-
T Consensus 165 F~mlaqeIf~~i 176 (213)
T KOG0091|consen 165 FDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999988775443
No 89
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.9e-30 Score=178.24 Aligned_cols=167 Identities=32% Similarity=0.420 Sum_probs=138.7
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 79 (200)
|++....+||+++|++|||||||++++..+.+.+.+.++.+ ......+..++..+.+.+||+||+..+......++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 55545679999999999999999999998777666666655 33344566677778999999999999999889999999
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
|++++|+|++++.++..+..|...+.... ....|+++++||+|+.+..+........+......+++++||++|.
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 155 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYA-----NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESD 155 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999888887776654 2468999999999998766666665666666667899999999999
Q ss_pred cHHHHHHHHHHHH
Q psy8700 160 NVKELFAELLNLE 172 (200)
Q Consensus 160 ~i~~~~~~i~~~~ 172 (200)
|+.++|++|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.5e-30 Score=177.36 Aligned_cols=159 Identities=33% Similarity=0.495 Sum_probs=134.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.+..+...+.++.+..+. ..+..++..+.+++||+||++.+..+...+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999998876666777665443 34456677789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+..... ....|+++|+||+|+... .....+...+....+++++++||++|.|+.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~~~~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYST----NNDIVKMLVGNKIDKENR-EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCC----CCCCcEEEEEECCccccc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence 99999999999998888877653 467899999999999733 3344556677777889999999999999999999
Q ss_pred HHHHH
Q psy8700 167 ELLNL 171 (200)
Q Consensus 167 ~i~~~ 171 (200)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98874
No 91
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.7e-30 Score=177.87 Aligned_cols=159 Identities=53% Similarity=0.847 Sum_probs=140.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|++|||||||++++++..+...+.++....+......++..+.+++||+||...+..+...+++.+|++++|+|.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999888878888887766666666676778999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i 168 (200)
++++++.....|+..+..... ....|+++++||+|+.............+....+++++++|++++.|++++|++|
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKD----DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999888773 2578999999999998766666667777777778899999999999999999999
Q ss_pred HHH
Q psy8700 169 LNL 171 (200)
Q Consensus 169 ~~~ 171 (200)
.+.
T Consensus 157 ~~~ 159 (160)
T cd00876 157 VRE 159 (160)
T ss_pred Hhh
Confidence 874
No 92
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8.7e-30 Score=182.03 Aligned_cols=162 Identities=43% Similarity=0.656 Sum_probs=134.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|++|||||||+++++.+.+...+.++........+...+..+.+++||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999998877777777655556666777778999999999999998989999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-cccCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-REVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
+++.++..+..|+..+..... ....|++||+||+|+... ............. .++.+++++||++|.|+.++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKE----DKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence 999999999999888877653 356899999999998653 3333333333222 3457899999999999999999
Q ss_pred HHHHHHhc
Q psy8700 167 ELLNLEKN 174 (200)
Q Consensus 167 ~i~~~~~~ 174 (200)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (198)
T cd04147 157 ELLRQANL 164 (198)
T ss_pred HHHHHhhc
Confidence 99997753
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1e-29 Score=180.16 Aligned_cols=174 Identities=29% Similarity=0.463 Sum_probs=137.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
.||+++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+......++.++++++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988777666676665555566667777889999999998887777778889999999999
Q ss_pred CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc----------cccCHHHHHHHHHHhCC-cEEEecc
Q psy8700 88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETEN----------REVSAAEGEAEAKMWGC-HFMETSA 155 (200)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~-~~~~vSa 155 (200)
+++.+++..+.. |+..+.... ++.|+++|+||+|+.+. ......+...+++..+. +||++||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC------PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999875 666665433 46999999999998542 23334556677778885 8999999
Q ss_pred cCCCcHHHHHHHHHHHHhccchhHHHhhhcccccccccCCcccc
Q psy8700 156 KTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSV 199 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 199 (200)
++|.|++++|+++.+.+ ...+.++...+||.+
T Consensus 156 ~~~~~v~~~f~~l~~~~------------~~~~~~~~~~~~~~~ 187 (187)
T cd04129 156 LTGEGVDDVFEAATRAA------------LLVRKSEPGAGCCII 187 (187)
T ss_pred CCCCCHHHHHHHHHHHH------------hcccCcccccCcccC
Confidence 99999999999999744 233344455577753
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.5e-29 Score=177.47 Aligned_cols=159 Identities=30% Similarity=0.502 Sum_probs=130.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
.||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+.+|||+|++.+...+..++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999888888888876666666777888899999999999998888889999999999999
Q ss_pred CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEe
Q psy8700 88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMET 153 (200)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~v 153 (200)
+++++++..+.. |...+... .++.|+++|+||.|+.... .........++...+. +++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh------CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 999999988865 44444432 2568999999999986432 2223445555666664 89999
Q ss_pred cccCCCcHHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~ 172 (200)
||++|.|++++|+++.+.+
T Consensus 156 Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 156 SAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccccCcCHHHHHHHHHHHh
Confidence 9999999999999998754
No 95
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.7e-29 Score=176.52 Aligned_cols=158 Identities=32% Similarity=0.591 Sum_probs=131.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||+++|.+..+...+.++....+......++..+.+++||+||++.+......++..+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999887777777776666666777888999999999999888888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc-----------cCHHHHHHHHHHhCC-cEEEecc
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE-----------VSAAEGEAEAKMWGC-HFMETSA 155 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~vSa 155 (200)
.+++.++......|....... ....|+++|+||+|+..... ....+...+....+. +++++||
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 155 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY-----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSA 155 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeec
Confidence 999999888766554333333 24799999999999976543 234556667777777 9999999
Q ss_pred cCCCcHHHHHHHHHH
Q psy8700 156 KTNHNVKELFAELLN 170 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~ 170 (200)
++|.|+.++|++|.+
T Consensus 156 ~~~~gi~~l~~~i~~ 170 (171)
T cd00157 156 LTQEGVKEVFEEAIR 170 (171)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 96
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=2.7e-29 Score=173.04 Aligned_cols=157 Identities=42% Similarity=0.631 Sum_probs=134.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+||+++|++|||||||++++.+..+...+.++.+..+ ......++....+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777666666444 345555667789999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|+++++++..+..|+..+..... ...|+++++||+|+.........+...+....+.+++++|++++.|+.++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-----ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888877662 5689999999999975555566666777777788999999999999999999
Q ss_pred HHH
Q psy8700 167 ELL 169 (200)
Q Consensus 167 ~i~ 169 (200)
+|.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 986
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2e-29 Score=178.03 Aligned_cols=165 Identities=17% Similarity=0.230 Sum_probs=124.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEe-CCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-NKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
..+||+++|++|||||||++++..+.+... .|+.+... ...+.. ++..+.+.+|||||++++..++..++.++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998776543 55554332 222322 345689999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH--H----hCCcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK--M----WGCHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~vSa~~ 157 (200)
+|+|+++++++.....|+..+..... ..+.|++||+||+|+.+... ..+...+.. . .+++++++||++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~----~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSE----NQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhh----cCCCcEEEEEECcCccccCC--HHHHHHHhCccccCCCCceEEEEeeccc
Confidence 99999999998888888777665542 35689999999999864322 222222211 1 124688999999
Q ss_pred CCcHHHHHHHHHHHHhccch
Q psy8700 158 NHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~~~~ 177 (200)
|.|+++++++|.+.+.+...
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988854433
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=8.2e-30 Score=178.77 Aligned_cols=158 Identities=20% Similarity=0.256 Sum_probs=121.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++..+.+. .+.|+.+.... ... ...+.+++|||||++.+..++..+++++|++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999877663 45666654433 222 245789999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 159 (200)
|+|+++++++.....++..+.... ..++.|++||+||.|+.+... ..+...... ...+.++++||++|.
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED----ELRDAVILVFANKQDLPDAMK--AAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH----hhcCCcEEEEEeCcCcccCCC--HHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 999999999999888887765433 135689999999999865432 111111111 112357789999999
Q ss_pred cHHHHHHHHHHHH
Q psy8700 160 NVKELFAELLNLE 172 (200)
Q Consensus 160 ~i~~~~~~i~~~~ 172 (200)
|+.++|++|.+.+
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.5e-29 Score=177.03 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=121.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++..+.+. .+.|+.+.... . ++...+.+++||+||++.++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35689999999999999999999877664 45666654332 2 23345789999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC--------cEEEeccc
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC--------HFMETSAK 156 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~vSa~ 156 (200)
|+|+++++++.....++..+.... ..++.|++|++||.|+.+... ..+ .....++ .++++||+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~----~~~~~piilv~NK~Dl~~~~~--~~~---~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNED----ELRDAVLLVFANKQDLPNAMN--AAE---ITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCH----hhCCCCEEEEEECCCCCCCCC--HHH---HHHHhCccccCCCceEEEeccCC
Confidence 999999999988777666554322 135689999999999876432 222 2222222 35689999
Q ss_pred CCCcHHHHHHHHHHHHhc
Q psy8700 157 TNHNVKELFAELLNLEKN 174 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~ 174 (200)
+|.|+.++|++|.+.+..
T Consensus 162 ~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 162 SGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887654
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=8.7e-30 Score=177.47 Aligned_cols=156 Identities=15% Similarity=0.256 Sum_probs=120.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
.+.+||+++|++|||||||++++..+.+. .+.|+.+..+. .+. ...+.+++|||||++++..++..++.++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999876653 35566654433 222 245789999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-----hCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-----WGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~ 159 (200)
|+|++++.++.....++..+..... ..+.|++||+||+|+.+.. ...+....... ...+++++||++|.
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDRE----MRDALLLVFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHh----hcCCcEEEEEECcCCccCC--CHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 9999999999888887766654321 3568999999999986532 23333332211 12368999999999
Q ss_pred cHHHHHHHHHH
Q psy8700 160 NVKELFAELLN 170 (200)
Q Consensus 160 ~i~~~~~~i~~ 170 (200)
|+.++|++|.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999865
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.4e-30 Score=177.89 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=122.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
.|+++|++|||||||++++.+..+...+.|+.+... ..++...+.+.+||+||++.+..++..+++++|++++|+|.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 489999999999999999999877777778776432 23345568999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH----HHHHHHHHHhCCcEEEecccC------C
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA----AEGEAEAKMWGCHFMETSAKT------N 158 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~------~ 158 (200)
+++.++.....|+..+... .++.|+++|+||.|+.+...... .....+++..+++++++||++ +
T Consensus 78 t~~~s~~~~~~~l~~~~~~------~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~ 151 (164)
T cd04162 78 ADSERLPLARQELHQLLQH------PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRM 151 (164)
T ss_pred CCHHHHHHHHHHHHHHHhC------CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHH
Confidence 9999988888877666432 25689999999999976553322 122334445567899988888 9
Q ss_pred CcHHHHHHHHHH
Q psy8700 159 HNVKELFAELLN 170 (200)
Q Consensus 159 ~~i~~~~~~i~~ 170 (200)
+|++++|+.+++
T Consensus 152 ~~v~~~~~~~~~ 163 (164)
T cd04162 152 EAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 102
>KOG0081|consensus
Probab=99.97 E-value=7.2e-31 Score=172.39 Aligned_cols=164 Identities=28% Similarity=0.451 Sum_probs=144.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEe---------CCcEEEEEEEeCCCCCCChhhHhhccc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC---------NKNICTLQITDTTGSHQFPAMQRLSIS 77 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~D~~G~~~~~~~~~~~~~ 77 (200)
+|.+.+|++|+|||||+.++..+++....+++.+-.+ .+.+.. .+..+.+++|||+|+++++++..++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 5778899999999999999999999888888877443 333322 245589999999999999999999999
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT 157 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 157 (200)
++-+++++||+++..+|-+++.|+..+.... -+.++-+++++||+|+.+.+.+...++..++..+++|||++||-+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA----YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA----YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhh----ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 9999999999999999999999999998877 467788999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcc
Q psy8700 158 NHNVKELFAELLNLEKNR 175 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~~ 175 (200)
|.|+.+..+.+...+-++
T Consensus 166 g~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMKR 183 (219)
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999998888866444
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.2e-29 Score=175.23 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=117.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|.+|||||||++++..+.+. .+.|+.+.... .. ....+.+.+||+||++.+..++..+++++|++++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999877765 46676654332 22 2245789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHH----HHhCCcEEEecccCCCcHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEA----KMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~vSa~~~~~i~ 162 (200)
++++.++.....++..+..... ..+.|++|++||.|+.+... ..+ ...+. ...++.++++||++|.|++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~ 150 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDE----LRDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCATSGDGLY 150 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHH----hcCCCEEEEEECCCCCCCCC--HHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence 9999999998888876654321 24589999999999865322 111 11111 1112357899999999999
Q ss_pred HHHHHHHH
Q psy8700 163 ELFAELLN 170 (200)
Q Consensus 163 ~~~~~i~~ 170 (200)
++|++|.+
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99999864
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=4.5e-29 Score=174.17 Aligned_cols=158 Identities=19% Similarity=0.245 Sum_probs=122.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|++|||||||++++.+..+.. +.|+.+.... .+ +...+.+++|||||+..+...+..++.++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999876543 5666543332 22 33457899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC------CcEEEecccCCCcHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG------CHFMETSAKTNHNVK 162 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~ 162 (200)
+++.++.....|+..+.+... ..+.|++|++||+|+... ....+...+....+ +.++++||++|.|+.
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKE----LRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChh----hCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence 999999999888877765432 345899999999998643 23333333332221 268899999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|++|.+.+.+..
T Consensus 151 ~~f~~l~~~~~~~~ 164 (169)
T cd04158 151 EGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998765443
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.2e-29 Score=178.94 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=120.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++..+.+.. +.|+.+..+. .+ +...+.+++|||||++.+..++..++.++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456999999999999999999998776643 5566654332 22 2345789999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 159 (200)
|+|+++++++.....++..+.... ...+.|++||+||.|+.+... ..+...... ...+.++++||++|.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSED----ELRDAVLLVFANKQDLPNAMS--TTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCH----hhcCCCEEEEEeCCCCCCCCC--HHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 999999999998887776654322 135689999999999865321 111111111 112256789999999
Q ss_pred cHHHHHHHHHHHHhc
Q psy8700 160 NVKELFAELLNLEKN 174 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~ 174 (200)
|++++|++|.+.+.+
T Consensus 165 gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 165 GLYEGLDWLSANIKK 179 (182)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987643
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4.6e-28 Score=168.61 Aligned_cols=159 Identities=30% Similarity=0.367 Sum_probs=120.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|.+|||||||++++..+.+...+.++.+ .+......++..+.+.+|||||...+...+..++..+|++++|+|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 4899999999999999999999888655443333 233334456677899999999998888877888899999999999
Q ss_pred CCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHH-hCC-cEEEecccCCCcHH
Q psy8700 88 CTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKM-WGC-HFMETSAKTNHNVK 162 (200)
Q Consensus 88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-~~~-~~~~vSa~~~~~i~ 162 (200)
++++.++..+..+| ..+.... .+.|+++|+||+|+.+..... .......... .+. +++++||++|.|++
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~------~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG------VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 99999999986544 4444332 468999999999997654321 1112222222 233 79999999999999
Q ss_pred HHHHHHHHHHh
Q psy8700 163 ELFAELLNLEK 173 (200)
Q Consensus 163 ~~~~~i~~~~~ 173 (200)
++|+.+...+.
T Consensus 154 ~lf~~~~~~~~ 164 (166)
T cd01893 154 EVFYYAQKAVL 164 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999988664
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.8e-28 Score=171.81 Aligned_cols=158 Identities=17% Similarity=0.244 Sum_probs=121.2
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+...+||+++|++|||||||++++.+..+ ..+.++.+.. ...+..+ .+.+.+|||||++.+..++..++.++|++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 356779999999999999999999998744 3445555422 2233333 46899999999999888999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccC
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKT 157 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~ 157 (200)
++|+|++++.++.....|+..+.... ...+.|++||+||+|+.+.. ...+...... ..+++++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEE----RLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCh----hhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCC
Confidence 99999999999988887776665432 13568999999999986543 2222222221 2346899999999
Q ss_pred CCcHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLN 170 (200)
Q Consensus 158 ~~~i~~~~~~i~~ 170 (200)
|.|++++|+++.+
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 108
>KOG0393|consensus
Probab=99.96 E-value=8.2e-29 Score=171.56 Aligned_cols=167 Identities=29% Similarity=0.523 Sum_probs=145.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+|++++|+.++|||+|+-.+..+.++..|.|+..+.+...+.++ +..+.+.+|||+|+++|.++++..+..+|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4689999999999999999999999999999999999999889895 999999999999999999999899999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEE
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFM 151 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 151 (200)
+|++.++.++.++..-|-.-... .++..|+++|++|.||.+. ..+...+....++..|+ .|+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~-----~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~ 157 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKH-----HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYL 157 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHh-----hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceee
Confidence 99999999999977666332222 2588999999999999743 24556677888888885 899
Q ss_pred EecccCCCcHHHHHHHHHHHHhccch
Q psy8700 152 ETSAKTNHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 152 ~vSa~~~~~i~~~~~~i~~~~~~~~~ 177 (200)
++||++..|++++|+...........
T Consensus 158 EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 158 ECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eehhhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999998755444
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.6e-27 Score=172.44 Aligned_cols=173 Identities=26% Similarity=0.388 Sum_probs=141.2
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
......+||+++|++|||||||+++++.+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3466789999999999999999999988888888888887544 344555777899999999999999989999999999
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCc
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHN 160 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~ 160 (200)
++++|+|+++..++..+..|...+.... .+.|+++++||+|+.+.. ... ....+....++.++++|+++|.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC------ENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYN 155 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999888877654 458999999999985432 222 22345566778999999999999
Q ss_pred HHHHHHHHHHHHhccchhHHHh
Q psy8700 161 VKELFAELLNLEKNRNISLQLE 182 (200)
Q Consensus 161 i~~~~~~i~~~~~~~~~~~~~~ 182 (200)
++++|.+|.+.+.....-+.++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ld 177 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVG 177 (215)
T ss_pred HHHHHHHHHHHHhhcccceecC
Confidence 9999999999887655433333
No 110
>KOG0097|consensus
Probab=99.96 E-value=3.2e-28 Score=157.19 Aligned_cols=171 Identities=29% Similarity=0.384 Sum_probs=150.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+|.+++|+-|+|||+|+..+...++-..-.++++..+ ...+.+.++++++++|||+|+++++...+.|++.+.+.+.|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 58999999999999999999999888776677777444 44667789999999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++.+.++..+..|+....... .++..+++++||.|+..++++.-.++..++.+.|.-++++||++|.|+.+.|
T Consensus 91 yditrrstynhlsswl~dar~lt-----npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLT-----NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccC-----CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 99999999999999998777666 3778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhHHHh
Q psy8700 166 AELLNLEKNRNISLQLE 182 (200)
Q Consensus 166 ~~i~~~~~~~~~~~~~~ 182 (200)
-.....+.+.-++..++
T Consensus 166 le~akkiyqniqdgsld 182 (215)
T KOG0097|consen 166 LETAKKIYQNIQDGSLD 182 (215)
T ss_pred HHHHHHHHHhhhcCccc
Confidence 87777666555444443
No 111
>KOG0083|consensus
Probab=99.96 E-value=7.7e-30 Score=162.95 Aligned_cols=161 Identities=31% Similarity=0.532 Sum_probs=143.0
Q ss_pred EEECCCCCCHHHHHHHHhhCCCC-CCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 11 VVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 11 ~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
+++|+++.|||+|+-++..+.+- .+.+++.+-.++ +....++.++++++|||+|++++++....|++.+|++++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999888877663 445666664444 5667789999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i 168 (200)
.+..+|++.+.|+..+.++.. ....+.+++||+|+...+.+...+...++..+++|++++||++|.|++-.|-.|
T Consensus 81 ankasfdn~~~wlsei~ey~k-----~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-----EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-----hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence 999999999999999999885 667889999999998888888888999999999999999999999999999999
Q ss_pred HHHHhccc
Q psy8700 169 LNLEKNRN 176 (200)
Q Consensus 169 ~~~~~~~~ 176 (200)
.+.+....
T Consensus 156 a~~l~k~~ 163 (192)
T KOG0083|consen 156 AEELKKLK 163 (192)
T ss_pred HHHHHHhc
Confidence 98876544
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=4.3e-28 Score=169.97 Aligned_cols=155 Identities=20% Similarity=0.265 Sum_probs=118.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+.+||+++|++|+|||||++++..+.+.. +.++.+..+. .... ..+.+.+||+||++.+...+..++..+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999877653 4555543332 2222 356899999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHH----HHhCCcEEEecccCCCc
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEA----KMWGCHFMETSAKTNHN 160 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~vSa~~~~~ 160 (200)
+|+++++++.....++..+..... ..+.|++|++||+|+.+.. ...+ ...+. ...+++++++||++|.|
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~----~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHED----LRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchh----hcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 999999888887777766654331 3568999999999986532 1121 11111 22345789999999999
Q ss_pred HHHHHHHHHH
Q psy8700 161 VKELFAELLN 170 (200)
Q Consensus 161 i~~~~~~i~~ 170 (200)
++++|++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=9.2e-28 Score=166.32 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=116.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC-CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+|+++|++|||||||++++.+... ...+.|+.+..... . ....+.+.+|||||+..+..++..++..+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 589999999999999999998753 45566666533221 2 2345789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH---HH--HhCCcEEEecccCCCcHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE---AK--MWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~--~~~~~~~~vSa~~~~~i~ 162 (200)
++++.++.....++..+...... .....|+++|+||+|+.+... ..+.... .. ....+++++||++|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDI--KHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCccc--ccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 99999888877777666543211 124689999999999865432 1111111 11 112358999999999999
Q ss_pred HHHHHHHH
Q psy8700 163 ELFAELLN 170 (200)
Q Consensus 163 ~~~~~i~~ 170 (200)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999865
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.6e-26 Score=164.51 Aligned_cols=152 Identities=21% Similarity=0.197 Sum_probs=121.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEe-----CCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-----NKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
+||+++|+.|+|||||++++..+.+...+.++.+..+ ...+.. ++..+.+++|||+|++.+..++..++.++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999998888888877433 233333 2467899999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCC--------------CCCCCCcEEEEeeCCCCCcccccCHHH----HHHHH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGA--------------NELASIPIMLVGNKCDETENREVSAAE----GEAEA 143 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 143 (200)
+|+|||++++.+++.+..|+..+....... ....+.|++||+||.|+.+.+...... ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999998887653210 012468999999999997655444332 34456
Q ss_pred HHhCCcEEEecccCCC
Q psy8700 144 KMWGCHFMETSAKTNH 159 (200)
Q Consensus 144 ~~~~~~~~~vSa~~~~ 159 (200)
...+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 7788999998887664
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.5e-27 Score=164.98 Aligned_cols=153 Identities=19% Similarity=0.285 Sum_probs=115.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
+|+++|++|||||||++++.+..+.. ..|+.+.... .+.. ...+.+.+||+||+..+...+..++..+|++++|+|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 68999999999999999999987643 3455543322 2222 3457899999999999888899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH------HHHHhCCcEEEecccCCCcHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA------EAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~vSa~~~~~i~ 162 (200)
+++.++.....++..+.... ...+.|+++|+||+|+..... ..+... +....+++++++||++|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 151 (160)
T cd04156 78 SDEARLDESQKELKHILKNE----HIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLA 151 (160)
T ss_pred CcHHHHHHHHHHHHHHHhch----hhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEecccccCCChH
Confidence 99998888888777665433 135689999999999864321 111111 111123469999999999999
Q ss_pred HHHHHHHH
Q psy8700 163 ELFAELLN 170 (200)
Q Consensus 163 ~~~~~i~~ 170 (200)
++|++|.+
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999865
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=1.4e-27 Score=164.82 Aligned_cols=152 Identities=24% Similarity=0.277 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|++++|||||++++..+.+. .+.++.+.... .. +.....+++|||||+..+..++..++..++++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999876654 34455443322 22 23457899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HHH----HHhCCcEEEecccCCCcHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AEA----KMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~vSa~~~~~i~~ 163 (200)
+++.++.....++..+.... ...+.|+++|+||+|+.+... ..+.. .+. ...+.+++++||++|.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEE----ELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CCHHHHHHHHHHHHHHHhch----hhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence 99888777666665443322 135689999999999865331 11111 111 11124699999999999999
Q ss_pred HHHHHHH
Q psy8700 164 LFAELLN 170 (200)
Q Consensus 164 ~~~~i~~ 170 (200)
+|+++.+
T Consensus 151 l~~~l~~ 157 (158)
T cd04151 151 GMDWLVN 157 (158)
T ss_pred HHHHHhc
Confidence 9999875
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1e-27 Score=166.91 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=118.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
+|+++|++|||||||++++.+. +...+.|+.+... ..+.. ..+.+++||+||+..+..++..++.+++++++|+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 5566677766432 23333 457899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH----HHHHHHhC--CcEEEecccCC----
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG----EAEAKMWG--CHFMETSAKTN---- 158 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~--~~~~~vSa~~~---- 158 (200)
+++.++.....|+..+.... .....|++||+||.|+.+......... ..+....+ +.++++||++|
T Consensus 77 s~~~s~~~~~~~l~~l~~~~----~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHP----RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred CchhHHHHHHHHHHHHHcCc----cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 99999999888887776543 135689999999999976542221111 11221222 46888999998
Q ss_pred --CcHHHHHHHHHH
Q psy8700 159 --HNVKELFAELLN 170 (200)
Q Consensus 159 --~~i~~~~~~i~~ 170 (200)
.|+.+.|+||..
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999964
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=6.9e-27 Score=166.13 Aligned_cols=158 Identities=16% Similarity=0.259 Sum_probs=120.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+||+++|++|||||||++++.+..+. .+.++..... ..+..+ ...+.+||+||+..+..++..++..+++++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 356799999999999999999999987763 4555554332 233333 357899999999988888899999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----------------hC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----------------WG 147 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~ 147 (200)
+|+|+++..++.....++..+.... ...+.|++|++||+|+... ....+....... ..
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~----~~~~~pvivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDE----ELANVPFLILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCc----cccCCCEEEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccccCcee
Confidence 9999999988888777777766533 2356899999999998642 223333333221 22
Q ss_pred CcEEEecccCCCcHHHHHHHHHHH
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
.+++++||++|.|+.++|+++.+.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 468999999999999999999875
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=6.9e-27 Score=161.36 Aligned_cols=152 Identities=20% Similarity=0.318 Sum_probs=117.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
||+++|.+|||||||++++.+... ..+.++.+... ..... ....+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998773 33444444322 22222 246899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCcHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~ 163 (200)
++++++.....++..+..... ..+.|+++++||+|+...... .+..... .....+++++||++|.|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~----~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEE----LKGVPLLIFANKQDLPGALSV--SELIEKLGLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcc----cCCCcEEEEeeccCCccccCH--HHHHHhhChhhccCCcEEEEEeeCCCCCCHHH
Confidence 999999998888877766442 467899999999998764421 1111111 12345899999999999999
Q ss_pred HHHHHHH
Q psy8700 164 LFAELLN 170 (200)
Q Consensus 164 ~~~~i~~ 170 (200)
+|++|.+
T Consensus 151 ~~~~l~~ 157 (158)
T cd00878 151 GLDWLLQ 157 (158)
T ss_pred HHHHHhh
Confidence 9999875
No 120
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=9.9e-27 Score=164.40 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=118.5
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
..+..++|+++|++|||||||++++.+..+. .+.|+..... ..+.. ..+.+.+||+||+..+..++..++.+++++
T Consensus 13 ~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 13 LWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred cccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3466799999999999999999999987653 2344433322 22222 346899999999999899999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH------------hCCcE
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM------------WGCHF 150 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~ 150 (200)
++|+|++++.++.....++..+.... ...+.|+++|+||+|+.... ...+....... ....+
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~----~~~~~piliv~NK~Dl~~~~--~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDE----ELATVPFLILGNKIDAPYAA--SEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCh----hhcCCCEEEEEeCccccCCC--CHHHHHHHcCCCcccccccccCCceeEE
Confidence 99999999998888877776665432 13568999999999986432 22222211110 12359
Q ss_pred EEecccCCCcHHHHHHHHHHH
Q psy8700 151 METSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~ 171 (200)
+++||++|.|++++++||.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999764
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.2e-26 Score=161.47 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=113.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC------CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF------RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+|+++|++|||||||++++..... ...+.++...... .+..+ ...+.+|||||+..+...+..++..++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999976432 1223333332221 22233 46899999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-------HhCCcEEEecc
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-------MWGCHFMETSA 155 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~vSa 155 (200)
++|+|.++++++.....++..+..... ..+.|+++++||+|+.+... ..+...+.. ..+.+++++||
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEA----LEGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChh----hcCCCEEEEEEccccccCCC--HHHHHHHhccccccccCCceEEEEeeC
Confidence 999999999888888777777665432 35689999999999865432 222222211 12357999999
Q ss_pred cCCCcHHHHHHHHHH
Q psy8700 156 KTNHNVKELFAELLN 170 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~ 170 (200)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999865
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=2.1e-26 Score=161.25 Aligned_cols=159 Identities=23% Similarity=0.326 Sum_probs=122.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+.+.+||+++|++||||||+++++..+... ...||.+.... .+.. ..+.+.+||.+|+..++..+..++.+++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc-eeee--CcEEEEEEeccccccccccceeeccccceeE
Confidence 478899999999999999999999876543 35555543332 2333 3458999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH------HhCCcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK------MWGCHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~vSa~~ 157 (200)
||+|.++++.+......+..+.... .....|++|++||.|+.+... ..+...... ...+.++.+||.+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~----~~~~~piLIl~NK~D~~~~~~--~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDP----ELKDIPILILANKQDLPDAMS--EEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSG----GGTTSEEEEEEESTTSTTSST--HHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred EEEecccceeecccccchhhhcchh----hcccceEEEEeccccccCcch--hhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 9999999998888877776666544 245789999999999876443 222222211 1234689999999
Q ss_pred CCcHHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNLE 172 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~ 172 (200)
|+|+.+.++||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999998864
No 123
>KOG4252|consensus
Probab=99.95 E-value=6.7e-28 Score=161.52 Aligned_cols=167 Identities=29% Similarity=0.402 Sum_probs=150.3
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+|.+++|..++||||++++++.+-+...|..+++..+ .....++++.+.+.+||++|++++..+..+|++.+.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 358999999999999999999999999999999988443 4455667777889999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
||+.+|+.+|+....|.+.+.... .++|.++|-||+|+.++..+...+...+++...+.+|.+|++...|+..+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~------~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET------ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh------ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999998866 77999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHhccchh
Q psy8700 165 FAELLNLEKNRNIS 178 (200)
Q Consensus 165 ~~~i~~~~~~~~~~ 178 (200)
|..+.+.+.+...+
T Consensus 173 F~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 173 FAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887654443
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=6.3e-26 Score=156.24 Aligned_cols=153 Identities=24% Similarity=0.320 Sum_probs=118.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
.|+++|++|||||||++++.+..+...+.|+.+..... +... .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 37999999999999999999998877777777644432 2222 37899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCcHHH
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~ 163 (200)
++..++.....++..+..... ....|+++|+||+|+.+.... ....... ....++++++|+++|.|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPS----LEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChh----hcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHH
Confidence 999888887777766654331 356899999999998654321 1111111 11235789999999999999
Q ss_pred HHHHHHH
Q psy8700 164 LFAELLN 170 (200)
Q Consensus 164 ~~~~i~~ 170 (200)
++++|.+
T Consensus 152 l~~~l~~ 158 (159)
T cd04159 152 VLDWLIK 158 (159)
T ss_pred HHHHHhh
Confidence 9999875
No 125
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.9e-25 Score=155.94 Aligned_cols=158 Identities=21% Similarity=0.236 Sum_probs=107.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCC-CcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhhc---cccCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRLS---ISKGH 80 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~~ 80 (200)
.|+++|.+|||||||+++|.+........+ +............ ....+.+|||||+.. ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999987543111111 1111111112222 224799999999632 22223333 34599
Q ss_pred EEEEEeeCCCh-hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCC
Q psy8700 81 AFILVYSCTSR-QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTN 158 (200)
Q Consensus 81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~ 158 (200)
++++|+|++++ .+++.+..|...+..... .....|+++|+||+|+.+...... ....+... .+.+++++||+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~---~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNP---ELLEKPRIVVLNKIDLLDEEELFE-LLKELLKELWGKPVFPISALTG 156 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCc---cccccccEEEEEchhcCCchhhHH-HHHHHHhhCCCCCEEEEecCCC
Confidence 99999999999 788888888877766532 124689999999999876554322 22333333 3678999999999
Q ss_pred CcHHHHHHHHHHH
Q psy8700 159 HNVKELFAELLNL 171 (200)
Q Consensus 159 ~~i~~~~~~i~~~ 171 (200)
.|++++|+++.+.
T Consensus 157 ~gi~~l~~~i~~~ 169 (170)
T cd01898 157 EGLDELLRKLAEL 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999874
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=9e-25 Score=162.90 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=117.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC-------------CcEEEEEEEeCCCCCCCh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN-------------KNICTLQITDTTGSHQFP 69 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~G~~~~~ 69 (200)
+...+||+++|+.|||||||++++..+.+...+.++.+..+ ...+.++ +..+.++||||+|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 45679999999999999999999999988888888887544 3334433 356889999999999999
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCC-------CCCCCcEEEEeeCCCCCcccc------cCH
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGAN-------ELASIPIMLVGNKCDETENRE------VSA 136 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~ivv~nK~Dl~~~~~------~~~ 136 (200)
.++..++.+++++|+|||+++..++..+..|+..+........ .....|++||+||+|+..... ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999887642100 013589999999999965431 245
Q ss_pred HHHHHHHHHhCC
Q psy8700 137 AEGEAEAKMWGC 148 (200)
Q Consensus 137 ~~~~~~~~~~~~ 148 (200)
.++..++...++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 678888888775
No 127
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=8.8e-25 Score=152.90 Aligned_cols=142 Identities=33% Similarity=0.425 Sum_probs=121.8
Q ss_pred CCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHh
Q psy8700 30 GTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETK 108 (200)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 108 (200)
+.|.+.|.||.+ ......+.+++..+.+.||||+|++++..++..+++++|++++|||++++.++..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 346677888887 4445667788888999999999999999999999999999999999999999999999988877654
Q ss_pred CCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 109 GGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 109 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
.+..|++||+||+|+.+...+...+...+....++.|+++||++|.|+.++|++|.+.+.+..
T Consensus 83 -----~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 -----GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred -----CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 256899999999999876666777777777788889999999999999999999999886543
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=8.2e-25 Score=153.99 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC-------CCCCcCCCcc------ccee-EE--EEe---CCcEEEEEEEeCCCCCCCh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGT-------FRESYIPTIE------DTYR-QV--ISC---NKNICTLQITDTTGSHQFP 69 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~------~~~~-~~--~~~---~~~~~~~~~~D~~G~~~~~ 69 (200)
+|+++|.+++|||||+++|++.. +...+.++.+ .+.. .. ... ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998732 1122322221 1111 11 112 5667889999999999999
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC- 148 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 148 (200)
.....++..+|++++|+|++++.+......|+.. .. .+.|+++|+||+|+.+... ......+....++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~--------~~~~iiiv~NK~Dl~~~~~--~~~~~~~~~~~~~~ 150 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE--------NNLEIIPVINKIDLPSADP--ERVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH--------cCCCEEEEEECCCCCcCCH--HHHHHHHHHHhCCC
Confidence 9999999999999999999987666665544422 11 3479999999999864321 1222344455555
Q ss_pred --cEEEecccCCCcHHHHHHHHHHHH
Q psy8700 149 --HFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 149 --~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.++++||++|.|++++|+++.+.+
T Consensus 151 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 151 PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 489999999999999999998765
No 129
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=7.7e-25 Score=166.60 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=115.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHh---hccccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQR---LSISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~---~~~~~~ 79 (200)
..|+++|.||||||||+++|+..... ..|..++-......+... ....+.+||+||..+ ...+.. .+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 56899999999999999999875432 122222222222233332 224689999999642 122333 355679
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
+++++|+|+++.++++.+..|...+..... ...+.|++||+||+|+.+...........+....+.+++++||+++.
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~---~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSP---ELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGE 314 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhh---hcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 999999999988788898888888877642 23568999999999997654433333333444556799999999999
Q ss_pred cHHHHHHHHHHHHhc
Q psy8700 160 NVKELFAELLNLEKN 174 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~ 174 (200)
|+++++++|.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.3e-24 Score=151.38 Aligned_cols=154 Identities=22% Similarity=0.215 Sum_probs=102.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCC-cccceeEEEEeCCcEEEEEEEeCCCCCCC----h-----hhHhhcccc
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNICTLQITDTTGSHQF----P-----AMQRLSISK 78 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~-----~~~~~~~~~ 78 (200)
+|+++|.+|+|||||+++|.+..+.....+. +... .........+.+.+|||||+... . .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL--FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce--eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999987653221111 1111 11112223478999999997421 0 111111223
Q ss_pred CCEEEEEeeCCChhHH--HHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 79 GHAFILVYSCTSRQSL--EELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
+|++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+...... ...+....+.+++++||+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~------~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF------KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc------CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEec
Confidence 6899999999987643 44445555554322 3689999999999976544322 334444456789999999
Q ss_pred CCCcHHHHHHHHHHHH
Q psy8700 157 TNHNVKELFAELLNLE 172 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~ 172 (200)
+|.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998865
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=4.5e-24 Score=149.42 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=115.5
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+....++|+++|++|||||||++++.+..+. .+.++.+.. ...+...+ ..+.+||+||+..+...+..+++.++++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 3456899999999999999999999986543 234444322 22333333 5789999999988888888899999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--------CcEEEec
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--------CHFMETS 154 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS 154 (200)
++|+|+.+..++.....++..+..... ....|+++++||+|+.+.... .+ .....+ .+++++|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~--~~---i~~~l~~~~~~~~~~~~~~~S 156 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEK----LAGVPVLVFANKQDLATAAPA--EE---IAEALNLHDLRDRTWHIQACS 156 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChh----hcCCCEEEEEECCCCccCCCH--HH---HHHHcCCcccCCCeEEEEEeE
Confidence 999999998888887777766654331 346899999999998653321 11 112222 1478999
Q ss_pred ccCCCcHHHHHHHHHH
Q psy8700 155 AKTNHNVKELFAELLN 170 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~ 170 (200)
|++|.|++++|+||.+
T Consensus 157 a~~~~gi~~~~~~l~~ 172 (173)
T cd04155 157 AKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999975
No 132
>KOG0073|consensus
Probab=99.93 E-value=2.9e-24 Score=142.01 Aligned_cols=164 Identities=19% Similarity=0.258 Sum_probs=126.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+++|+++|..||||||++++|.+.. .+...|+.+..... . .-..+.+.+||.+|+...++.|..||+.+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt-l--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT-L--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE-E--EecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 4569999999999999999999998855 34455555544333 2 234568999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH----HHHHHHHHHhCCcEEEecccCCC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA----AEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
+|+|.+|+.+++.....+..+..-. .....|++|++||.|+...-.... .....+.+...++++-||+.+|+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~ee----rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEE----RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhh----hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 9999999999888777776655432 245579999999999974322111 11223335556799999999999
Q ss_pred cHHHHHHHHHHHHhcc
Q psy8700 160 NVKELFAELLNLEKNR 175 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~ 175 (200)
++.+-++|+.+.+.++
T Consensus 165 ~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMSR 180 (185)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999877653
No 133
>KOG0070|consensus
Probab=99.93 E-value=3.6e-25 Score=149.85 Aligned_cols=164 Identities=19% Similarity=0.280 Sum_probs=131.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+.+|+++|-.+|||||++.+|..+..... .||.+...+.... .++.+++||.+|+++++.++..|+.+.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y---kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY---KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE---cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 45689999999999999999999998887555 8888876654332 3678999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHHhCCcEEEecccCCCc
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKMWGCHFMETSAKTNHN 160 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~~ 160 (200)
||+|.+|++++......+..+.... +....|+++.+||.|+++....... ............+..++|.+|+|
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~----~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEP----ELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCc----ccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999999988877776666555 2567899999999999876543222 22222222334688899999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy8700 161 VKELFAELLNLEKNR 175 (200)
Q Consensus 161 i~~~~~~i~~~~~~~ 175 (200)
+.+.++|+.+.+..+
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987543
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1e-24 Score=156.62 Aligned_cols=156 Identities=20% Similarity=0.240 Sum_probs=109.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC--hhh------Hh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQF--PAM------QR 73 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~------~~ 73 (200)
.++.++|+++|++|||||||++++++..+... +.++... ....+...+. ..+.+|||||.... ... ..
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 45678999999999999999999998763221 2222222 2222333332 37999999997431 111 11
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 153 (200)
..+..+|++++|+|++++.+......|...+.... ..+.|+++|+||+|+.+..... ......+.+++++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-----~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~ 185 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-----AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFI 185 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-----cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEE
Confidence 23568999999999999888877766666665543 2458999999999986644321 2333455689999
Q ss_pred cccCCCcHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNL 171 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~ 171 (200)
||+++.|+.+++++|.+.
T Consensus 186 Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 186 SAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EcCCCCCHHHHHHHHHhh
Confidence 999999999999999764
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=8.9e-24 Score=145.25 Aligned_cols=157 Identities=25% Similarity=0.383 Sum_probs=119.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|.+|||||||++++....+...+.++.+..+ ...+..++..+.+.+||+||+..+..++..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999886666666555433 33345566558899999999999998888889999999999
Q ss_pred eeCCCh-hHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 86 YSCTSR-QSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 86 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+... .++.... .+...+..... ...|+++++||.|+.... ........+......+++++||..+.|+.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-----SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-----cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence 998776 5555544 44444444442 268999999999997644 233334444445566899999999999999
Q ss_pred HHHHHH
Q psy8700 164 LFAELL 169 (200)
Q Consensus 164 ~~~~i~ 169 (200)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999864
No 136
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.7e-23 Score=142.65 Aligned_cols=154 Identities=45% Similarity=0.624 Sum_probs=119.3
Q ss_pred EECCCCCCHHHHHHHHhhCCC-CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC
Q psy8700 12 VFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS 90 (200)
Q Consensus 12 ~~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (200)
++|++|+|||||++++.+... .....++.................+.+||+||...+......++..+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4444455544444555555567899999999988888888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHHHhCCcEEEecccCCCcHHHHHHHHH
Q psy8700 91 RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAKMWGCHFMETSAKTNHNVKELFAELL 169 (200)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~ 169 (200)
+.+......++....... .....|+++++||+|+.......... ..........+++++|+..+.|+.+++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINK----EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhh----ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888743333333 24679999999999987655433322 3344555667999999999999999999875
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=6.8e-24 Score=158.24 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=105.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-h-------hHhhcccc
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-A-------MQRLSISK 78 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~-------~~~~~~~~ 78 (200)
+|+++|.||||||||+|+|++..... ....++..........+ ..++.+|||||..... . ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~--~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG--ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC--CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 69999999999999999999976532 22223222222222222 2479999999975431 1 23456788
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccC
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKT 157 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~ 157 (200)
+|++++|+|+++..+.. ..++..+.. ...|+++|+||+|+.+.... ......+....+. +++++||++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~--------~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN--------LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh--------cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCC
Confidence 99999999999876543 333333332 34799999999998643322 1222333333444 899999999
Q ss_pred CCcHHHHHHHHHHHHhccch
Q psy8700 158 NHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~~~~ 177 (200)
|.|++++++.+.+.+.+...
T Consensus 149 g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCCHHHHHHHHHHhCCCCCC
Confidence 99999999999998866543
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=8.2e-24 Score=146.68 Aligned_cols=153 Identities=16% Similarity=0.051 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC---CCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGT---FRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
-|+++|++|||||||+++|.+.. +...+.++.. ..........+ ...+.+|||||++++......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 48999999999999999998632 2222222211 11112222221 3579999999998887777778889999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHH---hCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKM---WGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~vSa~~~~ 159 (200)
|+|+++.... .....+..+.. . ...|+++++||+|+.+..... ..+....... .+.+++++||+++.
T Consensus 81 V~d~~~~~~~-~~~~~~~~~~~-~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMP-QTREHLEILEL-L------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccH-hHHHHHHHHHH-h------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 9999873211 11122222221 1 124899999999997543111 1122222222 35699999999999
Q ss_pred cHHHHHHHHHH
Q psy8700 160 NVKELFAELLN 170 (200)
Q Consensus 160 ~i~~~~~~i~~ 170 (200)
|++++++.+..
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=149.74 Aligned_cols=169 Identities=34% Similarity=0.457 Sum_probs=129.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||+++|..+.+...+.++....+ ..........+.+.+|||+|+++++.++..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888877444 34444444578899999999999999999999999999999
Q ss_pred eeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc------------cCHHHHHHHHHHh---CCc
Q psy8700 86 YSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMW---GCH 149 (200)
Q Consensus 86 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~---~~~ 149 (200)
+|..+.. +......|...+.... ....|+++++||+|+..... ............. ...
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~-----~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELA-----PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA 159 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhC-----CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc
Confidence 9999944 4555555665666544 24689999999999976532 1111112222222 335
Q ss_pred EEEeccc--CCCcHHHHHHHHHHHHhccchhHH
Q psy8700 150 FMETSAK--TNHNVKELFAELLNLEKNRNISLQ 180 (200)
Q Consensus 150 ~~~vSa~--~~~~i~~~~~~i~~~~~~~~~~~~ 180 (200)
++++|++ .+.++.++|..+.+.+........
T Consensus 160 ~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 160 LLETSAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred eeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 8999999 999999999999998865444333
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.8e-23 Score=145.56 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=105.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
.|+++|++|+|||||+++|....+.....+....... ..+... .....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 5899999999999999999987765443333222221 122222 13568999999999988888888899999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHH------HhCCcEEEecccCCC
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAK------MWGCHFMETSAKTNH 159 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~------~~~~~~~~vSa~~~~ 159 (200)
|+++....... ..+..+.. ...|+++|+||+|+.+........ ...+.. ...++++++|+++|.
T Consensus 82 d~~~~~~~~~~-~~~~~~~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA--------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH--------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99875322221 12222222 347999999999986432111111 111110 113589999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy8700 160 NVKELFAELLNLEK 173 (200)
Q Consensus 160 ~i~~~~~~i~~~~~ 173 (200)
|+.+++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988653
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=3.6e-24 Score=145.25 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=95.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC-----CChhhHhhccccCCEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH-----QFPAMQRLSISKGHAFI 83 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~~i 83 (200)
||+++|++|+|||||++++.+... .+.++. .+... ..+|||||.. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~------~~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQ------AVEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccce------eEEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 899999999999999999988654 222222 11111 2689999973 2333333 478999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVK 162 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~ 162 (200)
+|+|++++.++.. ..|.. .. . .|+++|+||+|+.+. .....+...+.+..+. +++++||++|.|++
T Consensus 68 lv~d~~~~~s~~~-~~~~~----~~------~-~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 68 LVQSATDPESRFP-PGFAS----IF------V-KPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred EEecCCCCCcCCC-hhHHH----hc------c-CCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 9999999988655 22221 11 1 399999999998653 2233444555556665 89999999999999
Q ss_pred HHHHHHH
Q psy8700 163 ELFAELL 169 (200)
Q Consensus 163 ~~~~~i~ 169 (200)
++|+++.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=4.5e-23 Score=156.84 Aligned_cols=160 Identities=21% Similarity=0.205 Sum_probs=112.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhhc---cccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRLS---ISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~ 79 (200)
..|+++|.||||||||+++|+..... ..|..++.......+.+++ ...+++||+||..+ ...+...+ +.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 57999999999999999999976532 1222222222222333332 35789999999642 22333333 4569
Q ss_pred CEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 80 HAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 80 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
+++++|+|+++. +.++.+..|...+..... .....|++||+||+|+.+.... ......+....+.+++++||+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~---~l~~kp~IIV~NK~DL~~~~~~-~~~~~~l~~~~~~~vi~iSAk 312 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP---ELAEKPRIVVLNKIDLLDEEEL-AELLKELKKALGKPVFPISAL 312 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhh---hhccCCEEEEEeCccCCChHHH-HHHHHHHHHHcCCcEEEEEcc
Confidence 999999999976 677888888777766542 2356899999999999765432 223344445557789999999
Q ss_pred CCCcHHHHHHHHHHHH
Q psy8700 157 TNHNVKELFAELLNLE 172 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~ 172 (200)
++.|+++++++|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=150.92 Aligned_cols=155 Identities=23% Similarity=0.236 Sum_probs=99.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCC-----------CCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS-----------HQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-----------~~~~~~~ 72 (200)
+...++|+++|.+|||||||+++|.+..+...+.++.... ...... . .+.+|||||. +.++..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDW--G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEee--c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3457899999999999999999999877644444433211 111211 1 5899999993 3444454
Q ss_pred hhccc----cCCEEEEEeeCCChhHH-H---------HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH
Q psy8700 73 RLSIS----KGHAFILVYSCTSRQSL-E---------ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE 138 (200)
Q Consensus 73 ~~~~~----~~~~~i~v~d~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 138 (200)
..++. .++++++|+|.++...+ . ....++..+.. .+.|+++|+||+|+.+.. ...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~p~iiv~NK~Dl~~~~---~~~ 149 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--------LGIPPIVAVNKMDKIKNR---DEV 149 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--------cCCCeEEEEECccccCcH---HHH
Confidence 44543 35788888887643211 0 00111222221 348999999999986543 222
Q ss_pred HHHHHHHhCC---------cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 139 GEAEAKMWGC---------HFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 139 ~~~~~~~~~~---------~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
...+....+. +++++||++| |+++++++|.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 3333444443 5899999999 9999999999977543
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=5.3e-23 Score=157.76 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=107.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-C-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--ChhhH------hh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-S-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--FPAMQ------RL 74 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~------~~ 74 (200)
+..++|+++|.+|+|||||+|+|++..... . ..+|. +.....+.+.+ ...+.+|||+|..+ ...+. ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~-d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL-DPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc-CCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHH
Confidence 456999999999999999999999875421 2 22333 33333444432 23789999999732 12211 22
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
.+.++|++++|+|++++.+......|...+.... ..+.|+++|+||+|+.+.... ... .....+++++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-----~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iS 333 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELG-----AEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVS 333 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-----cCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEE
Confidence 4778999999999999988777766665555543 245899999999998653221 111 11224689999
Q ss_pred ccCCCcHHHHHHHHHHH
Q psy8700 155 AKTNHNVKELFAELLNL 171 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~ 171 (200)
|++|.|++++++.|.+.
T Consensus 334 Aktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 334 AKTGEGLDLLLEAIAER 350 (351)
T ss_pred ccCCCCHHHHHHHHHhh
Confidence 99999999999998764
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.4e-23 Score=142.10 Aligned_cols=147 Identities=21% Similarity=0.295 Sum_probs=99.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCC------hhhHhhcc--cc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQF------PAMQRLSI--SK 78 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~ 78 (200)
++|+++|.||+|||||+|+|++........|... +.....+...+ ..+.++|+||.... ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999774322223222 22223444444 58999999995432 23334444 47
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN 158 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 158 (200)
.|++++|+|+++.+ .-..+...+.+ ...|+++++||+|....... ..+...+.+..++|++.+||+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e--------~g~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~pvi~~sa~~~ 146 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE--------LGIPVVVVLNKMDEAERKGI-EIDAEKLSERLGVPVIPVSARTG 146 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH--------TTSSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS-EEEEBTTTT
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH--------cCCCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCCEEEEEeCCC
Confidence 89999999998753 22233334443 33899999999998765543 23467777889999999999999
Q ss_pred CcHHHHHHHH
Q psy8700 159 HNVKELFAEL 168 (200)
Q Consensus 159 ~~i~~~~~~i 168 (200)
.|++++++.|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 9999999875
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=1.2e-22 Score=140.09 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=103.9
Q ss_pred EECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh------hHhhccc--cCCEE
Q psy8700 12 VFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA------MQRLSIS--KGHAF 82 (200)
Q Consensus 12 ~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~--~~~~~ 82 (200)
++|.+|+|||||++++.+........+... ......+..++ ..+.+|||||+..+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999988754333333322 22233444444 4789999999876543 3555564 89999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|..+++... .++..+.. ...|+++|+||+|+.+....... ...+....+.+++++||.++.|+.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~--------~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~ 146 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE--------LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGID 146 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH--------cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHH
Confidence 9999998764422 23322322 24799999999999765443322 345566678899999999999999
Q ss_pred HHHHHHHHHH
Q psy8700 163 ELFAELLNLE 172 (200)
Q Consensus 163 ~~~~~i~~~~ 172 (200)
++++++.+..
T Consensus 147 ~l~~~l~~~~ 156 (158)
T cd01879 147 ELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1e-22 Score=156.00 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=104.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhH-------hh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQ-------RL 74 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~-------~~ 74 (200)
...++|+++|.+|||||||+|+|++..+.. ....++.......+..++ .++.||||||+.. +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 455799999999999999999999877631 111111122223333443 4789999999753 22222 12
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEE
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFM 151 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 151 (200)
.+..+|++++|+|..+. +..... ++..+.. ...|.++|+||+|+.+. ...+........+ ..++
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~--------~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~ 194 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS--------LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLF 194 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh--------cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEE
Confidence 46789999999997653 334333 3333322 22577899999998643 1223333333333 4799
Q ss_pred EecccCCCcHHHHHHHHHHHHhccch
Q psy8700 152 ETSAKTNHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 152 ~vSa~~~~~i~~~~~~i~~~~~~~~~ 177 (200)
++||++|.|++++++++.+.+.+...
T Consensus 195 ~iSAktg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 195 PISALSGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred EEeccCccCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999998876553
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7.1e-23 Score=163.48 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=110.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----------ChhhH
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----------FPAMQ 72 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~ 72 (200)
...++|+++|.+|||||||+|+|++.... ..+..++.+.....+..++. .+.+|||||..+ +..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 35689999999999999999999987532 22222333333444555555 567999999532 22222
Q ss_pred -hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HH-HHHHHHhCC
Q psy8700 73 -RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EG-EAEAKMWGC 148 (200)
Q Consensus 73 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~-~~~~~~~~~ 148 (200)
..++.++|++++|+|++++.+..... ++..+.. ...|++||+||+|+.+....... +. ..+.....+
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 357 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWA 357 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCC
Confidence 23578999999999999988777753 3333332 34799999999999753221111 11 111222346
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhccchh
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKNRNIS 178 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~ 178 (200)
+++++||++|.|++++|+.+.+.+......
T Consensus 358 ~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 358 PRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999988655543
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.4e-22 Score=139.42 Aligned_cols=145 Identities=26% Similarity=0.297 Sum_probs=104.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh--------hHhhccc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA--------MQRLSIS 77 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~ 77 (200)
++|+++|++|+|||||++++.+.... .....+...........+ ...+.+|||||...... .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999986531 122222222222333333 35789999999765432 2334667
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT 157 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 157 (200)
.+|++++|+|++++.+......+.. ....|+++|+||+|+.+.... .....+.+++++||++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKT 141 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCC
Confidence 8999999999998776666444332 245899999999998765433 2334567999999999
Q ss_pred CCcHHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNLE 172 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~ 172 (200)
+.|+.+++++|.+.+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998754
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=8.9e-23 Score=143.09 Aligned_cols=159 Identities=21% Similarity=0.226 Sum_probs=105.1
Q ss_pred EECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----hh---hHhhccccCCEEE
Q psy8700 12 VFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----PA---MQRLSISKGHAFI 83 (200)
Q Consensus 12 ~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~---~~~~~~~~~~~~i 83 (200)
++|++|||||||+++|.+.... ..+..++.......+... ....+.+|||||.... .. .....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987541 222222222222223333 1347899999996321 11 2234567899999
Q ss_pred EEeeCCCh------hHHHHHHHHHHHHHHHhCC--CCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 84 LVYSCTSR------QSLEELRPIWEVIRETKGG--ANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 84 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
+|+|+.+. .++.....|...+...... .......|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 5677777776666543310 000135899999999999765543332222333445668999999
Q ss_pred cCCCcHHHHHHHHHHH
Q psy8700 156 KTNHNVKELFAELLNL 171 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~ 171 (200)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.7e-22 Score=139.02 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=98.7
Q ss_pred EEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh--------hHhhccccCC
Q psy8700 11 VVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA--------MQRLSISKGH 80 (200)
Q Consensus 11 ~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~ 80 (200)
+++|.+|+|||||+++|++... .....++...........++ ..+.+|||||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998642 22222222222223333333 5799999999887543 3345677899
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCC
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNH 159 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 159 (200)
++++|+|..++.+.... .+...+.. ...|+++|+||+|+.+.... .......+. +++++|++++.
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~--------~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~ 144 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK--------SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGR 144 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh--------cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCC
Confidence 99999999876543332 22222322 23899999999998764432 122233455 88999999999
Q ss_pred cHHHHHHHHHHH
Q psy8700 160 NVKELFAELLNL 171 (200)
Q Consensus 160 ~i~~~~~~i~~~ 171 (200)
|+.++++++.+.
T Consensus 145 gv~~l~~~l~~~ 156 (157)
T cd01894 145 GIGDLLDAILEL 156 (157)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.8e-22 Score=157.86 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=107.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 75 (200)
..+||+++|++|+|||||+|+|++... ...+..++.+.....+..++ ..+.+|||||+...... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998642 23333333333344455554 46789999998654322 2457
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
+.++|++++|+|++++.+.... |+..+.. ...|+++|+||+|+... + ...+....+.+++.+||
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--------~~~piIlV~NK~Dl~~~-~-----~~~~~~~~~~~~~~vSa 343 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--------SKKPFILVLNKIDLKIN-S-----LEFFVSSKVLNSSNLSA 343 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--------CCCCEEEEEECccCCCc-c-----hhhhhhhcCCceEEEEE
Confidence 7899999999999988776654 4433321 34799999999998643 1 12334556778999999
Q ss_pred cCCCcHHHHHHHHHHHHhcc
Q psy8700 156 KTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~~ 175 (200)
++ .||.++|+.+.+.+.+.
T Consensus 344 k~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 344 KQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ec-CCHHHHHHHHHHHHHHH
Confidence 97 68999999888877543
No 153
>KOG0075|consensus
Probab=99.90 E-value=1.1e-23 Score=136.74 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=128.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+..+.++|-.+||||||+|....+.+.+.-.|+.+...+.. ....+.+.+||.||+..+++.+..|++.++++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~---tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe---ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 46789999999999999999988888778888887766553 445678999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH-----HHHhCCcEEEecccCCCcH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE-----AKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i 161 (200)
|+.+++.....+..+..+..... ...+|++|++||.|+++.-. ....... .....+..|.+|+++..||
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~----l~gip~LVLGnK~d~~~AL~--~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPS----LTGIPLLVLGNKIDLPGALS--KIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchh----hcCCcEEEecccccCccccc--HHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 99999888887777777776663 67899999999999876432 2222211 1222346899999999999
Q ss_pred HHHHHHHHHHHh
Q psy8700 162 KELFAELLNLEK 173 (200)
Q Consensus 162 ~~~~~~i~~~~~ 173 (200)
+-+.+|+++...
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999998654
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=3.7e-22 Score=142.24 Aligned_cols=146 Identities=20% Similarity=0.174 Sum_probs=97.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh--CCCCCCcC------------CCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhH
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK--GTFRESYI------------PTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQ 72 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 72 (200)
-+|+++|.+++|||||+++|+. +.+...+. ++.+.+. .....++.....+.+|||||++++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 44433321 0111111 1223344456789999999999999999
Q ss_pred hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc-CHHHHHHHHH-------
Q psy8700 73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV-SAAEGEAEAK------- 144 (200)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~------- 144 (200)
..+++.+|++++|+|+++.. ......++..+.. ...|+++++||+|+...... ...+...+..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998742 2222333332222 34799999999998653321 1122222221
Q ss_pred HhCCcEEEecccCCCcHH
Q psy8700 145 MWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 145 ~~~~~~~~vSa~~~~~i~ 162 (200)
..+++++++||++|.|+.
T Consensus 154 ~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 154 QLDFPVLYASAKNGWASL 171 (194)
T ss_pred cCccCEEEeehhcccccc
Confidence 236789999999997753
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=3.4e-22 Score=158.23 Aligned_cols=148 Identities=25% Similarity=0.294 Sum_probs=107.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 75 (200)
..++|+++|.+|+|||||+|+|++... ...+..++.+.....+..++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998653 22222333333344444544 46899999998654332 2346
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
+.++|++++|+|++++.+......|.. ..+.|+++|+||+|+.+..... ...+.+++++||
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-----------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSA 352 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-----------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISA 352 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-----------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEe
Confidence 788999999999998877665433221 1447999999999996543221 334568999999
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q psy8700 156 KTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~ 174 (200)
++|.|++++++++.+.+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998754
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=5e-22 Score=140.78 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=106.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc-------------cc-cee-EEEEeCCcEEEEEEEeCCCCCCChhhHh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-------------ED-TYR-QVISCNKNICTLQITDTTGSHQFPAMQR 73 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~-------------~~-~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 73 (200)
+|+++|.+|||||||+++|.+........... .. +.. .....+.....+.+|||||...+.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999998876543322211 00 111 1112222346899999999998888888
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HHHHHHHH------
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EGEAEAKM------ 145 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~------ 145 (200)
.++..+|++++|+|..++..... ..++..+.. ...|+++++||+|+......... ......+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 89999999999999987654333 233322222 34899999999999763322211 11111111
Q ss_pred --------hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 146 --------WGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 146 --------~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
...+++++||+.|.|+.++++++.+.+.
T Consensus 152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3468999999999999999999998763
No 157
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=7.8e-22 Score=136.81 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=100.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh--------hHhhcccc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA--------MQRLSISK 78 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 78 (200)
..+|+++|++|+|||||++++.+...........................+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999865422111111111111122233456899999999765432 23345778
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccC
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKT 157 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~ 157 (200)
+|++++|+|.+++.. .....+...+.. .+.|+++++||+|+....+........+.... ..+++++|+++
T Consensus 83 ~d~i~~v~d~~~~~~-~~~~~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 83 VDLVLFVVDASEPIG-EGDEFILELLKK--------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred CCEEEEEEECCCccC-chHHHHHHHHHH--------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 999999999998722 111222222322 23799999999999743322222223333333 35899999999
Q ss_pred CCcHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNL 171 (200)
Q Consensus 158 ~~~i~~~~~~i~~~ 171 (200)
+.|+.++++.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 158
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=9e-22 Score=156.15 Aligned_cols=161 Identities=21% Similarity=0.235 Sum_probs=107.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-----------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM----------- 71 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------- 71 (200)
...++|+++|.+|+|||||+|+|++... ...+..++.+.....+..++. .+.+|||||..+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 3468999999999999999999998652 122222322333334444444 7899999997543321
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH----HhC
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK----MWG 147 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~ 147 (200)
...++..+|++++|+|++++.+..+.. ++..+.. ...|+++|+||+|+.+..+........... ..+
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 318 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDF 318 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCC
Confidence 134678899999999999887766543 3333322 337999999999997211111111111111 124
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
++++++||++|.|+.++|+++.+.+....
T Consensus 319 ~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 319 APIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999876544
No 159
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.6e-21 Score=152.08 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=110.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhhc---cccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRLS---ISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~ 79 (200)
..|+++|.||||||||+++|++..... .|..++-......+..+ ....+.+||+||... ...+...+ ++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 379999999999999999999865321 11111111111122222 134799999999642 22344444 4568
Q ss_pred CEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 80 HAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 80 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
+++++|+|+++. +.+.++..|...+..... .....|++||+||+|+.+. ......+....+.+++++||+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~---~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~ 310 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP---RLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISAL 310 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhch---hccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCC
Confidence 999999999864 567777777777776542 2356899999999998432 223344455556789999999
Q ss_pred CCCcHHHHHHHHHHHHhccc
Q psy8700 157 TNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~~~ 176 (200)
++.|+++++++|.+.+.+..
T Consensus 311 tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 311 TGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999886543
No 160
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.9e-22 Score=132.72 Aligned_cols=116 Identities=35% Similarity=0.515 Sum_probs=86.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
||+|+|++|||||||+++|.+..+. ....+..+..+ ............+.+||++|.+.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998875 12222233222 23445566666799999999988877777779999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
||++++.++..+..+...+..... ...+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~---~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK---RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH---HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc---cCCCCCEEEEEeccC
Confidence 999999999998777555555442 135699999999998
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=7.3e-22 Score=157.70 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=105.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCC--------ChhhHh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ--------FPAMQR 73 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~ 73 (200)
.....+|+++|.+|||||||+|+|++.... ....+... +.........+. .+.+|||||.+. +.....
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 345689999999999999999999986532 11222221 122223333343 688999999763 233455
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEE
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFME 152 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (200)
.++..+|++++|+|++++.+... ..+...+.. ...|+++|+||+|+.... ......+ ..+. .+++
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--------~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~ 178 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAVARVLRR--------SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHP 178 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEE
Confidence 67889999999999998765443 334443432 348999999999986422 1111122 2343 4579
Q ss_pred ecccCCCcHHHHHHHHHHHHhc
Q psy8700 153 TSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+||++|.|+.++|+++.+.+.+
T Consensus 179 iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 179 VSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEcCCCCCcHHHHHHHHhhccc
Confidence 9999999999999999998754
No 162
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.4e-21 Score=139.40 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=103.9
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC----------CChhhH
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH----------QFPAMQ 72 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~ 72 (200)
..+..++|+++|.+|+|||||++++++..+...+.++.+.+....... ....+.+|||||.. .+..+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 356779999999999999999999998764444444443332222111 12579999999953 223344
Q ss_pred hhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HHHHHHHHhC
Q psy8700 73 RLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EGEAEAKMWG 147 (200)
Q Consensus 73 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~ 147 (200)
..++.. .+++++++|..++...... .++..+.. ...|+++++||+|+.+..+.... ..........
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 444544 3678888887765433221 12222221 34789999999998764432221 1222222235
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.+++++||+++.|++++++.|.+.+++
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 789999999999999999999887754
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=2.7e-21 Score=151.54 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=107.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--ChhhHhh------c
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--FPAMQRL------S 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~------~ 75 (200)
...+|+++|.+|||||||+|+|++...... ...|. +.....+...+. ..+.+|||+|..+ ...++.. .
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTl-d~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATL-DPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCc-CCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 346899999999999999999998654221 12222 222223333332 2578999999743 2333332 3
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc-EEEec
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETS 154 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vS 154 (200)
+..+|++++|+|++++.+...+..+...+.... ..+.|+++|+||+|+.+... ... . ....+.+ ++.+|
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-----~~~~pvIiV~NKiDL~~~~~-~~~---~-~~~~~~~~~v~IS 343 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEID-----AHEIPTLLVMNKIDMLDDFE-PRI---D-RDEENKPIRVWLS 343 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-----cCCCCEEEEEEcccCCCchh-HHH---H-HHhcCCCceEEEe
Confidence 578999999999999988777766666555544 24689999999999864321 111 1 1123454 58899
Q ss_pred ccCCCcHHHHHHHHHHHHhc
Q psy8700 155 AKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~ 174 (200)
|++|.|+++++++|.+.+..
T Consensus 344 AktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999998753
No 164
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=1.6e-21 Score=147.28 Aligned_cols=160 Identities=20% Similarity=0.210 Sum_probs=103.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--------hhHhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP--------AMQRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~ 75 (200)
....|+++|++|||||||+|+|++...... ...++......... ....++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~--~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT--EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE--cCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 356799999999999999999998765321 11111111111222 223689999999976532 223346
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEec
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETS 154 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS 154 (200)
+..+|++++|+|+++.... .....+..+. ..+.|+++|+||+|+.............+....+ .+++++|
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~--------~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK--------KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh--------hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 6789999999999883221 1122222222 1347999999999997432222222333333333 5899999
Q ss_pred ccCCCcHHHHHHHHHHHHhccc
Q psy8700 155 AKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~~ 176 (200)
|+++.|+.++++++.+.+.+..
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999876543
No 165
>KOG0071|consensus
Probab=99.88 E-value=3.9e-22 Score=128.64 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=124.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
+++++|+++|-.++||||++.+|..... ....||.++..+.. .-+++.+.+||.+|++..+.+|++|+....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetV---tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV---TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEE---EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 5689999999999999999999987553 45566666554432 2346789999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHH--HhCCcEEEecccCCCcH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAK--MWGCHFMETSAKTNHNV 161 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~--~~~~~~~~vSa~~~~~i 161 (200)
|+|..+.+.++..+..+..+.... +..+.|++|.+||.|+++.+...+.. ..++.. .....+.++++.+|+++
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~----em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDR----EMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGL 166 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCH----hhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhH
Confidence 999999888777766665555444 46788999999999998765332211 111222 22346788999999999
Q ss_pred HHHHHHHHHHHh
Q psy8700 162 KELFAELLNLEK 173 (200)
Q Consensus 162 ~~~~~~i~~~~~ 173 (200)
.+-|.|+.+.+.
T Consensus 167 ~eglswlsnn~~ 178 (180)
T KOG0071|consen 167 KEGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHHhhcc
Confidence 999999998764
No 166
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.7e-21 Score=149.95 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=110.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hhHhhccccCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AMQRLSISKGH 80 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~ 80 (200)
.|+|+|.||||||||+|+|++..... .+..|+-......+...+ ...+.|+||||..... ......+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 79999999999999999999755311 122222222222333322 2358999999965321 11223577899
Q ss_pred EEEEEeeCC---ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEEEecc
Q psy8700 81 AFILVYSCT---SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETSA 155 (200)
Q Consensus 81 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa 155 (200)
++++|+|++ +.+.+..+..|...+..... .....|++||+||+|+.+..+.. .....+....+ .+++.+||
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~---~L~~kP~IlVlNKiDl~~~~el~-~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSP---KLAEKPRWLVFNKIDLLDEEEAE-ERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhh---hhcCCCEEEEEeCCccCChHHHH-HHHHHHHHHhCCCCCEEEEEC
Confidence 999999988 45567777777777766542 23458999999999997544321 22233333333 37899999
Q ss_pred cCCCcHHHHHHHHHHHHhccc
Q psy8700 156 KTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+++.|+.++++.|.+.+.+..
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhCc
Confidence 999999999999999886543
No 167
>KOG3883|consensus
Probab=99.88 E-value=9.9e-21 Score=123.98 Aligned_cols=166 Identities=27% Similarity=0.339 Sum_probs=142.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCC-hhhHhhccccCCE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQF-PAMQRLSISKGHA 81 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~~ 81 (200)
...|+++.|..++|||+++..++.++ ....+.||+++++...+..+ +..-++.++||.|...+ ..+-.+|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 46799999999999999999998655 34567888888887766554 33358999999997766 7788899999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|++..+++||+.+..+...+.... +....|++|++||.|+.++.+....-+..+++.-.+..+++++.+...+
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~K----dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHK----DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhcc----ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 999999999999999998888888766 4678999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy8700 162 KELFAELLNLEKNR 175 (200)
Q Consensus 162 ~~~~~~i~~~~~~~ 175 (200)
-+-|-.+...+...
T Consensus 164 ~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 164 YEPFTYLASRLHQP 177 (198)
T ss_pred hhHHHHHHHhccCC
Confidence 99999888876443
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3.7e-21 Score=134.35 Aligned_cols=154 Identities=22% Similarity=0.241 Sum_probs=100.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-----------hhHh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-----------AMQR 73 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~ 73 (200)
.++|+++|.+|+|||||++++++.... .....+...........++. .+.+|||||..... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 689999999999999999999886532 11111221222233333443 57899999965431 1112
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHHHh----CC
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAKMW----GC 148 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~ 148 (200)
..+..+|++++|+|..++.+.... .++..+.. ...|+++++||+|+.+........ ........ ..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE--------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCC
Confidence 356689999999999988765443 22222221 347999999999987653211111 12222222 36
Q ss_pred cEEEecccCCCcHHHHHHHHHHH
Q psy8700 149 HFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
+++++||+++.|+.++++.+.+.
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHHh
Confidence 89999999999999999998764
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.7e-21 Score=152.61 Aligned_cols=166 Identities=21% Similarity=0.251 Sum_probs=108.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhH---hhccccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQ---RLSISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~---~~~~~~~ 79 (200)
..|+|+|.||||||||+|+|++..... .|..++-......+...+ ..+.+||+||... ...+. ...+.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 679999999999999999999754321 122222122222333333 5799999999642 11222 2245679
Q ss_pred CEEEEEeeCCC----hhHHHHHHHHHHHHHHHhCCC------CCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc
Q psy8700 80 HAFILVYSCTS----RQSLEELRPIWEVIRETKGGA------NELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH 149 (200)
Q Consensus 80 ~~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 149 (200)
+++++|+|+++ ++.+.++..+...+..+.... ......|++||+||+|+.+..+...... ......+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~-~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVR-PELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHH-HHHHHcCCe
Confidence 99999999975 234556666555555443100 0134689999999999975443222211 122334679
Q ss_pred EEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 150 FMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 150 ~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
++++||+++.|+++++++|.+.+....
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999886544
No 170
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.5e-21 Score=142.19 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=111.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCCCh--------hhHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQFP--------AMQRL 74 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~~--------~~~~~ 74 (200)
-...-|+++|.||+|||||+|++++.+. ...+..+.+++..+ .......++.|+||||..... .....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 3456799999999999999999999876 33333343333211 122335699999999966543 23344
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEe
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMET 153 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~v 153 (200)
.+..+|+++||+|++++....+ ...++.+.. .+.|+++++||+|...+..........+..... ..++++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~--------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGD-EFILEQLKK--------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred HhccCcEEEEEEeccccCCccH-HHHHHHHhh--------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence 5667899999999987543322 222233332 237999999999988766521222222222333 389999
Q ss_pred cccCCCcHHHHHHHHHHHHhccchhH
Q psy8700 154 SAKTNHNVKELFAELLNLEKNRNISL 179 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 179 (200)
||+.|.|++.+.+.+...+.+...-.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCCcC
Confidence 99999999999999999987665433
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=2.4e-21 Score=137.87 Aligned_cols=157 Identities=19% Similarity=0.130 Sum_probs=98.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC----CCCCCcC-----CCcccce-eEEEE----------eCCcEEEEEEEeCCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG----TFRESYI-----PTIEDTY-RQVIS----------CNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~----~~~~~~~-----~~~~~~~-~~~~~----------~~~~~~~~~~~D~~G~~~ 67 (200)
++|+++|++++|||||+++|+.. .+...+. .+....+ ...+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 1111111 1111111 11111 123357899999999865
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH--HHHH-HHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA--AEGE-AEAK 144 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~-~~~~ 144 (200)
+..........+|++++|+|+.+.........+. +... ...|+++++||+|+........ .+.. .+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 4333333455679999999998754333322222 1111 2369999999999864332111 1111 1111
Q ss_pred ------HhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 145 ------MWGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 145 ------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
..+++++++||++|.|+.++++.+.+.+.
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999988764
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=2.2e-21 Score=133.63 Aligned_cols=141 Identities=20% Similarity=0.142 Sum_probs=95.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh----hhHhhccccCCEEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP----AMQRLSISKGHAFIL 84 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~~~~~~~~i~ 84 (200)
+|+++|.+|+|||||+|+|.+... ...++ ..+..... .+|||||..... ......+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999876431 11111 11122222 269999973222 222234678999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC--cEEEecccCCCcHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC--HFMETSAKTNHNVK 162 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~vSa~~~~~i~ 162 (200)
|+|+++..++.. .|. .... ...|+++++||+|+.+.. ......+....+. +++++||++|.|+.
T Consensus 71 v~d~~~~~s~~~--~~~---~~~~------~~~~ii~v~nK~Dl~~~~---~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~ 136 (158)
T PRK15467 71 VHGANDPESRLP--AGL---LDIG------VSKRQIAVISKTDMPDAD---VAATRKLLLETGFEEPIFELNSHDPQSVQ 136 (158)
T ss_pred EEeCCCcccccC--HHH---Hhcc------CCCCeEEEEEccccCccc---HHHHHHHHHHcCCCCCEEEEECCCccCHH
Confidence 999998866422 222 2211 347899999999986522 2333444555554 89999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|+.+.+.+.+.
T Consensus 137 ~l~~~l~~~~~~~ 149 (158)
T PRK15467 137 QLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHHhchhh
Confidence 9999998877443
No 173
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=6.4e-21 Score=155.11 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=113.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC-------CCCCcCCCc------cccee-EEEEe-----CCcEEEEEEEeCCCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT-------FRESYIPTI------EDTYR-QVISC-----NKNICTLQITDTTGSHQF 68 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~-------~~~~~~~~~------~~~~~-~~~~~-----~~~~~~~~~~D~~G~~~~ 68 (200)
-+|+++|.+++|||||+++|+... +...+..+. +-+.. ..+.+ ++..+.+.||||||+..+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998642 122222221 11111 11111 466789999999999999
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC 148 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 148 (200)
......++..+|++++|+|++++.+.+....|+.... .+.|+++|+||+|+.+... ......+....++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---------~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~ 152 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---------NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---------cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCC
Confidence 9999999999999999999998776666665554332 2379999999999864321 1222334444555
Q ss_pred ---cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 149 ---HFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 149 ---~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
.++++||++|.|+.++|+.|.+.+...
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 489999999999999999999987543
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=2.5e-21 Score=136.28 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=94.3
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEeCCcEEEEEEEeCCCCCC----------Chhh
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQITDTTGSHQ----------FPAM 71 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~G~~~----------~~~~ 71 (200)
++...++|+++|++|+|||||+|++.+..+...+.++.+.+... ....++ .+.+|||||... +..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 46788999999999999999999999875333333333333222 222232 689999999532 2333
Q ss_pred Hhhccc---cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHHh
Q psy8700 72 QRLSIS---KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKMW 146 (200)
Q Consensus 72 ~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~ 146 (200)
...++. .++++++|+|.+++-+.... .++..+.. ...|+++++||+|+....+.. ..+........
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 334544 35799999999875544443 22333322 347999999999987543221 12222223333
Q ss_pred C--CcEEEecccCCCcHH
Q psy8700 147 G--CHFMETSAKTNHNVK 162 (200)
Q Consensus 147 ~--~~~~~vSa~~~~~i~ 162 (200)
+ .+++++||++|.|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 2 489999999999873
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=6.1e-21 Score=136.76 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=77.1
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV 134 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 134 (200)
..+.||||||++.+.......+..+|++++|+|++++.........+..+.. . ...|++|++||+|+.+....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~------~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-M------GLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-c------CCCcEEEEEEchhccCHHHH
Confidence 6799999999888777777778889999999999874211122222322322 2 22479999999999753321
Q ss_pred CH--HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 135 SA--AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 135 ~~--~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.. .....+... .+++++++||++|.|++++++.+.+.+.+
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 11 111222222 25689999999999999999999886644
No 176
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.4e-20 Score=156.81 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=109.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----------Chhh-
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----------FPAM- 71 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~- 71 (200)
+..++|+++|.+|||||||+|+|++... ...+.+++.+.....+..++. .+.+|||||..+ +..+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 3568999999999999999999998763 233333333444444455555 567999999642 1111
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----hC
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----WG 147 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~ 147 (200)
....+..+|++++|+|++++.+..... ++..+.. ...|+++|+||+|+.+........ ...... ..
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~--------~~~piIiV~NK~DL~~~~~~~~~~-~~~~~~l~~~~~ 595 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD--------AGRALVLVFNKWDLMDEFRRQRLE-RLWKTEFDRVTW 595 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--------cCCCEEEEEEchhcCChhHHHHHH-HHHHHhccCCCC
Confidence 123467899999999999987777654 3333332 337999999999997533211111 111111 23
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
.+++.+||++|.|+.++++.+.+.+.+..
T Consensus 596 ~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 596 ARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999887643
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.6e-20 Score=148.00 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=101.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--------ChhhHhhccc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--------FPAMQRLSIS 77 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 77 (200)
.+|+++|.+|||||||+|+|.+... ...+...+.+........++ ..+.+|||||... .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998653 12222222222333344444 5899999999876 2334455778
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEeccc
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAK 156 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~ 156 (200)
.+|++++|+|..++.+.... .....+.. ...|+++|+||+|+.+.. .....+ ...++ .++++||+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~--------~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~ 145 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE-EIAKILRK--------SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAE 145 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHH--------cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEee
Confidence 99999999999875433321 12222332 237999999999965421 112222 34455 58999999
Q ss_pred CCCcHHHHHHHHHHHH
Q psy8700 157 TNHNVKELFAELLNLE 172 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~ 172 (200)
+|.|+.++++.+....
T Consensus 146 ~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 146 HGRGIGDLLDAILEEL 161 (435)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998833
No 178
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=2.6e-20 Score=133.32 Aligned_cols=121 Identities=14% Similarity=0.257 Sum_probs=89.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC-CEEEEEee
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYS 87 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~~i~v~d 87 (200)
+|+++|++|||||||+++|..+.+...+.++.+..........+....+.+||+||+.+++.....++..+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999987766554443322222222223456799999999999988888899998 99999999
Q ss_pred CCCh-hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 88 CTSR-QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
..+. .++.....++..+...... ..+..|++|++||.|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~--~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEK--VKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhh--ccCCCCEEEEecchhhccc
Confidence 9987 6677766666554332210 1256899999999998643
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=4.6e-20 Score=149.51 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=106.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+|+++|.+++|||||+++|.+..+...+.+...... ...+..++. ..+.||||||++.+..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3568999999999999999999998776554443333222 222333222 27899999999999999988899999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHH---HHHHhC--CcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEA---EAKMWG--CHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~---~~~~~~--~~~~~vSa~~ 157 (200)
+|+|+++....+.... +..+. ..+.|+++++||+|+.+...... ..... ....++ .+++++||++
T Consensus 164 LVVda~dgv~~qT~e~-i~~~~--------~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA-ISHAK--------AANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEECCCCCCHhHHHH-HHHHH--------HcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9999987543233222 22221 24489999999999865321000 01100 111222 4799999999
Q ss_pred CCcHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLN 170 (200)
Q Consensus 158 ~~~i~~~~~~i~~ 170 (200)
|.|+.++++++..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999999875
No 180
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.6e-20 Score=129.18 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=102.1
Q ss_pred EECCCCCCHHHHHHHHhhCCCC-C-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hhHhhccccCCEE
Q psy8700 12 VFGAGGVGKSSLVLRFVKGTFR-E-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AMQRLSISKGHAF 82 (200)
Q Consensus 12 ~~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~~~ 82 (200)
++|++|||||||++++.+.... . ...++............ ....+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876542 1 12222222223332222 14579999999976543 3444578899999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHHhCCcEEEecccCCC
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
++++|..+........ +..... ....|+++|+||+|+......... .........+.+++++|+.++.
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~--------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR--------ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH--------hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence 9999999887666654 222222 245899999999998765433222 1122333456799999999999
Q ss_pred cHHHHHHHHHHH
Q psy8700 160 NVKELFAELLNL 171 (200)
Q Consensus 160 ~i~~~~~~i~~~ 171 (200)
|+.++++++.+.
T Consensus 151 ~v~~l~~~l~~~ 162 (163)
T cd00880 151 GIDELREALIEA 162 (163)
T ss_pred CHHHHHHHHHhh
Confidence 999999999874
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.9e-20 Score=148.73 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=105.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC-CCCcCC-CcccceeEEEEeCCcEEEEEEEeCCCCCCChh-----------h
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF-RESYIP-TIEDTYRQVISCNKNICTLQITDTTGSHQFPA-----------M 71 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~ 71 (200)
...++|+++|.+|+|||||+|+|++... .....+ ++..........++ ..+.+|||||...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 4579999999999999999999997542 111111 11122222223333 4688999999643221 1
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCC
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGC 148 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~ 148 (200)
...++..+|++++|+|++++.+..+. .++..+.. ...|+++++||+|+.+........ ...+.....+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 319 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE--------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYA 319 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH--------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCC
Confidence 12367789999999999988766554 33333332 237999999999997432211111 1111122346
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+++++||++|.|+.++++.+.+.+....
T Consensus 320 ~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 320 PIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988776543
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=3.6e-20 Score=147.02 Aligned_cols=150 Identities=20% Similarity=0.260 Sum_probs=103.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--------ChhhHhhcccc
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--------FPAMQRLSISK 78 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 78 (200)
+|+++|.+|||||||+|+|.+... ...+...+.+........++. .+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 112222222222333334444 699999999642 23455667889
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccC
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKT 157 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~ 157 (200)
+|++++|+|..++.+... ..+...+.+ ...|+++|+||+|+.+.... ... ....++ +++++||.+
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~--------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~ 144 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK--------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEH 144 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH--------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCc
Confidence 999999999987544333 223333333 23799999999998654321 112 234566 899999999
Q ss_pred CCcHHHHHHHHHHHHhc
Q psy8700 158 NHNVKELFAELLNLEKN 174 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~ 174 (200)
|.|+.++++.+.+.+.+
T Consensus 145 g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 145 GRGIGDLLDAILELLPE 161 (429)
T ss_pred CCChHHHHHHHHHhcCc
Confidence 99999999999988754
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=3e-20 Score=152.81 Aligned_cols=159 Identities=19% Similarity=0.283 Sum_probs=110.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc---cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE---DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
.....|+++|.+++|||||+++|....+.....+... ..+......++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3567999999999999999999988665433332222 1222223333456789999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHH---HHHHhC--CcEEEecc
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEA---EAKMWG--CHFMETSA 155 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~---~~~~~~--~~~~~vSa 155 (200)
+++|+|++++...+.... +..+. ....|++|++||+|+.+...... ..... ....++ ++++++||
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~k--------~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYIQ--------AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHHH--------hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999987543333222 22221 24489999999999865321100 01111 112233 58999999
Q ss_pred cCCCcHHHHHHHHHHHH
Q psy8700 156 KTNHNVKELFAELLNLE 172 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~ 172 (200)
++|.|+.++++.+....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998764
No 184
>KOG0076|consensus
Probab=99.85 E-value=3e-21 Score=129.04 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=122.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC---CCC----cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcccc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTF---RES----YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK 78 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 78 (200)
..+-++++|..+||||||+.++..... ... ..++.+ -...++.+. ...+.+||.+|++..++++..|+..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg-Lnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG-LNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc-eeecceeec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 457899999999999999998865321 111 111111 111122333 4488999999999999999999999
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH-HHH---hCCcEEEec
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE-AKM---WGCHFMETS 154 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~---~~~~~~~vS 154 (200)
++++|+++|+++++.++.....+..+...- .....|+++.+||.|+.+..+..+.....- +.. ..+++.+||
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E----~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENE----KLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHH----HhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence 999999999999999999888887776665 367899999999999987665443332111 122 235899999
Q ss_pred ccCCCcHHHHHHHHHHHHhcc
Q psy8700 155 AKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~ 175 (200)
|..|.||++-.+|+...+...
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999988654
No 185
>KOG1673|consensus
Probab=99.85 E-value=1.4e-20 Score=123.61 Aligned_cols=162 Identities=23% Similarity=0.391 Sum_probs=136.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
++||.++|++..|||||+-++.++.+.+.+..+.+ ....+++...+..+.+.+||.+|++++....+....++-+++|.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 58999999999999999999999998877777777 55567888899999999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-----cccCHHHHHHHHHHhCCcEEEecccCCCc
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-----REVSAAEGEAEAKMWGCHFMETSAKTNHN 160 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~ 160 (200)
||++.+.++..+..|+.......+ ..+| ++|++|.|+.=. .+.....+..+++..+++.|.+|+..+-|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~Nk-----tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNK-----TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCC-----ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999988777663 3344 678999996321 11122345667888899999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy8700 161 VKELFAELLNLEKN 174 (200)
Q Consensus 161 i~~~~~~i~~~~~~ 174 (200)
+.++|+.+...+..
T Consensus 174 v~KIFK~vlAklFn 187 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998887754
No 186
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.5e-20 Score=141.50 Aligned_cols=148 Identities=21% Similarity=0.256 Sum_probs=104.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE----EEEeCCcEEEEEEEeCCCCCCC---------hhhHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ----VISCNKNICTLQITDTTGSHQF---------PAMQRL 74 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~ 74 (200)
..|+++|.||+|||||+|||++... ......++.++. .....+. .+.++||+|.+.. ..+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 5799999999999999999999764 444444444433 3333333 5999999997742 235556
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEe
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMET 153 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v 153 (200)
.+..||+++||+|...+-+-.+ ......+.. .+.|+++|+||+|... ..........+|+ .++.+
T Consensus 80 Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr~--------~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~I 145 (444)
T COG1160 80 AIEEADVILFVVDGREGITPAD-EEIAKILRR--------SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPI 145 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh--------cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEe
Confidence 7778999999999987544333 233333332 3389999999999642 1122222334455 89999
Q ss_pred cccCCCcHHHHHHHHHHHHh
Q psy8700 154 SAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~ 173 (200)
||.+|.|+.++++.+...+.
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ehhhccCHHHHHHHHHhhcC
Confidence 99999999999999999873
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=2.9e-20 Score=131.77 Aligned_cols=158 Identities=22% Similarity=0.200 Sum_probs=105.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCCc---------CCC-----cccce-eEEEEeC--CcEEEEEEEeCCCCCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESY---------IPT-----IEDTY-RQVISCN--KNICTLQITDTTGSHQ 67 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~---------~~~-----~~~~~-~~~~~~~--~~~~~~~~~D~~G~~~ 67 (200)
..+|+++|+.++|||||+.+|+...- .... ... ...+. ....... .....+.++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 57899999999999999999985331 1100 000 00001 1122222 4557999999999988
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH--HHHHHHHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA--AEGEAEAKM 145 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~ 145 (200)
+.......+..+|++++|+|+.++..... ...+..+.. .+.|++|++||+|+....-... .....+.+.
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~ 153 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKE 153 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHH
T ss_pred eeecccceecccccceeeeeccccccccc-ccccccccc--------cccceEEeeeeccchhhhHHHHHHHHHHHhccc
Confidence 88888888999999999999987644333 344444444 3378999999999973221111 111122222
Q ss_pred h------CCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 146 W------GCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 146 ~------~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
. .++++++||++|.|+.++++.+.+.++
T Consensus 154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 154 YGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2 247999999999999999999998764
No 188
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=3.3e-19 Score=130.09 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=98.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hhHhhccccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AMQRLSISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (200)
.+++++|++|+|||||+++|.+..... .+..++.......+..++ ..+++||+||..+.. .....+++++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 379999999999999999999865321 222222222233333443 589999999975322 2344578899
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCC-----------------------------------------------
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGAN----------------------------------------------- 112 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 112 (200)
|++++|+|++++.. ........+....-..+
T Consensus 79 d~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~ 156 (233)
T cd01896 79 DLILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred CEEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence 99999999987653 22222222221110000
Q ss_pred ----------------CCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 113 ----------------ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 113 ----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.....|+++|+||+|+.+..+ ...+.. ...++++||+++.|++++|+.+++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-----~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-----LDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-----HHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012359999999999864322 222322 34689999999999999999999865
No 189
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=7.5e-20 Score=148.96 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=100.8
Q ss_pred CCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhh------Hhhcc--ccCCEEEE
Q psy8700 14 GAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAM------QRLSI--SKGHAFIL 84 (200)
Q Consensus 14 G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~~i~ 84 (200)
|.+|+|||||+|++.+........+... +.....+..++ ..+++|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765333333322 22222333444 36899999998775432 33333 36899999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|.++.+.. ..+...+.+ .+.|+++++||+|+.+..... .+...+.+..+++++++||++|.|++++
T Consensus 79 VvDat~ler~---l~l~~ql~~--------~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE--------LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERL 146 (591)
T ss_pred EecCCcchhh---HHHHHHHHh--------cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 9999875321 222222222 348999999999986655433 3456677788999999999999999999
Q ss_pred HHHHHHHH
Q psy8700 165 FAELLNLE 172 (200)
Q Consensus 165 ~~~i~~~~ 172 (200)
++.+.+..
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99998764
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=1.2e-19 Score=147.70 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=105.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC---CCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT---FRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+.|+++|.+++|||||+++|.+.. +.+.+.++..... ...+..++ ..+.+||+||++.+.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999998633 2222222222111 12233333 68999999999988888888899999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccC--HHHHHHHHHHh----CCcEEEeccc
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVS--AAEGEAEAKMW----GCHFMETSAK 156 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~~~vSa~ 156 (200)
+|+|++++...+. ...+..+.. ...| ++|++||+|+.+..... ..+...+.... +++++++||+
T Consensus 79 LVVDa~~G~~~qT-~ehl~il~~--------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQT-GEHLAVLDL--------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHH-HHHHHHHHH--------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 9999998422222 122222222 2256 99999999997644321 12223333332 4789999999
Q ss_pred CCCcHHHHHHHHHHHHhc
Q psy8700 157 TNHNVKELFAELLNLEKN 174 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~ 174 (200)
+|.|++++++.+...+..
T Consensus 150 tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 150 TGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 999999999999877644
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=2.8e-19 Score=148.88 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=108.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChh----------hHhhc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPA----------MQRLS 75 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~ 75 (200)
.++|+++|.||||||||+|+|.+.... ..+..+.+. .....+......+.+|||||..++.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 579999999999999999999886542 222222222 22333444556899999999776532 12223
Q ss_pred c--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700 76 I--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 76 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 153 (200)
+ ..+|++++|+|.++.++. ..++..+.+ ...|+++++||+|+.+.+.. ..+...+.+..+++++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e--------~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE--------LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPL 148 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH--------cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEE
Confidence 2 478999999999886442 234444443 23899999999998755443 344566777889999999
Q ss_pred cccCCCcHHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~ 172 (200)
|+.++.|++++++.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999998765
No 192
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=2.3e-19 Score=148.82 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=107.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
.....|+++|..++|||||+++|....+.....+.+.... ...+..++ ..+.||||||+..|..++...+..+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4668899999999999999999987665443333222111 12233333 57999999999999999988899999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHH---HHHHHhC--CcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGE---AEAKMWG--CHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~---~~~~~~~--~~~~~vSa~~ 157 (200)
+|+|+++...-+.... +..+. ....|++|++||+|+.+...... .+.. .+...++ ++++++||++
T Consensus 366 LVVdAddGv~~qT~e~-i~~a~--------~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 366 LVVAADDGVMPQTIEA-INHAK--------AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEECCCCCCHhHHHH-HHHHH--------hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999988533222222 22222 24489999999999965321000 0111 1122233 6899999999
Q ss_pred CCcHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNL 171 (200)
Q Consensus 158 ~~~i~~~~~~i~~~ 171 (200)
|.|++++|++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998763
No 193
>KOG1423|consensus
Probab=99.83 E-value=8.1e-20 Score=132.95 Aligned_cols=166 Identities=20% Similarity=0.207 Sum_probs=109.2
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh------------h
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP------------A 70 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------------~ 70 (200)
+.+..+.|+++|.||+|||||.|.+++.+..+..........+.........+++.|+||||..... .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3566799999999999999999999998875544443333334433344455799999999944211 1
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-------------ccCHH
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-------------EVSAA 137 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~~~ 137 (200)
--...+.+||.+++++|+++....-. ...+.++..+ ...|-++|+||.|...++ +....
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-------hcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 22335567999999999997433222 2233334443 348899999999976542 11111
Q ss_pred HHHHHHHHhC---------------C-cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 138 EGEAEAKMWG---------------C-HFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 138 ~~~~~~~~~~---------------~-~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
......+... + .+|.+||+.|.||+++-+++...+....
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 1111111111 1 4899999999999999999998776543
No 194
>KOG0072|consensus
Probab=99.83 E-value=1.2e-20 Score=122.35 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=122.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
++.+.+|+++|-.|+||||+..++.-++.. ...|+.++..... .-++..+++||.+|+.+.+..|+.|+.+.|++|
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v---~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETV---PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccc---ccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 347899999999999999998888765543 3455555444332 225678999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC---HHHHHHHHHHhCCcEEEecccCCCc
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---AAEGEAEAKMWGCHFMETSAKTNHN 160 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~vSa~~~~~ 160 (200)
+|+|.+|.+.+......+-.+.... +......+|++||.|........ ..+.....+..-..++++||..|.|
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~----eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G 166 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEE----ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG 166 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccH----hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence 9999999988776655554443322 24557788999999986543221 1222222233336899999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy8700 161 VKELFAELLNLEKNR 175 (200)
Q Consensus 161 i~~~~~~i~~~~~~~ 175 (200)
+++.++|+.+.+.++
T Consensus 167 ld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 167 LDPAMDWLQRPLKSR 181 (182)
T ss_pred CcHHHHHHHHHHhcc
Confidence 999999999988654
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.3e-19 Score=148.70 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=100.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEE--eCCcEEEEEEEeCCCCCC--------ChhhHhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--CNKNICTLQITDTTGSHQ--------FPAMQRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~--------~~~~~~~~ 75 (200)
...+|+++|.+|+|||||+|+|++... ......++.++.... ..-....+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 457899999999999999999998653 111222222222121 111234789999999763 22344557
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEec
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETS 154 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vS 154 (200)
+..+|++++|+|+++.-.... ..+...+.. .+.|+++|+||+|+..... ....+. ..+. ..+++|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--------~~~pvIlV~NK~D~~~~~~----~~~~~~-~lg~~~~~~iS 417 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--------AGKPVVLAVNKIDDQASEY----DAAEFW-KLGLGEPYPIS 417 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--------cCCCEEEEEECcccccchh----hHHHHH-HcCCCCeEEEE
Confidence 789999999999986432221 233333332 3489999999999854321 111211 2233 567999
Q ss_pred ccCCCcHHHHHHHHHHHHhc
Q psy8700 155 AKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~ 174 (200)
|++|.|+.++++++.+.+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999998754
No 196
>KOG0074|consensus
Probab=99.82 E-value=1.4e-19 Score=117.16 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=124.7
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
++...++||+++|-.++|||||+..|.+... ....|+.++...+... ...+.+.+||.+|+...+..|..|+.+.|+
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~--~g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEY--DGTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEee--cCcEEEEEEecCCccccchhhhhhhhccce
Confidence 3467899999999999999999999987553 4556666655544322 345789999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH---HHHHhCCcEEEecccCC
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA---EAKMWGCHFMETSAKTN 158 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~vSa~~~ 158 (200)
+|||+|.+|...++.+...+-.+.+-- .....|+.|..||.|+.-........... ........+.++|+..+
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleee----Kl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEE----KLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhh----hhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc
Confidence 999999999988888777666665544 35779999999999987655433221111 11222347889999999
Q ss_pred CcHHHHHHHHHHHH
Q psy8700 159 HNVKELFAELLNLE 172 (200)
Q Consensus 159 ~~i~~~~~~i~~~~ 172 (200)
.|+..-.+|+....
T Consensus 165 eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 165 EGSTDGSDWVQSNP 178 (185)
T ss_pred cCccCcchhhhcCC
Confidence 99988888876643
No 197
>KOG0096|consensus
Probab=99.82 E-value=5.6e-20 Score=124.66 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=136.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCc-EEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..++++++|+.|.||||++++.+.+.+..+|.++.+-.........+. .+.+..|||.|++.+..+...++-.+.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 479999999999999999999999999999999998666554444333 4899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
.||++...++.++..|...+.+.. .++|+++.+||.|..+.. .......+....++.||++||+.+.|...-
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~------~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR------ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh------cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccc
Confidence 999999999999999999999887 559999999999975543 122334455567789999999999999999
Q ss_pred HHHHHHHHh
Q psy8700 165 FAELLNLEK 173 (200)
Q Consensus 165 ~~~i~~~~~ 173 (200)
|-|+.+.+.
T Consensus 161 Fl~LarKl~ 169 (216)
T KOG0096|consen 161 FLWLARKLT 169 (216)
T ss_pred hHHHhhhhc
Confidence 999988764
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=7.7e-19 Score=143.20 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=112.3
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----CcCCCc------ccce-eEEEE-----eCCcEEEEEEEeCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-----SYIPTI------EDTY-RQVIS-----CNKNICTLQITDTT 63 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----~~~~~~------~~~~-~~~~~-----~~~~~~~~~~~D~~ 63 (200)
...+.-+++++|..++|||||+.+|+... ... .+..+. +-+. ...+. .++..+.+.+||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 33456689999999999999999998632 111 111110 1111 11111 15567899999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA 143 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 143 (200)
|+.++...+..++..+|++++|+|++++...+....|... .. .+.|+++|+||+|+.+... ......+.
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~--------~~lpiIvViNKiDl~~a~~--~~v~~ei~ 151 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE--------NDLEIIPVLNKIDLPAADP--ERVKQEIE 151 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH--------CCCCEEEEEECCCCCcccH--HHHHHHHH
Confidence 9999998899999999999999999987655554444322 11 3479999999999864321 11123333
Q ss_pred HHhCC---cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 144 KMWGC---HFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 144 ~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
...++ .++++||++|.|+.+++++|.+.+...
T Consensus 152 ~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 152 DVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 44555 389999999999999999999987643
No 199
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=4.6e-19 Score=136.37 Aligned_cols=153 Identities=25% Similarity=0.285 Sum_probs=110.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCCChh--------hHhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQFPA--------MQRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~~~--------~~~~~ 75 (200)
..+|++++|.||+|||||+|+|++..- ..+...+++++..+ .++-..+.+.+.||+|.-+... .....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 468999999999999999999998653 55556666665422 2333446899999999665432 33346
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
++.||.+++|+|.+.+..-.+...+. .. ..+.|+++|.||.|+......... ....+.+++.+|+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~-----~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa 358 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIE-----LL-----PKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISA 358 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHH-----hc-----ccCCCEEEEEechhcccccccchh-----hccCCCceEEEEe
Confidence 77899999999999863333322222 11 366899999999999876542211 2233457999999
Q ss_pred cCCCcHHHHHHHHHHHHhcc
Q psy8700 156 KTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~~ 175 (200)
+++.|++.+.+.|.+.+...
T Consensus 359 ~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 359 KTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCccCHHHHHHHHHHHHhhc
Confidence 99999999999999988655
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=133.42 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=111.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE----EEEeCCcEEEEEEEeCCCCCCChh-----------
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ----VISCNKNICTLQITDTTGSHQFPA----------- 70 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~G~~~~~~----------- 70 (200)
..+||+++|.||+|||||+|+|++.. .......+++++. .+..++. .+.++||+|.-+...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeeh
Confidence 56999999999999999999999854 2344444444443 3333444 799999999543221
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-----HHHHH
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-----AEAKM 145 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~ 145 (200)
-....+..++.+++|+|++.+-+.++. .....+.+ ...+++||+||+|+.+..+....... .+...
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~--------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE--------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH--------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence 223355678999999999998765553 33333333 33799999999999876332222221 11222
Q ss_pred hCCcEEEecccCCCcHHHHHHHHHHHHhccchhH
Q psy8700 146 WGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179 (200)
Q Consensus 146 ~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~ 179 (200)
...+++.+||++|.++.++|+.+...+......+
T Consensus 324 ~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 324 DFAPIVFISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred cCCeEEEEEecCCCChHHHHHHHHHHHHHhcccc
Confidence 3458999999999999999999999887665443
No 201
>KOG4423|consensus
Probab=99.81 E-value=1.3e-21 Score=132.20 Aligned_cols=173 Identities=27% Similarity=0.377 Sum_probs=142.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EE-EeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VI-SCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
+.+.+|++++|.-|+|||+++.+.+...++.+|..+++..+.- .. .-+...+++++||..|++++..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3667999999999999999999999999988999998855532 22 223445789999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHhCC-cEEEecccCCC
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMWGC-HFMETSAKTNH 159 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~vSa~~~~ 159 (200)
.++|||++..-+++....|.+.+........ ....|+++..||+|........ ......+.++.|+ .++++|++.+.
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpn-g~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPN-GTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCC-CCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 9999999999999999999988887765433 2347889999999986543222 2445667788887 89999999999
Q ss_pred cHHHHHHHHHHHHhccch
Q psy8700 160 NVKELFAELLNLEKNRNI 177 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~ 177 (200)
|+.|+...+++.+.-.+.
T Consensus 181 ni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDE 198 (229)
T ss_pred ChhHHHHHHHHHHHhhcc
Confidence 999999999998865553
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=2.9e-18 Score=138.95 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=100.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcC----CCcccceeEEEEeC-------------CcEEEEEEEeCCCCCCCh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYI----PTIEDTYRQVISCN-------------KNICTLQITDTTGSHQFP 69 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~ 69 (200)
..-|+++|.+++|||||+++|.+..+..... .+.+.++....... .....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4569999999999999999999876543221 12221111100000 011248899999999999
Q ss_pred hhHhhccccCCEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc------------
Q psy8700 70 AMQRLSISKGHAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV------------ 134 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------ 134 (200)
.++..++..+|++++|+|+++. .++..+. .+.. ...|+++++||+|+......
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--------cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 9999999999999999999873 3333322 1221 34799999999998642100
Q ss_pred CHH----H--------HHHHHH------------Hh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 135 SAA----E--------GEAEAK------------MW--GCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 135 ~~~----~--------~~~~~~------------~~--~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
... . ...+.. .+ ..+++++||++|.|++++++++....
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 0 000110 11 25899999999999999999887643
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=1.1e-18 Score=138.18 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=101.3
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhC--CCCCCc---------------------CCC-----cccce--eEEEEe
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRESY---------------------IPT-----IEDTY--RQVISC 50 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~---------------------~~~-----~~~~~--~~~~~~ 50 (200)
|+.+.+.++|+++|..++|||||+.+|+.. ...... ... ..+.+ .....+
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 566778899999999999999999999852 221100 000 00111 112234
Q ss_pred CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 51 NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
....+.+.+|||||++.+.......+..+|++++|+|++++++....+.+. ..+.... ...|++|++||+|+.
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~------~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL------GINQLIVAINKMDSV 154 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc------CCCeEEEEEEChhcc
Confidence 445578999999998887766666778999999999999875332111111 1122222 235799999999996
Q ss_pred ccccc----CHHHHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy8700 130 ENREV----SAAEGEAEAKMWG-----CHFMETSAKTNHNVKELF 165 (200)
Q Consensus 130 ~~~~~----~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~ 165 (200)
+..+. ...+...+.+..+ ++++++||++|.|+.+.+
T Consensus 155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 42211 1122333444444 579999999999998643
No 204
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=5.2e-18 Score=117.82 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCC----------ChhhHhhccc
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ----------FPAMQRLSIS 77 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~ 77 (200)
.|+++|++|||||||++++.+........++.+.+.. .....++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999965554444444332222 2222222 799999999543 2233333443
Q ss_pred ---cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH--HHHHHH--HhCCcE
Q psy8700 78 ---KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE--GEAEAK--MWGCHF 150 (200)
Q Consensus 78 ---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~--~~~~~~ 150 (200)
..+++++++|.......... .....+.. ...|+++++||+|+....+..... ...... ....++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~--------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE--------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI 148 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH--------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence 35788899988765322221 12222322 237999999999986433222111 111111 334589
Q ss_pred EEecccCCCcHHHHHHHHHHH
Q psy8700 151 METSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~ 171 (200)
+++|++++.++.+++++|.+.
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 999999999999999999875
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=9.5e-19 Score=137.37 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=103.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc------c-c----------------ceeEEEEeCC------cEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI------E-D----------------TYRQVISCNK------NIC 55 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~------~-~----------------~~~~~~~~~~------~~~ 55 (200)
...++|+++|.+++|||||+++|.+.... .+.... . . .+......++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d-~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTD-THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecc-cCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 46799999999999999999999753221 100000 0 0 0000000011 135
Q ss_pred EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC
Q psy8700 56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS 135 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 135 (200)
.+.+|||||++.+..........+|++++|+|++++....+....+..+. .. ...|+++++||+|+.+.....
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~------gi~~iIVvvNK~Dl~~~~~~~ 153 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-II------GIKNIVIVQNKIDLVSKEKAL 153 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-Hc------CCCeEEEEEEccccCCHHHHH
Confidence 79999999999888877778888999999999997531122222232222 22 224789999999997543211
Q ss_pred H--HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 136 A--AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 136 ~--~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
. .+...+... .+++++++||++|.|+++++++|...+.
T Consensus 154 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 154 ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1 111222222 1568999999999999999999998654
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=2.9e-18 Score=135.74 Aligned_cols=155 Identities=21% Similarity=0.158 Sum_probs=96.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCC------------cCCC--------------ccccee--EEEEeCCc
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES------------YIPT--------------IEDTYR--QVISCNKN 53 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~------------~~~~--------------~~~~~~--~~~~~~~~ 53 (200)
+-+.++|+++|.+++|||||+++|+... .... -..+ ..+.+. ....++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4456999999999999999999998422 1100 0000 011111 12234445
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
.+.+.+|||||+..+.......+..+|++++|+|++++..+.. ....+..+ ... ...|++|++||+|+.+..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~------~~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTL------GINQLIVAINKMDAVNYD 155 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHc------CCCeEEEEEEcccccccc
Confidence 6789999999998876666666788999999999987312211 12222222 222 224689999999997522
Q ss_pred cc----CHHHHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy8700 133 EV----SAAEGEAEAKMWG-----CHFMETSAKTNHNVKELF 165 (200)
Q Consensus 133 ~~----~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~ 165 (200)
+. ...+...+....+ .+++++||++|.|+.+..
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11 1112223333333 479999999999998744
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=7.4e-18 Score=137.02 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=111.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh--CCCCCCcC------------CCcccce-eEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK--GTFRESYI------------PTIEDTY-RQVISCNKNICTLQITDTTGSHQFPA 70 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (200)
+.-+|+++|..++|||||+++|+. +.+...+. .+.+.+. .....++...+.+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 33322211 0111111 22334445567999999999999999
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHHHH------
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEAEA------ 143 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~------ 143 (200)
.+..+++.+|++++|+|+.+....+ ...+|..+.. ...|.++++||+|+.+.+.... .+...+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 9999999999999999998764333 3444444433 2378999999999865432111 1111111
Q ss_pred -HHhCCcEEEecccCCC----------cHHHHHHHHHHHHhcc
Q psy8700 144 -KMWGCHFMETSAKTNH----------NVKELFAELLNLEKNR 175 (200)
Q Consensus 144 -~~~~~~~~~vSa~~~~----------~i~~~~~~i~~~~~~~ 175 (200)
....+|++.+||++|. ++..+++.|.+.+...
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1124689999999998 5889999999888654
No 208
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.6e-18 Score=124.76 Aligned_cols=148 Identities=20% Similarity=0.124 Sum_probs=89.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC--CCCc------------C---------CCc-----cccee--EEEEeCCcEEEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF--RESY------------I---------PTI-----EDTYR--QVISCNKNICTLQ 58 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~--~~~~------------~---------~~~-----~~~~~--~~~~~~~~~~~~~ 58 (200)
+|+++|.+|+|||||+++|+...- .... . ... .+.+. ....+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975321 1000 0 000 00010 0112222334788
Q ss_pred EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc----
Q psy8700 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV---- 134 (200)
Q Consensus 59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---- 134 (200)
+|||||+..+.......+..+|++++|+|++++..-.. ...+..+.. . ...++++|+||+|+.+....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~------~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-L------GIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-c------CCCcEEEEEEchhcccCCHHHHHH
Confidence 99999988776666667889999999999987643222 222222222 2 22457889999998653211
Q ss_pred CHHHHHHHHHHhC---CcEEEecccCCCcHHHH
Q psy8700 135 SAAEGEAEAKMWG---CHFMETSAKTNHNVKEL 164 (200)
Q Consensus 135 ~~~~~~~~~~~~~---~~~~~vSa~~~~~i~~~ 164 (200)
...+...+....+ .+++++||++|.|+.+.
T Consensus 153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 0112223333444 35899999999998754
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=3.9e-18 Score=124.63 Aligned_cols=113 Identities=23% Similarity=0.270 Sum_probs=79.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC--C----CcCCCc----------ccc-eeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFR--E----SYIPTI----------EDT-YRQVISCNKNICTLQITDTTGSHQFPAM 71 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~--~----~~~~~~----------~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 71 (200)
+|+++|.+|+|||||+++|+...-. . ....+. +.+ ......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999863210 0 000000 000 1122333445578999999999999888
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
...+++.+|++++|+|..+.... ....+|..+.. ...|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~--------~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK--------LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH--------cCCCEEEEEECccccC
Confidence 89999999999999999986543 34555655543 2379999999999853
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=2.9e-18 Score=113.73 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=93.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC----CChhhHhhccccCCEEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH----QFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~~i~ 84 (200)
||+++|+.|||||||+++|.+... .|..|.. +. +.-.++||||.- .+..-......++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~-----~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IE-----YYDNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eE-----ecccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 899999999999999999988554 3322221 11 122459999932 233344445568999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKE 163 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~ 163 (200)
+.|++++.+.-. ..+ .. .-..|++=|+||+|+..... ....+..+.+..|+ .+|++|+.+|.|+++
T Consensus 70 l~dat~~~~~~p--P~f---a~-------~f~~pvIGVITK~Dl~~~~~-~i~~a~~~L~~aG~~~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 70 LQDATEPRSVFP--PGF---AS-------MFNKPVIGVITKIDLPSDDA-NIERAKKWLKNAGVKEIFEVSAVTGEGIEE 136 (143)
T ss_pred EecCCCCCccCC--chh---hc-------ccCCCEEEEEECccCccchh-hHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence 999998754222 111 11 12379999999999974322 33445566666777 789999999999999
Q ss_pred HHHHHH
Q psy8700 164 LFAELL 169 (200)
Q Consensus 164 ~~~~i~ 169 (200)
+.+.|.
T Consensus 137 L~~~L~ 142 (143)
T PF10662_consen 137 LKDYLE 142 (143)
T ss_pred HHHHHh
Confidence 998874
No 211
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=8.8e-18 Score=113.94 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=111.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCc-ccc-eeEEEEe------CCcEEEEEEEeCCCCCCChhhHhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTI-EDT-YRQVISC------NKNICTLQITDTTGSHQFPAMQRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~-~~~-~~~~~~~------~~~~~~~~~~D~~G~~~~~~~~~~~ 75 (200)
.+.||+++|+-++||||++++++....... ..+.. ... ...++.. ......+.+++||||.++..++..+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence 468999999999999999999987653111 00010 000 0011111 1223579999999999999999999
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEe
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMET 153 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~v 153 (200)
++.+.++|+++|.+.+..+ .....+..+.... .+|++|++||.|+.+... .....+.... ...+++++
T Consensus 89 ~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-------~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-------PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEI 158 (187)
T ss_pred hCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-------CCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeee
Confidence 9999999999999998877 4344444444333 289999999999977553 3333333333 37799999
Q ss_pred cccCCCcHHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLNL 171 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~ 171 (200)
+|..+++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999988775
No 212
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=6.6e-18 Score=127.93 Aligned_cols=163 Identities=22% Similarity=0.228 Sum_probs=117.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC--hhhHhh-----
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF--PAMQRL----- 74 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~----- 74 (200)
++.-..|+++|..|+|||||+|+|.+... ....+.|.+.+.+.....++ ..+.+.||-|.-+. ..+..+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g--~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG--RKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC--ceEEEecCccCcccCChHHHHHHHHHH
Confidence 45678999999999999999999997553 23445555555444333333 37999999995432 222222
Q ss_pred -ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700 75 -SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 75 -~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 153 (200)
....+|.++.|+|+++|.....+......+.+.. ..+.|+++|.||+|+..... .......... ..+.+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~-----~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~i 336 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG-----ADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFI 336 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC-----CCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEE
Confidence 3347899999999999988888888888888776 35699999999999876443 1111111112 58899
Q ss_pred cccCCCcHHHHHHHHHHHHhccchh
Q psy8700 154 SAKTNHNVKELFAELLNLEKNRNIS 178 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~~~~~~ 178 (200)
||++|.|++.+.+.|.+.+......
T Consensus 337 SA~~~~gl~~L~~~i~~~l~~~~~~ 361 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLSGLRTE 361 (411)
T ss_pred EeccCcCHHHHHHHHHHHhhhcccc
Confidence 9999999999999999988754433
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=4.1e-18 Score=138.61 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=109.2
Q ss_pred EEEEECCCCCCHHHHHHHHhhC--CCCCCcCC------------Ccccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG--TFRESYIP------------TIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQR 73 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 73 (200)
+|+++|..++|||||+++|+.. .+...... ..+-+. .....+....+.+.+|||||+.++.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999862 22221100 001111 12223334457899999999999998889
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHH-------HH
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEA-------KM 145 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~-------~~ 145 (200)
.++..+|++++|+|+.+.. ..+...+|..+... ..|++|++||+|+.+.+... ..+...+. ..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~ 153 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ 153 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999998753 34445666655542 37899999999986543211 11111211 12
Q ss_pred hCCcEEEecccCCC----------cHHHHHHHHHHHHhcc
Q psy8700 146 WGCHFMETSAKTNH----------NVKELFAELLNLEKNR 175 (200)
Q Consensus 146 ~~~~~~~vSa~~~~----------~i~~~~~~i~~~~~~~ 175 (200)
..++++++||++|. |+..+|+.|.+.+...
T Consensus 154 l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 154 LDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 34689999999996 7999999999988654
No 214
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.5e-18 Score=134.58 Aligned_cols=157 Identities=21% Similarity=0.239 Sum_probs=112.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCC------ChhhHhhccc-
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ------FPAMQRLSIS- 77 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~------~~~~~~~~~~- 77 (200)
+..+|+++|.||+|||||+|+|++.+..-...| +.+. +++..+.....+++++|+||..+ .....+.++.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 457799999999999999999999764222222 2223 23333333444799999999433 2345555554
Q ss_pred -cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 78 -KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 78 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
+.|+++.|+|+++-++ ++.-.+ .+.+ -..|+++++|++|..... ....+...+.+..|+|++++||+
T Consensus 80 ~~~D~ivnVvDAtnLeR--nLyltl-QLlE--------~g~p~ilaLNm~D~A~~~-Gi~ID~~~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 80 GKPDLIVNVVDATNLER--NLYLTL-QLLE--------LGIPMILALNMIDEAKKR-GIRIDIEKLSKLLGVPVVPTVAK 147 (653)
T ss_pred CCCCEEEEEcccchHHH--HHHHHH-HHHH--------cCCCeEEEeccHhhHHhc-CCcccHHHHHHHhCCCEEEEEee
Confidence 4699999999998753 322222 2333 337899999999985544 34567788899999999999999
Q ss_pred CCCcHHHHHHHHHHHHhccc
Q psy8700 157 TNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~~~ 176 (200)
+|.|++++++.+.+......
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGEGLEELKRAIIELAESKT 167 (653)
T ss_pred cCCCHHHHHHHHHHhccccc
Confidence 99999999999988665554
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=115.66 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=104.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCC----------CCCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTG----------SHQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 72 (200)
++...-|+++|.+|+|||||||+|++.+--.....+.+.+.. ..+.+++. +.++|.|| .+.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 456789999999999999999999996632222223332322 23344444 88999999 23455666
Q ss_pred hhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH---HHHh
Q psy8700 73 RLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE---AKMW 146 (200)
Q Consensus 73 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~ 146 (200)
..|++. ..++++++|+..+-...+. ..++.+.. ...|++|++||+|.....+......... ....
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~--------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE--------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH--------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 666664 4677888887765433231 33333333 4489999999999988765543322222 1112
Q ss_pred CCc--EEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 147 GCH--FMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 147 ~~~--~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
... ++.+|+..+.|++++.+.|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 7788999999999999999987754
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=5.4e-18 Score=133.08 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=101.1
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc-----CCCcccc-----------------eeEEEEeC--C----cE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY-----IPTIEDT-----------------YRQVISCN--K----NI 54 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~-----------------~~~~~~~~--~----~~ 54 (200)
...+.++|+++|..++|||||+.+|.+....... ..+..-. +......+ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4567899999999999999999999653211100 0011000 00000000 0 13
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
..+.+|||||+..+..........+|++++|+|++++. .... ...+..+.. . ...|+++|+||+|+.+...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~-~------~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDI-I------GIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHH-c------CCCcEEEEEEeeccccchh
Confidence 57899999998776665555566679999999999653 1222 222222222 2 2247899999999976432
Q ss_pred cCH--HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 134 VSA--AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 134 ~~~--~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
... .+...+... .+.+++++||++|.|++++++.|.+.+..
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 211 111222221 24689999999999999999999887643
No 217
>KOG1707|consensus
Probab=99.77 E-value=3.1e-18 Score=134.06 Aligned_cols=170 Identities=24% Similarity=0.314 Sum_probs=128.2
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+....+||+++|+.|+||||||-+|+...+.+...+-.+...-. ..+....+...++|++.....+......++.+|++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 35678999999999999999999999999877766655544332 22333445689999997776667778899999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHHHh-CC-cEEEecccCCC
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAKMW-GC-HFMETSAKTNH 159 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~-~~-~~~~vSa~~~~ 159 (200)
+++++++++++++.+...|..+.+... ....+.|+|+|+||.|........... -.-....+ .+ ..++|||++..
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~--~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLF--GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhccc--CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 999999999999999999977666553 245789999999999998655442222 11122222 23 57899999999
Q ss_pred cHHHHHHHHHHHHhcc
Q psy8700 160 NVKELFAELLNLEKNR 175 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~ 175 (200)
++.++|...-..+...
T Consensus 162 n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 162 NVSELFYYAQKAVIHP 177 (625)
T ss_pred hhHhhhhhhhheeecc
Confidence 9999998777665433
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=1.2e-17 Score=136.50 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC---CCCc--CCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF---RESY--IPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
-|+++|.+++|||||+++|.+... .+.. ..|....+......++ ..+.+|||||++.+.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 589999999999999999986332 1111 1122111111111122 35899999999988777777888999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH--HHHHHHHHHhC---CcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA--AEGEAEAKMWG---CHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~vSa~~ 157 (200)
+|+|++++..-+. ...+..+.. . ..| ++||+||+|+.+...... .+...+....+ .+++++||++
T Consensus 80 LVVda~eg~~~qT-~ehl~il~~-l-------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 80 LVVACDDGVMAQT-REHLAILQL-T-------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred EEEECCCCCcHHH-HHHHHHHHH-c-------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 9999987432222 222222222 2 144 579999999975432221 12222222223 5899999999
Q ss_pred CCcHHHHHHHHHHHHhc
Q psy8700 158 NHNVKELFAELLNLEKN 174 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~ 174 (200)
|.|++++++.|.+....
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876543
No 219
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=7.1e-18 Score=121.69 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=98.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE-Ee-CCcEEEEEEEeCCCCCCChh-----hHhhccccCCE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI-SC-NKNICTLQITDTTGSHQFPA-----MQRLSISKGHA 81 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~~ 81 (200)
||+++|+.+|||||..+-+.. ++.+......+.+..... .+ ......+.+||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~-~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFH-KYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHc-CCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999996666554 443333333333332211 11 23446899999999875533 46778999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH------HHHHHHHHHhC---CcEEE
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA------AEGEAEAKMWG---CHFME 152 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~---~~~~~ 152 (200)
+|||+|+.+.+....+..+...+..... ..++..+.|+++|+|+........ ..........+ +.++.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~---~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQ---YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHH---HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHH---hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 9999999954544454444444443332 237889999999999975432111 11222223344 67899
Q ss_pred ecccCCCcHHHHHHHHHHHHhcc
Q psy8700 153 TSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
||..+ ..+.++|..|++.+...
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTSTT
T ss_pred ccCcC-cHHHHHHHHHHHHHccc
Confidence 99877 58999999999977543
No 220
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=2.9e-17 Score=116.58 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=92.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC------Cc--CCC-----cccce--eEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE------SY--IPT-----IEDTY--RQVISCNKNICTLQITDTTGSHQFPAM 71 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~------~~--~~~-----~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~~~ 71 (200)
.++|+++|.+++|||||+++|+...... .+ ... ..+.+ .....+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999998631100 00 000 01111 112233444568899999998887777
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHHHHh-
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEAKMW- 146 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~- 146 (200)
....+..+|++++|+|+..+-.- .....+..+.... .| +++++||+|+....+... .+...+....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~--------~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQVG--------VPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--------CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 77788899999999999875332 2233444443322 55 779999999864322111 1222222222
Q ss_pred ----CCcEEEecccCCCcHH
Q psy8700 147 ----GCHFMETSAKTNHNVK 162 (200)
Q Consensus 147 ----~~~~~~vSa~~~~~i~ 162 (200)
+++++++||++|.|+.
T Consensus 153 ~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 153 FDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccccCCeEEEeeCccccCCC
Confidence 3589999999999853
No 221
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=3e-17 Score=118.94 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=95.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCC-----------------------cccceeE--------------EEEeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-----------------------IEDTYRQ--------------VISCN 51 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~--------------~~~~~ 51 (200)
||+++|+.++|||||++++..+.+....... .+..... .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999875553211100 0000000 00111
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.....+.++||||+..+.......+. .+|++++|+|+..+..- ....++..+.. ...|+++|+||+|+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~--------~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA--------LNIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH--------cCCCEEEEEECcccc
Confidence 22357899999999887665554453 68999999998765432 22334443433 337999999999986
Q ss_pred cccccCHHHHHHHHHHh-----------------------------CCcEEEecccCCCcHHHHHHHHHH
Q psy8700 130 ENREVSAAEGEAEAKMW-----------------------------GCHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
+........ ....... ..|+|.+|+.+|.|++++++.|..
T Consensus 152 ~~~~~~~~~-~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 152 PANILQETL-KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CHHHHHHHH-HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 543322211 1111111 238999999999999999988754
No 222
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=3.5e-17 Score=120.64 Aligned_cols=160 Identities=23% Similarity=0.247 Sum_probs=107.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCC-C----Chhh---Hhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSH-Q----FPAM---QRL 74 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~----~~~~---~~~ 74 (200)
.++...|++.|+||+|||||++++++.+..-. |.-|+-+..-. +++.....+|++||||.- + .+.+ ...
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--eeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 44778999999999999999999998664322 22222222222 344455689999999932 1 1221 111
Q ss_pred cccc-CCEEEEEeeCCC--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEE
Q psy8700 75 SISK-GHAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFM 151 (200)
Q Consensus 75 ~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
.++. +++++|+||.+. ..+++....++..+..... .|+++|+||+|..+.......... .....+....
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-------~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~ 314 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-------APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPL 314 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-------CCeEEEEecccccchhHHHHHHHH-HHhhcccccc
Confidence 2222 588899999874 5577777788888877663 799999999998765544433333 3333344577
Q ss_pred EecccCCCcHHHHHHHHHHHHh
Q psy8700 152 ETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 152 ~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
.+++..+.+++.+-+.+.....
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHhh
Confidence 7888888888888877777643
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.76 E-value=3.4e-17 Score=116.86 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=95.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc--ceeEEEEe-CCcEEEEEEEeCCCCCCChh-----hHhhcccc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED--TYRQVISC-NKNICTLQITDTTGSHQFPA-----MQRLSISK 78 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~ 78 (200)
++||+++|++|+|||||+|+|.+...........+. +......+ ......+.+|||||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999985542221111111 11110001 11123689999999754322 22223567
Q ss_pred CCEEEEEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc-------CH-H---HHH-HHH--
Q psy8700 79 GHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENREV-------SA-A---EGE-AEA-- 143 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~-~---~~~-~~~-- 143 (200)
+|.++++.+ + ++.... .++..+... ..|+++|+||+|+....+. .. . ... ...
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHHh--------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 888888743 2 233333 333334332 2699999999998532210 00 1 011 111
Q ss_pred -HHhC---CcEEEeccc--CCCcHHHHHHHHHHHHhccchhHH
Q psy8700 144 -KMWG---CHFMETSAK--TNHNVKELFAELLNLEKNRNISLQ 180 (200)
Q Consensus 144 -~~~~---~~~~~vSa~--~~~~i~~~~~~i~~~~~~~~~~~~ 180 (200)
...+ .++|.+|+. .+.++..+.+.|...+.++..+.-
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 191 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF 191 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence 1112 378999998 578999999999999976655443
No 224
>KOG1489|consensus
Probab=99.75 E-value=2.8e-17 Score=120.36 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=108.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhh---ccccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRL---SISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~---~~~~~ 79 (200)
..|.++|.||+|||||+++++..+.. ..|.-|+-...-.++..++. .++.+-|.||.-+ .+.+... .++++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 45789999999999999999886541 11222211111112222222 3599999999442 2333333 45679
Q ss_pred CEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecc
Q psy8700 80 HAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSA 155 (200)
Q Consensus 80 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa 155 (200)
+.++||+|++.+ ..+++++.++.++..+.. ...+.|.+||+||+|+++.. ......+.+. .+..++++||
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek---~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK---GLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh---hhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeee
Confidence 999999999988 888888888888887776 46788999999999986322 1112333333 3446999999
Q ss_pred cCCCcHHHHHHHHHHH
Q psy8700 156 KTNHNVKELFAELLNL 171 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~ 171 (200)
+.++++.++++.|.+.
T Consensus 350 ~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 350 KSGEGLEELLNGLREL 365 (366)
T ss_pred ccccchHHHHHHHhhc
Confidence 9999999999988654
No 225
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.75 E-value=7.4e-17 Score=131.24 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=98.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC----CcccceeEEEEe---CCcE-----E-----EEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP----TIEDTYRQVISC---NKNI-----C-----TLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~~~D~~G~~~ 67 (200)
..+..|+++|.+++|||||+++|.+......... +.+.++...... .+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456799999999999999999986543222111 122111110000 0111 1 268999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc----------
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV---------- 134 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---------- 134 (200)
+..++...+..+|++++|+|+++ +.++..+. .+.. ...|+++++||+|+......
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--------RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--------cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 99888888889999999999987 44444332 1221 34799999999998521100
Q ss_pred ----C--HHH-------H-HHHHH------------H--hCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 135 ----S--AAE-------G-EAEAK------------M--WGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 135 ----~--~~~-------~-~~~~~------------~--~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
. ... . ..+.. . ...+++++||++|.|+.++++.+...
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0 000 0 00110 0 12479999999999999999988653
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=2.6e-17 Score=118.85 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCC-----------cCCCc------ccce-e--EEEEe---CCcEEEEEEEeCCCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRES-----------YIPTI------EDTY-R--QVISC---NKNICTLQITDTTGS 65 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~------~~~~-~--~~~~~---~~~~~~~~~~D~~G~ 65 (200)
+|+++|..|+|||||+++|+....... +..+. +.+. . ..... ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987443211 00110 0010 0 11111 355689999999999
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECcccC
Confidence 9998888889999999999999987665433 233332221 337999999999975
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.73 E-value=2.3e-17 Score=119.60 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=88.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC--CCC-C--------------------cCCCc-----cccee--EEEEeCCcEEEEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGT--FRE-S--------------------YIPTI-----EDTYR--QVISCNKNICTLQ 58 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~--~~~-~--------------------~~~~~-----~~~~~--~~~~~~~~~~~~~ 58 (200)
.|+++|.+++|||||+.+|+... ... . +.... .+.+. ....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996421 100 0 00000 01111 1222333456899
Q ss_pred EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH------HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS------LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
+|||||+..+.......+..+|++++|+|++++.. .......+.... .. ...|+++++||+|+....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~iiivvNK~Dl~~~~ 153 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL------GVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc------CCCeEEEEEEcccccccc
Confidence 99999987766666667778999999999998521 112222222222 11 236899999999997321
Q ss_pred ---c-cCH--HHHHHHHHHh-----CCcEEEecccCCCcHH
Q psy8700 133 ---E-VSA--AEGEAEAKMW-----GCHFMETSAKTNHNVK 162 (200)
Q Consensus 133 ---~-~~~--~~~~~~~~~~-----~~~~~~vSa~~~~~i~ 162 (200)
. ... .......... .++++++||++|.|+.
T Consensus 154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 111 1111122222 2579999999999987
No 228
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.8e-16 Score=116.62 Aligned_cols=159 Identities=20% Similarity=0.132 Sum_probs=105.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhc
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLS 75 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~ 75 (200)
++...+++++|+|++|||||+++|.+...... |.-|+-...-..+. -...++|+.|+||.-.- .......
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~--Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLE--YKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEe--ecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 56778999999999999999999998664322 22222222222333 34458999999994321 2445667
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCC-----------------------------------------
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL----------------------------------------- 114 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 114 (200)
.++||++++|+|+....+- .+.....+.+.....+..
T Consensus 138 ~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eccCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 8899999999999865541 223333333332221111
Q ss_pred ----------------------CCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 115 ----------------------ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 115 ----------------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.-.|.++|.||+|+.+... ...+.+.. .++.+||+.+.|++++.+.|++.+
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~-----~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE-----LERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH-----HHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 1129999999999876222 22222222 889999999999999999999987
Q ss_pred h
Q psy8700 173 K 173 (200)
Q Consensus 173 ~ 173 (200)
.
T Consensus 289 ~ 289 (365)
T COG1163 289 G 289 (365)
T ss_pred C
Confidence 4
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=1e-16 Score=125.59 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCC-----C-Cc------CCC-cccce--eEEEEeCCcEEEEEEEeCCCCC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-----E-SY------IPT-IEDTY--RQVISCNKNICTLQITDTTGSH 66 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----~-~~------~~~-~~~~~--~~~~~~~~~~~~~~~~D~~G~~ 66 (200)
.++.+.++|+++|..++|||||+++|++.... . .+ ... ..+.+ .....++.....+.+|||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 45677899999999999999999999742100 0 00 000 00111 1223344455688999999998
Q ss_pred CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCcccccCH---HHHHHH
Q psy8700 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETENREVSA---AEGEAE 142 (200)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~---~~~~~~ 142 (200)
+|..........+|++++|+|+.++...+. ...+..+.. ...|.+ +++||+|+.+..+... .+...+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~--------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--------cCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 887666666778899999999987433222 233333332 225655 6899999875432211 123333
Q ss_pred HHHhC-----CcEEEecccCCC
Q psy8700 143 AKMWG-----CHFMETSAKTNH 159 (200)
Q Consensus 143 ~~~~~-----~~~~~vSa~~~~ 159 (200)
....+ ++++++||+++.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 33333 689999999875
No 230
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=118.00 Aligned_cols=164 Identities=21% Similarity=0.202 Sum_probs=112.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHh---hccccCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQR---LSISKGH 80 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~---~~~~~~~ 80 (200)
-|.++|.|++|||||++.++..+.. ..|.-|+-...-..+.. ...-.+.+-|.||.-+ -..+.. ..++++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4789999999999999999886542 22332322222223333 2223689999999443 122222 3556789
Q ss_pred EEEEEeeCCChh---HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc-EEEeccc
Q psy8700 81 AFILVYSCTSRQ---SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAK 156 (200)
Q Consensus 81 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~ 156 (200)
++++|+|++..+ ..+++..+..++..+.. ...+.|.+||+||+|+....+........+....+.. .+++|+.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~---~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~ 316 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP---KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL 316 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhH---HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehh
Confidence 999999998655 36777777777777654 4678899999999997665544444445555555542 2229999
Q ss_pred CCCcHHHHHHHHHHHHhccc
Q psy8700 157 TNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~~~ 176 (200)
++.|++++...+.+.+.+..
T Consensus 317 t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 317 TREGLDELLRALAELLEETK 336 (369)
T ss_pred cccCHHHHHHHHHHHHHHhh
Confidence 99999999999999887665
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=2.1e-16 Score=123.76 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=101.5
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC---C---cC-----C-C-cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---S---YI-----P-T-IEDTY--RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~---~~-----~-~-~~~~~--~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.+-+.++|+++|.+++|||||+++|++..... . +. + . ..+.+ .....+......+.++||||+.+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 34567899999999999999999998632100 0 00 0 0 00111 11223334456789999999887
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEA 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~ 143 (200)
|.......+..+|++++|+|+.++..... ...+..+... ..| +++++||+|+.+..+... .+...+.
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l 158 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--------GVPYLVVFLNKVDLVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 77766666778999999999987533222 2333333322 266 678999999874332211 1222222
Q ss_pred HHhC-----CcEEEecccCCC--------cHHHHHHHHHHHHh
Q psy8700 144 KMWG-----CHFMETSAKTNH--------NVKELFAELLNLEK 173 (200)
Q Consensus 144 ~~~~-----~~~~~vSa~~~~--------~i~~~~~~i~~~~~ 173 (200)
...+ ++++++||++|. ++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2333 589999999983 57788887777654
No 232
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.70 E-value=7.6e-16 Score=116.60 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=98.1
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEE---------------------eCC-cEEEEEEEeCCCC-
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVIS---------------------CNK-NICTLQITDTTGS- 65 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~G~- 65 (200)
|+++|.|++|||||+|+|++..... .|..++-........ .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999866421 121111111111111 122 3368999999997
Q ss_pred ---CCChhhHhhc---cccCCEEEEEeeCCCh-------------hHHHHHHHHHHHHHH---------------HhCC-
Q psy8700 66 ---HQFPAMQRLS---ISKGHAFILVYSCTSR-------------QSLEELRPIWEVIRE---------------TKGG- 110 (200)
Q Consensus 66 ---~~~~~~~~~~---~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~~~~---------------~~~~- 110 (200)
++...+...+ ++++|++++|+|+... +..+++.....++.. ....
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555554 8899999999999731 112222211111111 0000
Q ss_pred -----------------------------C-C------------------CCCCCcEEEEeeCCCCCcccccCHHHHHHH
Q psy8700 111 -----------------------------A-N------------------ELASIPIMLVGNKCDETENREVSAAEGEAE 142 (200)
Q Consensus 111 -----------------------------~-~------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 142 (200)
. . .....|+++++||.|+.+..+. .....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~---~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN---ISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH---HHHHH
Confidence 0 0 0234699999999997543321 11111
Q ss_pred HHHhCCcEEEecccCCCcHHHHHH-HHHHHHhcc
Q psy8700 143 AKMWGCHFMETSAKTNHNVKELFA-ELLNLEKNR 175 (200)
Q Consensus 143 ~~~~~~~~~~vSa~~~~~i~~~~~-~i~~~~~~~ 175 (200)
.......++.+||+.+.++.++.+ .+.+++.+.
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 222345899999999999999998 688888553
No 233
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=5.4e-16 Score=121.53 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=100.4
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC---C-----cCCC-----ccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---S-----YIPT-----IEDTYR--QVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~-----~~~~-----~~~~~~--~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
++.+.++|+++|.+++|||||+++|++..... . .... ..+.+. ....+.....++.|+||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 45677999999999999999999998621100 0 0000 001111 1222333445789999999887
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCcccccCH---HHHHHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETENREVSA---AEGEAEA 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~---~~~~~~~ 143 (200)
+.......+..+|++++|+|+.+....+ ....+..+.. ...|.+ +++||+|+.+..+... .+...+.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--------cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 7766667778899999999998753222 2233333332 236755 5799999975322111 1222233
Q ss_pred HHh-----CCcEEEecccCCC----------cHHHHHHHHHHHH
Q psy8700 144 KMW-----GCHFMETSAKTNH----------NVKELFAELLNLE 172 (200)
Q Consensus 144 ~~~-----~~~~~~vSa~~~~----------~i~~~~~~i~~~~ 172 (200)
... .++++++||++|. ++..+++.+.+.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 332 2689999999984 5677777777654
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=8.7e-16 Score=114.09 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=78.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCCC-c-------CCCc----------c-cceeEEEEeCCcEEEEEEEeCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT--FRES-Y-------IPTI----------E-DTYRQVISCNKNICTLQITDTTGSH 66 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~--~~~~-~-------~~~~----------~-~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (200)
-+|+++|.+|+|||||+++|+... .... . ..+. . ........++...+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 469999999999999999998521 1100 0 0000 0 0112233445566799999999998
Q ss_pred CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
++.......++.+|++++|+|+++.... ....+|..... .+.|+++++||+|+.+.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~--------~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL--------RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh--------cCCCEEEEEECCccCCC
Confidence 8887777788999999999999875432 22344443332 34799999999998654
No 235
>CHL00071 tufA elongation factor Tu
Probab=99.70 E-value=6.1e-16 Score=121.70 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=93.3
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC---C-----cC----CC-ccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---S-----YI----PT-IEDTYR--QVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~-----~~----~~-~~~~~~--~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.+.+.++|+++|.+++|||||+++|++..-.. . .. .. ..+.+. ....+.....++.|+||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 45667999999999999999999998642100 0 00 00 011111 1122333445788999999887
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEA 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~ 143 (200)
+.......+..+|++++|+|+.....-+ ....+..+.. ...| +++++||+|+.+..+... .+...+.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~--------~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ--------VGVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH--------cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 7777777778899999999998654322 2333333332 2267 678999999975433211 1222222
Q ss_pred HHhC-----CcEEEecccCCCc
Q psy8700 144 KMWG-----CHFMETSAKTNHN 160 (200)
Q Consensus 144 ~~~~-----~~~~~vSa~~~~~ 160 (200)
...+ ++++++||.+|.|
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHhCCCCCcceEEEcchhhccc
Confidence 3322 5899999999874
No 236
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=1.7e-15 Score=109.39 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=76.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC--CCCc------CCCc------ccce---eEEEEeC--------CcEEEEEEEeCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF--RESY------IPTI------EDTY---RQVISCN--------KNICTLQITDTT 63 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~--~~~~------~~~~------~~~~---~~~~~~~--------~~~~~~~~~D~~ 63 (200)
.|+++|..++|||||+.+|+...- .... .... +-+. ....... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999975321 1000 0000 0000 0011222 346889999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
|+..+......++..+|++++|+|+.++...+. ...+..... ...|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~--------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK--------ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCCcc
Confidence 999999999999999999999999998765544 222322222 337999999999975
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=3.8e-16 Score=124.54 Aligned_cols=155 Identities=19% Similarity=0.092 Sum_probs=95.2
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCC-----------cCCC------------c------ccce-eEEEE
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RES-----------YIPT------------I------EDTY-RQVIS 49 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~-----------~~~~------------~------~~~~-~~~~~ 49 (200)
+++...++|+++|.+++|||||+.+|+...- ... ...+ . +-+. .....
T Consensus 22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 3456779999999999999999999975321 110 0000 0 0000 11122
Q ss_pred eCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 50 CNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 50 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
+.....++.|+||||+..+.......+..+|++++|+|+..+..-.... .+. +.... ...|++|++||+|+.
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~-l~~~l------g~~~iIvvvNKiD~~ 173 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSF-IATLL------GIKHLVVAVNKMDLV 173 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHH-HHHHh------CCCceEEEEEeeccc
Confidence 3344568999999998887665566678999999999998653222212 222 22222 124789999999987
Q ss_pred cccccCHHHH----HHHHHHh----CCcEEEecccCCCcHHHH
Q psy8700 130 ENREVSAAEG----EAEAKMW----GCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 130 ~~~~~~~~~~----~~~~~~~----~~~~~~vSa~~~~~i~~~ 164 (200)
+..+...... ..+.... ..+++++||++|.|+.++
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 4322111111 1112222 368999999999998764
No 238
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=1.1e-15 Score=100.07 Aligned_cols=105 Identities=26% Similarity=0.313 Sum_probs=66.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh---------hHhhccc
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA---------MQRLSIS 77 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~~~ 77 (200)
+|+++|.+|+|||||+|+|++.... ....+++.......+..++. .+.++||||...... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999985431 12222222222223334444 567999999754311 1223447
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
.+|++++|+|..++.. +....++..+. ...|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK---------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH---------TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh---------cCCCEEEEEcC
Confidence 8999999999877322 23334434442 33899999998
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=1.1e-15 Score=122.97 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=79.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-CcC------C-C----------cccce-eEEEEeCCcEEEEEEEeCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-SYI------P-T----------IEDTY-RQVISCNKNICTLQITDTT 63 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-~~~------~-~----------~~~~~-~~~~~~~~~~~~~~~~D~~ 63 (200)
....+|+++|.+++|||||+++|+... ... ... . + .+.+. .....++...+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 456799999999999999999997411 100 000 0 0 00011 1223344455789999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
|+..+.......+..+|++++|+|+++.... ....+|..... .+.|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--------~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--------RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--------cCCCEEEEEECCcccc
Confidence 9998888778888999999999999875432 23444443332 3489999999999753
No 240
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=3.6e-15 Score=106.39 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=98.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcC---CCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--------hh---Hh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI---PTIEDTYRQVISCNKNICTLQITDTTGSHQFP--------AM---QR 73 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~---~~ 73 (200)
++|+++|.+|+|||||+|++++........ +.+...........+ ..+.++||||..... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999865422211 111111122222333 489999999965431 11 11
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------HHHHHHHHHHhC
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------AAEGEAEAKMWG 147 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~ 147 (200)
......+++++|+++.. .+- .....+..+....+ ...-.++++++|+.|........ ..........++
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg---~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFG---EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhC---hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 12356899999999876 222 22344444555432 11225889999999976543211 123344455556
Q ss_pred CcEEEec-----ccCCCcHHHHHHHHHHHHhc
Q psy8700 148 CHFMETS-----AKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 148 ~~~~~vS-----a~~~~~i~~~~~~i~~~~~~ 174 (200)
-.++..+ +..+.++.++++.|.+++.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5665554 45577899999999998876
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=3.6e-16 Score=116.76 Aligned_cols=142 Identities=20% Similarity=0.263 Sum_probs=87.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcC------CCc----------ccc-eeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYI------PTI----------EDT-YRQVISCNKNICTLQITDTTGSHQFPAM 71 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~------~~~----------~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 71 (200)
+|+++|.+|+|||||+++|+...-..... .+. ..+ ......+......+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999997532110000 000 000 0011122223468899999998877777
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEE
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFM 151 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
....+..+|++++|+|.++...... ...|..+.. ...|+++++||+|+..... ......+....+.+++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~--------~~~p~iivvNK~D~~~~~~--~~~~~~l~~~~~~~~~ 149 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE--------AGIPRIIFINKMDRERADF--DKTLAALQEAFGRPVV 149 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCccCCCCH--HHHHHHHHHHhCCCeE
Confidence 8888999999999999988655433 333433332 3479999999999875421 2222334444555444
Q ss_pred Ee--cccCCCcH
Q psy8700 152 ET--SAKTNHNV 161 (200)
Q Consensus 152 ~v--Sa~~~~~i 161 (200)
.+ ....+.++
T Consensus 150 ~~~ip~~~~~~~ 161 (268)
T cd04170 150 PLQLPIGEGDDF 161 (268)
T ss_pred EEEecccCCCce
Confidence 33 34444443
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=4.2e-15 Score=116.46 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=99.7
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCC---CCcC--------C-C-cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR---ESYI--------P-T-IEDTY--RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~--------~-~-~~~~~--~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.+...++|+++|..++|||||+++|++.... .... + . ..+.+ .....+.....++.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456799999999999999999999863110 0000 0 0 01111 11223333456789999999887
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCcccccCHH---HHHHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETENREVSAA---EGEAEA 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~---~~~~~~ 143 (200)
+.......+..+|++++|+|+.++..- .....+..+.. ...|++ +++||+|+.+..+.... +...+.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~--------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH--------cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 777677778899999999999875332 22333433333 226876 58999999753221111 111222
Q ss_pred HHh-----CCcEEEecccCCC----------cHHHHHHHHHHHH
Q psy8700 144 KMW-----GCHFMETSAKTNH----------NVKELFAELLNLE 172 (200)
Q Consensus 144 ~~~-----~~~~~~vSa~~~~----------~i~~~~~~i~~~~ 172 (200)
... ..+++.+||+++. ++..+++.|.+.+
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 221 3689999999875 4567777776654
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=1.9e-15 Score=112.78 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=87.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCc----------CCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh----
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESY----------IPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA---- 70 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---- 70 (200)
-.++|+++|.+|+|||||+|+|++..+.... .++.. .........++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 4689999999999999999999987654321 22221 12223334466678999999999433210
Q ss_pred ---h-------------------Hhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 71 ---M-------------------QRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 71 ---~-------------------~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
+ ....+. ++|+++++++.+.. .+.... +..+.... ...|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~------~~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLS------KRVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHh------ccCCEEEEEECC
Confidence 0 002222 36788888876642 121111 22233333 247999999999
Q ss_pred CCCcccccC--HHHHHHHHHHhCCcEEEecccC
Q psy8700 127 DETENREVS--AAEGEAEAKMWGCHFMETSAKT 157 (200)
Q Consensus 127 Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~ 157 (200)
|+....+.. ...........++++|......
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 997643322 2334555667788888776543
No 244
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=2.5e-15 Score=111.75 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=75.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCC-CC------------cCC---Ccccce-eEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFR-ES------------YIP---TIEDTY-RQVISCNKNICTLQITDTTGSHQFPAM 71 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~-~~------------~~~---~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~ 71 (200)
+|+++|.+++|||||+++|+...-. .. +.+ ..+.+. .....+.-...++.+|||||...+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999742110 00 000 000000 111222223468899999999888888
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
....++.+|++++|+|+.+...-.. ...+..+.. ...|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--------~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--------YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 8889999999999999987543332 344444433 3379999999999875
No 245
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=109.22 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=106.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc-CCCcccce-eEEEEeCCcEEEEEEEeCCCCCC-------ChhhHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY-IPTIEDTY-RQVISCNKNICTLQITDTTGSHQ-------FPAMQRL 74 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~ 74 (200)
+..+++|+++|..|+|||||+|+|..+...+.. .+...+.. .-....+++ .+.+||+||..+ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence 446789999999999999999999975543221 22222111 111122333 699999999654 6677788
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-------ccCHHHHHHHH----
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-------EVSAAEGEAEA---- 143 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~---- 143 (200)
++.+.|.+++++++.|+.=--+...+...+... .+.++++++|++|...+- .........+.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-------~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILG-------LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhc-------cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 899999999999999876433333433333332 337999999999975430 01111111111
Q ss_pred ----HHh-C-CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 144 ----KMW-G-CHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 144 ----~~~-~-~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+.. . -|++.+|...+.|++++...++..+..
T Consensus 187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 111 1 278889999999999999999998753
No 246
>KOG0077|consensus
Probab=99.66 E-value=6.9e-16 Score=102.76 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=116.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+.-|++++|-.|+|||||++.|..+... .+.||...+.+.. .-....++-.|.+|+..-+..+..|+..++++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l---~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEEL---SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHh---eecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4569999999999999999999887753 3455554443322 22345789999999998899999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HHHHHh-----------C---CcE
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AEAKMW-----------G---CHF 150 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~-----------~---~~~ 150 (200)
+|+.|.+.+......+..+...- .....|++|.+||+|.+.....++.... .+.+.. + ..+
T Consensus 95 vda~d~er~~es~~eld~ll~~e----~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDE----SLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHH----HHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 99999999999888877776655 3577999999999998876532222111 111111 1 136
Q ss_pred EEecccCCCcHHHHHHHHHHH
Q psy8700 151 METSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~ 171 (200)
|.||...+.+--+.|.|+..+
T Consensus 171 fmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEccCccceeeeehhhh
Confidence 778888888877777776654
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=1.6e-15 Score=126.62 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=81.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--------CCC--c---CC---Ccccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--------RES--Y---IP---TIEDTY-RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--------~~~--~---~~---~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
+...+|+++|..++|||||+++|+...- ... . .+ ....+. .....+......+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999985321 000 0 00 000001 11112233456899999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+......+++.+|++++|+|.++....... ..|..+.. ...|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~--------~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR--------YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh--------cCCCEEEEEECCCCCC
Confidence 888889999999999999999987665543 33433332 3479999999999864
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.65 E-value=1.2e-15 Score=119.83 Aligned_cols=148 Identities=20% Similarity=0.132 Sum_probs=90.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCCC-----------cCCC------------c------ccce-eEEEEeCCcEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT--FRES-----------YIPT------------I------EDTY-RQVISCNKNIC 55 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~--~~~~-----------~~~~------------~------~~~~-~~~~~~~~~~~ 55 (200)
++|+++|..++|||||+.+|+... .... ...+ . +-+. .....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997432 1110 0000 0 0000 01122233445
Q ss_pred EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC
Q psy8700 56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS 135 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 135 (200)
++.|+||||+..+.......+..+|++++|+|+..+...+.. ..+..+.. . ...++++++||+|+.+..+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~-~------~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASL-L------GIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHH-c------CCCcEEEEEEecccccchHHH
Confidence 889999999988876666778899999999999876433222 22222222 2 124688999999986532111
Q ss_pred H----HHHHHHHHHhC---CcEEEecccCCCcHHH
Q psy8700 136 A----AEGEAEAKMWG---CHFMETSAKTNHNVKE 163 (200)
Q Consensus 136 ~----~~~~~~~~~~~---~~~~~vSa~~~~~i~~ 163 (200)
. .+...+....+ ++++++||++|.|+.+
T Consensus 153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1 11111222233 4799999999999875
No 249
>PLN03127 Elongation factor Tu; Provisional
Probab=99.64 E-value=1.4e-14 Score=114.77 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC------CCCCCc--CCC-----cccce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKG------TFRESY--IPT-----IEDTY--RQVISCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~------~~~~~~--~~~-----~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~ 68 (200)
+-+.++|+++|..++|||||+++|.+. ...-.+ ... ..+.+ .....++....++.|+||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 445689999999999999999999632 100000 000 01111 112334445568899999999888
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCHH---HHHHHHH
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSAA---EGEAEAK 144 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~---~~~~~~~ 144 (200)
.......+..+|++++|+|+.++..-+. ...+..+.. ...| +++++||+|+.+..+.... +...+..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--------~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--------VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--------cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 7766666778999999999986533222 333333332 2367 4788999999753321111 1112222
Q ss_pred Hh-----CCcEEEeccc---CCCc-------HHHHHHHHHHHHh
Q psy8700 145 MW-----GCHFMETSAK---TNHN-------VKELFAELLNLEK 173 (200)
Q Consensus 145 ~~-----~~~~~~vSa~---~~~~-------i~~~~~~i~~~~~ 173 (200)
.. .++++.+|+. ++.| +..+++.+.+.+.
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 21 2578888875 4544 6777887777653
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=9.8e-15 Score=117.61 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=79.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC-CcC-------CCc----------ccce-eEEEEeCCcEEEEEEEeC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-SYI-------PTI----------EDTY-RQVISCNKNICTLQITDT 62 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-~~~-------~~~----------~~~~-~~~~~~~~~~~~~~~~D~ 62 (200)
-.+..+|+++|.+++|||||+++|+... ... ... .+. +.+. .....++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 3566799999999999999999986411 100 000 000 1111 122344556679999999
Q ss_pred CCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
||+..+.......+..+|++++|+|..+... .....+|..... .+.|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--------~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--------RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--------cCCCEEEEEECcccc
Confidence 9998887777778889999999999987522 223444543332 347999999999974
No 251
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.64 E-value=5.1e-15 Score=117.25 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=98.2
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCC----c-----------------CCCcc------cce-eEEEEeC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES----Y-----------------IPTIE------DTY-RQVISCN 51 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~----~-----------------~~~~~------~~~-~~~~~~~ 51 (200)
..+-+.++|+++|..++|||||+.+|+... .... + ....+ -+. .....+.
T Consensus 2 ~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~ 81 (447)
T PLN00043 2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE 81 (447)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence 445567899999999999999999987421 1000 0 00000 000 1122344
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH---H---HHHHHHHHHHHHHhCCCCCCCCC-cEEEEee
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS---L---EELRPIWEVIRETKGGANELASI-PIMLVGN 124 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~n 124 (200)
.....+.++|+||+.+|.......+..+|++++|+|+++..- + ......+..+... .. +++|++|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~--------gi~~iIV~vN 153 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL--------GVKQMICCCN 153 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc--------CCCcEEEEEE
Confidence 556789999999999999988999999999999999987421 0 2333333333222 24 5788999
Q ss_pred CCCCCccc----cc--CHHHHHHHHHHhC-----CcEEEecccCCCcHHH
Q psy8700 125 KCDETENR----EV--SAAEGEAEAKMWG-----CHFMETSAKTNHNVKE 163 (200)
Q Consensus 125 K~Dl~~~~----~~--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~ 163 (200)
|+|+.... .. ...+...+.+..+ ++|+++||++|+|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99976211 00 1122333444444 5799999999999854
No 252
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=4e-15 Score=117.69 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=102.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC---Cc----CCCcccceeE----------EE--EeC-------------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---SY----IPTIEDTYRQ----------VI--SCN------------- 51 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~~----~~~~~~~~~~----------~~--~~~------------- 51 (200)
+...+.|+++|....|||||+.+|.+..... .. ....+..... .. ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4567899999999999999999998632210 00 0000110000 00 000
Q ss_pred ---CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 52 ---KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 52 ---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
.....+.|+|+||++.+.......+..+|++++|+|+.++....+....+..+ ... .-.|++|++||+|+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l------gi~~iIVvlNKiDl 183 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM------KLKHIIILQNKIDL 183 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc------CCCcEEEEEecccc
Confidence 01247899999999888777777788999999999998742112222333222 222 22478999999999
Q ss_pred CcccccCHH--HHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 129 TENREVSAA--EGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 129 ~~~~~~~~~--~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.+....... +...+... .+.+++++||++|.|++.+++.|.+.+..
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 753322111 11111111 25689999999999999999999976643
No 253
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=6.3e-15 Score=116.82 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=97.1
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhC--CCCCCc---------------------CCCc----c-cce--eEEEEe
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRESY---------------------IPTI----E-DTY--RQVISC 50 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~---------------------~~~~----~-~~~--~~~~~~ 50 (200)
|+.+-+.++|+++|..++|||||+.+|+.. ...... .... . +.+ .....+
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 455677899999999999999999999752 111000 0000 0 000 112233
Q ss_pred CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH------HHHHHHHHHHHHHHhCCCCCCCCCc-EEEEe
Q psy8700 51 NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS------LEELRPIWEVIRETKGGANELASIP-IMLVG 123 (200)
Q Consensus 51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 123 (200)
+.....+.|+||||+.+|.......+..+|++++|+|+.++.. -.+....|..+.... .| ++|++
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g--------i~~iiv~v 152 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG--------VKQMIVCI 152 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC--------CCeEEEEE
Confidence 4455789999999999988888888889999999999987531 023333343333322 45 67999
Q ss_pred eCCCCCc----ccccCH--HHHHHHHHHh-----CCcEEEecccCCCcHHH
Q psy8700 124 NKCDETE----NREVSA--AEGEAEAKMW-----GCHFMETSAKTNHNVKE 163 (200)
Q Consensus 124 nK~Dl~~----~~~~~~--~~~~~~~~~~-----~~~~~~vSa~~~~~i~~ 163 (200)
||+|... ...... .+........ .++++++|+.+|+|+.+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999532 111111 1122222222 35799999999999864
No 254
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=2.8e-14 Score=114.55 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=71.9
Q ss_pred EEEEEEeCCCCCCC-----hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 55 CTLQITDTTGSHQF-----PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 55 ~~~~~~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.++.|+||||.... .......+..+|+++||+|.....+..+ ......+.... ...|+++|+||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~------K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG------QSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC------CCCCEEEEEEcccCC
Confidence 46789999997642 2234457889999999999987543333 22333333221 225999999999986
Q ss_pred cccccCHHHHHHHHH-H---hC---CcEEEecccCCCcHHHHHHHHHH
Q psy8700 130 ENREVSAAEGEAEAK-M---WG---CHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~-~---~~---~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
+...........+.. . .+ ..+|++||+.|.|++.+++.|..
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 433222222222221 1 12 26999999999999999999988
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=99.63 E-value=6.1e-15 Score=117.37 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=92.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC------CCCc------CCCc-ccce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF------RESY------IPTI-EDTY--RQVISCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~------~~~~-~~~~--~~~~~~~~~~~~~~~~D~~G~~~~ 68 (200)
+.+.++|+++|.+++|||||+++|+...- ...+ .... .+.+ .....++.....+.++|+||+..|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 44568999999999999999999985211 0000 0000 0111 112223334458899999999888
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCHH---HHHHHHH
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSAA---EGEAEAK 144 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~---~~~~~~~ 144 (200)
.......+..+|++++|+|+.+...-+. ..++..+... ..| +++++||+|+.+..+.... +...+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--------GVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--------CCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 7777777788999999999987643333 3444333332 266 7789999999753322111 2222222
Q ss_pred Hh-----CCcEEEecccCCCc
Q psy8700 145 MW-----GCHFMETSAKTNHN 160 (200)
Q Consensus 145 ~~-----~~~~~~vSa~~~~~ 160 (200)
.. ..+++.+|+.++.+
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred hcCCCcCcceEEEEEcccccc
Confidence 22 45899999988854
No 256
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.62 E-value=1.5e-14 Score=110.19 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=85.2
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCCh----------hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSR----------QSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
..+.+.+||++|+...+..|..++.++++++||+|+++- ..+......+..+.... ...+.|++++
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~----~~~~~pill~ 234 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR----WFANTSIILF 234 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc----cccCCCEEEE
Confidence 346788999999999999999999999999999999873 45555555555555443 2467899999
Q ss_pred eeCCCCCccc----------------ccCHHHHHHHHH-----H-----hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 123 GNKCDETENR----------------EVSAAEGEAEAK-----M-----WGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 123 ~nK~Dl~~~~----------------~~~~~~~~~~~~-----~-----~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+||.|+...+ ......+..+.. . ..+..+.++|.+..++..+|+.+.+.+...+
T Consensus 235 ~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 235 LNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred ccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9999963221 111122222211 1 1234566889999999999999998876544
No 257
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=2e-14 Score=112.01 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=55.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEE---------------------eC-CcEEEEEEEeCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVIS---------------------CN-KNICTLQITDTT 63 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~D~~ 63 (200)
.++|+++|.||+|||||+|+|++..... .|..++-........ .+ .....+++||+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 3689999999999999999999866532 222111111111111 11 123679999999
Q ss_pred CC----CCChhhHhhc---cccCCEEEEEeeCC
Q psy8700 64 GS----HQFPAMQRLS---ISKGHAFILVYSCT 89 (200)
Q Consensus 64 G~----~~~~~~~~~~---~~~~~~~i~v~d~~ 89 (200)
|. +....+...+ ++++|++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 95 3344555556 78899999999996
No 258
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=2.2e-15 Score=104.38 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=72.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEe-CCcEEEEEEEeCCCCCCChhhHhh---ccccCCEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC-NKNICTLQITDTTGSHQFPAMQRL---SISKGHAF 82 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~~~~ 82 (200)
.-.|+++|+.|||||+|+.+|..+...++..+..+.. ...+ ......+.++|+||+.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 4568999999999999999999986544443332111 1111 223347999999999987764444 47889999
Q ss_pred EEEeeCCC-hhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 83 ILVYSCTS-RQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 83 i~v~d~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
|||+|.+. ...+.....++ ..+..... .....|++|+.||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~---~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEV---QKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHC---CTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhh---ccCCCCEEEEEeCcccccc
Confidence 99999974 33444444443 33333332 2467899999999998653
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.61 E-value=1.1e-14 Score=120.57 Aligned_cols=152 Identities=19% Similarity=0.124 Sum_probs=91.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCC---------cCCCc--c-c-----------------ce-eEEEEeC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RES---------YIPTI--E-D-----------------TY-RQVISCN 51 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~---------~~~~~--~-~-----------------~~-~~~~~~~ 51 (200)
....++|+++|.+++|||||+++|+...- ... ..... + . +. .....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999986321 100 00000 0 0 00 0011222
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
....++.|+||||+..+.......+..+|++++|+|+.++..-+. ...+..+.. . ...|++|++||+|+.+.
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~-~------~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL-L------GIRHVVLAVNKMDLVDY 172 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH-h------CCCeEEEEEEecccccc
Confidence 334578899999988776555566788999999999976543222 222222222 2 22578899999998642
Q ss_pred ccc--CH--HHHHHHHHHhC---CcEEEecccCCCcHHH
Q psy8700 132 REV--SA--AEGEAEAKMWG---CHFMETSAKTNHNVKE 163 (200)
Q Consensus 132 ~~~--~~--~~~~~~~~~~~---~~~~~vSa~~~~~i~~ 163 (200)
.+. .. .+...+....+ .+++++||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 211 11 11111222333 4699999999999874
No 260
>KOG0462|consensus
Probab=99.59 E-value=3.1e-14 Score=111.28 Aligned_cols=163 Identities=19% Similarity=0.160 Sum_probs=116.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----C----------cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-----S----------YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
++--+++++....-|||||..+|+.-. ..+ + ..-|.-.......+.+++.+.+.++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 445578899999999999999997522 111 0 01111111222333457789999999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHHHHHHh
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEAEAKMW 146 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~ 146 (200)
+.......+..++++++|+|+..+-.-+.+..++..+. .+..+|.|+||+|++..+.... .+........
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---------AGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 99988899999999999999998776666666664444 3367899999999987653222 2222333334
Q ss_pred CCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 147 GCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 147 ~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
..+.+.+||+.|.|+.++++.|++.+....
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 458999999999999999999999886543
No 261
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.58 E-value=8.4e-15 Score=112.33 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=83.7
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVG 123 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 123 (200)
...+.+||++|+...+..|..++.++++++||+|+++ ...+......+..+.... ...+.|++|++
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~----~~~~~piil~~ 258 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR----WFANTSIILFL 258 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc----cccCCcEEEEE
Confidence 3567899999999999999999999999999999996 234555555555555433 35678999999
Q ss_pred eCCCCCccc--------------c-cCHHHHHHHH-----HHh------CCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 124 NKCDETENR--------------E-VSAAEGEAEA-----KMW------GCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 124 nK~Dl~~~~--------------~-~~~~~~~~~~-----~~~------~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
||.|+.... . ........+. ... .+..+.++|.+-.++..+|+.+.+.+..++
T Consensus 259 NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 259 NKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred ecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 999974321 0 0111222221 111 134566889999999999999988876554
No 262
>KOG1191|consensus
Probab=99.58 E-value=1.8e-14 Score=111.42 Aligned_cols=167 Identities=22% Similarity=0.283 Sum_probs=105.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCCC-Ch--------hhHh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSHQ-FP--------AMQR 73 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~-~~--------~~~~ 73 (200)
...++|+++|+||+|||||+|.|..... ..++..+++++. ...++-..+.+.+.||+|.-+ .. ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 3468999999999999999999998664 445555555543 333344456899999999544 11 2333
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCC----CCCCCCcEEEEeeCCCCCcc-cccCHHHHHHHHHHh--
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGA----NELASIPIMLVGNKCDETEN-REVSAAEGEAEAKMW-- 146 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~-- 146 (200)
..++.+|++++|+|+...+.-+.+ .....+....... +.....|++++.||.|+... .+.... ...+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~-~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~ 421 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDL-KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGR 421 (531)
T ss_pred HHHhhcCEEEEEecccccccccch-HHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccC
Confidence 466679999999999543322222 2222222222111 12345799999999999765 222211 11112211
Q ss_pred -CCc-EEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 147 -GCH-FMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 147 -~~~-~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
..+ ..++|+++++|+..+...+.+.+...
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 234 44599999999999999998877543
No 263
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.4e-13 Score=106.57 Aligned_cols=159 Identities=24% Similarity=0.295 Sum_probs=111.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...=+.++|...-|||||+.++-..+.....-..+.+.. .+.+..+ +....+.|+||||++.|..++..-.+-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 455688999999999999999987665444333333222 3344433 13347999999999999999988888899999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH------HHHhC--CcEEEecc
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE------AKMWG--CHFMETSA 155 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~--~~~~~vSa 155 (200)
+|++++|.-.-+.++. +.... ..+.|++|++||+|.++.+.. ....++ ...++ ..++++||
T Consensus 84 LVVa~dDGv~pQTiEA----I~hak-----~a~vP~iVAiNKiDk~~~np~--~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 84 LVVAADDGVMPQTIEA----INHAK-----AAGVPIVVAINKIDKPEANPD--KVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEccCCcchhHHHH----HHHHH-----HCCCCEEEEEecccCCCCCHH--HHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 9999998654444333 33333 255999999999999854321 111111 12232 36999999
Q ss_pred cCCCcHHHHHHHHHHHHhcc
Q psy8700 156 KTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~~ 175 (200)
++|.|+.++++.+.-...-.
T Consensus 153 ~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 153 KTGEGIDELLELILLLAEVL 172 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988766433
No 264
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.57 E-value=5.1e-14 Score=106.85 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
.+.+.|+||+|....... ....+|.++++.+...++.++... ..+.+ ..-++|+||+|+.+...
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----------~aDIiVVNKaDl~~~~~ 211 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME----------LADLIVINKADGDNKTA 211 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh----------hhheEEeehhcccchhH
Confidence 468899999996532222 455799999997645554443322 21222 22389999999875432
Q ss_pred cCH--HHHHHHHHH-------hCCcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhh
Q psy8700 134 VSA--AEGEAEAKM-------WGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK 183 (200)
Q Consensus 134 ~~~--~~~~~~~~~-------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 183 (200)
... .+....... +..+++.+||+++.|++++++.|.+.+........+..
T Consensus 212 a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 212 ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 111 111111111 23589999999999999999999998765544444433
No 265
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=9e-14 Score=116.08 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=79.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-C---cCC--C---------cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-S---YIP--T---------IEDTY--RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~---~~~--~---------~~~~~--~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
++.-+|+++|.+++|||||+++|+...-.. . ... + ..+++ .....+.-...++.+|||||+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 345699999999999999999997422100 0 000 0 00111 11112222346899999999998
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
+.......++.+|++++|+|+.+....+. ..+|..+.. ...|+++++||+|+.+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~--------~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR--------YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH--------cCCCEEEEEECCCCCCCC
Confidence 88888889999999999999988655443 334433332 337999999999987543
No 266
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.55 E-value=2.3e-13 Score=101.55 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=72.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhh-------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRL------- 74 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~------- 74 (200)
..+.++|+++|.+|+||||++|++++..... ...+............ ....+.++||||..+.......
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 4578999999999999999999999865321 1111111111111122 3458999999997754322111
Q ss_pred cc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 75 SI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 75 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
++ ...|+++||..++.......-...+..+....+ ..--.+++|++|+.|...+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG---~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG---KDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh---hhhhccEEEEEECCccCCC
Confidence 11 157999999665432211122334444544443 1122578999999997643
No 267
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=2.2e-13 Score=113.76 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=77.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCc--CCC------------cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESY--IPT------------IEDTY--RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~--~~~------------~~~~~--~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.+..+|+++|.+++|||||+++|+...-. ... ... ..+.+ .....+.-...++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 34678999999999999999999752110 000 000 00111 01111222345899999999887
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+.......+..+|++++|+|+.++...+. ...+..+.. ...|+++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~--------~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK--------YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 77778888889999999999987654333 334433333 3379999999999864
No 268
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=1.7e-13 Score=100.69 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=73.3
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh---hh------
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP---AM------ 71 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~------ 71 (200)
+.+.+++|+++|.+|+|||||+|+|++...... +.+++..........+ ...+.+|||||..... ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 457789999999999999999999998654221 2222222222222223 3578999999966541 11
Q ss_pred -Hhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 72 -QRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 72 -~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
...++. ..+++++|..++....-..-...+..+.+..+ ..--.++++|.||+|...+
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG---~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG---PSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC---hhhHhCEEEEEeCCccCCC
Confidence 122332 46888888766543211111234444444432 0111479999999998543
No 269
>KOG0090|consensus
Probab=99.54 E-value=1.4e-13 Score=95.79 Aligned_cols=118 Identities=14% Similarity=0.295 Sum_probs=81.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccc---cCCE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSIS---KGHA 81 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~ 81 (200)
+..-.|+++|+.+||||+|+-.|..+..+..+.+..+..- ....... .+.++|.||+.+.+.....++. .+.+
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 3446799999999999999999999876555554444221 2222223 3899999999988877777777 7899
Q ss_pred EEEEeeCCC-hhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 82 FILVYSCTS-RQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 82 ~i~v~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
++||+|... .....+. +.++..+..... ....+|++|+.||.|+.
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~---~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRV---KKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhcc---ccCCCCEEEEecchhhh
Confidence 999999763 2223333 333344444321 24668999999999984
No 270
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.53 E-value=3.2e-13 Score=97.37 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=98.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCC---CcccceeEEEEeCCcEEEEEEEeCCCCCCCh----h----hH---h
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP---TIEDTYRQVISCNKNICTLQITDTTGSHQFP----A----MQ---R 73 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~----~~---~ 73 (200)
++|+++|..||||||++|.+++......... .+..........++ ..+.++||||..... . +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998775333221 11222233334455 478999999943211 1 11 1
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-------HHHHHHHHHh
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-------AEGEAEAKMW 146 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-------~~~~~~~~~~ 146 (200)
......+++++|+.+. +-+- .-...+..+....+. .--..++||+|..|......... .....+.+..
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~-~~~~~l~~l~~~FG~---~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTE-EDREVLELLQEIFGE---EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SH-HHHHHHHHHHHHHCG---GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCeEEEEEEecC-cchH-HHHHHHHHHHHHccH---HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc
Confidence 1334579999999988 2222 234455556665541 12247899999998766543211 1133445556
Q ss_pred CCcEEEeccc------CCCcHHHHHHHHHHHHhccc
Q psy8700 147 GCHFMETSAK------TNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 147 ~~~~~~vSa~------~~~~i~~~~~~i~~~~~~~~ 176 (200)
+-.|+..+.+ ....+.++|+.|.+++.+..
T Consensus 154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 7788887766 33579999999999887765
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.52 E-value=1.4e-13 Score=87.64 Aligned_cols=137 Identities=22% Similarity=0.230 Sum_probs=94.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCC----CCChhhHhhccccCCEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS----HQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~~~~~~~i 83 (200)
-||+++|..|+|||||.++|-+... .|..+.. +.++. --.+||||. ..+..-.....+.+|.++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQA------ve~~d----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQA------VEFND----KGDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh--hhcccce------eeccC----ccccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 3799999999999999999987443 3322221 11111 125899993 233344455677899999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVK 162 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~ 162 (200)
+|-.++++++.-. .- +. ..-..|+|=|++|+|+.+..+ ......+..+.|. ++|++|+.++.|+.
T Consensus 70 ~v~~and~~s~f~--p~---f~-------~~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~ 135 (148)
T COG4917 70 YVHAANDPESRFP--PG---FL-------DIGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVE 135 (148)
T ss_pred eeecccCccccCC--cc---cc-------cccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHH
Confidence 9999998865211 10 11 123357999999999987443 3445566666676 89999999999999
Q ss_pred HHHHHHHH
Q psy8700 163 ELFAELLN 170 (200)
Q Consensus 163 ~~~~~i~~ 170 (200)
++++.+..
T Consensus 136 ~l~~~L~~ 143 (148)
T COG4917 136 ELVDYLAS 143 (148)
T ss_pred HHHHHHHh
Confidence 99998765
No 272
>KOG1490|consensus
Probab=99.51 E-value=1.2e-13 Score=106.99 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=118.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----hhh-----Hh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----PAM-----QR 73 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~-----~~ 73 (200)
.++.-.++++|.|++|||||+|.+........ |.-|+-..+ ..+++-.-..++++||||.-.. +.. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~--vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL--VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhh--hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 45667899999999999999998877553222 222221111 2233445578999999994321 111 11
Q ss_pred hccccCCEEEEEeeCCC--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH---HHHHHhCC
Q psy8700 74 LSISKGHAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE---AEAKMWGC 148 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~ 148 (200)
...+=-.+|+|++|++. +.++...-.++..+.... .+.|+|+|+||+|+......+..... ......++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF------aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF------ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh------cCCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence 11222367888889874 567777777777777766 66899999999999877666554322 23334457
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhccchhHHHhhh
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 184 (200)
+++.+|+.+..|+.++-....+.+....+...+.-+
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~ 352 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSE 352 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999988877776665543
No 273
>PRK13768 GTPase; Provisional
Probab=99.50 E-value=3.3e-13 Score=99.72 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=70.2
Q ss_pred EEEEEeCCCCCCC---hhhHhhccc---c--CCEEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 56 TLQITDTTGSHQF---PAMQRLSIS---K--GHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 56 ~~~~~D~~G~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
.+.+||+||+.+. +..+..+++ . .+++++++|............ ++..+.... ..+.|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhH
Confidence 6899999997653 333332222 2 789999999965443333222 221111111 1348999999999
Q ss_pred CCCcccccCHHHH--H------------------------HHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 127 DETENREVSAAEG--E------------------------AEAKMWG--CHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 127 Dl~~~~~~~~~~~--~------------------------~~~~~~~--~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
|+.+..+...... . ......+ .+++++|++++.|+++++++|.+.+.
T Consensus 173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9976543211110 0 0111223 48899999999999999999998774
No 274
>KOG1145|consensus
Probab=99.50 E-value=1.4e-12 Score=102.30 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=110.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+.+.=|-++|...-|||||+.+|-...........+.... ...+.+. ..-.+.|.||||+..|..++..-..-+|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 3456678999999999999999987665433333333222 1233333 2248999999999999999998888899999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-----HHHHHHHhC-CcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-----GEAEAKMWG-CHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-----~~~~~~~~~-~~~~~vSa~~ 157 (200)
+|+.++|.-.-+..+. +.... ..+.|++|.+||+|.++........ ........| .+++++||++
T Consensus 230 LVVAadDGVmpQT~Ea----IkhAk-----~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEA----IKHAK-----SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEccCCccHhHHHH----HHHHH-----hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 9999998755444333 44444 3669999999999987654211110 011112222 4899999999
Q ss_pred CCcHHHHHHHHHHHHh
Q psy8700 158 NHNVKELFAELLNLEK 173 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~ 173 (200)
|.|++.+-+.+.-...
T Consensus 301 g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAE 316 (683)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999998877653
No 275
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.49 E-value=1.9e-14 Score=103.82 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=93.2
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhh---------------------------CCCCCCcCCCcccceeEEEEe-----
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVK---------------------------GTFRESYIPTIEDTYRQVISC----- 50 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~---------------------------~~~~~~~~~~~~~~~~~~~~~----- 50 (200)
+..+.+.|.+.|+||+|||||+++|.. +..+-......+..|--....
T Consensus 25 ~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 25 HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLG 104 (266)
T ss_dssp GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence 345678999999999999999999853 111101111112222111111
Q ss_pred -------------CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy8700 51 -------------NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117 (200)
Q Consensus 51 -------------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (200)
+...+.+.|++|.|.-. .-.....-+|.+++|....-.+.++.+.. -+.+..+
T Consensus 105 Gls~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEiaD-------- 170 (266)
T PF03308_consen 105 GLSRATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKA---GIMEIAD-------- 170 (266)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-T---THHHH-S--------
T ss_pred CccHhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhh---hhhhhcc--------
Confidence 11335788999988332 11234556899999998776655554333 3344343
Q ss_pred cEEEEeeCCCCCcccccCHHHHHHHH------HHhCCcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhhh
Q psy8700 118 PIMLVGNKCDETENREVSAAEGEAEA------KMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184 (200)
Q Consensus 118 p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 184 (200)
++|+||.|..............+. ..+..|++.+||.++.|++++++.|.+..........++..
T Consensus 171 --i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~~r 241 (266)
T PF03308_consen 171 --IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELEER 241 (266)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred --EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHHHH
Confidence 999999996543321111111111 11345899999999999999999999877655555444444
No 276
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=3.9e-13 Score=112.23 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=71.8
Q ss_pred ECCCCCCHHHHHHHHhhCCCC--C--CcCC--Cc----------ccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhc
Q psy8700 13 FGAGGVGKSSLVLRFVKGTFR--E--SYIP--TI----------EDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLS 75 (200)
Q Consensus 13 ~G~~~~GKSsli~~l~~~~~~--~--~~~~--~~----------~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 75 (200)
+|.+++|||||+++|+...-. . .... +. +.+. .....+....+.+.+|||||+..+.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999653210 0 0000 00 0000 1111222345689999999998887788888
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+..+|++++|+|.++....... ..|..+.. .+.|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~--------~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK--------YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 9999999999999886654443 33333332 3479999999999853
No 277
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.47 E-value=5.5e-13 Score=97.70 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=95.9
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCC-----------CCCCcCCC----------------cccceeEEE------
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT-----------FRESYIPT----------------IEDTYRQVI------ 48 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~-----------~~~~~~~~----------------~~~~~~~~~------ 48 (200)
|...+...|.+.|.||+|||||+..|...- .++....+ .++.|--..
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 455667899999999999999999985310 00111111 111110000
Q ss_pred ------------EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy8700 49 ------------SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116 (200)
Q Consensus 49 ------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (200)
.++...+.+.|++|.|.-.- -.....-+|.+++|.-..-.+.++.+ ..-+.+..+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~i---K~GimEiaD------- 192 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGI---KAGIMEIAD------- 192 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHH---Hhhhhhhhh-------
Confidence 01224458889999883321 12344467888888766655544444 334444443
Q ss_pred CcEEEEeeCCCCCcccccCHHHH--HHH------HHHhCCcEEEecccCCCcHHHHHHHHHHHHhccchhH
Q psy8700 117 IPIMLVGNKCDETENREVSAAEG--EAE------AKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179 (200)
Q Consensus 117 ~p~ivv~nK~Dl~~~~~~~~~~~--~~~------~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~ 179 (200)
++|+||+|..+...-..... ... ...+..+++.+||..|.|++++++.|.+.........
T Consensus 193 ---i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 193 ---IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred ---eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999654321111111 111 1234468999999999999999999999775544433
No 278
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7e-13 Score=100.94 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=99.8
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------C-----cCC----------Ccccce-eEEEEeC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE------------S-----YIP----------TIEDTY-RQVISCN 51 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------------~-----~~~----------~~~~~~-~~~~~~~ 51 (200)
..+-+.++++++|...+|||||+-+|+... +++ . +.. ..+.+. .....++
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 445667999999999999999999986421 110 0 000 001111 1233456
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHH-----HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE-----ELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
...+.+.++|+||+..|-.-...-+..||+.|+|+|+.+.+... ........+.... .-...+|++||+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl------Gi~~lIVavNKM 155 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL------GIKQLIVAVNKM 155 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc------CCceEEEEEEcc
Confidence 66678999999998877777777888999999999999874111 1111122233333 235689999999
Q ss_pred CCCcccccCHH----HHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy8700 127 DETENREVSAA----EGEAEAKMWG-----CHFMETSAKTNHNVKELF 165 (200)
Q Consensus 127 Dl~~~~~~~~~----~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~ 165 (200)
|+.+-++..-. +...+.+..| ++|+++|+..|+|+.+.=
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 99863221111 1122333333 469999999999976543
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.46 E-value=3.6e-12 Score=90.82 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=63.0
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV 134 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 134 (200)
....++++.|..--..... . -++.++.|+|+.+.+..... ....+ . ..-++++||+|+.+....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~~--~~~qi-~----------~ad~~~~~k~d~~~~~~~ 155 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPRK--GGPGI-T----------RSDLLVINKIDLAPMVGA 155 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhhh--hHhHh-h----------hccEEEEEhhhccccccc
Confidence 4667888888321111111 1 15779999999876653221 01111 1 123899999999753222
Q ss_pred CHHHHHHHHH--HhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 135 SAAEGEAEAK--MWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 135 ~~~~~~~~~~--~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.........+ ..+.+++++|+++|.|+.++++++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 2222233333 3456999999999999999999999765
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=5.6e-13 Score=111.64 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC---------------CCCC---cCCCcccce-eEEEEeCCcEEEEEEEeCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT---------------FRES---YIPTIEDTY-RQVISCNKNICTLQITDTTG 64 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G 64 (200)
.....+|+++|..++|||||+++|+... +.+. ...+..... ......+...+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 4456799999999999999999997521 1000 111111111 11223456678999999999
Q ss_pred CCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+..+.......+..+|++++|+|+.+....+. ...|..+.. ...|+++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~--------~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK--------ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH--------cCCCEEEEEEChhccc
Confidence 99988888889999999999999987543332 222322222 3368899999999853
No 281
>PTZ00258 GTP-binding protein; Provisional
Probab=99.45 E-value=4.9e-12 Score=97.87 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQ 67 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~ 67 (200)
...-.+|+++|.||+|||||+|+|.+..... +|..++-......+.+.+. ..+++++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4566899999999999999999997755422 2222221222223322221 23689999999542
Q ss_pred C----hhhH---hhccccCCEEEEEeeCC
Q psy8700 68 F----PAMQ---RLSISKGHAFILVYSCT 89 (200)
Q Consensus 68 ~----~~~~---~~~~~~~~~~i~v~d~~ 89 (200)
- ..+. ...++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1222 23456799999999973
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=3.4e-12 Score=92.82 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=83.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
......|+++|.+|+|||||++.+.+...... .....++.. + .......+.++||||.. .........+|+++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-~~~~~g~i~--i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-ISDIKGPIT--V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-cccccccEE--E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 35568899999999999999999987422111 111122211 1 11234578999999843 22233467899999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEEeeCCCCCcccc-cCH--HHH-HHHHH--HhCCcEEEeccc
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI-MLVGNKCDETENRE-VSA--AEG-EAEAK--MWGCHFMETSAK 156 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~--~~~-~~~~~--~~~~~~~~vSa~ 156 (200)
+++|......... ..++..+... ..|. ++|+||+|+.+... ... ... ..+.. ..+.+++.+||+
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~--------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH--------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc--------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 9999986544333 2344444332 2564 45999999874322 111 111 11221 234589999998
Q ss_pred CCC
Q psy8700 157 TNH 159 (200)
Q Consensus 157 ~~~ 159 (200)
++-
T Consensus 180 ~~~ 182 (225)
T cd01882 180 VHG 182 (225)
T ss_pred cCC
Confidence 874
No 283
>KOG1532|consensus
Probab=99.44 E-value=1.6e-13 Score=99.09 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=69.5
Q ss_pred EEEEEEeCCCCCC------ChhhHhhccccC--CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 55 CTLQITDTTGSHQ------FPAMQRLSISKG--HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 55 ~~~~~~D~~G~~~------~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
....++||||+.+ ...+....+... -++++|+|..... ......-+++..... ....+.|++++.||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~--~p~tFMSNMlYAcSi--lyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRST--SPTTFMSNMLYACSI--LYKTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCC--CchhHHHHHHHHHHH--HHhccCCeEEEEecc
Confidence 4688999999653 123333333333 4555666654221 111111111111100 012568999999999
Q ss_pred CCCcccc-------------------------cCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHHHHHHHHhccchhHH
Q psy8700 127 DETENRE-------------------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180 (200)
Q Consensus 127 Dl~~~~~-------------------------~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~ 180 (200)
|+.+..- ........+.. ..++..+.||+.+|.|.+++|..+.+.+.+......
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 9965410 00001111111 234678899999999999999999888876665554
Q ss_pred Hh
Q psy8700 181 LE 182 (200)
Q Consensus 181 ~~ 182 (200)
.+
T Consensus 272 p~ 273 (366)
T KOG1532|consen 272 PE 273 (366)
T ss_pred hH
Confidence 43
No 284
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=1.9e-12 Score=99.99 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=113.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--CC-----CCcCCC----------cc-cceeEEEE-eCCcEEEEEEEeCCCCCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT--FR-----ESYIPT----------IE-DTYRQVIS-CNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~--~~-----~~~~~~----------~~-~~~~~~~~-~~~~~~~~~~~D~~G~~~ 67 (200)
.-+..++..-.-|||||..|++... .. ++...+ +- ...+-.+. -+++.+.+.++||||+-.
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3455677778899999999997522 11 111111 11 11122222 256889999999999998
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG 147 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 147 (200)
+..-....+..|.+.++|+|++.+-.-+.+...+..+. .+.-++-|+||+||+.... +.-..+.....|
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---------~~LeIiPViNKIDLP~Adp--ervk~eIe~~iG 157 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---------NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIG 157 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---------cCcEEEEeeecccCCCCCH--HHHHHHHHHHhC
Confidence 88777778889999999999998876666666665555 3357888999999987553 233344555566
Q ss_pred C---cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 148 C---HFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 148 ~---~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+ ..+.+||++|.||.++++.|++.+....
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 5 5788999999999999999999886544
No 285
>KOG0082|consensus
Probab=99.44 E-value=4.7e-13 Score=101.18 Aligned_cols=140 Identities=20% Similarity=0.196 Sum_probs=92.9
Q ss_pred CCcCCCcccceeE--------EEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHH
Q psy8700 34 ESYIPTIEDTYRQ--------VISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLE 95 (200)
Q Consensus 34 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~ 95 (200)
+.|.|+..+.... .+.+.-....+.+.|+|||-..+..|.+++.++++++||+++++ .+.+.
T Consensus 166 ~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~ 245 (354)
T KOG0082|consen 166 PDYVPTEQDILRSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMH 245 (354)
T ss_pred CCCCCCHHHHHhhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHH
Confidence 4677776544322 22223334588999999999999999999999999999999875 22344
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc--------------c-cCHHHHHHHHH-----H-----hCCcE
Q psy8700 96 ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR--------------E-VSAAEGEAEAK-----M-----WGCHF 150 (200)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~-~~~~~~~~~~~-----~-----~~~~~ 150 (200)
....+++.+..... ..+.++++++||.|+-..+ . ....++..+.. . ..+.+
T Consensus 246 eS~~LF~sI~n~~~----F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~ 321 (354)
T KOG0082|consen 246 ESLKLFESICNNKW----FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYV 321 (354)
T ss_pred HHHHHHHHHhcCcc----cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceE
Confidence 44445555555443 4678999999999984321 0 11222222221 1 12335
Q ss_pred EEecccCCCcHHHHHHHHHHHHhccch
Q psy8700 151 METSAKTNHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~~~~~ 177 (200)
..+.|.+-.+|+.+|..+.+.+..++.
T Consensus 322 h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 322 HFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999998866543
No 286
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=6e-13 Score=97.81 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700 65 SHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA 143 (200)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 143 (200)
.++++.+.+.+++++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+||.+..+........+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--------~~i~~vIV~NK~DL~~~~~~~~~~~~~~- 93 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--------QNIEPIIVLNKIDLLDDEDMEKEQLDIY- 93 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEECcccCCCHHHHHHHHHHH-
Confidence 3677888888999999999999999888 89999888865543 3489999999999976444332333333
Q ss_pred HHhCCcEEEecccCCCcHHHHHHHHHH
Q psy8700 144 KMWGCHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 144 ~~~~~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
...+++++++||++|.|++++|+.+..
T Consensus 94 ~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 RNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 347889999999999999999998764
No 287
>PRK00007 elongation factor G; Reviewed
Probab=99.43 E-value=2.1e-12 Score=107.94 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=77.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCCC-cCCC------------ccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES-YIPT------------IEDTYR--QVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~-~~~~------------~~~~~~--~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.+..+|+++|.+++|||||+++|+... .... .... ....+. ....+.-....+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 345799999999999999999997421 1000 0000 001111 1111222345899999999887
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
+.......+..+|++++|+|+...-..+. ...+..+.. ...|+++++||+|+.+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~--------~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK--------YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH--------cCCCEEEEEECCCCCCCC
Confidence 76667777888999999999887644443 334444443 337899999999987543
No 288
>KOG1707|consensus
Probab=99.41 E-value=1e-11 Score=98.10 Aligned_cols=163 Identities=18% Similarity=0.265 Sum_probs=121.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
..+-++..++|+.++|||.++++++++.+...+..+....+ ...+...++..-+.+.|.+-. ....+.... ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 44568899999999999999999999998776656555444 345555666667777777754 333333333 689999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNV 161 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i 161 (200)
+++||.+++.++.......+..... ...|+++|++|+|+.+..+.......++++..++ +.+.+|.+....
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~-------~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL-------YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc-------cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 9999999999998877766554443 4589999999999977655444445888889998 677788774333
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
.++|..|..+..-.+
T Consensus 572 ~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 NELFIKLATMAQYPH 586 (625)
T ss_pred chHHHHHHHhhhCCC
Confidence 899999988775544
No 289
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.40 E-value=6.4e-12 Score=90.36 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=82.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC-C------Cc-CCCcc-ccee----EEEEe-CC------------------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-E------SY-IPTIE-DTYR----QVISC-NK------------------ 52 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~------~~-~~~~~-~~~~----~~~~~-~~------------------ 52 (200)
.....|+++|++|||||||+++++..... . .. ....+ ...+ ..+.. ++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 45678999999999999999998753100 0 00 00000 0000 00111 00
Q ss_pred -cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 53 -NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 53 -~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
....+.++||.|.-... . .+....+..+.|+|..+.+.... .. ... ...|.++++||+|+.+.
T Consensus 100 ~~~~d~IiIEt~G~l~~~-~--~~~~~~~~~i~Vvd~~~~d~~~~--~~---~~~--------~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP-A--DFDLGEHMRVVLLSVTEGDDKPL--KY---PGM--------FKEADLIVINKADLAEA 163 (207)
T ss_pred cCCCCEEEEecCCCcCCC-c--ccccccCeEEEEEecCcccchhh--hh---HhH--------HhhCCEEEEEHHHcccc
Confidence 12366777777721100 0 11112344556777765432111 00 111 12577999999999754
Q ss_pred cccCHHHHHHHHHH--hCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 132 REVSAAEGEAEAKM--WGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 132 ~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
............+. ...+++++||+++.|+.++++++.+.
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 164 VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 32222222222223 23699999999999999999999874
No 290
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.40 E-value=4.1e-12 Score=96.25 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=64.0
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
.+.+.|+||+|.-... ...+..+|.++++...... ..+......+ .+.|.++++||+|+.....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l----------~~~~~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL----------MEIADIYVVNKADGEGATN 189 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH----------hhhccEEEEEcccccchhH
Confidence 4688999999944211 2345567888877544333 3333322222 2267799999999875432
Q ss_pred cCHHHH------HHH-HH--HhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 134 VSAAEG------EAE-AK--MWGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 134 ~~~~~~------~~~-~~--~~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
...... ... .. .+..+++.+||+++.|++++++++.+...
T Consensus 190 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 190 VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111000 000 11 12346999999999999999999998754
No 291
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.38 E-value=1.9e-11 Score=104.61 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=89.6
Q ss_pred CCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCC----------------cEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 18 VGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNK----------------NICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 18 ~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
++||||+.++.+..........+.... ...+..+. ....+.||||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 359999999988665433222222221 11222211 1113899999999999888888888899
Q ss_pred EEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------------HHH-HHH---
Q psy8700 81 AFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------------AAE-GEA--- 141 (200)
Q Consensus 81 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~~-~~~--- 141 (200)
++++|+|+++. .++..+. .+.. .+.|+++++||+|+....... ... ..+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~--------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ--------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH--------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 99999999873 3333322 2222 237999999999985321100 000 000
Q ss_pred --------HH------------HHh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 142 --------EA------------KMW--GCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 142 --------~~------------~~~--~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
+. ..+ ..++++|||++|.|++++++.+....
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 00 011 24899999999999999998876543
No 292
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3e-12 Score=94.51 Aligned_cols=167 Identities=15% Similarity=0.126 Sum_probs=107.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC-------------------------CCCCcCCCcccceeEEEEe---CCcEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT-------------------------FRESYIPTIEDTYRQVISC---NKNICT 56 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~ 56 (200)
+.+++|.++|...-|||||+.+|++-- +.+.+.|....+....-.. ..-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 578999999999999999999997511 1111211110000000000 122357
Q ss_pred EEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH
Q psy8700 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA 136 (200)
Q Consensus 57 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 136 (200)
+.|+|.||++-.......-..=.|+.++|+.++++..--+...-+..+.-.. -..++|+-||+|+....+..+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-------ik~iiIvQNKIDlV~~E~AlE 160 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-------IKNIIIVQNKIDLVSRERALE 160 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-------cceEEEEecccceecHHHHHH
Confidence 8999999977655544444444699999999997654444444444444332 267899999999986543221
Q ss_pred --HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhccchh
Q psy8700 137 --AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178 (200)
Q Consensus 137 --~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~ 178 (200)
.+.+.|.+. -+.|++++||..+.||+-+++.|.+.+.....+
T Consensus 161 ~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 161 NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 223333332 356999999999999999999999998755443
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=1.4e-11 Score=94.48 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=81.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCC--cccceeEEEEeCCcEEEEEEEeCCCCCCChh-----hHhhcc
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPT--IEDTYRQVISCNKNICTLQITDTTGSHQFPA-----MQRLSI 76 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~~ 76 (200)
+..++|+|+|.+|+|||||||+|.+-.-. +..-++ ...+...........-.+.+||.||...... +...-+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 35789999999999999999999763221 111111 1111122111112223699999999543332 223345
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCC--Cc-----ccccCHH----HHHHHH-
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDE--TE-----NREVSAA----EGEAEA- 143 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~-----~~~~~~~----~~~~~~- 143 (200)
...|.+|++.+-. +....-++ ..+.. .+.|+.+|-||+|. .+ +...... .....+
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~--------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQR--------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHH--------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHH--------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence 5679877766522 33333333 33333 23799999999995 11 1111111 111111
Q ss_pred ---HHhC---CcEEEecccCCC--cHHHHHHHHHHHHhccchhHHH
Q psy8700 144 ---KMWG---CHFMETSAKTNH--NVKELFAELLNLEKNRNISLQL 181 (200)
Q Consensus 144 ---~~~~---~~~~~vSa~~~~--~i~~~~~~i~~~~~~~~~~~~~ 181 (200)
+..| .++|.+|+.+-. ++..+.+.+.+-+..+..+..+
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fl 226 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFL 226 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHH
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHH
Confidence 1123 379999987654 5888999999888766655543
No 294
>KOG0461|consensus
Probab=99.36 E-value=2.4e-11 Score=90.70 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=102.9
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCC----CCCCcCCCccccee------EEE-----EeCCcEEEEEEEeCCCC
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGT----FRESYIPTIEDTYR------QVI-----SCNKNICTLQITDTTGS 65 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~D~~G~ 65 (200)
|..++..+++.++|...||||||.++|..-. ++.+..++.-+.+- ..+ ...++..++.++|+||+
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 5566777999999999999999999997533 22222222211111 111 12456678999999996
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HH--HHHHH
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AA--EGEAE 142 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~--~~~~~ 142 (200)
...-+....-.+-.|..++|+|+..+..-+..+-+. +-+.. -...+||+||+|.....+.. .. .....
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~-------c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL-------CKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh-------ccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 654444444444468999999998664433332222 22222 14578889999976543221 11 11222
Q ss_pred HHH------hC-CcEEEecccCC----CcHHHHHHHHHHHHhccc
Q psy8700 143 AKM------WG-CHFMETSAKTN----HNVKELFAELLNLEKNRN 176 (200)
Q Consensus 143 ~~~------~~-~~~~~vSa~~~----~~i~~~~~~i~~~~~~~~ 176 (200)
.+. .| .|++++||+.| .+|.++.+.+.+.+.+..
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 111 22 69999999999 678888888887775433
No 295
>KOG3886|consensus
Probab=99.34 E-value=4.3e-12 Score=89.55 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=99.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC----CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-----hhhHhhcc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR----ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-----PAMQRLSI 76 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~ 76 (200)
..-||+++|..||||||+=-.+. .++. ....++++.... .+.+- .+.-+.+||.+|++.+ .......+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHs-h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHS-HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIF 79 (295)
T ss_pred ccceEEEeccCCCCccccchhhh-hhhhhhhhhccCCcceeeeh-hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhh
Confidence 35689999999999999533322 2221 112222221111 11111 2346889999998742 23556688
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHH----HHHHhCCcE
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEA----EAKMWGCHF 150 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~----~~~~~~~~~ 150 (200)
.+.+++++|||+...+-..++..+...+..... ..|...+++.++|+|+....... ..+... +....++.+
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~---~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~ 156 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ---NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKC 156 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHh---cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccc
Confidence 899999999999998888887777777766665 35778899999999997543222 222222 222344577
Q ss_pred EEecccCCCcHHHHHHHHHHHH
Q psy8700 151 METSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
+++|..+ ..+-++|..|....
T Consensus 157 f~TsiwD-etl~KAWS~iv~~l 177 (295)
T KOG3886|consen 157 FPTSIWD-ETLYKAWSSIVYNL 177 (295)
T ss_pred cccchhh-HHHHHHHHHHHHhh
Confidence 8777643 34555555555444
No 296
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.34 E-value=4.6e-11 Score=94.72 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=112.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEe--CCcEEEEEEEeCCCCCCChhhHhhcccc---
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC--NKNICTLQITDTTGSHQFPAMQRLSISK--- 78 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 78 (200)
...-.|+|+|..++|||||+.+|.+.. .+.++.+-.|.+ .+.- .+...++.+|...|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999997643 233343322221 1211 1234688999999877777777665653
Q ss_pred -CCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCC--------------------------------------------
Q psy8700 79 -GHAFILVYSCTSRQS-LEELRPIWEVIRETKGGAN-------------------------------------------- 112 (200)
Q Consensus 79 -~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------------------------- 112 (200)
--.+++|+|.+.|.. ++.+..|...+......+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 257889999999885 4456666544333322100
Q ss_pred C-------------CCCCcEEEEeeCCCCCccc-----------ccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700 113 E-------------LASIPIMLVGNKCDETENR-----------EVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168 (200)
Q Consensus 113 ~-------------~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i 168 (200)
+ .-.+|++||.+|+|..... +...+-...++..+|+.++++|++...+++.+...|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0 0135999999999975311 111122455667789999999999999999999998
Q ss_pred HHHHhccc
Q psy8700 169 LNLEKNRN 176 (200)
Q Consensus 169 ~~~~~~~~ 176 (200)
.+.+....
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 88775443
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.33 E-value=7.4e-13 Score=96.72 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=54.2
Q ss_pred EEEEEeCCCCCCChhh------Hhhccc--cCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 56 TLQITDTTGSHQFPAM------QRLSIS--KGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~------~~~~~~--~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
...++|||||.+.... ....+. ..-++++++|..-..+ ...+..++..+.-.. ..+.|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-----~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-----RLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-----HHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-----hCCCCEEEeeecc
Confidence 6899999998764321 122222 3457778888653222 112222222211111 1348999999999
Q ss_pred CCCcccc------------c-------CHHHHHHHHHH---hC-C-cEEEecccCCCcHHHHHHHHHHHH
Q psy8700 127 DETENRE------------V-------SAAEGEAEAKM---WG-C-HFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 127 Dl~~~~~------------~-------~~~~~~~~~~~---~~-~-~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
|+.+... . ........... .+ . .++.+|+.+++++.+++..|-+.+
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9987220 0 00001111111 22 3 699999999999999999887654
No 298
>KOG3905|consensus
Probab=99.33 E-value=7e-11 Score=87.56 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=115.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEe--CCcEEEEEEEeCCCCCCChhhHhhccccC----
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC--NKNICTLQITDTTGSHQFPAMQRLSISKG---- 79 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---- 79 (200)
.-.|+++|+.|+|||||+.+|.+.. .+.+..+-.|.+ .++- .+...++.+|-..|.-....+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 4579999999999999999998854 444444433333 2222 22336888999989766666666555443
Q ss_pred CEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCC--------------------------------------------
Q psy8700 80 HAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANEL-------------------------------------------- 114 (200)
Q Consensus 80 ~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 114 (200)
-.+|++.|+++|. -+..++.|.+.+.+..+...-.
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 4678899999995 5777888877666554431110
Q ss_pred ------------CCCcEEEEeeCCCCCc----c-------cccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 115 ------------ASIPIMLVGNKCDETE----N-------REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 115 ------------~~~p~ivv~nK~Dl~~----~-------~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
..+|++||.+|+|... . -.........|+..+|...+.+|++...||+-+...|.+.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 2349999999999842 1 1122334566777889999999999999999999999886
Q ss_pred Hh
Q psy8700 172 EK 173 (200)
Q Consensus 172 ~~ 173 (200)
.+
T Consensus 289 ~y 290 (473)
T KOG3905|consen 289 SY 290 (473)
T ss_pred hc
Confidence 64
No 299
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=1.8e-10 Score=88.65 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=95.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC----CCC-------------CC-cC---CCcccce----eEEE-EeCCcEEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKG----TFR-------------ES-YI---PTIEDTY----RQVI-SCNKNICTL 57 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~----~~~-------------~~-~~---~~~~~~~----~~~~-~~~~~~~~~ 57 (200)
....+-|+++|+.++|||||+|+|.+. ... .. .. .|++..+ ...+ ..++....+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 467789999999999999999999875 222 00 01 1111111 1122 224555789
Q ss_pred EEEeCCCCCCChh-------h----------------------Hhhccc-cCCEEEEEe-eCC--C---hhHHHHHHHHH
Q psy8700 58 QITDTTGSHQFPA-------M----------------------QRLSIS-KGHAFILVY-SCT--S---RQSLEELRPIW 101 (200)
Q Consensus 58 ~~~D~~G~~~~~~-------~----------------------~~~~~~-~~~~~i~v~-d~~--~---~~~~~~~~~~~ 101 (200)
.++||+|.+.... . ....+. .++..++|. |.+ + ......-..+.
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 9999999432111 1 333444 678777777 553 1 11223334444
Q ss_pred HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC--CcHHHHHHHHHHHHh
Q psy8700 102 EVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN--HNVKELFAELLNLEK 173 (200)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~--~~i~~~~~~i~~~~~ 173 (200)
..+.... +|+++++|+.|-.... .......+...++.+++.+|+.+- ..|..+|+.++-.+.
T Consensus 174 ~eLk~~~--------kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 174 EELKELN--------KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred HHHHhcC--------CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 5555443 8999999999943322 334445556677888888876543 456666666655443
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.32 E-value=3.6e-11 Score=101.19 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=78.6
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCc------CCCcc-----cc-e-----eEEEEeCCcEEEEEEEeCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESY------IPTIE-----DT-Y-----RQVISCNKNICTLQITDTT 63 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~------~~~~~-----~~-~-----~~~~~~~~~~~~~~~~D~~ 63 (200)
+.++.-+|+++|..++|||||+.+|+... ..... ..... +. . ......++....+.|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 34455679999999999999999997532 11100 00000 00 0 0011224456789999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
|+..+.......+..+|++++|+|+......+. ...|...... ..|.++++||+|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~--------~~~~iv~iNK~D~~ 152 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE--------RVKPVLFINKVDRL 152 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc--------CCCeEEEEECchhh
Confidence 999988888888999999999999887643333 3344333322 25789999999975
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.30 E-value=1.3e-11 Score=105.06 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCCc------CCCcc------ccee---EEEE--------------eC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESY------IPTIE------DTYR---QVIS--------------CN 51 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~------~~~~~------~~~~---~~~~--------------~~ 51 (200)
...+.-+|+++|..++|||||+.+|+...- .... ..... -+.. .... .+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 455677999999999999999999985331 0000 00000 0000 0111 12
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
+..+.+.++||||+.++.......++.+|++++|+|+.++-.... ...|..+.. .+.|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~--------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG--------ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH--------CCCCEEEEEECCccc
Confidence 235788999999999998888888899999999999987755444 344444443 347999999999986
No 302
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=1.8e-10 Score=88.33 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=53.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCC---
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQF--- 68 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~--- 68 (200)
++|+++|.||||||||+|+|++.... .+|..++-......+.+.+. ...++++|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999986632 22222222222223333221 136899999995431
Q ss_pred -hhhHhh---ccccCCEEEEEeeCC
Q psy8700 69 -PAMQRL---SISKGHAFILVYSCT 89 (200)
Q Consensus 69 -~~~~~~---~~~~~~~~i~v~d~~ 89 (200)
..+... .++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122222 456799999999984
No 303
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=1.5e-11 Score=85.47 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=44.0
Q ss_pred EEEEEeCCCCC----CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 56 TLQITDTTGSH----QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 56 ~~~~~D~~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
.+.|+||||.. ....+...++..+|++++|.+.+...+-.....+...... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~--------~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP--------DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT--------TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC--------CCCeEEEEEcCC
Confidence 56799999953 2346778888999999999999986655554444433333 224589999985
No 304
>PTZ00416 elongation factor 2; Provisional
Probab=99.30 E-value=1.3e-11 Score=104.85 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCcC-CCc-----c-----c-cee---EEEEeC--------CcEEEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYI-PTI-----E-----D-TYR---QVISCN--------KNICTL 57 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~-~~~-----~-----~-~~~---~~~~~~--------~~~~~~ 57 (200)
..++.-+|+++|..++|||||+++|+... ...... .+. . . +.. ...... +....+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 34556799999999999999999998632 110000 000 0 0 000 011111 225679
Q ss_pred EEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 58 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.++||||+.++.......+..+|++++|+|+.++-..+. ...|..+.. .+.|+++++||+|+.
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~--------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ--------ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH--------cCCCEEEEEEChhhh
Confidence 999999999888888888899999999999988654443 344544443 337999999999986
No 305
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.29 E-value=6.5e-11 Score=88.58 Aligned_cols=149 Identities=24% Similarity=0.208 Sum_probs=102.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-------------C----------------------CcCCCcccceeEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-------------E----------------------SYIPTIEDTYRQVI 48 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-------------~----------------------~~~~~~~~~~~~~~ 48 (200)
+...++.+-.|...=||||||-||+.+.-. . ...-|++..|+
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR--- 79 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR--- 79 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee---
Confidence 456789999999999999999999754310 0 00001111111
Q ss_pred EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 49 SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
.+...+.++.+-||||++.|.+....-...||+.|+++|+... +.........+....+ -.++++.+||+||
T Consensus 80 yFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG------IrhvvvAVNKmDL 151 (431)
T COG2895 80 YFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG------IRHVVVAVNKMDL 151 (431)
T ss_pred ecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC------CcEEEEEEeeecc
Confidence 2344567899999999999988888888899999999998543 3343444455555553 3678999999999
Q ss_pred CcccccCH----HHHHHHHHHhCC---cEEEecccCCCcHHH
Q psy8700 129 TENREVSA----AEGEAEAKMWGC---HFMETSAKTNHNVKE 163 (200)
Q Consensus 129 ~~~~~~~~----~~~~~~~~~~~~---~~~~vSa~~~~~i~~ 163 (200)
.+..+... .+-..++...+. .++++||+.|+|+-.
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 87654322 223344555554 699999999998643
No 306
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.27 E-value=1.1e-10 Score=76.90 Aligned_cols=114 Identities=27% Similarity=0.308 Sum_probs=78.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcC-CCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-PTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999997766643322 2222 3334455677889999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
+.++..++... |...+.... ..+.|.++++||.|+.+..+.... .+..++++|++++.|+.
T Consensus 55 ~~~~~~s~~~~--~~~~i~~~~-----k~dl~~~~~~nk~dl~~~~~~~~~--------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 55 RVDDRDSADNK--NVPEVLVGN-----KSDLPILVGGNRDVLEEERQVATE--------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred EccCHHHHHHH--hHHHHHhcC-----CCCCcEEEEeechhhHhhCcCCHH--------HHHHHHHHhCCCcchhh
Confidence 99999888665 444443322 245789999999998443332221 22346678899999884
No 307
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.27 E-value=1.1e-10 Score=90.32 Aligned_cols=162 Identities=18% Similarity=0.182 Sum_probs=109.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--CCCC------cCCCc------c-cceeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT--FRES------YIPTI------E-DTYRQVISCNKNICTLQITDTTGSHQFPAM 71 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~------~~~~~------~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 71 (200)
.-+|+++....-|||||+..|+... +.++ ...+. + ....+...++-+.+.+.++||||+..+..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4579999999999999999998532 2221 11111 1 111222223334468999999999999999
Q ss_pred HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH-HHHHHH-------
Q psy8700 72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA-EGEAEA------- 143 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~------- 143 (200)
....+.-.|++++++|+.+...- +.+..+..... ...+.|||+||+|.++.+..... +...+.
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~--------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALA--------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHH--------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999986433 33443333333 33677999999998876532221 122222
Q ss_pred HHhCCcEEEecccCCC----------cHHHHHHHHHHHHhccch
Q psy8700 144 KMWGCHFMETSAKTNH----------NVKELFAELLNLEKNRNI 177 (200)
Q Consensus 144 ~~~~~~~~~vSa~~~~----------~i~~~~~~i~~~~~~~~~ 177 (200)
..+.+|+++.|+..|. ++..+|+.|++.+.....
T Consensus 156 eQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 156 EQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred hhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 2345789999988873 689999999998865543
No 308
>KOG1486|consensus
Probab=99.25 E-value=7.2e-10 Score=79.56 Aligned_cols=159 Identities=21% Similarity=0.191 Sum_probs=98.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhc
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLS 75 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~ 75 (200)
++...+++++|.|++|||||+..+....... .|--++-.........++. .+++.|.||+-+- .++....
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEE
Confidence 4667899999999999999999987644211 1111111111223334444 8999999995431 3444556
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCC-CCC--------------------------------------
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE-LAS-------------------------------------- 116 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------------------------------- 116 (200)
.+.+|.++.|.|++..+.-+.+. -..+......++. .|+
T Consensus 137 ArtaDlilMvLDatk~e~qr~~l--e~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~N 214 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREIL--EKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHN 214 (364)
T ss_pred eecccEEEEEecCCcchhHHHHH--HHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeecc
Confidence 67799999999998765433211 1122222211111 111
Q ss_pred ------------------------CcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 117 ------------------------IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 117 ------------------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.+++.|-||+|..+ ..+...+++.++- +-+|+..+-|++.+++.|++.+
T Consensus 215 aevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs-----~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 215 AEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS-----IEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ceEEEecCCChHHHHHHHhccceEEEEEEEeeccceec-----HHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHh
Confidence 17788888888543 3344445555544 5578888899999999999977
Q ss_pred h
Q psy8700 173 K 173 (200)
Q Consensus 173 ~ 173 (200)
.
T Consensus 288 ~ 288 (364)
T KOG1486|consen 288 N 288 (364)
T ss_pred c
Confidence 4
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=8.6e-12 Score=86.18 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=53.8
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEecccC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMETSAKT 157 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~ 157 (200)
+.-|+|+|++.++..-. .... ... ..=++|+||.|+......+.....+..+. .+.+++++|+++
T Consensus 119 ~~~v~VidvteGe~~P~----------K~gP--~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~kt 185 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR----------KGGP--GIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKT 185 (202)
T ss_pred ceEEEEEECCCCCCCcc----------cCCC--cee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 47788889887643111 1000 001 12389999999988776654444444444 456999999999
Q ss_pred CCcHHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNLE 172 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~ 172 (200)
|+|++++++++....
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999987653
No 310
>KOG0705|consensus
Probab=99.22 E-value=4.4e-11 Score=93.97 Aligned_cols=164 Identities=20% Similarity=0.353 Sum_probs=126.0
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
+..-+++|+.++|..++|||+|+.+++.+.|.....| .++.+++.+..++....+.+.|-+|.. ...|..++|+
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvda 98 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDA 98 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccc
Confidence 4566789999999999999999999999998665444 445667777778888889999988832 2457779999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc--c-ccCHHHHHHHHHHhCCcEEEecccCC
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN--R-EVSAAEGEAEAKMWGCHFMETSAKTN 158 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~~~vSa~~~ 158 (200)
+||||.+.+..+++.+..+...+..... ...+|+++++++.-.... + ..+.......++...+.||++++..|
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~----r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRN----ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccc----cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 9999999999999998888877665553 456788888886433211 2 22333345556667789999999999
Q ss_pred CcHHHHHHHHHHHHhcc
Q psy8700 159 HNVKELFAELLNLEKNR 175 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~~~ 175 (200)
-++..+|+.+...+...
T Consensus 175 lnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 175 LNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999998876544
No 311
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.21 E-value=3.1e-10 Score=92.06 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hh---Hh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AM---QR 73 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---~~ 73 (200)
-.++|+++|.+|+||||++|++++...... ..+.+..........++ ..+.++||||..... .+ ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 457999999999999999999998653221 11222222122222333 479999999965421 11 11
Q ss_pred hccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 74 LSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 74 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
.++. ..|++++|..++.......-..++..+....+. .--..+|||+|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~---~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP---SIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH---HhHcCEEEEEeCCccCC
Confidence 2333 478999998775332221223455556555541 12247899999999875
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.19 E-value=4.8e-10 Score=81.72 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=43.5
Q ss_pred EEEEEEeCCCCCCC-------------hhhHhhcccc-CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE
Q psy8700 55 CTLQITDTTGSHQF-------------PAMQRLSISK-GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120 (200)
Q Consensus 55 ~~~~~~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 120 (200)
..+.++||||.... ..+...|+++ .+.+++|+|+...-.-.....+...+. ....|++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld--------~~~~rti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD--------PQGERTI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH--------HcCCcEE
Confidence 47889999996421 2355567774 468888998765322222222222222 2447999
Q ss_pred EEeeCCCCCccc
Q psy8700 121 LVGNKCDETENR 132 (200)
Q Consensus 121 vv~nK~Dl~~~~ 132 (200)
+|+||.|..+..
T Consensus 197 ~ViTK~D~~~~~ 208 (240)
T smart00053 197 GVITKLDLMDEG 208 (240)
T ss_pred EEEECCCCCCcc
Confidence 999999987643
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.5e-09 Score=81.26 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=54.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEe------------C----CcEEEEEEEeCCCC---
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISC------------N----KNICTLQITDTTGS--- 65 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~D~~G~--- 65 (200)
+.++++++|-||+|||||+|+++..... .+|+-++-+.-...+.+ . .....++|+|.+|.
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3589999999999999999999876643 23332221111111111 1 12357899999993
Q ss_pred -CCChhhHhhcc---ccCCEEEEEeeCC
Q psy8700 66 -HQFPAMQRLSI---SKGHAFILVYSCT 89 (200)
Q Consensus 66 -~~~~~~~~~~~---~~~~~~i~v~d~~ 89 (200)
+.-..+...|+ +.+|+++.|+++.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 33344555544 4689999999986
No 314
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.13 E-value=8.1e-10 Score=86.83 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=78.4
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
....+.++|++|+...+..|..++.++++++||+++++ ...+.+.-.++..+..... ..+.|++|+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~----~~~~~iil~ 309 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW----FKNTPIILF 309 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG----GTTSEEEEE
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc----cccCceEEe
Confidence 34578999999999889999999999999999999863 1334554555555555442 467899999
Q ss_pred eeCCCCCccc----------------c--cCHHHHHHHHHH------------hCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 123 GNKCDETENR----------------E--VSAAEGEAEAKM------------WGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 123 ~nK~Dl~~~~----------------~--~~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
+||.|+...+ . ........+... ..+.++.++|.+..++..+|+.+.+.+
T Consensus 310 lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 310 LNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp EE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9999973210 0 122223333221 111355788988899999999887753
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.13 E-value=2.8e-11 Score=89.85 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=39.3
Q ss_pred CcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 117 IPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 117 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
.+-++|+||+|+...............+. ...+++.+|+++|.|++++++||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45699999999975332222222232332 35699999999999999999999773
No 316
>KOG0085|consensus
Probab=99.11 E-value=6.9e-11 Score=83.76 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=90.7
Q ss_pred CCcCCCcccceeEEE--------EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHH
Q psy8700 34 ESYIPTIEDTYRQVI--------SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLE 95 (200)
Q Consensus 34 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~ 95 (200)
+.|.|+..+..+..+ .++-+.+.+.+.|.+|+...+..|.+++.+.-.++|++.++ +.+.++
T Consensus 170 ~~ylPTqQDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMe 249 (359)
T KOG0085|consen 170 PGYLPTQQDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRME 249 (359)
T ss_pred cccCcchhhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH
Confidence 356666554444333 23334567889999999999999999999987777766553 344566
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----------------ccCHHHHHHHHHH----hCC------c
Q psy8700 96 ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR----------------EVSAAEGEAEAKM----WGC------H 149 (200)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~~----~~~------~ 149 (200)
....++..+..... ..+.++++.+||.|+.+.+ ..+.+.+.++... .+. .
T Consensus 250 ESkALFrTIi~yPW----F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~ 325 (359)
T KOG0085|consen 250 ESKALFRTIITYPW----FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIY 325 (359)
T ss_pred HHHHHHHHHhcccc----ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceee
Confidence 66666666666554 4668999999999986542 1122222222211 111 1
Q ss_pred EEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 150 FMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 150 ~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
-..+.|.+.+||+-+|..+.+.+.+.+
T Consensus 326 SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 326 SHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred eeeeecccchhHHHHHHHHHHHHHHhh
Confidence 234778888999999999988876554
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.11 E-value=8.8e-10 Score=82.50 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=72.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCc---C-------CCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh------
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESY---I-------PTIE-DTYRQVISCNKNICTLQITDTTGSHQFP------ 69 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~---~-------~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~------ 69 (200)
.++|+|+|..|+|||||+|.|++....... . ++.. ........-++..+.+.++||||.....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999986542221 0 0111 1111233345677899999999943210
Q ss_pred -h-------hHhhcc-------------ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 70 -A-------MQRLSI-------------SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 70 -~-------~~~~~~-------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
. ....++ .+.|+++|+++.+.. .+..+.- ..|.... ...++|=|+.|+|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di--~~mk~Ls------~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDI--EFMKRLS------KRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHH--HHHHHHT------TTSEEEEEESTGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHH--HHHHHhc------ccccEEeEEecccc
Confidence 0 000011 135899999987653 2222222 2244444 45789999999998
Q ss_pred CcccccCHH--HHHHHHHHhCCcEEEe
Q psy8700 129 TENREVSAA--EGEAEAKMWGCHFMET 153 (200)
Q Consensus 129 ~~~~~~~~~--~~~~~~~~~~~~~~~v 153 (200)
....+.... .........++.+|..
T Consensus 155 lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred cCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 765543322 2222334556655543
No 318
>KOG0410|consensus
Probab=99.11 E-value=1.3e-10 Score=86.10 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC--hhhH------hh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF--PAMQ------RL 74 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~------~~ 74 (200)
....-|+++|..|||||||+++|...... +....|.+.+........+. .+.+.||-|.-.. ..+. ..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 44567999999999999999999964432 23333443332222222333 6889999994321 2222 22
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE----EEEeeCCCCCcccccCHHHHHHHHHHhCCcE
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI----MLVGNKCDETENREVSAAEGEAEAKMWGCHF 150 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (200)
....+|.++.|.|++.|+.-.+....+..+.... .+..|- +=|=||+|....... ....+ .
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig-----v~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~ 318 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG-----VPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--D 318 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC-----CCcHHHHhHHHhhccccccccccCc--------cccCC--c
Confidence 3447899999999999998888777777776655 233333 344577775332110 00111 5
Q ss_pred EEecccCCCcHHHHHHHHHHHHhc
Q psy8700 151 METSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+.+||++|+|++++.+.+......
T Consensus 319 v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccccCccHHHHHHHHHHHhhh
Confidence 789999999999999988776643
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.8e-09 Score=82.22 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=101.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
-|+-.|.---|||||+..+.+.......-...-+.+. .....+-....+.|+|.||++++-+....-+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 3677888889999999999875532110000001111 11112222338999999999988887777888899999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH--HHHhCCcEEEecccCCCcHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE--AKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
+.++.-..+..+. +. +.+.. .....+||+||+|..+............ ......++|.+|++.|.||.++
T Consensus 82 ~~deGl~~qtgEh-L~-iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 82 AADEGLMAQTGEH-LL-ILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred eCccCcchhhHHH-HH-HHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence 9976543333222 22 33333 2245599999999877543222211111 1233458999999999999999
Q ss_pred HHHHHHHHh
Q psy8700 165 FAELLNLEK 173 (200)
Q Consensus 165 ~~~i~~~~~ 173 (200)
-+.|.++..
T Consensus 154 k~~l~~L~~ 162 (447)
T COG3276 154 KNELIDLLE 162 (447)
T ss_pred HHHHHHhhh
Confidence 999999883
No 320
>KOG0458|consensus
Probab=99.06 E-value=8e-10 Score=87.60 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=95.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhC--------------------CCCCCc----CCC-----cccce-eEEEEeCCcEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKG--------------------TFRESY----IPT-----IEDTY-RQVISCNKNIC 55 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~--------------------~~~~~~----~~~-----~~~~~-~~~~~~~~~~~ 55 (200)
..+..+++|...+|||||+-+|+.. +.+-.| ..+ .+.+. ....+++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4588999999999999999998641 100000 000 11111 12335566667
Q ss_pred EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH---HH---HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS---LE---ELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.+++.|.||+..+..-...-...+|+.++|+|++-.+- |. +.+.. ..+.+.. .-...+|++||+|+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~L------gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSL------GISQLIVAINKMDLV 328 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHc------CcceEEEEeeccccc
Confidence 99999999988888777777788999999999975432 11 11221 2233322 335789999999997
Q ss_pred cccccCH-----HHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy8700 130 ENREVSA-----AEGEAEAKMWG-----CHFMETSAKTNHNVKEL 164 (200)
Q Consensus 130 ~~~~~~~-----~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~ 164 (200)
+=.+... .....+.+..| +.|+++|+..|.|+...
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 5322111 12222223334 36999999999997665
No 321
>KOG0468|consensus
Probab=99.05 E-value=1.9e-09 Score=86.84 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=84.1
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC---------cCCCcccce-e----E----EE---EeCCcEEEEEEE
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES---------YIPTIEDTY-R----Q----VI---SCNKNICTLQIT 60 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~-~----~----~~---~~~~~~~~~~~~ 60 (200)
+-+.....++++|.-++|||+|+.-|....-+.- |..+..... + + +. ..++..+.+.+.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3456678899999999999999999876432111 111111000 0 0 11 124566889999
Q ss_pred eCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
||||+-.+..-....++-+|++++++|+.+.-.+..-+.+...+. .+.|+++|+||+|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---------~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---------NRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---------ccCcEEEEEehhHH
Confidence 999999999999999999999999999998877666443333332 45799999999996
No 322
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.04 E-value=8.6e-10 Score=75.79 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=65.8
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG 147 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 147 (200)
|+.+..+.++++|++++|+|+.++..... ..+...+. ....|+++|+||+|+.+.... .....+....+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~--------~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~ 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL--------ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEG 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH--------hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCC
Confidence 46677888889999999999987643322 11111111 134799999999998643221 11112223356
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.+++.+||+++.|++++++.+.+.+..
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 789999999999999999999987753
No 323
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=5.3e-09 Score=77.79 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=51.0
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCC----h
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQF----P 69 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~----~ 69 (200)
|+++|.|+||||||+|+|++..... +|..++-......+.+.+. ...++++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999866522 2222221222223333322 236999999995431 2
Q ss_pred hhHhh---ccccCCEEEEEeeCC
Q psy8700 70 AMQRL---SISKGHAFILVYSCT 89 (200)
Q Consensus 70 ~~~~~---~~~~~~~~i~v~d~~ 89 (200)
.+... .++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 33333 345799999999873
No 324
>KOG1487|consensus
Probab=98.98 E-value=6.6e-09 Score=75.00 Aligned_cols=154 Identities=19% Similarity=0.128 Sum_probs=96.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEE--eCCcEEEEEEEeCCCCCC-------ChhhHhhccc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--CNKNICTLQITDTTGSHQ-------FPAMQRLSIS 77 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~ 77 (200)
..++.++|.|++||||++..|.+... ..+...+++..++. ..-+..++++.|.||.-+ ...+.....+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence 45899999999999999999988442 22333333333221 112334899999999542 2344555667
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCC--------------------------------------------
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE-------------------------------------------- 113 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 113 (200)
.++.+++|.|+.-|-+-..+.. .+++....+++.
T Consensus 136 tcnli~~vld~~kp~~hk~~ie--~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr 213 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKKIIE--KELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALR 213 (358)
T ss_pred cccEEEEEeeccCcccHHHHHH--HhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeee
Confidence 7899999999876544333222 111111110000
Q ss_pred -------------CC--CCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 114 -------------LA--SIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 114 -------------~~--~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.+ -.|.+.++||+|.+.-.+.+-. ......+.+||..+.|++++++.+++.+
T Consensus 214 ~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii-------~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 214 FDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDII-------YTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred cCcchhhhhhhhccCceeeeeeeeecccceeeeecccee-------eeccceeecccccccchHHHHHHHhhcc
Confidence 01 2388888899987653332211 1223678899999999999999999876
No 325
>KOG1144|consensus
Probab=98.98 E-value=5.6e-09 Score=85.06 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=99.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-EEe------------C----CcEEEEEEEeCCCCCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISC------------N----KNICTLQITDTTGSHQF 68 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~------------~----~~~~~~~~~D~~G~~~~ 68 (200)
...-++++|....|||-|+..+-+.+.....-.++....-.+ +.. + -..--+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 346689999999999999999977554322222211111000 000 0 11125678999999999
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-----c-cccC-------
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-----N-REVS------- 135 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~-~~~~------- 135 (200)
..++.....-||.+|+|+|+..+-.-+.+..+ +.+. ..+.|+||.+||+|-.= + ..+.
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR--------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLR--------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH-HHHH--------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 99999999999999999998753222222221 1122 24589999999999521 0 0000
Q ss_pred ---HHHH--------HHH-HHHhC-------------CcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 136 ---AAEG--------EAE-AKMWG-------------CHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 136 ---~~~~--------~~~-~~~~~-------------~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
..+. .+| .+.++ +.++++||..|+||.+++.+|+++...+
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 0000 000 01111 1367899999999999999999876543
No 326
>KOG3887|consensus
Probab=98.98 E-value=1.5e-08 Score=72.52 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=100.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE-EeCCcEEEEEEEeCCCCCCCh---hhHhhccccC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI-SCNKNICTLQITDTTGSHQFP---AMQRLSISKG 79 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~~ 79 (200)
.....+|+++|-..||||| |.+..-.+.+++..--.+.+.+.+- .+.+.-+.+++||.||+..+- --....++.+
T Consensus 24 ~~~kp~ilLMG~rRsGKsS-I~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 24 SGMKPRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred CCCCceEEEEeecccCcch-hhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 3345789999999999999 4444444443332211111111111 122344689999999987542 2334577889
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HH----HHHHHHhC-----C
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EG----EAEAKMWG-----C 148 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~----~~~~~~~~-----~ 148 (200)
.++++|+|+.+. -++.+..+...+.+..+ --+++.+-|.+.|.|.....-..+. .. .......| .
T Consensus 103 gALifvIDaQdd-y~eala~L~~~v~rayk---vNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~v 178 (347)
T KOG3887|consen 103 GALIFVIDAQDD-YMEALARLHMTVERAYK---VNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQV 178 (347)
T ss_pred CeEEEEEechHH-HHHHHHHHHHHhhheee---cCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceE
Confidence 999999998764 34444444444444333 3477888999999998653211111 11 11111222 2
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhccchh
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKNRNIS 178 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~ 178 (200)
.|+.+|.. ...|.|+|..+.+.+..+-..
T Consensus 179 sf~LTSIy-DHSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 179 SFYLTSIY-DHSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred EEEEeeec-chHHHHHHHHHHHHHhhhchh
Confidence 46667664 456999999999877655443
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=4.7e-09 Score=74.52 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=64.8
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH----
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA---- 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---- 143 (200)
+..+...+++++|++++|+|+.++... |...+... ....|+++|+||+|+..... .......+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~------~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF------GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh------cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHH
Confidence 477888899999999999999876421 11112111 24579999999999975332 222222222
Q ss_pred -HHhCC---cEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 144 -KMWGC---HFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 144 -~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
...+. .++.+||+++.|++++++.|.+.+.
T Consensus 92 ~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 92 AAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 22332 6899999999999999999998764
No 328
>KOG0099|consensus
Probab=98.97 E-value=4.9e-09 Score=75.71 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=82.7
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
..++++++|.+|+...+..|..++...-++|||+..++ .+.++....++..+++... ...+-+|+.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw----L~tisvIlF 275 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW----LRTISVILF 275 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH----HhhhheeEE
Confidence 34579999999999999999999999999999998864 2234444455555555553 455788999
Q ss_pred eeCCCCCcccc------------------------------cCHHHHHHHHHH----------hC---CcEEEecccCCC
Q psy8700 123 GNKCDETENRE------------------------------VSAAEGEAEAKM----------WG---CHFMETSAKTNH 159 (200)
Q Consensus 123 ~nK~Dl~~~~~------------------------------~~~~~~~~~~~~----------~~---~~~~~vSa~~~~ 159 (200)
+||.|+...+. .....++.+.+. .| |.+..+.|.+-.
T Consensus 276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 99999843210 000111111111 11 234557788888
Q ss_pred cHHHHHHHHHHHHhccchh
Q psy8700 160 NVKELFAELLNLEKNRNIS 178 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~~ 178 (200)
+|+.+|+...+.+...+..
T Consensus 356 nIrrVFnDcrdiIqr~hlr 374 (379)
T KOG0099|consen 356 NIRRVFNDCRDIIQRMHLR 374 (379)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776653
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=2.7e-09 Score=82.16 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=67.5
Q ss_pred CChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH
Q psy8700 67 QFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM 145 (200)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 145 (200)
+.+.+.+..+.++|.+++|+|+.++. ....+..|+..+.. ...|++||+||+|+.+..+. .........
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--------~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~ 147 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--------TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQ 147 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEEchhcCChHHH--HHHHHHHHh
Confidence 34455566788999999999998875 44455666544422 44899999999999753321 112223345
Q ss_pred hCCcEEEecccCCCcHHHHHHHHHH
Q psy8700 146 WGCHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 146 ~~~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
+++.++.+||+++.|++++++.+..
T Consensus 148 ~g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 148 WGYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred cCCeEEEEEcCCCCCHHHHhhhhcc
Confidence 6789999999999999999998865
No 330
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.1e-08 Score=84.87 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=82.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCC---cCC-------Cc------cccee---EEEEeCCcEEEEEEEeCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRES---YIP-------TI------EDTYR---QVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---~~~-------~~------~~~~~---~~~~~~~~~~~~~~~D~~G~ 65 (200)
.+.-+|.++|...+|||||..+++...-... ... .. +-+.. .+....+ .+.+.++||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 4567899999999999999999975321000 000 00 00010 1222222 578999999999
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
-++..-....++-.|++++|+|+.+.-..+. ...|..... .+.|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~--------~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK--------YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh--------cCCCeEEEEECcccccc
Confidence 9999999999999999999999998765444 444544444 34899999999998654
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.94 E-value=4.3e-09 Score=79.31 Aligned_cols=89 Identities=21% Similarity=0.180 Sum_probs=67.0
Q ss_pred HhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcE
Q psy8700 72 QRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHF 150 (200)
Q Consensus 72 ~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (200)
....+.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+.+..+ ...........++++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--------~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v 141 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--------AGIEPVIVLTKADLLDDEE--EELELVEALALGYPV 141 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--------cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeE
Confidence 344688999999999999987 77777777765553 2379999999999965421 122233334467899
Q ss_pred EEecccCCCcHHHHHHHHHH
Q psy8700 151 METSAKTNHNVKELFAELLN 170 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~ 170 (200)
+.+||+++.|+++++..+..
T Consensus 142 ~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 142 LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEECCCCccHHHHHhhhcc
Confidence 99999999999999887764
No 332
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.2e-08 Score=78.79 Aligned_cols=133 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh--CCCCC--------CcCCC----------cc-cceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK--GTFRE--------SYIPT----------IE-DTYRQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~--~~~~~--------~~~~~----------~~-~~~~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.-+++-.|.+|||||..+|+. +.... ....+ .+ ..+...+.++-....+.+.||||++.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 468899999999999999863 11110 00011 01 22234556677778999999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG 147 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 147 (200)
+..-...-+..+|..+.|+|+..+-.-+. .++++... ..++|++=++||.|-..... .....+..+..+
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr--------lR~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~ 162 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR--------LRDIPIFTFINKLDREGRDP--LELLDEIEEELG 162 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh--------hcCCceEEEeeccccccCCh--HHHHHHHHHHhC
Confidence 98888888889999999999876532222 33333322 45699999999999765443 334455555666
Q ss_pred CcEEE
Q psy8700 148 CHFME 152 (200)
Q Consensus 148 ~~~~~ 152 (200)
+..++
T Consensus 163 i~~~P 167 (528)
T COG4108 163 IQCAP 167 (528)
T ss_pred cceec
Confidence 54333
No 333
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.90 E-value=5.5e-09 Score=70.57 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=36.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc--eeEEEEeCCcEEEEEEEeCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT--YRQVISCNKNICTLQITDTTGSH 66 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~ 66 (200)
-+++++|.+|+|||||+|++.+..... ....++. ....+..++ .+.+|||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVS--VSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee--eCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 389999999999999999999876532 1111111 122333333 47999999953
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=7.1e-09 Score=72.19 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=37.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~ 65 (200)
..++++++|.||+|||||+|+|.+..... ....+++++ ..+..+. .+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~--~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN--VGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce--ecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 45899999999999999999999865421 112222222 2222222 5889999994
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.5e-08 Score=78.04 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=66.1
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHhCCcEEEe
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~v 153 (200)
...++|.+++|++.....++..+..|+..... ...|++||+||+|+....+.. ...........+++++++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~v 188 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET--------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMV 188 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 35789999999999888888888888764432 347999999999997543211 112222334567899999
Q ss_pred cccCCCcHHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELLN 170 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~ 170 (200)
||+++.|++++++.+..
T Consensus 189 SA~tg~GideL~~~L~~ 205 (347)
T PRK12288 189 SSHTGEGLEELEAALTG 205 (347)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998865
No 336
>PRK00098 GTPase RsgA; Reviewed
Probab=98.85 E-value=1.4e-08 Score=76.96 Aligned_cols=86 Identities=23% Similarity=0.200 Sum_probs=61.1
Q ss_pred ccccCCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700 75 SISKGHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 153 (200)
.+.++|.+++|+|+.++..... +..|+..+.. .+.|+++|+||+|+.+..+. ...........+++++.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--------~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--------NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEE
Confidence 4689999999999988765444 3455444332 34799999999999633221 122233344567899999
Q ss_pred cccCCCcHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELL 169 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~ 169 (200)
||+++.|++++++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998764
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.85 E-value=1.1e-08 Score=70.41 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=36.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCN-KNICTLQITDTTGS 65 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~ 65 (200)
...+|+++|.||+|||||+|+|.+... ......+++++...... +. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~--~~~~~~~g~T~~~~~~~~~~--~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV--CKVAPIPGETKVWQYITLMK--RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc--eeeCCCCCeeEeEEEEEcCC--CEEEEECcCC
Confidence 467899999999999999999988553 11222222332222211 12 3789999993
No 338
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.83 E-value=6.2e-08 Score=73.39 Aligned_cols=138 Identities=16% Similarity=0.258 Sum_probs=79.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCC----------cCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCC------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRES----------YIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ------ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~------ 67 (200)
.-.+.|+++|+.|.|||||+|.|++...... ..++.. ..+...+.-++....+.++||||.-+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3468999999999999999999998643222 111111 11122334467778999999999322
Q ss_pred -Ch-------hhHhhccc--------------cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 68 -FP-------AMQRLSIS--------------KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 68 -~~-------~~~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
|. .....|+. ++++++|.+..+.. .+..+.-.. |.+.. ....+|=|+.|
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~--Mk~ls------~~vNlIPVI~K 171 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEA--MKRLS------KRVNLIPVIAK 171 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHH--HHHHh------cccCeeeeeec
Confidence 11 11111111 35888888876543 333333222 44433 33567778899
Q ss_pred CCCCcccccCH--HHHHHHHHHhCCcEE
Q psy8700 126 CDETENREVSA--AEGEAEAKMWGCHFM 151 (200)
Q Consensus 126 ~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 151 (200)
+|.....+... ....+....+++++|
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 99865443322 122333445566655
No 339
>KOG1954|consensus
Probab=98.81 E-value=4.6e-08 Score=74.11 Aligned_cols=120 Identities=19% Similarity=0.305 Sum_probs=77.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc--cceeEEEEeC------CcE----------------------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE--DTYRQVISCN------KNI---------------------- 54 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~------~~~---------------------- 54 (200)
+...-|+++|.=+.||||||+.|+...|+...+...+ +.+...++.+ |..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4567899999999999999999999887533222211 1111222111 111
Q ss_pred -----------EEEEEEeCCCCC-----------CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCC
Q psy8700 55 -----------CTLQITDTTGSH-----------QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGAN 112 (200)
Q Consensus 55 -----------~~~~~~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (200)
-.+.++||||.- .+......+..++|.++++||..--+........ +....+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v---i~aLkG--- 209 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV---IDALKG--- 209 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH---HHHhhC---
Confidence 157799999932 3456778888999999999997644333333333 333332
Q ss_pred CCCCCcEEEEeeCCCCCccc
Q psy8700 113 ELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 113 ~~~~~p~ivv~nK~Dl~~~~ 132 (200)
.+-.+-||+||+|..+..
T Consensus 210 --~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 210 --HEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred --CcceeEEEeccccccCHH
Confidence 445788999999987644
No 340
>KOG2655|consensus
Probab=98.80 E-value=1.4e-07 Score=71.96 Aligned_cols=142 Identities=18% Similarity=0.267 Sum_probs=81.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCC--c------CC-Ccc-cceeEEEEeCCcEEEEEEEeCCCCCC-------C
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--Y------IP-TIE-DTYRQVISCNKNICTLQITDTTGSHQ-------F 68 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~------~~-~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~-------~ 68 (200)
-.+.++++|+.|.|||||+|+|+....... + .+ +.. ..+.....-++..+++.++||||.-+ |
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999987643221 0 00 111 11112223356778999999999321 1
Q ss_pred h-------hhHhh-----------ccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 69 P-------AMQRL-----------SIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 69 ~-------~~~~~-----------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
. +.... -+. ++++++|.+..+.. .+..+.... +.... ....+|=|+-|+|.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~--Mk~l~------~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEF--MKKLS------KKVNLIPVIAKADT 170 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHH--HHHHh------ccccccceeecccc
Confidence 1 11111 222 46899998876543 233333222 33333 44677888899998
Q ss_pred CcccccCHH--HHHHHHHHhCCcEEEeccc
Q psy8700 129 TENREVSAA--EGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 129 ~~~~~~~~~--~~~~~~~~~~~~~~~vSa~ 156 (200)
....+.... .........++++|.....
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcceecCCCC
Confidence 765543322 2333344566766665543
No 341
>KOG0448|consensus
Probab=98.80 E-value=1.7e-07 Score=75.98 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=55.5
Q ss_pred EEEEEeCCCCCC---ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 56 TLQITDTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 56 ~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
.+.++|.||.+. ...-...+..++|++|+|.++.+.-+......+. ... ..+..++|+.||+|.....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~----~vs-----~~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH----KVS-----EEKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH----Hhh-----ccCCcEEEEechhhhhccc
Confidence 678899999653 3444555667899999999887765544433322 222 1246788999999986654
Q ss_pred ccCHHHHHHHHHHh--------CCcEEEecccC
Q psy8700 133 EVSAAEGEAEAKMW--------GCHFMETSAKT 157 (200)
Q Consensus 133 ~~~~~~~~~~~~~~--------~~~~~~vSa~~ 157 (200)
+....+......+. .-.+|.||++.
T Consensus 278 ~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 278 PECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 33322222222222 22578888543
No 342
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=1.7e-08 Score=71.65 Aligned_cols=58 Identities=28% Similarity=0.248 Sum_probs=36.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC------CcCCCcccceeEEEEeCCcEEEEEEEeCCCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE------SYIPTIEDTYRQVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (200)
..+++++|.+|+|||||+|+|.+..... ......+++++....+.... .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 4689999999999999999999754311 12222233333322221111 4799999994
No 343
>KOG2486|consensus
Probab=98.76 E-value=1.5e-08 Score=73.91 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=90.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC-CcccceeEEEEeCCcEEEEEEEeCCCC----------CCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCNKNICTLQITDTTGS----------HQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~ 72 (200)
++....+++.|..|+|||||+|.+........... ..+.+.......-+. ...++|.||. ..+....
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~--~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK--SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc--eEEEEecCCcccccCCccCcchHhHhH
Confidence 46679999999999999999999987554322222 344443332222222 5889999991 2334455
Q ss_pred hhccccCC---EEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------ccCHHH--HH
Q psy8700 73 RLSISKGH---AFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------EVSAAE--GE 140 (200)
Q Consensus 73 ~~~~~~~~---~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~--~~ 140 (200)
..|+-+-+ .+++.+|++-+ ++.... ..+++.+ ...|+.+|+||+|..... ...... ..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~ 280 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ 280 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--------cCCCeEEeeehhhhhhhccccccCccccceeehh
Confidence 55554432 33344444422 111111 1112332 458999999999975321 111111 11
Q ss_pred HHHH---HhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 141 AEAK---MWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 141 ~~~~---~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.+.+ ....|++.+|+-++.|+++++-.|.+..
T Consensus 281 ~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 281 GLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred hccccceeccCCceeeecccccCceeeeeehhhhh
Confidence 1111 1224788899999999999887776644
No 344
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.8e-07 Score=68.96 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=100.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh---CC-------CCC--CcCCCcc-cce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK---GT-------FRE--SYIPTIE-DTY--RQVISCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~---~~-------~~~--~~~~~~~-~~~--~~~~~~~~~~~~~~~~D~~G~~~~ 68 (200)
.-+.++|..+|...-|||||..++.. .. |.. +...... +.+ ...+..+..+.....+|+||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 34568999999999999999888753 11 100 0000000 111 123333444567889999999988
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHH
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKM 145 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~ 145 (200)
-.....-....|+.|+|++++|...-+..+..+ +.+..+ -..+++++||+|+.+..+.... +..++...
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqvG------vp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQVG------VPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcC------CcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 777777777889999999999865544444433 333332 2356788899999875543322 23334444
Q ss_pred hCC-----cEEEecccC---C-----CcHHHHHHHHHHHHhc
Q psy8700 146 WGC-----HFMETSAKT---N-----HNVKELFAELLNLEKN 174 (200)
Q Consensus 146 ~~~-----~~~~vSa~~---~-----~~i~~~~~~i~~~~~~ 174 (200)
+++ |++.-||+. | ..|.++++.+-+++..
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 543 677666442 2 2367777777776643
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.2e-07 Score=75.68 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=85.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
-++++-++++||||.||||||++|...-. ..++.+..-....+.+.+..+.|.++|. ..........-+|.++
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp~---Dl~~miDvaKIaDLVl 138 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECPS---DLHQMIDVAKIADLVL 138 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeChH---HHHHHHhHHHhhheeE
Confidence 45678899999999999999999986322 1122222222334467888999999994 2333344556689999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH-----HHHHHHH-HhCCcEEEeccc
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA-----EGEAEAK-MWGCHFMETSAK 156 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-----~~~~~~~-~~~~~~~~vSa~ 156 (200)
+++|.+-+-.+.....+ + +....+ -..++-|+|..|+-....-... ....+.. ..|+.+|..|..
T Consensus 139 LlIdgnfGfEMETmEFL-n-il~~HG------mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 139 LLIDGNFGFEMETMEFL-N-ILISHG------MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EEeccccCceehHHHHH-H-HHhhcC------CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 99999877666654332 2 333332 1346678899998653211111 1122222 346778888743
No 346
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.73 E-value=4.9e-08 Score=73.31 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=37.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~ 65 (200)
...++++++|.||+|||||+|+|.+...... ...+++++ ..+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~--~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV--GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3568999999999999999999997653211 11222222 2233322 4789999996
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=4.9e-08 Score=68.14 Aligned_cols=57 Identities=26% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~ 65 (200)
+..++++++|.+|+|||||+|++.+...... .+..+.+. ...+..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998665211 11111111 1222332 35789999994
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=5.8e-08 Score=66.69 Aligned_cols=58 Identities=24% Similarity=0.258 Sum_probs=38.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-EEeCCcEEEEEEEeCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQITDTTGS 65 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G~ 65 (200)
.....+++++|.+|+|||||+|++.+... ..+.++.+.+.... ...+. .+.+|||||.
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 34568999999999999999999987542 22333333322222 22222 5899999993
No 349
>KOG1547|consensus
Probab=98.71 E-value=3e-07 Score=65.92 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=80.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCC----ccccee---EE--EEeCCcEEEEEEEeCCCCCC-------C-
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPT----IEDTYR---QV--ISCNKNICTLQITDTTGSHQ-------F- 68 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~----~~~~~~---~~--~~~~~~~~~~~~~D~~G~~~-------~- 68 (200)
.++|+++|.+|.||||++|.+........ ..+. .+.+.. .+ +.-++...++.++||||.-. |
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 58999999999999999999976443221 1111 111111 11 12244557889999999321 1
Q ss_pred ------hhhHhhccc--------------cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 69 ------PAMQRLSIS--------------KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 69 ------~~~~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
+.+...|++ +++++++.+..+.. +++.+.-.+ +.+.. .-..++=|+-|+|-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDief--lkrLt------~vvNvvPVIakaDt 196 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEF--LKRLT------EVVNVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHH--HHHHh------hhheeeeeEeeccc
Confidence 112222222 25788888776643 333332221 22222 22456778899996
Q ss_pred Ccccc--cCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 129 TENRE--VSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
..-.+ .-.+.........++.+|+-.+.+-+.=+..++
T Consensus 197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 53222 122233333445677777766555443333333
No 350
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.70 E-value=7.2e-08 Score=72.78 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=38.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSH 66 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~ 66 (200)
...++++++|.||+|||||+|+|.+..... ....+++++. .+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~--~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK--TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc--cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 356899999999999999999999865421 1222222322 222222 48899999964
No 351
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.68 E-value=3.7e-07 Score=80.84 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=68.6
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCC------cCCCcccceeEEEEeCCcEEEEEEEeCCCCC--------CChhhHhhc
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGTFRES------YIPTIEDTYRQVISCNKNICTLQITDTTGSH--------QFPAMQRLS 75 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~ 75 (200)
.+|+|++|+||||++++- +-.++-. .....+.+......+.++ -.++||+|.. .....+..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999986 3222111 111122222223334344 5699999921 122333333
Q ss_pred c---------ccCCEEEEEeeCCCh-----h----HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 76 I---------SKGHAFILVYSCTSR-----Q----SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 76 ~---------~~~~~~i~v~d~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+ +..+++|+++|+.+- . .-..++..+..+.+..+ -..|+.|++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-----~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-----ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEecchhhc
Confidence 3 247999999997642 1 12345555666666664 6799999999999874
No 352
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.67 E-value=4.3e-07 Score=69.32 Aligned_cols=159 Identities=21% Similarity=0.165 Sum_probs=95.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC----------cc-----cceeEEEEeC-----------------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT----------IE-----DTYRQVISCN----------------- 51 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~----------~~-----~~~~~~~~~~----------------- 51 (200)
.+..+.++..|....|||||+-.|..+..+.....+ .. +.....+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456788999999999999998888654433211111 00 0000011111
Q ss_pred ----CcEEEEEEEeCCCCCCChhhH--hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 52 ----KNICTLQITDTTGSHQFPAMQ--RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 52 ----~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
.....+.|+||.|++.|.+.. -.+-++.|..++++.+++.-+--. ..-+-.+. ..+.|+++++||
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--------a~~lPviVvvTK 264 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--------AMELPVIVVVTK 264 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--------hhcCCEEEEEEe
Confidence 112367899999999887643 346667899999999988654222 22222222 244899999999
Q ss_pred CCCCcccccCHHH--H----------------------HHHHHHhC---CcEEEecccCCCcHHHHHHHHHHH
Q psy8700 126 CDETENREVSAAE--G----------------------EAEAKMWG---CHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 126 ~Dl~~~~~~~~~~--~----------------------~~~~~~~~---~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
+|+.......... . ...+...+ .|+|.+|+-+|.|++-+.+.+..+
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 9986542111100 0 01111112 389999999999987666655543
No 353
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.67 E-value=2.5e-06 Score=66.28 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=90.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh-----------------CCCCC-----CcCCCcccce---eEEEEe-CCcEEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK-----------------GTFRE-----SYIPTIEDTY---RQVISC-NKNICTL 57 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~-----------------~~~~~-----~~~~~~~~~~---~~~~~~-~~~~~~~ 57 (200)
....+=|+++||...||||||+||.. +..+. ....+.+-+. ...+.+ ++..+++
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 45678899999999999999999843 11111 1111111111 122333 4667899
Q ss_pred EEEeCCCCC-----------CChhhHhhccc--------------------cCCEEEEEeeCC--C--hhH-HHHHHHHH
Q psy8700 58 QITDTTGSH-----------QFPAMQRLSIS--------------------KGHAFILVYSCT--S--RQS-LEELRPIW 101 (200)
Q Consensus 58 ~~~D~~G~~-----------~~~~~~~~~~~--------------------~~~~~i~v~d~~--~--~~~-~~~~~~~~ 101 (200)
.++|+-|.. ..+-....++. ..-++++.-|.+ + ++. ...-+...
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 999999911 00111111111 123555555543 2 222 22233344
Q ss_pred HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC--CcHHHHHHHHHHHH
Q psy8700 102 EVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN--HNVKELFAELLNLE 172 (200)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~--~~i~~~~~~i~~~~ 172 (200)
..+.... .|++|++|-.+-. .+....+...+...++.+++.+++.+- ..|..+++.++-.+
T Consensus 174 ~ELk~ig--------KPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 174 EELKEIG--------KPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HHHHHhC--------CCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 4455444 7999999988732 333556778888899999999886543 35666666555443
No 354
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.67 E-value=1.1e-07 Score=74.00 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=67.3
Q ss_pred CCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH----
Q psy8700 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE---- 140 (200)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---- 140 (200)
.+.+..+...+...++++++|+|+.+.. ..|...+.+.. ...|+++|+||+|+..... ......
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~------~~~piilV~NK~DLl~k~~-~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV------GGNPVLLVGNKIDLLPKSV-NLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh------CCCCEEEEEEchhhCCCCC-CHHHHHHHHH
Confidence 3467788888888999999999997654 22333444433 2479999999999965322 222222
Q ss_pred HHHHHhCC---cEEEecccCCCcHHHHHHHHHHH
Q psy8700 141 AEAKMWGC---HFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 141 ~~~~~~~~---~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
.+.+..++ .++.+||++|.|++++++.+.+.
T Consensus 118 ~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 118 KRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 23445565 48999999999999999999765
No 355
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.66 E-value=6e-07 Score=65.31 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=53.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC--CCC--CCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCChh------hHh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG--TFR--ESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQFPA------MQR 73 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~------~~~ 73 (200)
.+-.-|+++|++++|||+|+|+|.+. .+. ....+++.+.+....... +....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999987 542 222233333333322221 2346899999999654322 222
Q ss_pred hcccc--CCEEEEEeeCCC
Q psy8700 74 LSISK--GHAFILVYSCTS 90 (200)
Q Consensus 74 ~~~~~--~~~~i~v~d~~~ 90 (200)
..+.. ++.+|+..+...
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 23333 688888777654
No 356
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=1.1e-07 Score=65.39 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=56.7
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
.+..+|.+++|+|+.++..... ..+...+... ..+.|+++|+||+|+..+.+. ......+...+....+.+|
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~------~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iS 76 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE------KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHAS 76 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhc------cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEee
Confidence 5678999999999988643211 2222222221 234799999999999643321 1111122222222357899
Q ss_pred ccCCCcHHHHHHHHHHHH
Q psy8700 155 AKTNHNVKELFAELLNLE 172 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~ 172 (200)
|+.+.|++++++.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999998765
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.66 E-value=1.2e-07 Score=65.06 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (200)
....+++++|.+|+|||||+|++.+..... ...+...... .....+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~-~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ-QEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce-EEEEec---CCEEEEECCCC
Confidence 456889999999999999999999855311 1112211111 122222 25899999993
No 358
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=5.5e-07 Score=69.49 Aligned_cols=82 Identities=17% Similarity=0.059 Sum_probs=55.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CC-CcCCCcccceeEEEEeCC---------------cEEEEEEEeCCCCCC---
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTF-RE-SYIPTIEDTYRQVISCNK---------------NICTLQITDTTGSHQ--- 67 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~--- 67 (200)
.+++++|.|++|||||+|.|++... .. .|..++.......+.+.+ ....+++.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 32 333332233333333332 124789999999543
Q ss_pred ----ChhhHhhccccCCEEEEEeeCC
Q psy8700 68 ----FPAMQRLSISKGHAFILVYSCT 89 (200)
Q Consensus 68 ----~~~~~~~~~~~~~~~i~v~d~~ 89 (200)
........++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1223444677899999999985
No 359
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.64 E-value=4.4e-07 Score=62.44 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=37.8
Q ss_pred EEEEEEEeCCCCCCChhhHhhc--------cccCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGN 124 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 124 (200)
..+..++|++|......+.... ....+.+++++|...-.. ..+...+...+.. .=+|++|
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----------ad~ivln 154 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----------ADRILLN 154 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----------CCEEEEe
Confidence 3577899999987655544332 224688999999754332 1111222222222 1288999
Q ss_pred CCCC
Q psy8700 125 KCDE 128 (200)
Q Consensus 125 K~Dl 128 (200)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9996
No 360
>KOG1491|consensus
Probab=98.62 E-value=1.2e-07 Score=71.06 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=57.7
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEe---------------CCcEEEEEEEeCCC
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISC---------------NKNICTLQITDTTG 64 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~D~~G 64 (200)
|.+.++.++|+++|.|++|||||+|.|......+...|-+. +.-...+.+ ......++++|++|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 34567789999999999999999999998765443333221 222222211 11235889999999
Q ss_pred CC----CChhhHhhcc---ccCCEEEEEeeCC
Q psy8700 65 SH----QFPAMQRLSI---SKGHAFILVYSCT 89 (200)
Q Consensus 65 ~~----~~~~~~~~~~---~~~~~~i~v~d~~ 89 (200)
.- .-..+...++ +.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 43 2334444444 4589999888864
No 361
>KOG0466|consensus
Probab=98.61 E-value=2.7e-08 Score=73.54 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=95.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC------------------------------CC-----CCcCCCcccceeEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT------------------------------FR-----ESYIPTIEDTYRQVI 48 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~------------------------------~~-----~~~~~~~~~~~~~~~ 48 (200)
++..++|.-+|...-||||+++++++-. ++ ..+.+..++......
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4567899999999999999999885410 00 001111111111000
Q ss_pred -EeCC---cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700 49 -SCNK---NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124 (200)
Q Consensus 49 -~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 124 (200)
...+ -...+.|+|+||++-.......-..-.|++++++..++...--+...-+..+.-. .-.+++++-|
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-------~LkhiiilQN 187 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-------KLKHIIILQN 187 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-------hhceEEEEec
Confidence 0011 1146789999997764443333333346667666665422111111112112211 1147899999
Q ss_pred CCCCCcccccCHH--HHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 125 KCDETENREVSAA--EGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 125 K~Dl~~~~~~~~~--~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
|+|+....+..++ ..+.|.+. .+.|++++||.-+.||+-+.+.|...+...
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 9999875432222 22333332 356999999999999999999999987543
No 362
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.59 E-value=3e-06 Score=57.24 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=81.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCC-CCC--------------CC-
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT-GSH--------------QF- 68 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-G~~--------------~~- 68 (200)
....||.+.|+||+||||++.++...-- ...-...+++...+.-++...=+.+.|+. |.. +|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 3578999999999999999988864211 11123445555666656666667777776 310 11
Q ss_pred ------hhh----HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH
Q psy8700 69 ------PAM----QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE 138 (200)
Q Consensus 69 ------~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 138 (200)
... ....+..+| ++++|=-.+..+.. ..+...+..... ...|++.++.+.+- + ..
T Consensus 81 V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks-~~f~~~ve~vl~-----~~kpliatlHrrsr-~------P~ 145 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKS-KKFREAVEEVLK-----SGKPLIATLHRRSR-H------PL 145 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhcc-HHHHHHHHHHhc-----CCCcEEEEEecccC-C------hH
Confidence 111 122333456 44555444433322 444455555553 55788888887652 1 12
Q ss_pred HHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 139 GEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 139 ~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
.+.+....+..+| .+..|=+.+++.|.+.+.
T Consensus 146 v~~ik~~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 146 VQRIKKLGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred HHHhhhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence 2233233333333 344455588888887664
No 363
>KOG1143|consensus
Probab=98.59 E-value=1.4e-07 Score=71.71 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=88.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC-----------------------ccccee-EEEE----------eCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-----------------------IEDTYR-QVIS----------CNK 52 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~-~~~~----------~~~ 52 (200)
+++++++|.-.+|||||+--|..+..+...... .++..+ ..+. .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 589999999999999998777654332210000 000000 0000 011
Q ss_pred cEEEEEEEeCCCCCCChhhHhhcccc--CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISK--GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
..-.+.|+|.+|+.+|......-+.. .+..++|++++..-... .+.-+..+.. .+.|++|+++|+|+.+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A--------L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA--------LNIPFFVLVTKMDLVD 317 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH--------hCCCeEEEEEeecccc
Confidence 22368899999999887766655544 47788888877654322 2333333333 3389999999999976
Q ss_pred cccc-----------------------C-HHHHHHHHHH---hCC-cEEEecccCCCcHHHHHH
Q psy8700 131 NREV-----------------------S-AAEGEAEAKM---WGC-HFMETSAKTNHNVKELFA 166 (200)
Q Consensus 131 ~~~~-----------------------~-~~~~~~~~~~---~~~-~~~~vSa~~~~~i~~~~~ 166 (200)
.... . ..++...++. .++ |+|.+|+-.|.+++-+-.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 5111 0 0111111121 233 899999999999765443
No 364
>PRK14974 cell division protein FtsY; Provisional
Probab=98.58 E-value=2.5e-07 Score=70.93 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=54.0
Q ss_pred EEEEEEeCCCCCCChh-hH---hhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 55 CTLQITDTTGSHQFPA-MQ---RLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
+.+.++||+|...... +. ... ..+.+.+++|+|+......-. ....+.... .+--+++||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~--------~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV--------GIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC--------CCCEEEEeeecC
Confidence 4799999999664322 11 111 124688899999876432111 111222212 245789999996
Q ss_pred CcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
... .-.. .......+.|+.+++ .|++++++..
T Consensus 292 ~~~--~G~~--ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAK--GGAA--LSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCC--ccHH--HHHHHHHCcCEEEEe--CCCChhhccc
Confidence 332 2222 223334688888887 6888766543
No 365
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.57 E-value=1.8e-07 Score=71.62 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=39.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSH 66 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~ 66 (200)
...+++++|.||+|||||||+|.+... ......++++.. .+..+.. +.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~--~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV--AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc--eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 458899999999999999999998775 223333344432 3333333 8999999954
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=4.1e-07 Score=63.48 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=61.3
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC 148 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 148 (200)
.......++++|.+++|+|+.++...... . +.... ...|+++|+||+|+.+.... .....+.+..+.
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~ 76 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGE 76 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCC
Confidence 34556678899999999999876542221 1 11111 23689999999998643211 111122223345
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
.++.+||+++.|++++.+.+...+.
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 7899999999999999999988763
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=2.9e-07 Score=63.17 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=55.4
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
|.+++|+|+.++.+... .++.. .... ..+.|+++|+||+|+....+.. .....+....+..++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~-----~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIK-----EKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHh-----cCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCc
Confidence 68899999988765443 22221 1111 2458999999999996532211 11112222334578999999999
Q ss_pred cHHHHHHHHHHHHh
Q psy8700 160 NVKELFAELLNLEK 173 (200)
Q Consensus 160 ~i~~~~~~i~~~~~ 173 (200)
|+.++++.+.+...
T Consensus 72 gi~~L~~~i~~~~~ 85 (155)
T cd01849 72 GIEKKESAFTKQTN 85 (155)
T ss_pred ChhhHHHHHHHHhH
Confidence 99999999987654
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.53 E-value=6.1e-06 Score=62.99 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=58.1
Q ss_pred EEEEEEeCCCCCCChhhHhhcccc--------CCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISK--------GHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~--------~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
....++++.|......+...+... .|+++-|+|+..-..... ..... ..... ..=+|++||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~---~~Qia-------~AD~ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELA---EDQLA-------FADVIVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHH---HHHHH-------hCcEEEEec
Confidence 567789999988876666665552 477888988765433222 22222 22221 122999999
Q ss_pred CCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
.|+.+..+....+.........++++.+|. .+....+++
T Consensus 155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 155 TDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 999887653222222223334568888876 333343333
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.52 E-value=2.1e-06 Score=67.72 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=69.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh----CCC------CCCcCCCccc-------ceeEE-EEe----C------------
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK----GTF------RESYIPTIED-------TYRQV-ISC----N------------ 51 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~----~~~------~~~~~~~~~~-------~~~~~-~~~----~------------ 51 (200)
++.-|+++|++||||||++.+|.. ... ...+.+.... ..... +.. +
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999988852 111 1111111000 00000 100 0
Q ss_pred -CcEEEEEEEeCCCCCCChhhHhh------ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700 52 -KNICTLQITDTTGSHQFPAMQRL------SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124 (200)
Q Consensus 52 -~~~~~~~~~D~~G~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 124 (200)
...+.+.|+||+|.......... .....+.+++|+|+.-+..-. .....+.+.. .+.-+|+|
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~~--------~~~g~IlT 247 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDSV--------DVGSVIIT 247 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhcc--------CCcEEEEE
Confidence 12468999999996543321111 122467899999987543221 1122222222 36689999
Q ss_pred CCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 125 KCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
|.|....- -. ........+.|+.+++
T Consensus 248 KlD~~arg--G~--aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 248 KLDGHAKG--GG--ALSAVAATKSPIIFIG 273 (429)
T ss_pred CccCCCCc--cH--HhhhHHHHCCCeEEEc
Confidence 99963211 11 1223334566655554
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.47 E-value=2.7e-06 Score=64.95 Aligned_cols=95 Identities=19% Similarity=0.118 Sum_probs=54.2
Q ss_pred cEEEEEEEeCCCCCCChhh----Hhhc--------cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE
Q psy8700 53 NICTLQITDTTGSHQFPAM----QRLS--------ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 120 (200)
..+.+.++||||....... .... -...+..++|+|++... ..+... ....... .+.-
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~--------~~~g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV--------GLTG 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC--------CCCE
Confidence 3468999999996542211 1111 12467889999998543 222221 1122111 3557
Q ss_pred EEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 121 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
+|+||.|.... .-. ........+.|+..++ .|++++++
T Consensus 264 iIlTKlD~t~~--~G~--~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAK--GGV--VFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCC--ccH--HHHHHHHHCCCEEEEe--CCCChhhC
Confidence 99999995322 222 2333455688999988 67777554
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.45 E-value=4.5e-07 Score=69.98 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=33.8
Q ss_pred EEEECCCCCCHHHHHHHHhhCCC-CCCcCCCc---c--cc-eeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGTF-RESYIPTI---E--DT-YRQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~~-~~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
++|+|.+|||||||+|+|++... .....+.. + .+ ....+.+.+. ..++||||...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~ 269 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVRE 269 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCc
Confidence 78999999999999999997542 11122211 1 11 1222333322 25999999665
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.45 E-value=3.3e-07 Score=62.64 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
-.++++|++|||||||+|+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999863
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.44 E-value=9.2e-07 Score=59.68 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=51.2
Q ss_pred hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700 73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME 152 (200)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
...+..+|++++|+|+.++.+... ..+...+.... .+.|+++|+||+|+.+... ...........+..++.
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~------~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~ 76 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD------PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVF 76 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc------CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEE
Confidence 446778999999999988765432 12222222221 3479999999999864332 12223334455678999
Q ss_pred ecccCCCc
Q psy8700 153 TSAKTNHN 160 (200)
Q Consensus 153 vSa~~~~~ 160 (200)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998864
No 374
>PRK01889 GTPase RsgA; Reviewed
Probab=98.44 E-value=1.1e-06 Score=68.37 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=59.2
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-HhCCcEEEe
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-MWGCHFMET 153 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~v 153 (200)
...++|.+++|+++..+-....+..++..+.... .|.+||+||+||.+..+ .....+.. ..+++++.+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~--------i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~v 177 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESG--------AEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAV 177 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC--------CCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEE
Confidence 3678999999999975445556666665555433 67799999999975421 11111111 346799999
Q ss_pred cccCCCcHHHHHHHHH
Q psy8700 154 SAKTNHNVKELFAELL 169 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~ 169 (200)
|++++.|++++.+++.
T Consensus 178 Sa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 178 SALDGEGLDVLAAWLS 193 (356)
T ss_pred ECCCCccHHHHHHHhh
Confidence 9999999999988874
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=98.43 E-value=5.6e-07 Score=69.53 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
.++|+|++|+|||||+|+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999998754
No 376
>KOG0447|consensus
Probab=98.42 E-value=1.7e-05 Score=63.47 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred EEEEEeCCCCC-------------CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 56 TLQITDTTGSH-------------QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 56 ~~~~~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
...++|.||.. ...++..+++++.+++|+|+--. +++.-+.....+.... ++.....|+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~----DP~GrRTIfV 485 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQM----DPHGRRTIFV 485 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhc----CCCCCeeEEE
Confidence 67799999932 23467788999999999998532 2333344444455555 3566788999
Q ss_pred eeCCCCCcccccC
Q psy8700 123 GNKCDETENREVS 135 (200)
Q Consensus 123 ~nK~Dl~~~~~~~ 135 (200)
+||.|+.+.+-..
T Consensus 486 LTKVDlAEknlA~ 498 (980)
T KOG0447|consen 486 LTKVDLAEKNVAS 498 (980)
T ss_pred EeecchhhhccCC
Confidence 9999997764333
No 377
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.40 E-value=2.2e-07 Score=65.22 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=40.2
Q ss_pred EEEEEEEeCCCCCCChhhH--hh---ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 54 ICTLQITDTTGSHQFPAMQ--RL---SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~--~~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
.....++++.|......+. .. ..-..+.++.|+|...-.........+....... =+|++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A----------DvIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA----------DVIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-----------SEEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc----------CEEEEecccc
Confidence 4577888999966655551 00 1124588999999976433333333332222222 2999999999
Q ss_pred Cccc
Q psy8700 129 TENR 132 (200)
Q Consensus 129 ~~~~ 132 (200)
.+..
T Consensus 154 ~~~~ 157 (178)
T PF02492_consen 154 VSDE 157 (178)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7765
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.39 E-value=2.3e-06 Score=64.34 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=62.6
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC 148 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 148 (200)
.......++.+|++++|+|+.++.+.... . +.+.. .+.|+++|+||+|+.+.... ..........+.
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~----i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~ 78 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNP-M----IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGI 78 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCCh-h----HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCC
Confidence 34556688899999999999876543321 1 11111 23699999999998543211 111112222456
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+++.+||+++.|+.++.+.+.+.+.+
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 78999999999999999999887754
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.39 E-value=1.7e-06 Score=64.74 Aligned_cols=94 Identities=18% Similarity=0.074 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCCCCChhhHhh-------cc-----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEE
Q psy8700 54 ICTLQITDTTGSHQFPAMQRL-------SI-----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~-------~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 121 (200)
.+.+.++||||.......... .. ...+.+++|+|++... +.+.. ...+.+.. .+.-+
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~--------~~~g~ 222 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV--------GLTGI 222 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC--------CCCEE
Confidence 368999999996643322111 11 1378999999997542 22221 12222222 24589
Q ss_pred EeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+||.|....- -. ........+.|+.+++ .|++++++
T Consensus 223 IlTKlDe~~~~--G~--~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 223 ILTKLDGTAKG--GI--ILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEccCCCCCc--cH--HHHHHHHHCcCEEEEe--CCCChHhC
Confidence 99999963321 11 2233335578888888 67776554
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.39 E-value=3.1e-06 Score=57.52 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+.+.++||+|... ....++..+|.++++....- .+.+....-.+.+..+ ++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~~~~~~----------~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGA---GDDIQAIKAGIMEIAD----------IVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCc---hhHHHHhhhhHhhhcC----------EEEEeCCC
Confidence 46889999999553 22348888998888886652 2332222223343332 89999998
No 381
>KOG0463|consensus
Probab=98.35 E-value=2.8e-06 Score=64.92 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=81.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC------------------CcCCCcc-------------------c-ceeEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE------------------SYIPTIE-------------------D-TYRQVI 48 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~-------------------~-~~~~~~ 48 (200)
+++++++|...+|||||+--|..+..+. ...++.+ . ...+.-
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 5899999999999999976664322211 0000000 0 111111
Q ss_pred EeCCcEEEEEEEeCCCCCCChhhHhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 49 SCNKNICTLQITDTTGSHQFPAMQRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
..++..-.+.|+|.+|+++|......-+. -.|..++.+-.+.. .+.....-+..... ...|+++|++|+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa--------L~VPVfvVVTKI 283 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA--------LHVPVFVVVTKI 283 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh--------hcCcEEEEEEee
Confidence 12233346789999999987664433222 23555555544432 12222222222222 338999999999
Q ss_pred CCCcccccCHHH--HHHHH--------------------------HHhCCcEEEecccCCCcHHHHHHH
Q psy8700 127 DETENREVSAAE--GEAEA--------------------------KMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 127 Dl~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
|....+...+.. ...+. .+.-||+|.+|..+|.|+.-+...
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 985443222211 11111 222256888999999998655443
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.34 E-value=1.4e-06 Score=64.31 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
-.++++|.+|+|||||+|+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 367999999999999999998753
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=1.7e-05 Score=61.73 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.++|+|++|+||||++.+|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999865
No 384
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.31 E-value=1.3e-05 Score=61.39 Aligned_cols=86 Identities=7% Similarity=-0.060 Sum_probs=48.4
Q ss_pred EEEEEEeCCCCCCChhhHhhccc--------cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSIS--------KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
....++++.|......+...++. ..++++.|+|+.+-..... .......+.. ..=+|++||+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~--~~~~~~~Qi~--------~AD~IvlnK~ 160 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--QFTIAQSQVG--------YADRILLTKT 160 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc--ccHHHHHHHH--------hCCEEEEecc
Confidence 46788999998877666665532 2488999999875332111 1111112222 1228999999
Q ss_pred CCCcccccCHHHHHHHHHHh--CCcEEEec
Q psy8700 127 DETENREVSAAEGEAEAKMW--GCHFMETS 154 (200)
Q Consensus 127 Dl~~~~~~~~~~~~~~~~~~--~~~~~~vS 154 (200)
|+.... .......+.. .++++.++
T Consensus 161 Dl~~~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 161 DVAGEA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred ccCCHH----HHHHHHHHHhCCCCEEEEec
Confidence 987632 1222333333 34676654
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.30 E-value=1.8e-06 Score=67.29 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=36.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC---CcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~ 68 (200)
.+++++|.+|+|||||+|+|+...... ...+..++++.... ..++ .+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCCh
Confidence 589999999999999999998743211 12222333333222 2222 2579999996543
No 386
>KOG0460|consensus
Probab=98.26 E-value=7.9e-06 Score=61.64 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=99.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh---C-------CCCCC--cCCCc-ccce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK---G-------TFRES--YIPTI-EDTY--RQVISCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~---~-------~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~~D~~G~~~~ 68 (200)
+-+.++|.-+|...-|||||..++.. . +|.+- ....- -+.+ ...+..+.......-.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 34568899999999999999877642 1 11110 00000 0111 123333444567788999999988
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC---HHHHHHHHHH
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---AAEGEAEAKM 145 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~ 145 (200)
-.....-....|+.|+|+.++|...-+.-+.++ +.+..+ -..++|.+||.|+.+..+.- +.+..++...
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LArQVG------V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLL--LARQVG------VKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHHHcC------CceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 777666777789999999999976555544333 333332 25688999999998543322 2233444455
Q ss_pred hC-----CcEEEec---ccCCCc-------HHHHHHHHHHHHh
Q psy8700 146 WG-----CHFMETS---AKTNHN-------VKELFAELLNLEK 173 (200)
Q Consensus 146 ~~-----~~~~~vS---a~~~~~-------i~~~~~~i~~~~~ 173 (200)
+| +|++.-| |+.|.+ |.++++.+-+++.
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 54 4788766 455532 5666666555553
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=7.6e-06 Score=61.17 Aligned_cols=97 Identities=21% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK 144 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 144 (200)
++.+.+.+..+.+.|-+++|+++.+|+- ...+..++-.... ..+..+|++||+|+.+..+...........
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--------~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~ 138 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--------GGIEPVIVLNKIDLLDDEEAAVKELLREYE 138 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--------cCCcEEEEEEccccCcchHHHHHHHHHHHH
Confidence 3445566666777888888889888874 4444444433333 236778889999998766544334455666
Q ss_pred HhCCcEEEecccCCCcHHHHHHHHHH
Q psy8700 145 MWGCHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 145 ~~~~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
..|++++.+|++++.++.++.+.+..
T Consensus 139 ~~gy~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 139 DIGYPVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred hCCeeEEEecCcCcccHHHHHHHhcC
Confidence 78999999999999999999886643
No 388
>KOG1424|consensus
Probab=98.25 E-value=1.6e-06 Score=68.45 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=38.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~ 65 (200)
.+.|++||.|||||||+||+|.+.+- ..++.+++.++ .++.+.. .+.++|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk--VsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK--VSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce--eeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 58999999999999999999999774 23333333332 2333333 4889999994
No 389
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.25 E-value=6.2e-06 Score=62.34 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=62.6
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC 148 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 148 (200)
.......+..+|++++|+|+.++.+... .. +.... .+.|+++|+||+|+.+... ......+....+.
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~---l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~ 81 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSEN--PM---IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGI 81 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCC--hh---HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCC
Confidence 3455667889999999999987654332 11 11111 2379999999999854321 1111222223356
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+++.+|++.+.|+.++.+.+.+.+.+
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 78999999999999999999887754
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.24 E-value=1.9e-05 Score=56.21 Aligned_cols=90 Identities=22% Similarity=0.070 Sum_probs=50.4
Q ss_pred EEEEEEeCCCCCCChhhHhh----ccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 55 CTLQITDTTGSHQFPAMQRL----SIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~----~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
+.+.++||+|...+...... ++. ..+-+++|++++.... .+.... ...... .+-=+++||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~-~~~~~~--------~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQAL-AFYEAF--------GIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHH-HHHHHS--------STCEEEEESTTS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHH-HHhhcc--------cCceEEEEeecC
Confidence 57999999997654422111 111 4678899999886542 322222 222222 133677999995
Q ss_pred CcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
...- -.........+.|+-.++ +|.++
T Consensus 153 t~~~----G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 153 TARL----GALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp SSTT----HHHHHHHHHHTSEEEEEE--SSSST
T ss_pred CCCc----ccceeHHHHhCCCeEEEE--CCCCh
Confidence 3321 123445556777777776 45544
No 391
>PRK13796 GTPase YqeH; Provisional
Probab=98.23 E-value=2.7e-06 Score=66.42 Aligned_cols=58 Identities=28% Similarity=0.284 Sum_probs=36.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC---CcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~ 67 (200)
..+++++|.+|||||||+|+|....... ...+..++++.... .+++. ..++||||...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 3579999999999999999998643211 11223333443322 23333 47999999753
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=3e-05 Score=62.55 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=69.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC------------CCcCCCc-------ccceeEEEEe-C-----------CcEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFR------------ESYIPTI-------EDTYRQVISC-N-----------KNIC 55 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~------------~~~~~~~-------~~~~~~~~~~-~-----------~~~~ 55 (200)
.-.|+|+|+.|+||||++..|...-.. ..+.... .......+.. . -..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 357899999999999999888642100 0111000 0000000110 0 1236
Q ss_pred EEEEEeCCCCCCChhhHhh---ccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 56 TLQITDTTGSHQFPAMQRL---SIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
.+.|+||+|.......... .+. .....++|++.+.. ...+......+.. ..+.-+|+||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~---------~~~~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH---------AKPQGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh---------hCCeEEEEecCcCcc
Confidence 8999999996543221110 011 12345666666532 3333333322222 136679999999632
Q ss_pred ccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 131 NREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
.. -.........+.++.+++ +|..+
T Consensus 499 --~l--G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 --RF--GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred --ch--hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 11 123344446677777776 45555
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=3.3e-06 Score=63.03 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=33.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCC------CCCcCCCc-ccceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTF------RESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
..+++|.+|+|||||+|+|....- +......- ..+....+.+.+. -.++||||..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCc
Confidence 568999999999999999986321 11111111 1222233344322 36899999665
No 394
>PRK13796 GTPase YqeH; Provisional
Probab=98.21 E-value=9.9e-06 Score=63.26 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=59.1
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH----HHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG----EAEA 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~ 143 (200)
+.......-...+.+++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+..... ..... ..+.
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~------~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~ 126 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV------GNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh------CCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHH
Confidence 3444333333344889999988743 22333344433 2478999999999965321 11121 2223
Q ss_pred HHhCC---cEEEecccCCCcHHHHHHHHHHHH
Q psy8700 144 KMWGC---HFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 144 ~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
+..++ .++.+||+++.|++++++.|.+..
T Consensus 127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 127 KELGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred HhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 44555 589999999999999999997753
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.20 E-value=2.1e-06 Score=64.82 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
-.++++|++|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998754
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.20 E-value=2.1e-05 Score=61.04 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=70.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc----ccceeE---------------EEEe------------CCcEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----EDTYRQ---------------VISC------------NKNIC 55 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~---------------~~~~------------~~~~~ 55 (200)
.--|+++||.||||||-+.+|............. .++|+. .+.+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5678999999999999988875422200000000 011111 0000 01345
Q ss_pred EEEEEeCCCCCCChh----hHhhcccc--CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 56 TLQITDTTGSHQFPA----MQRLSISK--GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~----~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.+.++||.|...+.. ....++.. ..-+.+|++++... .++... +..... . ..-=+++||.|..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei---~~~f~~----~--~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEI---IKQFSL----F--PIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHH---HHHhcc----C--CcceeEEEccccc
Confidence 899999999765543 22233332 24455677776542 233332 222221 1 1224789999943
Q ss_pred cccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
. ..- .........+.|+-.++ +|.+|.+
T Consensus 352 ~--s~G--~~~s~~~e~~~PV~YvT--~GQ~VPe 379 (407)
T COG1419 352 T--SLG--NLFSLMYETRLPVSYVT--NGQRVPE 379 (407)
T ss_pred C--chh--HHHHHHHHhCCCeEEEe--CCCCCCc
Confidence 2 211 22333445566666665 4555443
No 397
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.19 E-value=7e-05 Score=57.96 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=26.6
Q ss_pred EEEEEEeCCCCCCChhhHhhcc-------ccCCEEEEEeeCCC
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSI-------SKGHAFILVYSCTS 90 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~-------~~~~~~i~v~d~~~ 90 (200)
....++++.|......+...+. -..++++.|+|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 4678899999887766666542 13588999999864
No 398
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=1.6e-05 Score=69.49 Aligned_cols=153 Identities=22% Similarity=0.182 Sum_probs=80.0
Q ss_pred EEEECCCCCCHHHHHHHHhhCC-CC----CCcCCCcccceeEEEEeCCcEEEEEEEeCCC----CC----CChhhHhhc-
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGT-FR----ESYIPTIEDTYRQVISCNKNICTLQITDTTG----SH----QFPAMQRLS- 75 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----~~----~~~~~~~~~- 75 (200)
.+|+|++|+||||++..--... +. ....... ++......+.+ .-.++||.| ++ .....+..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~-gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGP-GTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCC-CCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 4799999999999876432111 00 0111111 11111222222 478899999 21 223333332
Q ss_pred --------cccCCEEEEEeeCCC-----hh----HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-ccCH-
Q psy8700 76 --------ISKGHAFILVYSCTS-----RQ----SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-EVSA- 136 (200)
Q Consensus 76 --------~~~~~~~i~v~d~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~- 136 (200)
.+..+++|+.+|+.+ +. ....++..+.++.+.. .-..|+.|++||.|+..-- +.-.
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-----~~~~PVYl~lTk~Dll~GF~efF~~ 278 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-----HARLPVYLVLTKADLLPGFEEFFGS 278 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-----ccCCceEEEEecccccccHHHHHhc
Confidence 334799999999753 11 1333444455555555 3668999999999987522 1111
Q ss_pred HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 137 AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 137 ~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.......+.+|. .|..++....+....++.-.+.+
T Consensus 279 l~~~~r~qvwG~-tf~~~~~~~~~~~~~~~~e~~~L 313 (1188)
T COG3523 279 LNKEEREQVWGV-TFPLDARRNANLAAELEQEFRLL 313 (1188)
T ss_pred cCHHHHhhhcee-ccccccccccchHHHHHHHHHHH
Confidence 111223334443 45556655545444444433333
No 399
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.16 E-value=8.7e-05 Score=52.08 Aligned_cols=86 Identities=26% Similarity=0.220 Sum_probs=57.1
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
..+.+.++|||+... ......+..+|.+++++..+. .+......++..+... ..|+.+|+|+.|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~--------~~~~~vV~N~~~~~~~- 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF--------GIPVGVVINKYDLNDE- 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc--------CCCEEEEEeCCCCCcc-
Confidence 457899999997543 233456678999999988763 3566666666655542 2578899999996432
Q ss_pred ccCHHHHHHHHHHhCCcEEE
Q psy8700 133 EVSAAEGEAEAKMWGCHFME 152 (200)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~ 152 (200)
...+..++....+++++.
T Consensus 159 --~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 159 --IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred --hHHHHHHHHHHcCCCeEE
Confidence 223445556666776653
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=3.5e-05 Score=60.86 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=71.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-----C-------CCcCCCc-------ccceeEEEE------------eCCcEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTF-----R-------ESYIPTI-------EDTYRQVIS------------CNKNIC 55 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~-----~-------~~~~~~~-------~~~~~~~~~------------~~~~~~ 55 (200)
.-.|+++|+.|+||||++..|.+... . ..+.... .......+. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999998865210 0 0000000 000000000 001223
Q ss_pred EEEEEeCCCCCCChh----hHhhcc--ccCCEEEEEeeCCC-hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 56 TLQITDTTGSHQFPA----MQRLSI--SKGHAFILVYSCTS-RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~----~~~~~~--~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
.+.++||+|...... ....+. ....-.++|++++. .+.+.++ ...+. .-.+-=+++||.|.
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~---------~~~~~~~I~TKlDE 338 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQ---------GHGIHGCIITKVDE 338 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhc---------CCCCCEEEEEeeeC
Confidence 788999999665322 111121 12346778888874 3333332 21111 11244688999995
Q ss_pred CcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
... .- .........+.|+.+++ +|.++
T Consensus 339 t~~--~G--~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 339 AAS--LG--IALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred CCC--cc--HHHHHHHHhCCCEEEEE--CCCCc
Confidence 332 11 23444556677877776 45555
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=6.9e-06 Score=63.87 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=73.3
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhC----CCC------CCcCCCccccee-------EEEE-e-------------C-Cc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKG----TFR------ESYIPTIEDTYR-------QVIS-C-------------N-KN 53 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~----~~~------~~~~~~~~~~~~-------~~~~-~-------------~-~~ 53 (200)
....|+++|++||||||++..|... ... ..+....-.... ..+. . . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999998531 100 011000000000 0000 0 0 01
Q ss_pred EEEEEEEeCCCCCCChhh----Hhhcc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 54 ICTLQITDTTGSHQFPAM----QRLSI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+.+.|+||+|....... ....+ ...+.+++|+|++-.. +.+......+.. -..-=+++||.|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---------~~idglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---------IHIDGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---------CCCCEEEEEccc
Confidence 358999999996543221 11222 1346778888875331 222222222221 123468899999
Q ss_pred CCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
... ..-. ........+.|+..++ .|.++.+=+
T Consensus 389 ET~--k~G~--iLni~~~~~lPIsyit--~GQ~VPeDI 420 (436)
T PRK11889 389 ETA--SSGE--LLKIPAVSSAPIVLMT--DGQDVKKNI 420 (436)
T ss_pred CCC--CccH--HHHHHHHHCcCEEEEe--CCCCCCcch
Confidence 643 2222 2344556777777776 455554433
No 402
>PRK00098 GTPase RsgA; Reviewed
Probab=98.12 E-value=7.7e-06 Score=62.16 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
-.++++|++|+|||||+|+|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998754
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.11 E-value=1.6e-05 Score=63.15 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh----CCCC------CCcCCCc-----------ccceeEE-EEeC-----------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK----GTFR------ESYIPTI-----------EDTYRQV-ISCN----------- 51 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~----~~~~------~~~~~~~-----------~~~~~~~-~~~~----------- 51 (200)
..+..|+++|++|+||||++..|.. .... ..+.+.. +..+... ...+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3467899999999999999887742 1110 1111110 0000000 0000
Q ss_pred CcEEEEEEEeCCCCCCChhhH------hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 52 KNICTLQITDTTGSHQFPAMQ------RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
-....+.++||+|......-. ......++.+++|+|++... +.+ ........ .-...-+|+||
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av----~~a~~F~~-----~l~i~gvIlTK 241 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK----NQAKAFHE-----AVGIGGIIITK 241 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH----HHHHHHHh-----cCCCCEEEEec
Confidence 012378999999966532211 11233578899999987642 111 11222221 00134688999
Q ss_pred CCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 126 CDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
.|... ..- .........+.|+.+++
T Consensus 242 lD~~a--~~G--~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 242 LDGTA--KGG--GALSAVAETGAPIKFIG 266 (437)
T ss_pred ccCCC--ccc--HHHHHHHHHCcCEEEEe
Confidence 99532 111 12334445677766665
No 404
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=9.8e-05 Score=62.24 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=70.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-C-----------CCcCCCccc-------ceeEEEE-e-----------CCcEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTF-R-----------ESYIPTIED-------TYRQVIS-C-----------NKNICT 56 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~-~-----------~~~~~~~~~-------~~~~~~~-~-----------~~~~~~ 56 (200)
--|+|+|+.|+||||++..|...-. . ..+.....+ .....+. . .-....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4689999999999999999874220 0 001100000 0000000 0 012347
Q ss_pred EEEEeCCCCCCChhhH----hhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 57 LQITDTTGSHQFPAMQ----RLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 57 ~~~~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+.|+||+|........ ... ....+-.++|+|.+.. .+.+......+.... ...+-=+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~------~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA------GEDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc------cCCCCEEEEeccCCCC
Confidence 8999999954322111 111 2234667888888743 222222222222211 0013468899999543
Q ss_pred ccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 131 NREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
. .-. ........+.|+.+++ +|.+|
T Consensus 338 ~--~G~--iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 338 H--LGP--ALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred C--ccH--HHHHHHHHCCCeEEEe--cCCCC
Confidence 2 121 2334456678877776 45555
No 405
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=0.00029 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998653
No 406
>KOG2484|consensus
Probab=97.97 E-value=9.3e-06 Score=62.36 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=39.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (200)
.+.++++|+|.|++||||+||+|....... ...|+.... -..+..+.. +.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s-mqeV~Ldk~---i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS-MQEVKLDKK---IRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh-hhheeccCC---ceeccCCce
Confidence 457999999999999999999999876532 222222221 224444444 899999993
No 407
>KOG0467|consensus
Probab=97.96 E-value=3.9e-05 Score=63.47 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--CC------CcCCCcc-ccee-EEE-----EeCCcEEEEEEEeCCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RE------SYIPTIE-DTYR-QVI-----SCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~------~~~~~~~-~~~~-~~~-----~~~~~~~~~~~~D~~G~~~~ 68 (200)
..+.-.|.++....-|||||+.+|+..+- .. .+..+.+ +..+ .++ ...-+.+.+.++|+||+.++
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 34456788999999999999999975432 11 1111111 1111 111 11225578999999999999
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+.......=+|+.++.+|+.++-..+...-+.+.. .....+++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~---------~~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAW---------IEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHH---------HccCceEEEEehhh
Confidence 999888888899999999988765444432222111 13467899999999
No 408
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.96 E-value=0.00024 Score=56.65 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCCCCh----hhHhhccc---cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 55 CTLQITDTTGSHQFP----AMQRLSIS---KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
+.+.++||+|..... .....++. ...-+++|++.+-. ...+...+..+.. . .+--+++||.|
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~-------~--~~~~vI~TKlD 368 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR-------L--PLDGLIFTKLD 368 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC-------C--CCCEEEEeccc
Confidence 588999999965432 12222333 23466777777543 2232232222221 0 12368899999
Q ss_pred CCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
.... .- .........+.|+.+++ +|.++
T Consensus 369 et~~--~G--~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 369 ETSS--LG--SILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred cccc--cc--HHHHHHHHHCCCEEEEe--CCCCC
Confidence 6332 11 24455566788887777 45554
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.95 E-value=3.8e-05 Score=60.95 Aligned_cols=87 Identities=16% Similarity=0.063 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCCCChh-hHhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 54 ICTLQITDTTGSHQFPA-MQRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+.+.++||+|...... +... ..-..+.+++|+|..... ........+.... ...=+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--------~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--------GLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--------CCCEEEEeCcc
Confidence 35799999999543322 1111 122468889999987543 2222223333222 13467899999
Q ss_pred CCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 128 ETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
..... - .........+.|+.+++.
T Consensus 251 ~~~~~--G--~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 251 GDARG--G--AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred Ccccc--c--HHHHHHHHHCcCEEEEeC
Confidence 53211 1 144455567777776653
No 410
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.93 E-value=5.7e-05 Score=41.89 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCEEEEEeeCCC--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 79 GHAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 79 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.++++|++|.+. +.+++....++..+.... .+.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F------~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF------PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT------TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeccC
Confidence 688999999985 556777777777777766 5689999999998
No 411
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.92 E-value=0.00023 Score=49.62 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=43.7
Q ss_pred EEEEEEEeCCCCCCChh-h---Hhhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 54 ICTLQITDTTGSHQFPA-M---QRLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
...+.++|++|...... . ...+ ....+.+++|++...... .. .....+.+.. . ..-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~------~--~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL------G--ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC------C--CCEEEEECCc
Confidence 34688899999643211 1 1111 124899999999865432 22 2222232222 1 3567889999
Q ss_pred CCcccccCHHHHHHHHHHhCCcEE
Q psy8700 128 ETENREVSAAEGEAEAKMWGCHFM 151 (200)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
...... . ........+.|+-
T Consensus 151 ~~~~~g--~--~~~~~~~~~~p~~ 170 (173)
T cd03115 151 GDARGG--A--ALSIRAVTGKPIK 170 (173)
T ss_pred CCCCcc--h--hhhhHHHHCcCeE
Confidence 654321 1 1224445555544
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.92 E-value=0.00011 Score=59.13 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
--++|+|+.||||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999864
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.87 E-value=5.3e-05 Score=60.18 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=46.2
Q ss_pred EEEEEEeCCCCCCChh-hHhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 55 CTLQITDTTGSHQFPA-MQRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
+.+.++||+|...... +... .....+.+++|+|..... +.......+.... ...-+|+||.|.
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--------~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--------GLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--------CCCEEEEeCccC
Confidence 5799999999553221 1111 112467789999976542 2222222222211 134678899995
Q ss_pred CcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 129 TENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
...- - .........+.|+.+++.
T Consensus 253 ~~rg--G--~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 253 DARG--G--AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred cccc--c--HHHHHHHHHCcCEEEEeC
Confidence 3211 1 134445566777766653
No 414
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00011 Score=57.17 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCCCChhhH----hhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 54 ICTLQITDTTGSHQFPAMQ----RLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+.+.++||+|........ ..+.. ..+.+++|++... ...++... +.... .-.+--+++||.|
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i---~~~f~------~l~i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTI---LPKLA------EIPIDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHH---HHhcC------cCCCCEEEEEccc
Confidence 3689999999975433211 11222 3356666766532 22222222 22211 1124478899999
Q ss_pred CCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
... ..- .........+.|+..++ .|.++.+
T Consensus 354 ET~--~~G--~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 354 ETT--RIG--DLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred CCC--Ccc--HHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 532 222 23444556777877776 4555444
No 415
>KOG1534|consensus
Probab=97.85 E-value=5.2e-05 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+-++++||.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46689999999999999988853
No 416
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.0011 Score=52.21 Aligned_cols=139 Identities=16% Similarity=0.149 Sum_probs=72.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--------CC------CCcCCC-----------cccceeEEEE--------eCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGT--------FR------ESYIPT-----------IEDTYRQVIS--------CNK 52 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~--------~~------~~~~~~-----------~~~~~~~~~~--------~~~ 52 (200)
.+..|+++|++|+||||.+..|...- .. ..+... .+........ -.-
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 34679999999999999988875310 00 111100 0000000000 001
Q ss_pred cEEEEEEEeCCCCCCChh----hHhhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 53 NICTLQITDTTGSHQFPA----MQRLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~----~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
..+.+.++||+|...... ....++.. ..-.++|+|++... ..+...+ .... .-.+-=+++||
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~---~~~~------~~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIF---HQFS------PFSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHH---HHhc------CCCCCEEEEEe
Confidence 346899999999654321 11223222 23578899988652 2333222 2222 11245788999
Q ss_pred CCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
.|... ..-. ........+.|+..++ .|.++
T Consensus 322 lDet~--~~G~--~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 322 LDETT--CVGN--LISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ccCCC--cchH--HHHHHHHHCCCEEEEe--CCCCC
Confidence 99533 2111 2334456677777776 55666
No 417
>KOG0465|consensus
Probab=97.83 E-value=2.9e-05 Score=62.77 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=75.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC------------------cccceeEEEEeCCcEEEEEEEeCCCCCCCh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT------------------IEDTYRQVISCNKNICTLQITDTTGSHQFP 69 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (200)
-.|.+.-.--+||||+.++++...-....... +......+. +.-..+.+.++||||+-.+.
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~-~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATY-FTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceee-eeeccceeEEecCCCceeEE
Confidence 35677777889999999998642211100000 000111111 11125689999999998887
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV 134 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 134 (200)
--....++-.|+.++|++...+-.-+. ...|..+.++. .|.+..+||+|.......
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~~ry~--------vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQMKRYN--------VPRICFINKMDRMGASPF 174 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhh-HHHHHHHHhcC--------CCeEEEEehhhhcCCChH
Confidence 777777778899999998876643333 44455555544 799999999998765543
No 418
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.81 E-value=7.1e-05 Score=51.98 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=63.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeC-CCC---------------CCChh--
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT-TGS---------------HQFPA-- 70 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~G~---------------~~~~~-- 70 (200)
+|.+.|+||+||||++++++..-- .. .-...+++...+.-++...-+.+.|. .|. ..|.-
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~-~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KK-GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HT-CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-cc-CCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 689999999999999999875211 00 11223333333334444444555555 221 11110
Q ss_pred -----hHhhcc----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC-CCCcccccCHHHHH
Q psy8700 71 -----MQRLSI----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC-DETENREVSAAEGE 140 (200)
Q Consensus 71 -----~~~~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 140 (200)
.....+ ..++ ++++|=-.+..+ ....+...+..... .+.|++.++.+. +. ....
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~-----s~~~vi~vv~~~~~~--------~~l~ 142 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLD-----SNKPVIGVVHKRSDN--------PFLE 142 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHC-----TTSEEEEE--SS--S--------CCHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHc-----CCCcEEEEEecCCCc--------HHHH
Confidence 111111 2334 666662221111 12334444555552 557888888776 31 1134
Q ss_pred HHHHHhCCcEEEecccCCCcH
Q psy8700 141 AEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 141 ~~~~~~~~~~~~vSa~~~~~i 161 (200)
......+..+++++..+.+.+
T Consensus 143 ~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 143 EIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp HHHTTTTSEEEE--TTTCCCH
T ss_pred HHHhCCCcEEEEeChhHHhhH
Confidence 445556788888877655544
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.00034 Score=52.28 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=50.4
Q ss_pred EEEEEEEeCCCCCCCh-hhHh---hcc--ccCCEEEEEeeCCC-hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700 54 ICTLQITDTTGSHQFP-AMQR---LSI--SKGHAFILVYSCTS-RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~-~~~~---~~~--~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 126 (200)
.+.+.++||+|..... .+.. .++ ...+.+++|++++. ...... +...+ . .-.+--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~---~~~~f---~------~~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE---IITNF---K------DIHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH---HHHHh---C------CCCCCEEEEEee
Confidence 4689999999966432 1111 121 23467888998763 322222 22222 1 113457899999
Q ss_pred CCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 127 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
|.... .-. ........+.|+..++ +|+++.+
T Consensus 222 Det~~--~G~--~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 222 DETAS--SGE--LLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred cCCCC--ccH--HHHHHHHHCcCEEEEe--CCCCCCc
Confidence 96432 222 2344456777877776 4555443
No 420
>PRK08118 topology modulation protein; Reviewed
Probab=97.77 E-value=2.4e-05 Score=54.32 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
||+|+|++|||||||.+.|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 421
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.77 E-value=2.3e-05 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999773
No 422
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.76 E-value=2.5e-05 Score=54.68 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
+|+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 423
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.74 E-value=0.004 Score=42.90 Aligned_cols=141 Identities=9% Similarity=0.105 Sum_probs=97.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEe-CCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD-TTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~G~~~~~~~~~~~~~~~~~~ 82 (200)
..+...|+++|.-+.++..|..++..... . +. .++++-- .|=..+... .-.+.|.+
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~--------~~---------l~Vh~a~sLPLp~e~~~----lRprIDlI 68 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDK--E--------FK---------LKVHLAKSLPLPSENNN----LRPRIDLI 68 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhcc--c--------ee---------EEEEEeccCCCcccccC----CCceeEEE
Confidence 34578999999999999999999986221 0 11 1111100 000011111 12267999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
+|++|.....+++..+.-+..+.... .-..+.++.+-....+...+...+..+++..+.+|++.+.-...++..
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~f------flGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSF------FLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhh------hccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 99999999999999888776665544 123456666666655666677788899999999999999988888888
Q ss_pred HHHHHHHHHHh
Q psy8700 163 ELFAELLNLEK 173 (200)
Q Consensus 163 ~~~~~i~~~~~ 173 (200)
.+-+.+.+.++
T Consensus 143 ~lAqRLL~~lq 153 (176)
T PF11111_consen 143 SLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 424
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.72 E-value=0.00048 Score=49.70 Aligned_cols=62 Identities=32% Similarity=0.332 Sum_probs=37.3
Q ss_pred EEEEEeC-CCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 56 TLQITDT-TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 56 ~~~~~D~-~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
.+.++|| +|.+.+ .+...+++|.++.|+|.+-. ++...........+.. -.++.+|+||+|-
T Consensus 135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg-------~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG-------IKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC-------CceEEEEEeeccc
Confidence 4555666 343332 23355678999999987643 4555444333232222 2689999999995
No 425
>PRK07261 topology modulation protein; Provisional
Probab=97.70 E-value=3.4e-05 Score=53.78 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+++|++|||||||.+.|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 426
>KOG2485|consensus
Probab=97.70 E-value=9.2e-05 Score=55.38 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC---CCcCCCcccceeE---EEEeCCcEEEEEEEeCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQ---VISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~D~~G~~~ 67 (200)
...++.++|+|-||+|||||+|++...... .......++.++. .+.+. ..-.+.+.||||.-.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGILV 208 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCcCC
Confidence 457899999999999999999998643321 1222222233321 11211 112588999999543
No 427
>KOG3859|consensus
Probab=97.69 E-value=0.00016 Score=53.38 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=68.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccce----eEEEEeCCcEEEEEEEeCCCCC-------CChh----
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTY----RQVISCNKNICTLQITDTTGSH-------QFPA---- 70 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G~~-------~~~~---- 70 (200)
.++|+.+|..|-|||||+..|.+-++... ..++.+..- .+...-.+..+++.++||.|.- +|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 48999999999999999999998776432 222222111 1122224455788999999921 2211
Q ss_pred ---hHhhcc---------------ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 71 ---MQRLSI---------------SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 71 ---~~~~~~---------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
.-..|+ .+.+++++.+..+.. ++..+...- +.... .+..+|=++-|+|-+...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvt--mk~Ld------skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVT--MKKLD------SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHH--HHHHh------hhhhhHHHHHHhhhhhHH
Confidence 111111 135778888876653 455544332 22222 334566667888876654
Q ss_pred cc
Q psy8700 133 EV 134 (200)
Q Consensus 133 ~~ 134 (200)
+.
T Consensus 193 eL 194 (406)
T KOG3859|consen 193 EL 194 (406)
T ss_pred HH
Confidence 43
No 428
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.68 E-value=0.00062 Score=42.20 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=44.2
Q ss_pred EEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-HhhccccCCEEEEEeeC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM-QRLSISKGHAFILVYSC 88 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~ 88 (200)
+++.|.+|+||||+...+...--... .....++ .+.++|+++....... .......++.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999888765221100 0111112 7899999986543221 24566678999988877
Q ss_pred CCh
Q psy8700 89 TSR 91 (200)
Q Consensus 89 ~~~ 91 (200)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 654
No 429
>KOG0464|consensus
Probab=97.68 E-value=1.7e-05 Score=61.54 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=79.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--------CCCCcC-C-------Ccc-cceeEEEEeCCcEEEEEEEeCCCCCCCh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT--------FRESYI-P-------TIE-DTYRQVISCNKNICTLQITDTTGSHQFP 69 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~--------~~~~~~-~-------~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (200)
.-+|.++....+||||...|++.-. ...... . ..+ ......+.++=+..++.++||||+-.++
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 3568899999999999999986411 100000 0 001 1112344555566799999999999998
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
-....+++-.|+++.|||.+.+-.-+.+.-|.. . +..++|-...+||+|....
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq-----a----dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----A----DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----c----cccCCchhhhhhhhhhhhh
Confidence 888888888999999999998765555544432 1 1245788999999997653
No 430
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.66 E-value=0.0014 Score=44.08 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=59.5
Q ss_pred EECCCCCCHHHHHHHHhh----CCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 12 VFGAGGVGKSSLVLRFVK----GTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 12 ~~G~~~~GKSsli~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
.-|.+|+|||++.-.+.. .......... +... ..-.+.+.++|+|+.. .......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~--D~~~-----~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDA--DLGL-----ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEEC--CCCC-----CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 456799999998665532 1110000000 0000 0111689999999854 3334567888999999988
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
.+ ..++......+..+.+.. ...++.+|+|+.+.
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~------~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQL------RVLNFRVVVNRAES 109 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhc------CCCCEEEEEeCCCC
Confidence 75 445555555555554432 34577899999974
No 431
>KOG2743|consensus
Probab=97.64 E-value=6.9e-05 Score=55.75 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCCCCChhhHhhcccc--------CCEEEEEeeCCChhH-HHH--HHHHH-HHHHHHhCCCCCCCCCcEEE
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISK--------GHAFILVYSCTSRQS-LEE--LRPIW-EVIRETKGGANELASIPIML 121 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~--------~~~~i~v~d~~~~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~p~iv 121 (200)
.+...+.+|.|......+...++.. .|+++-|+|+....- +.. ....+ +...+.. ..=-|
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA--------~AD~I 216 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA--------LADRI 216 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh--------hhhee
Confidence 3577899999988877777776654 489999999754211 100 01111 2222222 12268
Q ss_pred EeeCCCCCccccc
Q psy8700 122 VGNKCDETENREV 134 (200)
Q Consensus 122 v~nK~Dl~~~~~~ 134 (200)
++||.|+.+..+.
T Consensus 217 I~NKtDli~~e~~ 229 (391)
T KOG2743|consen 217 IMNKTDLVSEEEV 229 (391)
T ss_pred eeccccccCHHHH
Confidence 8999999886543
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=4.4e-05 Score=51.38 Aligned_cols=20 Identities=40% Similarity=0.727 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
|+++|+||||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 433
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00024 Score=55.99 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=70.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CC----------CCcCCCc-----------ccceeEEE-------EeCCcEEEEE
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT-FR----------ESYIPTI-----------EDTYRQVI-------SCNKNICTLQ 58 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~-~~----------~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~ 58 (200)
.-++++|++||||||++.+|.... .. +.+.... +....... ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886411 00 0000000 00000000 0011345789
Q ss_pred EEeCCCCCCCh-hhH---hhccc-----cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 59 ITDTTGSHQFP-AMQ---RLSIS-----KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 59 ~~D~~G~~~~~-~~~---~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
++||+|..... ... ..++. ...-.++|+|++... ..+....... . .-.+-=+|+||.|..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f---~------~~~~~glIlTKLDEt 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY---E------SLNYRRILLTKLDEA 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh---c------CCCCCEEEEEcccCC
Confidence 99999965322 111 11111 134678888887653 1222222212 1 112457889999953
Q ss_pred cccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
. ..-. ........+.|+..++ .|.++.+
T Consensus 373 ~--~~G~--il~i~~~~~lPI~ylt--~GQ~VPe 400 (432)
T PRK12724 373 D--FLGS--FLELADTYSKSFTYLS--VGQEVPF 400 (432)
T ss_pred C--CccH--HHHHHHHHCCCEEEEe--cCCCCCC
Confidence 2 2222 3344456777877776 4444433
No 434
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.58 E-value=7.8e-05 Score=43.70 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 435
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.57 E-value=0.00021 Score=47.39 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 436
>KOG4273|consensus
Probab=97.57 E-value=0.0012 Score=48.19 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=60.7
Q ss_pred EEEEECCCCC--CHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEE--EEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 9 RVVVFGAGGV--GKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNIC--TLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 9 ki~~~G~~~~--GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
-++++|..|+ ||-+|..+|....+.....++.. ..+-++ ++++.+ .+.+.-.+-.+++.--.........+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 4689999999 99999999987665433222221 111112 122221 2222222222222111122333457889
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC-cEEEEeeCCCC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASI-PIMLVGNKCDE 128 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl 128 (200)
+|||++....+..++.|+.-..- ... -.+.++||.|.
T Consensus 84 mvfdlse~s~l~alqdwl~htdi--------nsfdillcignkvdr 121 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDI--------NSFDILLCIGNKVDR 121 (418)
T ss_pred EEEeccchhhhHHHHhhcccccc--------ccchhheeccccccc
Confidence 99999999999998888732111 111 23456788884
No 437
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.56 E-value=4.8e-05 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=9.8e-05 Score=41.98 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++.|+.|+||||++.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998764
No 439
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.54 E-value=0.00067 Score=51.06 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--------------
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-------------- 67 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------------- 67 (200)
|.+.....++++|++|.|||++++++...... ..+. +...+.|..+++|....
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-----~~d~--------~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-----QSDE--------DAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCC-----CCCC--------CCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 55666678999999999999999999874421 1110 11233555666655221
Q ss_pred ----------ChhhHhhccccCCEEEEEeeCC-C--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 68 ----------FPAMQRLSISKGHAFILVYSCT-S--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 68 ----------~~~~~~~~~~~~~~~i~v~d~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
...+....+.....=++++|=- + .-+....+..++.+..... .-++|+|.+|+.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N----eL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN----ELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh----ccCCCeEEeccH
Confidence 1223334555667777777721 1 1234445666666666654 466899999875
No 440
>KOG2423|consensus
Probab=97.53 E-value=0.00013 Score=56.42 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=50.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--hhHhhccccCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP--AMQRLSISKGH 80 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~~~~~~~ 80 (200)
.-..+.++++|.|++||||+||.|-..+.+.. .+|...-.+.+. .+ ...+-++|+||.--.. +.....+ .
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI-tL---mkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI-TL---MKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH-HH---HhceeEecCCCccCCCCCchHHHHh---h
Confidence 34568899999999999999999988776432 222222222211 11 1257899999943222 2222233 4
Q ss_pred EEEEEeeCCChh
Q psy8700 81 AFILVYSCTSRQ 92 (200)
Q Consensus 81 ~~i~v~d~~~~~ 92 (200)
+++=|=.+.+++
T Consensus 377 GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 GVVRVENVKNPE 388 (572)
T ss_pred ceeeeeecCCHH
Confidence 566666777765
No 441
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.50 E-value=0.00025 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--|++-|+-|||||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.50 E-value=0.00018 Score=51.76 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=22.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
+....-|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 455667889999999999999999754
No 443
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.50 E-value=0.00094 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
.--++++|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998743
No 444
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.49 E-value=0.0049 Score=42.95 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC
Q psy8700 56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS 135 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 135 (200)
.+.++|+|+.... .....+..+|.++++++.+. .++.....++..+.... .....+++|+.|..... .
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~-------~~~~~iv~N~~~~~~~~--~ 131 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG-------IKVVGVIVNRVRPDMVE--G 131 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC-------CceEEEEEeCCcccccc--h
Confidence 6999999985432 34455678999999887654 34555555555555422 23567899999854322 1
Q ss_pred HHHHHHHHHHhCCcEE
Q psy8700 136 AAEGEAEAKMWGCHFM 151 (200)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (200)
......+.+..+.+++
T Consensus 132 ~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 132 GDMVEDIEEILGVPLL 147 (179)
T ss_pred hhHHHHHHHHhCCCEE
Confidence 1122344455666654
No 445
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.49 E-value=0.0025 Score=40.35 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=49.7
Q ss_pred EEEEC-CCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 10 VVVFG-AGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 10 i~~~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
|++.| .+|+||||+...+...-.. ...+ .-.+..+ ..+.+.++|+|+.... .....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~------vl~~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR------VLLIDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc------EEEEeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56777 5799999987776542110 0000 0111112 1268999999996542 333677789999998876
Q ss_pred CChhHHHHHHHHHH
Q psy8700 89 TSRQSLEELRPIWE 102 (200)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (200)
+ ..++.....+.+
T Consensus 72 ~-~~s~~~~~~~~~ 84 (104)
T cd02042 72 S-PLDLDGLEKLLE 84 (104)
T ss_pred C-HHHHHHHHHHHH
Confidence 4 445666655554
No 446
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.48 E-value=0.003 Score=40.29 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=42.6
Q ss_pred EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
.+.++|+|+... ......+..+|.++++++.+ ..+......+...+.+... .+...+.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~----~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDY----SLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCC----CCcCceEEEecC
Confidence 789999998654 33445677889999888654 4466777777766665442 114567777774
No 447
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00011 Score=53.43 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++|++|||||||+|-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999876
No 448
>KOG1970|consensus
Probab=97.44 E-value=0.0014 Score=52.82 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=46.2
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
..+|+|=|+-+....+......+.+..+. .....|+|++++-+-..+.......-...+....++.-+..+.-...
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~----s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T 270 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYV----SIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPT 270 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHH----hcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHH
Confidence 44577777765544444444444444444 24668999999866554332222222222234455555544444444
Q ss_pred cHHHHHHHHHHHH
Q psy8700 160 NVKELFAELLNLE 172 (200)
Q Consensus 160 ~i~~~~~~i~~~~ 172 (200)
-+.+.+..|....
T Consensus 271 ~MKK~L~ric~~e 283 (634)
T KOG1970|consen 271 IMKKFLKRICRIE 283 (634)
T ss_pred HHHHHHHHHHHHh
Confidence 4566666655543
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00012 Score=52.22 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++||+|||||||++.+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 478999999999999998865
No 450
>PRK06217 hypothetical protein; Validated
Probab=97.43 E-value=0.00014 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999763
No 451
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.41 E-value=0.00013 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++||+|||||||+|-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 379999999999999998866
No 452
>PRK10646 ADP-binding protein; Provisional
Probab=97.41 E-value=0.00073 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999763
No 453
>KOG0780|consensus
Probab=97.40 E-value=0.00017 Score=55.59 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=53.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh--------------CCCCCC------------cCCCcccce-eEEE--------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK--------------GTFRES------------YIPTIEDTY-RQVI-------- 48 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~--------------~~~~~~------------~~~~~~~~~-~~~~-------- 48 (200)
+..+--|+++|-.|+||||...+|.. +.|+.. ..|-.+..+ ...+
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 44455689999999999998777642 222110 011111000 0000
Q ss_pred EeCCcEEEEEEEeCCCCCCCh-hhHh-----hccccCCEEEEEeeCCChhHHHHHHH
Q psy8700 49 SCNKNICTLQITDTTGSHQFP-AMQR-----LSISKGHAFILVYSCTSRQSLEELRP 99 (200)
Q Consensus 49 ~~~~~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~ 99 (200)
.+..+.+.+.|+||.|..... ++-. .-.-+.|-+|+|.|++-...-.....
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 123466799999999954321 1111 11224699999999886654444333
No 454
>PRK14530 adenylate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999998864
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.38 E-value=0.00015 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5799999999999999998873
No 456
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.00037 Score=54.64 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh----CCC------CCCcCCCccc-------ceeEEE------------------E
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK----GTF------RESYIPTIED-------TYRQVI------------------S 49 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~----~~~------~~~~~~~~~~-------~~~~~~------------------~ 49 (200)
.++..|+++|-.||||||..-.|.. ... ...|.|...+ .....+ .
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999998777632 111 1122222100 000000 0
Q ss_pred eCCcEEEEEEEeCCCCCCChhhHh------hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700 50 CNKNICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123 (200)
Q Consensus 50 ~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 123 (200)
.....+.+.++||+|........- ...-+.|-+++|+|+.-...-.+... .+.+..+ -.=||+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~---aF~e~l~--------itGvIl 246 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK---AFNEALG--------ITGVIL 246 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH---HHhhhcC--------CceEEE
Confidence 112335899999999554332111 12335789999999876643333333 2333221 225889
Q ss_pred eCCCC
Q psy8700 124 NKCDE 128 (200)
Q Consensus 124 nK~Dl 128 (200)
||.|.
T Consensus 247 TKlDG 251 (451)
T COG0541 247 TKLDG 251 (451)
T ss_pred EcccC
Confidence 99995
No 457
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.37 E-value=0.00018 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999873
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.37 E-value=0.00022 Score=51.34 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+...-|++.|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999976
No 459
>PRK03839 putative kinase; Provisional
Probab=97.36 E-value=0.00019 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+++|+|||||||+.++|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.35 E-value=0.00019 Score=48.13 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 461
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.35 E-value=0.00025 Score=50.11 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
..=|+|+||+|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999998743
No 462
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.35 E-value=0.00021 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=23.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
+.+++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998763
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.34 E-value=0.00018 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.33 E-value=0.0023 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
...|++.|++|||||||+++|+..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4679999999999999999998743
No 465
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00017 Score=47.44 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 466
>PRK13949 shikimate kinase; Provisional
Probab=97.32 E-value=0.00023 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+++|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.32 E-value=0.0002 Score=51.14 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|++.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.31 E-value=0.00029 Score=50.78 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.....|++.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998763
No 469
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.31 E-value=0.0018 Score=50.05 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
...|++.|++|||||||+++|+..-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999998643
No 470
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.31 E-value=0.00032 Score=49.06 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=24.5
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
|+...+..-|++.|++||||||+.+.+..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45556778999999999999999988865
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.31 E-value=0.00021 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999664
No 472
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00021 Score=50.94 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHh
Q psy8700 10 VVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~ 28 (200)
.+++||+|||||||++.|-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4899999999999988773
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00027 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTF 32 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~ 32 (200)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987543
No 474
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00017 Score=50.12 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
..=+++.||+|+||||++++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998755
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.27 E-value=0.00025 Score=49.80 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 476
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.27 E-value=0.00024 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.|+++|++||||||+.+.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999973
No 477
>PRK14531 adenylate kinase; Provisional
Probab=97.26 E-value=0.00032 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..+|+++|+|||||||+...|..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 478
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.26 E-value=0.00027 Score=44.97 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=18.7
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~ 28 (200)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999976
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.25 E-value=0.00028 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|+++|+.|+|||||++.|++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 480
>KOG0469|consensus
Probab=97.25 E-value=0.00042 Score=55.29 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--------CCCcCCCcccc------eeE---EE--------------EeCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--------RESYIPTIEDT------YRQ---VI--------------SCNK 52 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~~------~~~---~~--------------~~~~ 52 (200)
+.+.-++.++....-|||||..+|....- ...+..+..+. .+. .. ..++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 44556778888899999999999864210 01111111000 000 00 1134
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
..+.+.++|.||+-.+.+...+.++-.|+.++|+|.-+.--.+.-.-+.+.+.+. +.-++++||+|-
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---------IkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---------IKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---------ccceEEeehhhH
Confidence 5578999999999999999999999999999999988765444433333333332 344788999994
No 481
>PRK08233 hypothetical protein; Provisional
Probab=97.25 E-value=0.00034 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|++.|++|||||||.++|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688899999999999999975
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.23 E-value=0.00027 Score=51.36 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
|++.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 483
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00036 Score=50.94 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..+|+|+|+|||||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 484
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.21 E-value=0.0012 Score=44.37 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--|++-|+-|||||||++.+...
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHH
Confidence 34789999999999999998753
No 485
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.21 E-value=0.00034 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
=+++++|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3689999999999999998765
No 486
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.00033 Score=53.16 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=75.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh--------------CCCCC---------------CcCC-CcccceeEEEEe---
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK--------------GTFRE---------------SYIP-TIEDTYRQVISC--- 50 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~--------------~~~~~---------------~~~~-~~~~~~~~~~~~--- 50 (200)
+..++-|+++|-.|+||||-+-+|.. +.|+. ..+. ..+.... .+.+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA-aVafDAi 214 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA-AVAFDAI 214 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH-HHHHHHH
Confidence 34588999999999999999888742 11111 0000 0000000 0000
Q ss_pred ---CCcEEEEEEEeCCCCCCChh-------hHhhccccC-----CEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCC
Q psy8700 51 ---NKNICTLQITDTTGSHQFPA-------MQRLSISKG-----HAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANEL 114 (200)
Q Consensus 51 ---~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~-----~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 114 (200)
....+.+.++||+|.-.... ......... +-+++++|++-+. .+.+. ..++....
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~-------- 285 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVG-------- 285 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcC--------
Confidence 12456899999999443221 112223233 3478888987654 34443 33322222
Q ss_pred CCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 115 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
---+++||.|....--. ........+.|+..+- -|++++++
T Consensus 286 ---l~GiIlTKlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~~DL 326 (340)
T COG0552 286 ---LDGIILTKLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGYDDL 326 (340)
T ss_pred ---CceEEEEecccCCCcce----eeeHHHHhCCCEEEEe--CCCChhhc
Confidence 22688999995322111 1233557788888775 34444544
No 487
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.19 E-value=0.00047 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-++++|++|||||||++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 44689999999999999999986
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.0025 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-|++.|++||||||+++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 489
>PRK14532 adenylate kinase; Provisional
Probab=97.18 E-value=0.00038 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 490
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.18 E-value=0.00035 Score=49.18 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
|+++|+|||||||+..+|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999865
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.18 E-value=0.0005 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....+-|++.|++|||||||++.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999876
No 492
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.17 E-value=0.00032 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
+|+++|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 493
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.17 E-value=0.0055 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
=+++.||+||||||.++.|..
T Consensus 47 iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467799999999999988865
No 494
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00033 Score=53.70 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++||+|||||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999976
No 495
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00055 Score=47.76 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.....|++.|++|||||||.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999763
No 496
>PRK02496 adk adenylate kinase; Provisional
Probab=97.15 E-value=0.00045 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+|+++|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 497
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.15 E-value=0.00042 Score=48.51 Aligned_cols=22 Identities=45% Similarity=0.459 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++++|+.|||||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999998853
No 498
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.0005 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998743
No 499
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.14 E-value=0.00036 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.14 E-value=0.0004 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.--|+++|++|||||||++.|.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999774
Done!