Query psy8700
Match_columns 200
No_of_seqs 108 out of 1779
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 17:02:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.2E-40 4.1E-45 239.5 21.1 168 4-176 10-178 (216)
2 2gf0_A GTP-binding protein DI- 100.0 1.8E-37 6.1E-42 220.7 18.7 196 1-200 2-199 (199)
3 4dsu_A GTPase KRAS, isoform 2B 100.0 3.4E-36 1.2E-40 212.3 22.6 188 5-200 2-189 (189)
4 2bov_A RAla, RAS-related prote 100.0 8.8E-36 3E-40 213.0 22.6 169 4-176 11-179 (206)
5 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-34 5.3E-39 206.8 23.0 174 3-181 4-178 (206)
6 3oes_A GTPase rhebl1; small GT 100.0 2.7E-35 9.3E-40 210.0 17.5 168 5-176 22-189 (201)
7 3kkq_A RAS-related protein M-R 100.0 4E-34 1.4E-38 200.9 21.7 167 4-174 15-182 (183)
8 3t5g_A GTP-binding protein RHE 100.0 3.1E-34 1.1E-38 201.1 19.8 170 4-177 3-172 (181)
9 2j0v_A RAC-like GTP-binding pr 100.0 1.9E-34 6.4E-39 207.2 18.9 167 5-177 7-183 (212)
10 2fn4_A P23, RAS-related protei 100.0 8.1E-34 2.8E-38 198.7 21.2 170 3-176 5-174 (181)
11 2erx_A GTP-binding protein DI- 100.0 4.9E-34 1.7E-38 198.2 19.7 168 6-176 2-169 (172)
12 3tkl_A RAS-related protein RAB 100.0 8.2E-34 2.8E-38 201.3 21.2 171 4-179 13-184 (196)
13 1u8z_A RAS-related protein RAL 100.0 1.6E-33 5.6E-38 194.7 22.1 165 6-174 3-167 (168)
14 1c1y_A RAS-related protein RAP 100.0 1.3E-33 4.6E-38 195.1 20.9 164 6-173 2-166 (167)
15 2ew1_A RAS-related protein RAB 100.0 1E-33 3.5E-38 201.9 20.7 167 4-175 23-190 (201)
16 1kao_A RAP2A; GTP-binding prot 100.0 1.7E-33 5.9E-38 194.4 21.1 164 6-173 2-165 (167)
17 3reg_A RHO-like small GTPase; 100.0 1.3E-33 4.5E-38 200.1 20.6 168 3-176 19-190 (194)
18 2a9k_A RAS-related protein RAL 100.0 3E-33 1E-37 196.7 21.7 168 4-175 15-182 (187)
19 2nzj_A GTP-binding protein REM 100.0 2.6E-33 8.8E-38 195.2 21.0 167 5-175 2-170 (175)
20 3c5c_A RAS-like protein 12; GD 100.0 1.9E-33 6.5E-38 198.3 20.4 168 4-174 18-186 (187)
21 1z08_A RAS-related protein RAB 100.0 2.1E-33 7.2E-38 194.8 20.2 166 4-174 3-169 (170)
22 3q72_A GTP-binding protein RAD 100.0 1.3E-33 4.6E-38 195.1 19.1 165 6-175 1-165 (166)
23 3q3j_B RHO-related GTP-binding 100.0 1.1E-33 3.7E-38 203.7 19.0 168 4-177 24-206 (214)
24 3tw8_B RAS-related protein RAB 100.0 1.9E-33 6.6E-38 196.8 19.5 169 3-177 5-174 (181)
25 2hup_A RAS-related protein RAB 100.0 2.2E-33 7.4E-38 200.2 19.8 167 5-176 27-195 (201)
26 2fu5_C RAS-related protein RAB 100.0 5.6E-34 1.9E-38 200.1 16.2 168 4-176 5-173 (183)
27 2g6b_A RAS-related protein RAB 100.0 1.1E-32 3.8E-37 192.9 22.4 168 4-176 7-176 (180)
28 2gf9_A RAS-related protein RAB 100.0 8.2E-33 2.8E-37 195.3 21.9 166 5-175 20-186 (189)
29 2atv_A RERG, RAS-like estrogen 100.0 6.3E-33 2.2E-37 197.0 21.4 167 4-175 25-192 (196)
30 1wms_A RAB-9, RAB9, RAS-relate 100.0 1E-32 3.4E-37 192.6 21.9 173 1-175 1-175 (177)
31 1z0f_A RAB14, member RAS oncog 100.0 7.1E-33 2.4E-37 193.5 20.9 166 4-174 12-178 (179)
32 3cbq_A GTP-binding protein REM 100.0 5.1E-33 1.7E-37 197.4 20.1 169 4-176 20-190 (195)
33 2a5j_A RAS-related protein RAB 100.0 4.2E-33 1.4E-37 197.1 19.7 167 4-175 18-185 (191)
34 3ihw_A Centg3; RAS, centaurin, 100.0 5.3E-33 1.8E-37 195.6 20.0 164 3-176 16-182 (184)
35 3q85_A GTP-binding protein REM 100.0 5.8E-33 2E-37 192.4 19.7 165 7-175 2-168 (169)
36 2efe_B Small GTP-binding prote 100.0 8.5E-33 2.9E-37 193.6 20.7 167 4-175 9-176 (181)
37 2bme_A RAB4A, RAS-related prot 100.0 5.1E-33 1.8E-37 195.6 19.6 168 4-176 7-175 (186)
38 1z2a_A RAS-related protein RAB 100.0 5.6E-33 1.9E-37 192.2 19.4 164 5-174 3-167 (168)
39 2q3h_A RAS homolog gene family 100.0 6.8E-33 2.3E-37 197.5 20.1 166 4-175 17-196 (201)
40 1r2q_A RAS-related protein RAB 100.0 5.4E-33 1.8E-37 192.5 19.0 164 5-173 4-168 (170)
41 1ek0_A Protein (GTP-binding pr 100.0 6.5E-33 2.2E-37 192.1 19.2 162 7-173 3-168 (170)
42 2iwr_A Centaurin gamma 1; ANK 100.0 2E-32 6.9E-37 191.4 21.3 165 5-177 5-172 (178)
43 2hxs_A RAB-26, RAS-related pro 100.0 5.3E-33 1.8E-37 194.2 18.2 171 3-176 2-175 (178)
44 2atx_A Small GTP binding prote 100.0 2E-32 7E-37 194.0 21.4 162 6-173 17-192 (194)
45 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-32 4.4E-37 190.7 19.9 164 5-173 4-168 (170)
46 1vg8_A RAS-related protein RAB 100.0 1.1E-32 3.9E-37 197.1 20.0 175 4-180 5-181 (207)
47 2y8e_A RAB-protein 6, GH09086P 100.0 7.6E-33 2.6E-37 193.4 18.6 165 5-174 12-177 (179)
48 1zbd_A Rabphilin-3A; G protein 100.0 2E-32 6.9E-37 195.3 21.1 166 5-175 6-172 (203)
49 2oil_A CATX-8, RAS-related pro 100.0 1.5E-32 5.1E-37 194.5 20.1 167 4-175 22-189 (193)
50 1m7b_A RND3/RHOE small GTP-bin 100.0 6.8E-33 2.3E-37 194.9 18.2 165 4-174 4-183 (184)
51 2p5s_A RAS and EF-hand domain 100.0 1.5E-32 5.2E-37 195.5 20.2 166 4-174 25-197 (199)
52 3bc1_A RAS-related protein RAB 100.0 3.2E-32 1.1E-36 192.6 21.7 168 4-175 8-186 (195)
53 2ce2_X GTPase HRAS; signaling 100.0 6.9E-32 2.3E-36 186.1 22.7 163 7-174 3-165 (166)
54 2il1_A RAB12; G-protein, GDP, 100.0 7.5E-33 2.6E-37 196.0 18.1 166 4-174 23-190 (192)
55 1g16_A RAS-related protein SEC 100.0 1E-32 3.5E-37 191.2 18.5 164 6-175 2-166 (170)
56 2fg5_A RAB-22B, RAS-related pr 100.0 8.8E-33 3E-37 195.7 18.3 166 4-174 20-186 (192)
57 2g3y_A GTP-binding protein GEM 100.0 2.2E-32 7.5E-37 196.0 20.4 166 5-174 35-203 (211)
58 3cpj_B GTP-binding protein YPT 100.0 1.7E-32 5.9E-37 198.5 19.9 171 5-180 11-182 (223)
59 1z06_A RAS-related protein RAB 100.0 1.6E-32 5.6E-37 193.8 19.3 165 5-173 18-187 (189)
60 3dz8_A RAS-related protein RAB 100.0 2.1E-33 7.1E-38 198.7 14.4 166 5-175 21-187 (191)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 2E-32 6.8E-37 192.5 19.3 165 5-175 3-181 (186)
62 2j1l_A RHO-related GTP-binding 100.0 1.5E-32 5E-37 197.7 18.6 165 5-175 32-210 (214)
63 2o52_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 198.5 15.4 167 5-176 23-190 (200)
64 3con_A GTPase NRAS; structural 100.0 1.2E-31 4E-36 189.4 22.5 164 6-174 20-183 (190)
65 1gwn_A RHO-related GTP-binding 100.0 2E-32 6.7E-37 195.8 18.1 165 4-174 25-204 (205)
66 2gco_A H9, RHO-related GTP-bin 100.0 7.4E-32 2.5E-36 192.2 20.4 163 5-173 23-199 (201)
67 1ky3_A GTP-binding protein YPT 100.0 7.1E-32 2.4E-36 188.9 20.0 172 3-175 4-179 (182)
68 3bwd_D RAC-like GTP-binding pr 100.0 6E-33 2E-37 194.6 14.3 163 5-173 6-180 (182)
69 3clv_A RAB5 protein, putative; 100.0 1.7E-31 5.8E-36 190.4 20.9 164 4-175 4-205 (208)
70 2fv8_A H6, RHO-related GTP-bin 100.0 1.6E-31 5.5E-36 191.3 20.8 164 6-175 24-201 (207)
71 2cjw_A GTP-binding protein GEM 100.0 1.2E-31 4.2E-36 189.8 19.8 168 5-176 4-174 (192)
72 4gzl_A RAS-related C3 botulinu 100.0 3.4E-32 1.2E-36 194.4 17.1 164 3-172 26-203 (204)
73 3cph_A RAS-related protein SEC 100.0 1.6E-31 5.6E-36 191.8 20.0 167 4-176 17-184 (213)
74 1x3s_A RAS-related protein RAB 100.0 1.1E-31 3.8E-36 190.1 18.2 166 6-176 14-180 (195)
75 4djt_A GTP-binding nuclear pro 100.0 1.7E-32 5.7E-37 197.8 13.4 173 2-179 6-180 (218)
76 2yc2_C IFT27, small RAB-relate 100.0 3.1E-32 1.1E-36 194.8 14.1 170 6-177 19-195 (208)
77 2f7s_A C25KG, RAS-related prot 100.0 2.5E-32 8.6E-37 196.8 13.5 167 5-175 23-200 (217)
78 4bas_A ADP-ribosylation factor 100.0 1.8E-31 6.1E-36 189.6 14.8 172 2-176 12-191 (199)
79 3l0i_B RAS-related protein RAB 100.0 2E-33 6.9E-38 200.0 4.3 167 4-175 30-197 (199)
80 3gj0_A GTP-binding nuclear pro 100.0 2E-31 6.8E-36 192.6 12.5 166 3-176 11-177 (221)
81 3t1o_A Gliding protein MGLA; G 100.0 4E-31 1.4E-35 187.5 13.9 165 3-176 10-194 (198)
82 1r8s_A ADP-ribosylation factor 100.0 2.3E-31 8E-36 183.5 11.1 157 8-174 1-162 (164)
83 1upt_A ARL1, ADP-ribosylation 100.0 8.7E-31 3E-35 181.7 13.7 162 5-175 5-170 (171)
84 1zd9_A ADP-ribosylation factor 100.0 3.1E-31 1.1E-35 187.1 9.4 162 5-175 20-186 (188)
85 1f6b_A SAR1; gtpases, N-termin 100.0 5.3E-30 1.8E-34 182.3 15.4 158 5-172 23-197 (198)
86 1zj6_A ADP-ribosylation factor 100.0 4.8E-30 1.7E-34 180.7 14.7 163 5-177 14-181 (187)
87 2h57_A ADP-ribosylation factor 100.0 2E-29 6.8E-34 178.0 17.9 163 4-173 18-186 (190)
88 2b6h_A ADP-ribosylation factor 100.0 5.4E-31 1.8E-35 186.5 9.7 161 4-174 26-191 (192)
89 1m2o_B GTP-binding protein SAR 100.0 1.4E-29 4.6E-34 179.0 16.3 157 5-171 21-189 (190)
90 1ksh_A ARF-like protein 2; sma 100.0 7.4E-30 2.5E-34 179.6 14.7 161 5-175 16-181 (186)
91 2wkq_A NPH1-1, RAS-related C3 100.0 3.5E-29 1.2E-33 191.0 18.8 164 5-174 153-330 (332)
92 3llu_A RAS-related GTP-binding 100.0 1E-29 3.4E-34 180.5 14.0 162 3-172 16-195 (196)
93 1fzq_A ADP-ribosylation factor 100.0 6.5E-30 2.2E-34 179.3 12.6 160 5-174 14-178 (181)
94 2h17_A ADP-ribosylation factor 100.0 1.5E-30 5.2E-35 182.5 9.2 158 4-171 18-180 (181)
95 2x77_A ADP-ribosylation factor 100.0 2.6E-30 9E-35 182.4 10.3 162 5-176 20-186 (189)
96 3th5_A RAS-related C3 botulinu 99.9 3.2E-32 1.1E-36 194.5 0.0 162 5-172 28-203 (204)
97 2f9l_A RAB11B, member RAS onco 100.0 2E-28 6.8E-33 174.2 19.4 164 6-174 4-168 (199)
98 1moz_A ARL1, ADP-ribosylation 100.0 3.6E-30 1.2E-34 180.6 9.1 161 5-175 16-181 (183)
99 2fh5_B SR-beta, signal recogni 100.0 1.2E-28 4.1E-33 177.1 15.8 167 1-171 1-213 (214)
100 2zej_A Dardarin, leucine-rich 100.0 5.7E-30 2E-34 180.0 8.4 164 7-176 2-180 (184)
101 1oix_A RAS-related protein RAB 100.0 9.4E-28 3.2E-32 169.7 19.7 163 5-172 27-190 (191)
102 2wji_A Ferrous iron transport 100.0 1.3E-27 4.4E-32 165.2 16.5 152 7-172 3-163 (165)
103 2qu8_A Putative nucleolar GTP- 100.0 4.2E-27 1.4E-31 170.8 18.0 170 4-179 26-210 (228)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 8.6E-28 2.9E-32 181.5 13.8 165 6-176 2-183 (307)
105 2lkc_A Translation initiation 100.0 6.5E-27 2.2E-31 163.2 16.9 159 3-175 4-172 (178)
106 3iev_A GTP-binding protein ERA 100.0 5.1E-27 1.7E-31 177.2 16.2 166 2-176 5-184 (308)
107 3o47_A ADP-ribosylation factor 100.0 4.1E-28 1.4E-32 184.7 10.2 160 6-175 164-328 (329)
108 3c5h_A Glucocorticoid receptor 99.9 3.6E-28 1.2E-32 179.1 9.0 164 4-173 16-254 (255)
109 3lvq_E ARF-GAP with SH3 domain 99.9 1.2E-27 4E-32 191.8 10.9 163 5-177 320-487 (497)
110 2wjg_A FEOB, ferrous iron tran 99.9 2.1E-26 7.2E-31 162.1 14.9 159 4-176 4-171 (188)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 1.7E-27 5.8E-32 178.7 9.7 161 9-178 1-178 (331)
112 1svi_A GTP-binding protein YSX 99.9 8.1E-27 2.8E-31 165.1 10.7 157 4-173 20-194 (195)
113 2dyk_A GTP-binding protein; GT 99.9 6.6E-26 2.3E-30 155.5 14.3 149 8-172 2-160 (161)
114 2gj8_A MNME, tRNA modification 99.9 2.2E-26 7.4E-31 160.1 11.3 153 6-173 3-165 (172)
115 3dpu_A RAB family protein; roc 99.9 2.1E-26 7.1E-31 185.9 12.9 164 4-176 38-210 (535)
116 3a1s_A Iron(II) transport prot 99.9 4.7E-26 1.6E-30 167.8 13.7 156 5-173 3-166 (258)
117 2cxx_A Probable GTP-binding pr 99.9 1.5E-26 5.1E-31 163.0 10.4 157 8-176 2-186 (190)
118 3b1v_A Ferrous iron uptake tra 99.9 6E-26 2.1E-30 168.2 12.7 154 6-173 2-163 (272)
119 3pqc_A Probable GTP-binding pr 99.9 1.5E-25 5.1E-30 158.4 13.9 158 4-174 20-194 (195)
120 3iby_A Ferrous iron transport 99.9 2.8E-25 9.6E-30 163.5 13.1 150 8-171 2-164 (256)
121 1wf3_A GTP-binding protein; GT 99.9 3.5E-25 1.2E-29 166.5 13.2 160 1-174 1-173 (301)
122 3i8s_A Ferrous iron transport 99.9 2.8E-25 9.5E-30 165.2 11.7 155 7-175 3-170 (274)
123 3k53_A Ferrous iron transport 99.9 1.1E-24 3.7E-29 161.9 14.6 156 7-175 3-167 (271)
124 4dhe_A Probable GTP-binding pr 99.9 5.3E-25 1.8E-29 159.0 9.6 164 4-176 26-213 (223)
125 2hjg_A GTP-binding protein ENG 99.9 2E-24 6.7E-29 170.4 11.8 161 5-176 173-351 (436)
126 3gee_A MNME, tRNA modification 99.9 5E-24 1.7E-28 168.8 14.0 155 7-173 233-397 (476)
127 1nrj_B SR-beta, signal recogni 99.9 5.4E-25 1.9E-29 158.4 7.1 148 4-160 9-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 4.6E-24 1.6E-28 169.2 13.0 163 4-177 192-372 (456)
129 2e87_A Hypothetical protein PH 99.9 5.4E-23 1.8E-27 158.3 18.6 163 5-177 165-339 (357)
130 3sjy_A Translation initiation 99.9 1E-22 3.5E-27 159.1 17.1 165 3-175 4-193 (403)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-23 3.6E-28 160.5 10.8 161 8-176 159-332 (342)
132 1cip_A Protein (guanine nucleo 99.9 5.7E-24 1.9E-28 162.6 8.8 119 54-176 192-346 (353)
133 3qq5_A Small GTP-binding prote 99.9 3.7E-24 1.3E-28 167.0 7.3 158 4-175 31-197 (423)
134 1mky_A Probable GTP-binding pr 99.9 1.7E-22 5.8E-27 159.4 15.7 152 8-174 2-166 (439)
135 1xzp_A Probable tRNA modificat 99.9 1.2E-22 4.1E-27 161.1 14.0 151 7-173 243-404 (482)
136 2xtz_A Guanine nucleotide-bind 99.9 1.8E-23 6.3E-28 159.7 8.3 119 53-175 181-346 (354)
137 3ohm_A Guanine nucleotide-bind 99.9 1.7E-23 5.9E-28 157.8 7.2 120 53-176 165-320 (327)
138 1mky_A Probable GTP-binding pr 99.9 3.6E-22 1.2E-26 157.6 14.7 161 5-176 178-357 (439)
139 1zcb_A G alpha I/13; GTP-bindi 99.9 7.7E-23 2.6E-27 156.8 8.0 119 54-176 200-355 (362)
140 3geh_A MNME, tRNA modification 99.9 2.9E-22 1E-26 158.2 11.4 152 7-175 224-385 (462)
141 3lxx_A GTPase IMAP family memb 99.9 4.6E-21 1.6E-25 139.9 17.0 165 4-175 26-215 (239)
142 1ega_A Protein (GTP-binding pr 99.9 2.3E-22 8E-27 151.2 10.3 157 6-174 7-175 (301)
143 2xtp_A GTPase IMAP family memb 99.9 9.2E-22 3.1E-26 145.3 12.1 164 4-175 19-209 (260)
144 3lxw_A GTPase IMAP family memb 99.9 3.4E-21 1.2E-25 141.1 14.4 166 4-175 18-209 (247)
145 1s0u_A EIF-2-gamma, translatio 99.9 8.6E-21 2.9E-25 148.4 16.6 164 4-174 5-198 (408)
146 4fid_A G protein alpha subunit 99.9 5.3E-22 1.8E-26 150.2 9.3 119 52-174 158-328 (340)
147 2hjg_A GTP-binding protein ENG 99.9 2.7E-22 9.3E-27 158.2 7.9 152 7-174 3-165 (436)
148 2qtf_A Protein HFLX, GTP-bindi 99.9 2.7E-20 9.2E-25 143.1 18.5 161 8-176 179-356 (364)
149 3t5d_A Septin-7; GTP-binding p 99.9 7.6E-22 2.6E-26 146.8 9.2 161 4-173 5-203 (274)
150 3izy_P Translation initiation 99.9 2.3E-23 7.8E-28 166.5 1.0 158 6-173 3-167 (537)
151 1kk1_A EIF2gamma; initiation o 99.9 6.2E-21 2.1E-25 149.4 13.9 164 4-174 7-200 (410)
152 3cb4_D GTP-binding protein LEP 99.9 1E-20 3.5E-25 153.3 15.3 160 6-176 3-184 (599)
153 2ged_A SR-beta, signal recogni 99.9 1.1E-21 3.9E-26 138.4 8.5 124 4-133 45-173 (193)
154 2ywe_A GTP-binding protein LEP 99.9 1.8E-20 6.3E-25 151.6 15.9 160 5-175 4-185 (600)
155 3p26_A Elongation factor 1 alp 99.8 8.2E-21 2.8E-25 151.4 12.3 151 6-163 32-227 (483)
156 1wb1_A Translation elongation 99.8 1.3E-20 4.3E-25 150.0 13.2 156 6-173 18-188 (482)
157 1azs_C GS-alpha; complex (lyas 99.8 4.2E-21 1.4E-25 148.3 9.8 118 55-176 217-387 (402)
158 3tr5_A RF-3, peptide chain rel 99.8 7.6E-21 2.6E-25 152.4 11.2 116 6-131 12-149 (528)
159 3j2k_7 ERF3, eukaryotic polype 99.8 3.1E-20 1E-24 146.4 14.2 154 4-166 14-217 (439)
160 2qag_A Septin-2, protein NEDD5 99.8 1.2E-21 4E-26 150.8 4.4 161 5-175 35-234 (361)
161 2elf_A Protein translation elo 99.8 1.4E-20 4.8E-25 145.0 10.3 147 9-175 23-181 (370)
162 2c78_A Elongation factor TU-A; 99.8 3.6E-20 1.2E-24 144.8 12.5 161 4-173 8-211 (405)
163 1g7s_A Translation initiation 99.8 1.2E-19 4E-24 147.2 14.9 156 6-173 4-217 (594)
164 4dcu_A GTP-binding protein ENG 99.8 3.6E-21 1.2E-25 152.6 5.2 152 7-174 23-185 (456)
165 1jny_A EF-1-alpha, elongation 99.8 2.2E-21 7.4E-26 152.9 3.8 151 5-166 4-205 (435)
166 1zun_B Sulfate adenylate trans 99.8 6.9E-20 2.4E-24 144.3 12.2 152 5-164 22-214 (434)
167 1d2e_A Elongation factor TU (E 99.8 3.8E-20 1.3E-24 144.3 10.2 160 6-174 2-195 (397)
168 2aka_B Dynamin-1; fusion prote 99.8 6.9E-21 2.4E-25 143.2 5.6 159 4-170 23-249 (299)
169 3izq_1 HBS1P, elongation facto 99.8 9.4E-20 3.2E-24 148.5 12.3 156 4-164 164-362 (611)
170 1zo1_I IF2, translation initia 99.8 2.1E-21 7.3E-26 154.0 1.6 156 5-171 2-164 (501)
171 1f60_A Elongation factor EEF1A 99.8 4.1E-20 1.4E-24 146.3 8.5 153 1-164 1-202 (458)
172 2j69_A Bacterial dynamin-like 99.8 3E-19 1E-23 147.7 13.7 167 6-180 68-331 (695)
173 1pui_A ENGB, probable GTP-bind 99.8 3.4E-19 1.2E-23 127.3 10.6 158 5-174 24-199 (210)
174 1udx_A The GTP-binding protein 99.8 2.3E-18 7.8E-23 134.1 14.1 163 8-177 158-328 (416)
175 3def_A T7I23.11 protein; chlor 99.8 1.7E-18 5.7E-23 127.9 12.6 122 5-131 34-166 (262)
176 3avx_A Elongation factor TS, e 99.8 7.6E-19 2.6E-23 149.2 11.6 162 4-174 293-486 (1289)
177 1r5b_A Eukaryotic peptide chai 99.8 8E-20 2.7E-24 145.0 5.1 153 5-165 41-243 (467)
178 3t34_A Dynamin-related protein 99.8 3.3E-19 1.1E-23 137.4 7.9 155 6-167 33-254 (360)
179 1jwy_B Dynamin A GTPase domain 99.8 9.9E-19 3.4E-23 132.4 10.3 113 55-175 131-263 (315)
180 2dy1_A Elongation factor G; tr 99.8 7.1E-18 2.4E-22 138.9 14.3 116 5-129 7-139 (665)
181 1h65_A Chloroplast outer envel 99.8 5.6E-18 1.9E-22 125.6 11.8 122 5-132 37-170 (270)
182 2qnr_A Septin-2, protein NEDD5 99.8 5.6E-19 1.9E-23 132.7 5.9 162 5-176 16-216 (301)
183 2h5e_A Peptide chain release f 99.8 2E-17 6.8E-22 132.8 15.0 116 6-130 12-148 (529)
184 1dar_A EF-G, elongation factor 99.7 2E-17 6.9E-22 136.7 14.0 115 4-130 9-143 (691)
185 1wxq_A GTP-binding protein; st 99.7 7E-18 2.4E-22 131.0 10.3 84 8-91 1-114 (397)
186 3mca_A HBS1, elongation factor 99.7 1.9E-19 6.5E-24 146.3 1.2 161 4-172 174-395 (592)
187 1u0l_A Probable GTPase ENGC; p 99.7 1.6E-18 5.3E-23 130.4 5.6 133 22-169 32-168 (301)
188 2xex_A Elongation factor G; GT 99.7 5.2E-17 1.8E-21 134.3 12.9 117 5-130 8-141 (693)
189 2rdo_7 EF-G, elongation factor 99.7 3.1E-16 1E-20 129.9 16.8 117 4-130 7-148 (704)
190 2qag_C Septin-7; cell cycle, c 99.7 1.5E-17 5.2E-22 129.5 8.6 159 5-173 29-226 (418)
191 3p32_A Probable GTPase RV1496/ 99.7 4.1E-18 1.4E-22 130.9 5.3 104 54-174 171-284 (355)
192 2wsm_A Hydrogenase expression/ 99.7 3.4E-17 1.2E-21 117.8 9.4 154 6-175 29-215 (221)
193 2x2e_A Dynamin-1; nitration, h 99.7 2.4E-18 8.4E-23 132.2 1.3 158 5-170 29-254 (353)
194 2qpt_A EH domain-containing pr 99.7 2.6E-17 8.9E-22 132.8 7.1 119 5-133 63-235 (550)
195 1jal_A YCHF protein; nucleotid 99.7 4.2E-15 1.4E-19 113.5 17.3 84 7-90 2-108 (363)
196 2www_A Methylmalonic aciduria 99.7 8E-17 2.7E-21 123.4 6.5 102 55-173 167-278 (349)
197 4a9a_A Ribosome-interacting GT 99.6 5.7E-15 2E-19 113.4 14.8 118 4-128 69-194 (376)
198 2hf9_A Probable hydrogenase ni 99.6 8.3E-16 2.8E-20 110.9 9.5 154 5-174 36-224 (226)
199 2dby_A GTP-binding protein; GD 99.6 1.3E-14 4.6E-19 111.3 14.0 82 8-90 2-111 (368)
200 1n0u_A EF-2, elongation factor 99.6 2.3E-15 7.7E-20 126.9 9.7 118 4-130 16-164 (842)
201 3vqt_A RF-3, peptide chain rel 99.6 1.8E-14 6E-19 116.2 13.0 115 7-130 31-166 (548)
202 2p67_A LAO/AO transport system 99.6 2.3E-15 8E-20 115.0 7.0 103 55-173 149-260 (341)
203 1yrb_A ATP(GTP)binding protein 99.6 9.3E-15 3.2E-19 107.7 9.5 114 55-174 109-257 (262)
204 3zvr_A Dynamin-1; hydrolase, D 99.6 4.8E-15 1.7E-19 122.4 7.8 155 6-170 50-274 (772)
205 2qm8_A GTPase/ATPase; G protei 99.5 2.4E-14 8.2E-19 109.1 9.3 104 54-173 147-260 (337)
206 3j25_A Tetracycline resistance 99.5 4.8E-14 1.6E-18 115.8 6.2 114 8-130 3-133 (638)
207 2yv5_A YJEQ protein; hydrolase 99.4 1.6E-12 5.4E-17 97.7 11.9 97 65-169 66-164 (302)
208 4fn5_A EF-G 1, elongation fact 99.4 9.9E-12 3.4E-16 103.3 17.0 115 6-129 12-150 (709)
209 3l82_B F-box only protein 4; T 99.4 4.7E-13 1.6E-17 93.7 5.4 111 62-175 109-224 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 1.3E-12 4.4E-17 100.8 7.4 88 5-92 20-130 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 9.4E-11 3.2E-15 90.6 17.4 86 5-90 18-127 (392)
212 3l2o_B F-box only protein 4; s 99.2 3.9E-12 1.4E-16 93.2 3.8 108 62-175 194-309 (312)
213 2qag_B Septin-6, protein NEDD5 99.0 9.5E-10 3.3E-14 85.6 9.3 138 8-155 43-217 (427)
214 2j37_W Signal recognition part 99.0 1.2E-09 4.1E-14 87.1 9.3 151 5-171 99-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 1.3E-10 4.5E-15 89.5 3.7 139 7-161 162-318 (369)
216 1tq4_A IIGP1, interferon-induc 99.0 1.6E-08 5.4E-13 78.7 14.8 162 7-179 69-258 (413)
217 3h2y_A GTPase family protein; 98.9 1.6E-09 5.4E-14 83.5 6.9 97 64-172 55-158 (368)
218 3h2y_A GTPase family protein; 98.9 1.8E-10 6.2E-15 88.7 0.8 137 7-156 160-312 (368)
219 3sop_A Neuronal-specific septi 98.8 1.1E-08 3.7E-13 75.6 8.4 136 7-152 2-178 (270)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 2.8E-09 9.5E-14 82.2 5.2 98 64-173 57-161 (369)
221 1puj_A YLQF, conserved hypothe 98.7 1.9E-08 6.4E-13 74.7 6.1 58 5-67 118-177 (282)
222 3dm5_A SRP54, signal recogniti 98.7 8.6E-08 2.9E-12 75.1 10.0 135 6-155 99-274 (443)
223 1puj_A YLQF, conserved hypothe 98.7 2.2E-08 7.6E-13 74.3 6.4 103 59-174 3-106 (282)
224 2v3c_C SRP54, signal recogniti 98.6 2E-08 6.7E-13 78.8 4.5 103 54-172 180-309 (432)
225 3cnl_A YLQF, putative uncharac 98.6 2.1E-08 7.3E-13 73.6 4.1 56 8-67 100-156 (262)
226 1f5n_A Interferon-induced guan 98.6 7.4E-08 2.5E-12 78.1 6.0 63 5-67 36-103 (592)
227 1t9h_A YLOQ, probable GTPase E 98.4 4.3E-07 1.5E-11 68.0 6.0 93 66-166 74-169 (307)
228 3kl4_A SRP54, signal recogniti 98.4 6.2E-07 2.1E-11 70.2 7.1 87 54-155 179-273 (433)
229 1j8m_F SRP54, signal recogniti 98.3 2.8E-06 9.5E-11 63.5 8.8 91 54-162 180-279 (297)
230 3cnl_A YLQF, putative uncharac 98.2 1.1E-06 3.7E-11 64.5 4.6 94 62-171 4-98 (262)
231 3e70_C DPA, signal recognition 98.2 8.1E-06 2.8E-10 61.8 9.1 89 56-161 213-307 (328)
232 2rcn_A Probable GTPase ENGC; Y 98.1 1.1E-05 3.8E-10 61.6 8.7 84 75-167 127-212 (358)
233 3szr_A Interferon-induced GTP- 98.1 4E-06 1.4E-10 68.7 6.2 23 8-30 46-68 (608)
234 3q5d_A Atlastin-1; G protein, 98.0 8.5E-05 2.9E-09 58.4 11.9 24 6-29 66-89 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.9 7.7E-07 2.6E-11 70.7 -2.4 100 5-106 37-147 (469)
236 1ye8_A Protein THEP1, hypothet 97.7 2.5E-05 8.6E-10 53.8 3.4 21 9-29 2-22 (178)
237 4dzz_A Plasmid partitioning pr 97.7 3.3E-05 1.1E-09 54.2 4.1 88 54-151 75-162 (206)
238 2xxa_A Signal recognition part 97.7 0.00012 4.2E-09 57.4 7.2 23 6-28 99-121 (433)
239 1kgd_A CASK, peripheral plasma 97.6 3.1E-05 1E-09 53.4 3.2 21 9-29 7-27 (180)
240 1lvg_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 53.7 3.2 22 8-29 5-26 (198)
241 3tr0_A Guanylate kinase, GMP k 97.5 5.2E-05 1.8E-09 53.1 3.2 22 9-30 9-30 (205)
242 3a00_A Guanylate kinase, GMP k 97.5 5.6E-05 1.9E-09 52.3 3.1 20 10-29 4-23 (186)
243 1zp6_A Hypothetical protein AT 97.5 5.4E-05 1.8E-09 52.5 2.8 23 8-30 10-32 (191)
244 3c8u_A Fructokinase; YP_612366 97.5 8.7E-05 3E-09 52.3 3.9 25 5-29 20-44 (208)
245 2ffh_A Protein (FFH); SRP54, s 97.5 0.00018 6.3E-09 56.2 5.9 86 54-154 180-271 (425)
246 1znw_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 52.6 3.1 22 9-30 22-43 (207)
247 3ney_A 55 kDa erythrocyte memb 97.4 8.2E-05 2.8E-09 52.0 3.2 23 8-30 20-42 (197)
248 1z6g_A Guanylate kinase; struc 97.4 8E-05 2.7E-09 53.0 3.1 21 9-29 25-45 (218)
249 1s96_A Guanylate kinase, GMP k 97.4 8.2E-05 2.8E-09 53.0 3.2 23 8-30 17-39 (219)
250 4gp7_A Metallophosphoesterase; 97.4 6.7E-05 2.3E-09 51.3 2.6 20 9-28 11-30 (171)
251 3tau_A Guanylate kinase, GMP k 97.4 9.2E-05 3.2E-09 52.2 3.2 23 8-30 9-31 (208)
252 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.6E-09 50.1 3.2 22 8-29 5-26 (173)
253 1ex7_A Guanylate kinase; subst 97.4 0.00011 3.8E-09 50.9 3.2 21 10-30 4-24 (186)
254 2qor_A Guanylate kinase; phosp 97.4 0.00011 3.8E-09 51.6 3.2 23 7-29 12-34 (204)
255 1ly1_A Polynucleotide kinase; 97.4 0.00016 5.3E-09 49.5 3.8 22 8-29 3-24 (181)
256 2j41_A Guanylate kinase; GMP, 97.3 0.00012 3.9E-09 51.4 3.1 24 8-31 7-30 (207)
257 1htw_A HI0065; nucleotide-bind 97.3 0.00013 4.4E-09 49.2 3.1 22 9-30 35-56 (158)
258 2bdt_A BH3686; alpha-beta prot 97.3 0.00012 4.2E-09 50.6 3.1 21 9-29 4-24 (189)
259 3lw7_A Adenylate kinase relate 97.3 0.00012 4.1E-09 49.7 3.0 19 9-27 3-21 (179)
260 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.3E-09 49.6 3.1 21 9-29 3-23 (173)
261 4eun_A Thermoresistant glucoki 97.3 0.00014 4.8E-09 50.9 3.2 23 7-29 29-51 (200)
262 1knq_A Gluconate kinase; ALFA/ 97.3 0.00024 8.2E-09 48.5 4.3 23 7-29 8-30 (175)
263 3tif_A Uncharacterized ABC tra 97.3 0.00013 4.5E-09 52.5 3.0 21 9-29 33-53 (235)
264 2rcn_A Probable GTPase ENGC; Y 97.3 0.00015 5.1E-09 55.4 3.4 23 9-31 217-239 (358)
265 3asz_A Uridine kinase; cytidin 97.3 0.00016 5.6E-09 50.9 3.3 24 6-29 5-28 (211)
266 1cke_A CK, MSSA, protein (cyti 97.3 0.00021 7.1E-09 50.9 3.8 23 7-29 5-27 (227)
267 3cwq_A Para family chromosome 97.3 0.0081 2.8E-07 42.2 12.1 66 54-129 67-133 (209)
268 2cdn_A Adenylate kinase; phosp 97.3 0.00025 8.6E-09 49.5 4.1 26 4-29 17-42 (201)
269 2bbw_A Adenylate kinase 4, AK4 97.3 0.00018 6.3E-09 52.0 3.4 22 7-28 27-48 (246)
270 2qt1_A Nicotinamide riboside k 97.2 0.00024 8.3E-09 49.9 3.9 28 3-30 17-44 (207)
271 2i3b_A HCR-ntpase, human cance 97.2 0.00017 5.8E-09 50.1 3.0 21 9-29 3-23 (189)
272 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.1E-09 50.5 3.4 21 9-29 2-22 (216)
273 2onk_A Molybdate/tungstate ABC 97.2 0.0002 6.8E-09 51.8 3.2 22 9-30 26-47 (240)
274 3t61_A Gluconokinase; PSI-biol 97.2 0.00023 7.8E-09 49.8 3.4 23 7-29 18-40 (202)
275 2pcj_A ABC transporter, lipopr 97.2 0.00016 5.6E-09 51.6 2.7 21 9-29 32-52 (224)
276 1qhx_A CPT, protein (chloramph 97.2 0.00022 7.4E-09 48.7 3.2 22 8-29 4-25 (178)
277 3dl0_A Adenylate kinase; phosp 97.2 0.00023 7.8E-09 50.3 3.4 21 9-29 2-22 (216)
278 3vaa_A Shikimate kinase, SK; s 97.2 0.00024 8.2E-09 49.6 3.4 22 8-29 26-47 (199)
279 1y63_A LMAJ004144AAA protein; 97.2 0.00034 1.2E-08 48.2 4.1 25 6-30 9-33 (184)
280 3tlx_A Adenylate kinase 2; str 97.2 0.00031 1E-08 50.8 4.0 25 5-29 27-51 (243)
281 1b0u_A Histidine permease; ABC 97.2 0.0002 7E-09 52.4 3.1 21 9-29 34-54 (262)
282 3gfo_A Cobalt import ATP-bindi 97.2 0.0002 7E-09 52.8 3.1 21 9-29 36-56 (275)
283 2if2_A Dephospho-COA kinase; a 97.2 0.00022 7.4E-09 50.0 3.1 22 8-29 2-23 (204)
284 1zd8_A GTP:AMP phosphotransfer 97.2 0.00022 7.5E-09 50.9 3.1 25 5-29 5-29 (227)
285 1np6_A Molybdopterin-guanine d 97.2 0.00024 8.2E-09 48.7 3.2 23 7-29 6-28 (174)
286 1jjv_A Dephospho-COA kinase; P 97.2 0.00026 9E-09 49.6 3.5 22 8-29 3-24 (206)
287 1sgw_A Putative ABC transporte 97.2 0.00022 7.5E-09 50.6 3.1 21 9-29 37-57 (214)
288 3ec2_A DNA replication protein 97.2 0.00019 6.5E-09 49.2 2.7 22 8-29 39-60 (180)
289 2eyu_A Twitching motility prot 97.2 0.00022 7.7E-09 52.1 3.1 22 8-29 26-47 (261)
290 2cbz_A Multidrug resistance-as 97.2 0.00024 8.2E-09 51.2 3.2 21 9-29 33-53 (237)
291 2v9p_A Replication protein E1; 97.2 0.00024 8.3E-09 53.1 3.3 22 8-29 127-148 (305)
292 3tqc_A Pantothenate kinase; bi 97.2 0.00038 1.3E-08 52.4 4.4 26 4-29 89-114 (321)
293 1odf_A YGR205W, hypothetical 3 97.2 0.00038 1.3E-08 51.7 4.3 26 4-29 28-53 (290)
294 3sr0_A Adenylate kinase; phosp 97.2 0.00027 9.3E-09 49.8 3.4 21 9-29 2-22 (206)
295 2jaq_A Deoxyguanosine kinase; 97.2 0.00028 9.5E-09 49.2 3.4 21 9-29 2-22 (205)
296 4g1u_C Hemin import ATP-bindin 97.2 0.00022 7.6E-09 52.3 3.0 21 9-29 39-59 (266)
297 3b85_A Phosphate starvation-in 97.1 0.00022 7.6E-09 50.3 2.8 22 9-30 24-45 (208)
298 1gvn_B Zeta; postsegregational 97.1 0.00037 1.3E-08 51.7 4.1 25 5-29 31-55 (287)
299 2ff7_A Alpha-hemolysin translo 97.1 0.00027 9.1E-09 51.3 3.2 21 9-29 37-57 (247)
300 1aky_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 49.7 3.7 23 7-29 4-26 (220)
301 1g6h_A High-affinity branched- 97.1 0.00024 8.2E-09 51.9 3.0 21 9-29 35-55 (257)
302 1mv5_A LMRA, multidrug resista 97.1 0.00027 9.4E-09 51.1 3.3 21 9-29 30-50 (243)
303 2pze_A Cystic fibrosis transme 97.1 0.00025 8.7E-09 50.8 3.1 21 9-29 36-56 (229)
304 2rhm_A Putative kinase; P-loop 97.1 0.00031 1.1E-08 48.6 3.4 23 7-29 5-27 (193)
305 3cm0_A Adenylate kinase; ATP-b 97.1 0.00033 1.1E-08 48.2 3.5 23 7-29 4-26 (186)
306 1nks_A Adenylate kinase; therm 97.1 0.00024 8.1E-09 49.1 2.8 21 9-29 3-23 (194)
307 2olj_A Amino acid ABC transpor 97.1 0.00025 8.7E-09 51.9 3.1 21 9-29 52-72 (263)
308 3uie_A Adenylyl-sulfate kinase 97.1 0.00037 1.3E-08 48.7 3.8 23 7-29 25-47 (200)
309 3lnc_A Guanylate kinase, GMP k 97.1 0.00015 5.2E-09 51.9 1.8 22 9-30 29-51 (231)
310 1u0l_A Probable GTPase ENGC; p 97.1 0.00024 8.1E-09 53.1 2.9 23 9-31 171-193 (301)
311 2jeo_A Uridine-cytidine kinase 97.1 0.00038 1.3E-08 50.3 3.9 23 7-29 25-47 (245)
312 3aez_A Pantothenate kinase; tr 97.1 0.0004 1.4E-08 52.1 4.1 25 5-29 88-112 (312)
313 1ukz_A Uridylate kinase; trans 97.1 0.00044 1.5E-08 48.3 4.1 25 5-29 13-37 (203)
314 1rj9_A FTSY, signal recognitio 97.1 0.00043 1.5E-08 51.8 4.2 84 56-154 186-281 (304)
315 1kht_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 48.2 3.5 22 8-29 4-25 (192)
316 1vpl_A ABC transporter, ATP-bi 97.1 0.00027 9.4E-09 51.5 3.1 21 9-29 43-63 (256)
317 1ji0_A ABC transporter; ATP bi 97.1 0.00027 9.3E-09 51.0 3.0 21 9-29 34-54 (240)
318 1t9h_A YLOQ, probable GTPase E 97.1 7.7E-05 2.6E-09 55.8 0.1 23 8-30 174-196 (307)
319 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00029 9.9E-09 51.2 3.2 22 9-30 31-52 (250)
320 2qi9_C Vitamin B12 import ATP- 97.1 0.00028 9.7E-09 51.2 3.1 21 9-29 28-48 (249)
321 1tev_A UMP-CMP kinase; ploop, 97.1 0.00039 1.3E-08 48.1 3.7 23 7-29 3-25 (196)
322 2plr_A DTMP kinase, probable t 97.1 0.00042 1.4E-08 48.6 3.8 23 7-29 4-26 (213)
323 3trf_A Shikimate kinase, SK; a 97.1 0.00037 1.3E-08 47.9 3.4 23 7-29 5-27 (185)
324 2zu0_C Probable ATP-dependent 97.1 0.00032 1.1E-08 51.5 3.2 22 9-30 48-69 (267)
325 2ghi_A Transport protein; mult 97.1 0.00033 1.1E-08 51.2 3.2 21 9-29 48-68 (260)
326 2ehv_A Hypothetical protein PH 97.1 0.00032 1.1E-08 50.5 3.2 20 9-28 32-51 (251)
327 2yv5_A YJEQ protein; hydrolase 97.1 0.00031 1.1E-08 52.5 3.1 21 8-28 166-186 (302)
328 1qf9_A UMP/CMP kinase, protein 97.1 0.00046 1.6E-08 47.6 3.8 24 6-29 5-28 (194)
329 2ixe_A Antigen peptide transpo 97.1 0.00031 1.1E-08 51.7 3.0 21 9-29 47-67 (271)
330 4ido_A Atlastin-1; GTPase, GTP 97.1 0.0008 2.7E-08 52.8 5.4 62 6-67 66-152 (457)
331 2p5t_B PEZT; postsegregational 97.1 0.00036 1.2E-08 50.7 3.3 26 4-29 29-54 (253)
332 2ihy_A ABC transporter, ATP-bi 97.1 0.00036 1.2E-08 51.5 3.3 21 9-29 49-69 (279)
333 2nq2_C Hypothetical ABC transp 97.1 0.00033 1.1E-08 51.0 3.0 21 9-29 33-53 (253)
334 1zak_A Adenylate kinase; ATP:A 97.0 0.00033 1.1E-08 49.8 3.0 24 6-29 4-27 (222)
335 1sq5_A Pantothenate kinase; P- 97.0 0.00046 1.6E-08 51.7 3.8 25 5-29 78-102 (308)
336 4a74_A DNA repair and recombin 97.0 0.00031 1.1E-08 50.0 2.8 21 9-29 27-47 (231)
337 2v54_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 48.0 3.8 24 7-30 4-27 (204)
338 1e4v_A Adenylate kinase; trans 97.0 0.00035 1.2E-08 49.3 3.0 21 9-29 2-22 (214)
339 3nh6_A ATP-binding cassette SU 97.0 0.00033 1.1E-08 52.4 2.9 21 9-29 82-102 (306)
340 1via_A Shikimate kinase; struc 97.0 0.00038 1.3E-08 47.5 3.0 21 9-29 6-26 (175)
341 2yz2_A Putative ABC transporte 97.0 0.00036 1.2E-08 51.2 3.0 21 9-29 35-55 (266)
342 2f1r_A Molybdopterin-guanine d 97.0 0.00018 6E-09 49.2 1.2 21 9-29 4-24 (171)
343 1lw7_A Transcriptional regulat 97.0 0.00034 1.2E-08 53.7 2.9 22 8-29 171-192 (365)
344 2x8a_A Nuclear valosin-contain 97.0 0.0004 1.4E-08 51.2 3.2 20 10-29 47-66 (274)
345 2kjq_A DNAA-related protein; s 97.0 0.00034 1.1E-08 46.7 2.5 21 9-29 38-58 (149)
346 1rz3_A Hypothetical protein rb 97.0 0.00059 2E-08 47.7 3.8 25 5-29 20-44 (201)
347 1uf9_A TT1252 protein; P-loop, 97.0 0.00052 1.8E-08 47.8 3.5 27 4-30 5-31 (203)
348 2pt5_A Shikimate kinase, SK; a 97.0 0.00052 1.8E-08 46.4 3.4 21 9-29 2-22 (168)
349 2pjz_A Hypothetical protein ST 97.0 0.00045 1.5E-08 50.6 3.3 21 9-29 32-52 (263)
350 1xjc_A MOBB protein homolog; s 97.0 0.00058 2E-08 46.5 3.6 23 7-29 4-26 (169)
351 2c95_A Adenylate kinase 1; tra 97.0 0.00052 1.8E-08 47.6 3.4 23 7-29 9-31 (196)
352 2wwf_A Thymidilate kinase, put 97.0 0.00053 1.8E-08 48.2 3.4 24 6-29 9-32 (212)
353 2z0h_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 47.8 3.1 21 9-29 2-22 (197)
354 1ak2_A Adenylate kinase isoenz 97.0 0.00063 2.1E-08 48.8 3.8 24 6-29 15-38 (233)
355 3iij_A Coilin-interacting nucl 97.0 0.0006 2.1E-08 46.7 3.6 23 7-29 11-33 (180)
356 2vli_A Antibiotic resistance p 97.0 0.00037 1.3E-08 47.8 2.5 23 7-29 5-27 (183)
357 3jvv_A Twitching mobility prot 97.0 0.00045 1.5E-08 52.8 3.1 21 9-29 125-145 (356)
358 2ze6_A Isopentenyl transferase 96.9 0.0005 1.7E-08 50.0 3.2 21 9-29 3-23 (253)
359 3umf_A Adenylate kinase; rossm 96.9 0.00053 1.8E-08 48.7 3.2 24 6-29 27-51 (217)
360 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 48.5 3.4 21 9-29 2-22 (223)
361 2pbr_A DTMP kinase, thymidylat 96.9 0.00057 1.9E-08 47.2 3.1 21 9-29 2-22 (195)
362 1uj2_A Uridine-cytidine kinase 96.9 0.0007 2.4E-08 49.1 3.7 24 6-29 21-44 (252)
363 3tui_C Methionine import ATP-b 96.9 0.00056 1.9E-08 52.4 3.2 21 9-29 56-76 (366)
364 1ixz_A ATP-dependent metallopr 96.9 0.00058 2E-08 49.5 3.2 20 10-29 52-71 (254)
365 1nn5_A Similar to deoxythymidy 96.9 0.00066 2.3E-08 47.7 3.4 23 7-29 9-31 (215)
366 2yvu_A Probable adenylyl-sulfa 96.9 0.0009 3.1E-08 46.1 4.0 24 6-29 12-35 (186)
367 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00048 1.6E-08 52.6 2.8 21 9-29 32-52 (359)
368 2f6r_A COA synthase, bifunctio 96.9 0.00076 2.6E-08 49.8 3.7 25 5-29 73-97 (281)
369 1e6c_A Shikimate kinase; phosp 96.9 0.00068 2.3E-08 46.0 3.2 21 9-29 4-24 (173)
370 2bwj_A Adenylate kinase 5; pho 96.9 0.00066 2.3E-08 47.1 3.2 23 7-29 12-34 (199)
371 1z47_A CYSA, putative ABC-tran 96.9 0.0006 2.1E-08 52.0 3.2 22 9-30 43-64 (355)
372 3be4_A Adenylate kinase; malar 96.9 0.00054 1.9E-08 48.5 2.7 23 7-29 5-27 (217)
373 3b9q_A Chloroplast SRP recepto 96.9 0.00063 2.1E-08 50.8 3.2 23 7-29 100-122 (302)
374 3rlf_A Maltose/maltodextrin im 96.9 0.00062 2.1E-08 52.4 3.2 21 9-29 31-51 (381)
375 1vht_A Dephospho-COA kinase; s 96.9 0.00085 2.9E-08 47.4 3.7 23 7-29 4-26 (218)
376 2yyz_A Sugar ABC transporter, 96.9 0.00063 2.2E-08 52.0 3.2 21 9-29 31-51 (359)
377 2bbs_A Cystic fibrosis transme 96.9 0.00057 1.9E-08 50.8 2.9 21 9-29 66-86 (290)
378 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00085 2.9E-08 49.0 3.8 23 7-29 4-26 (260)
379 1gtv_A TMK, thymidylate kinase 96.8 0.00022 7.7E-09 50.2 0.6 21 9-29 2-22 (214)
380 2grj_A Dephospho-COA kinase; T 96.8 0.0009 3.1E-08 46.6 3.7 26 4-29 9-34 (192)
381 2it1_A 362AA long hypothetical 96.8 0.00066 2.2E-08 52.0 3.2 21 9-29 31-51 (362)
382 4e22_A Cytidylate kinase; P-lo 96.8 0.00087 3E-08 48.7 3.8 21 8-28 28-48 (252)
383 2iyv_A Shikimate kinase, SK; t 96.8 0.00071 2.4E-08 46.5 3.1 21 9-29 4-24 (184)
384 2ewv_A Twitching motility prot 96.8 0.00063 2.1E-08 52.4 3.1 22 8-29 137-158 (372)
385 1v43_A Sugar-binding transport 96.8 0.00074 2.5E-08 51.9 3.2 21 9-29 39-59 (372)
386 1g29_1 MALK, maltose transport 96.8 0.00073 2.5E-08 52.0 3.2 22 9-30 31-52 (372)
387 1jbk_A CLPB protein; beta barr 96.8 0.00082 2.8E-08 46.0 3.2 24 7-30 43-66 (195)
388 2pez_A Bifunctional 3'-phospho 96.8 0.0011 3.8E-08 45.3 3.8 23 7-29 5-27 (179)
389 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00064 2.2E-08 51.5 2.7 21 9-29 173-193 (330)
390 1in4_A RUVB, holliday junction 96.8 0.0008 2.7E-08 51.0 3.2 21 9-29 53-73 (334)
391 2gza_A Type IV secretion syste 96.8 0.00066 2.2E-08 52.1 2.7 22 8-29 176-197 (361)
392 1p9r_A General secretion pathw 96.8 0.00078 2.7E-08 52.6 3.1 21 9-29 169-189 (418)
393 4eaq_A DTMP kinase, thymidylat 96.8 0.0016 5.4E-08 46.6 4.5 24 6-29 25-48 (229)
394 3r20_A Cytidylate kinase; stru 96.8 0.001 3.4E-08 47.8 3.4 24 6-29 8-31 (233)
395 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00089 3E-08 47.6 3.1 21 9-29 25-45 (235)
396 2vp4_A Deoxynucleoside kinase; 96.7 0.001 3.6E-08 47.5 3.5 25 6-30 19-43 (230)
397 1iy2_A ATP-dependent metallopr 96.7 0.0009 3.1E-08 49.2 3.2 20 10-29 76-95 (278)
398 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4E-08 44.6 3.5 24 6-29 6-29 (168)
399 3d31_A Sulfate/molybdate ABC t 96.7 0.00061 2.1E-08 51.9 2.1 21 9-29 28-48 (348)
400 1m7g_A Adenylylsulfate kinase; 96.7 0.0011 3.9E-08 46.6 3.1 23 7-29 25-47 (211)
401 2oap_1 GSPE-2, type II secreti 96.7 0.00089 3.1E-08 53.7 2.8 21 9-29 262-282 (511)
402 2og2_A Putative signal recogni 96.7 0.0011 3.7E-08 50.7 3.2 23 7-29 157-179 (359)
403 3nwj_A ATSK2; P loop, shikimat 96.6 0.0011 3.8E-08 48.1 2.9 22 8-29 49-70 (250)
404 3gd7_A Fusion complex of cysti 96.6 0.00097 3.3E-08 51.6 2.8 21 9-29 49-69 (390)
405 1nij_A Hypothetical protein YJ 96.6 0.00084 2.9E-08 50.5 2.3 23 8-30 5-27 (318)
406 1lv7_A FTSH; alpha/beta domain 96.6 0.0013 4.3E-08 47.8 3.2 22 8-29 46-67 (257)
407 1oxx_K GLCV, glucose, ABC tran 96.6 0.00059 2E-08 52.1 1.4 21 9-29 33-53 (353)
408 2yhs_A FTSY, cell division pro 96.6 0.0012 4.2E-08 52.4 3.2 23 7-29 293-315 (503)
409 2cvh_A DNA repair and recombin 96.6 0.0013 4.6E-08 46.2 3.1 21 9-29 22-42 (220)
410 1ltq_A Polynucleotide kinase; 96.6 0.0017 5.7E-08 48.3 3.8 22 8-29 3-24 (301)
411 1cr0_A DNA primase/helicase; R 96.6 0.0011 3.9E-08 49.2 2.8 22 9-30 37-58 (296)
412 3syl_A Protein CBBX; photosynt 96.6 0.0019 6.4E-08 48.1 3.9 26 4-29 64-89 (309)
413 3t15_A Ribulose bisphosphate c 96.6 0.0019 6.5E-08 48.0 3.9 24 6-29 35-58 (293)
414 1n0w_A DNA repair protein RAD5 96.6 0.0015 5E-08 46.8 3.2 22 9-30 26-47 (243)
415 3foz_A TRNA delta(2)-isopenten 96.6 0.0021 7.2E-08 48.0 4.0 27 3-29 6-32 (316)
416 3bos_A Putative DNA replicatio 96.5 0.0015 5E-08 46.6 3.1 24 6-29 51-74 (242)
417 2p65_A Hypothetical protein PF 96.5 0.0011 3.8E-08 45.1 2.4 24 7-30 43-66 (187)
418 1q3t_A Cytidylate kinase; nucl 96.5 0.002 6.8E-08 46.2 3.8 25 5-29 14-38 (236)
419 1svm_A Large T antigen; AAA+ f 96.5 0.0014 4.9E-08 50.4 3.1 22 8-29 170-191 (377)
420 3gmt_A Adenylate kinase; ssgci 96.5 0.0018 6.2E-08 46.3 3.4 26 4-29 5-30 (230)
421 3ozx_A RNAse L inhibitor; ATP 96.5 0.0023 7.9E-08 51.7 4.4 29 2-30 20-48 (538)
422 2w58_A DNAI, primosome compone 96.5 0.0017 5.8E-08 45.3 3.1 22 8-29 55-76 (202)
423 3kta_A Chromosome segregation 96.5 0.0016 5.4E-08 44.6 2.8 21 9-29 28-48 (182)
424 2obl_A ESCN; ATPase, hydrolase 96.5 0.0016 5.5E-08 49.6 3.1 23 8-30 72-94 (347)
425 1tue_A Replication protein E1; 96.5 0.0013 4.5E-08 46.1 2.4 21 9-29 60-80 (212)
426 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0013 4.4E-08 52.1 2.6 23 8-30 139-161 (460)
427 3b5x_A Lipid A export ATP-bind 96.4 0.0026 8.9E-08 51.9 4.0 21 9-29 371-391 (582)
428 3b60_A Lipid A export ATP-bind 96.4 0.0023 7.9E-08 52.2 3.6 21 9-29 371-391 (582)
429 3b9p_A CG5977-PA, isoform A; A 96.4 0.0021 7.1E-08 47.7 3.1 23 7-29 54-76 (297)
430 3n70_A Transport activator; si 96.4 0.0024 8.1E-08 42.2 3.0 24 7-30 24-47 (145)
431 3euj_A Chromosome partition pr 96.4 0.0021 7.3E-08 51.0 3.2 21 9-29 31-51 (483)
432 3qf4_B Uncharacterized ABC tra 96.3 0.0025 8.4E-08 52.2 3.6 22 8-29 382-403 (598)
433 3ake_A Cytidylate kinase; CMP 96.3 0.0024 8.3E-08 44.5 3.1 21 9-29 4-24 (208)
434 1a7j_A Phosphoribulokinase; tr 96.3 0.0016 5.6E-08 48.3 2.3 24 6-29 4-27 (290)
435 2yl4_A ATP-binding cassette SU 96.3 0.0024 8.3E-08 52.2 3.5 21 9-29 372-392 (595)
436 2qmh_A HPR kinase/phosphorylas 96.3 0.0029 1E-07 44.1 3.3 24 8-31 35-58 (205)
437 1njg_A DNA polymerase III subu 96.3 0.0025 8.6E-08 45.2 3.1 21 9-29 47-67 (250)
438 2chg_A Replication factor C sm 96.3 0.0026 8.8E-08 44.5 3.1 20 10-29 41-60 (226)
439 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0026 8.7E-08 42.3 2.9 19 10-28 26-44 (149)
440 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0026 8.8E-08 51.4 3.4 22 9-30 49-70 (538)
441 3cf0_A Transitional endoplasmi 96.3 0.0024 8.3E-08 47.6 3.1 23 7-29 49-71 (301)
442 3h4m_A Proteasome-activating n 96.3 0.0033 1.1E-07 46.3 3.7 23 7-29 51-73 (285)
443 3zvl_A Bifunctional polynucleo 96.3 0.0036 1.2E-07 48.9 4.1 24 6-29 257-280 (416)
444 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0036 1.2E-07 45.3 3.8 23 7-29 39-61 (262)
445 2dpy_A FLII, flagellum-specifi 96.3 0.0025 8.4E-08 50.2 3.1 23 8-30 158-180 (438)
446 1nlf_A Regulatory protein REPA 96.2 0.0023 8E-08 47.0 2.8 21 9-29 32-52 (279)
447 3d3q_A TRNA delta(2)-isopenten 96.2 0.0035 1.2E-07 47.5 3.7 22 8-29 8-29 (340)
448 4a82_A Cystic fibrosis transme 96.2 0.0021 7.1E-08 52.4 2.7 21 9-29 369-389 (578)
449 1vma_A Cell division protein F 96.2 0.003 1E-07 47.3 3.2 86 55-155 187-284 (306)
450 2px0_A Flagellar biosynthesis 96.2 0.0025 8.6E-08 47.4 2.8 22 7-28 105-126 (296)
451 4b4t_K 26S protease regulatory 96.2 0.0029 1E-07 49.5 3.2 22 8-29 207-228 (428)
452 3j16_B RLI1P; ribosome recycli 96.2 0.0029 9.8E-08 51.8 3.2 22 9-30 105-126 (608)
453 3crm_A TRNA delta(2)-isopenten 96.2 0.0043 1.5E-07 46.7 3.9 23 7-29 5-27 (323)
454 1l8q_A Chromosomal replication 96.2 0.003 1E-07 47.4 3.1 22 8-29 38-59 (324)
455 4fcw_A Chaperone protein CLPB; 96.2 0.005 1.7E-07 45.8 4.2 22 8-29 48-69 (311)
456 1d2n_A N-ethylmaleimide-sensit 96.2 0.0048 1.6E-07 45.1 4.1 25 5-29 62-86 (272)
457 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0051 1.8E-07 46.8 4.2 24 6-29 23-46 (359)
458 2r8r_A Sensor protein; KDPD, P 96.1 0.005 1.7E-07 43.8 3.9 25 3-27 2-26 (228)
459 4b4t_M 26S protease regulatory 96.1 0.0043 1.5E-07 48.6 3.8 23 7-29 215-237 (434)
460 3qf4_A ABC transporter, ATP-bi 96.1 0.0031 1.1E-07 51.5 3.1 21 9-29 371-391 (587)
461 1sxj_E Activator 1 40 kDa subu 96.1 0.0043 1.5E-07 47.1 3.5 20 10-29 39-58 (354)
462 2dr3_A UPF0273 protein PH0284; 96.0 0.0035 1.2E-07 44.9 2.8 21 9-29 25-45 (247)
463 1p5z_B DCK, deoxycytidine kina 96.0 0.003 1E-07 46.1 2.4 24 6-29 23-46 (263)
464 3bk7_A ABC transporter ATP-bin 96.0 0.0038 1.3E-07 51.1 3.3 22 9-30 119-140 (607)
465 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0038 1.3E-07 47.0 3.1 23 7-29 45-67 (322)
466 1sxj_C Activator 1 40 kDa subu 96.0 0.0038 1.3E-07 47.3 3.1 21 10-30 49-69 (340)
467 4b4t_J 26S protease regulatory 96.0 0.0039 1.3E-07 48.3 3.2 23 7-29 182-204 (405)
468 3ozx_A RNAse L inhibitor; ATP 96.0 0.0036 1.2E-07 50.6 3.1 22 9-30 296-317 (538)
469 1c9k_A COBU, adenosylcobinamid 96.0 0.0039 1.3E-07 42.8 2.8 21 10-30 2-22 (180)
470 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0043 1.5E-07 50.1 3.4 22 9-30 314-335 (538)
471 4b4t_L 26S protease subunit RP 96.0 0.0053 1.8E-07 48.1 3.8 23 7-29 215-237 (437)
472 2ocp_A DGK, deoxyguanosine kin 96.0 0.0048 1.6E-07 44.3 3.4 23 7-29 2-24 (241)
473 1ofh_A ATP-dependent HSL prote 96.0 0.0042 1.4E-07 46.1 3.2 23 7-29 50-72 (310)
474 3tqf_A HPR(Ser) kinase; transf 96.0 0.0048 1.6E-07 42.0 3.1 24 8-31 17-40 (181)
475 4edh_A DTMP kinase, thymidylat 96.0 0.0047 1.6E-07 43.7 3.1 23 7-29 6-28 (213)
476 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.0044 1.5E-07 47.5 3.2 19 10-28 26-44 (365)
477 3bk7_A ABC transporter ATP-bin 95.9 0.0047 1.6E-07 50.6 3.4 22 9-30 384-405 (607)
478 2qby_A CDC6 homolog 1, cell di 95.9 0.004 1.4E-07 47.6 2.8 23 7-29 45-67 (386)
479 1fnn_A CDC6P, cell division co 95.9 0.0047 1.6E-07 47.3 3.2 22 9-30 46-67 (389)
480 2h92_A Cytidylate kinase; ross 95.9 0.0051 1.7E-07 43.3 3.1 23 7-29 3-25 (219)
481 4i1u_A Dephospho-COA kinase; s 95.9 0.0085 2.9E-07 42.2 4.1 26 4-29 6-31 (210)
482 1pzn_A RAD51, DNA repair and r 95.9 0.0042 1.4E-07 47.3 2.8 22 9-30 133-154 (349)
483 3v9p_A DTMP kinase, thymidylat 95.9 0.0039 1.4E-07 44.5 2.4 23 7-29 25-47 (227)
484 3exa_A TRNA delta(2)-isopenten 95.9 0.0058 2E-07 45.7 3.3 22 8-29 4-25 (322)
485 3j16_B RLI1P; ribosome recycli 95.9 0.0051 1.7E-07 50.4 3.2 22 9-30 380-401 (608)
486 3eie_A Vacuolar protein sortin 95.8 0.0071 2.4E-07 45.5 3.8 23 7-29 51-73 (322)
487 3co5_A Putative two-component 95.8 0.0024 8.3E-08 42.0 1.1 22 8-29 28-49 (143)
488 4b4t_I 26S protease regulatory 95.8 0.0054 1.8E-07 47.9 3.1 23 7-29 216-238 (437)
489 1sxj_D Activator 1 41 kDa subu 95.8 0.0056 1.9E-07 46.3 3.1 20 10-29 61-80 (353)
490 2r62_A Cell division protease 95.8 0.0024 8.2E-08 46.5 1.1 21 9-29 46-66 (268)
491 3m6a_A ATP-dependent protease 95.7 0.0059 2E-07 49.4 3.1 23 7-29 108-130 (543)
492 2qp9_X Vacuolar protein sortin 95.7 0.0063 2.1E-07 46.5 3.1 22 8-29 85-106 (355)
493 4f4c_A Multidrug resistance pr 95.7 0.0051 1.7E-07 54.9 2.9 22 8-29 1106-1127(1321)
494 2qgz_A Helicase loader, putati 95.7 0.0066 2.2E-07 45.4 3.1 23 7-29 152-174 (308)
495 4b4t_H 26S protease regulatory 95.7 0.0055 1.9E-07 48.2 2.8 23 7-29 243-265 (467)
496 3uk6_A RUVB-like 2; hexameric 95.7 0.0057 1.9E-07 46.7 2.8 22 8-29 71-92 (368)
497 3a8t_A Adenylate isopentenyltr 95.7 0.01 3.4E-07 44.9 4.0 22 8-29 41-62 (339)
498 2v1u_A Cell division control p 95.7 0.0055 1.9E-07 46.8 2.7 24 6-29 43-66 (387)
499 2dhr_A FTSH; AAA+ protein, hex 95.7 0.0064 2.2E-07 48.6 3.1 20 10-29 67-86 (499)
500 3lv8_A DTMP kinase, thymidylat 95.7 0.0062 2.1E-07 43.8 2.8 23 7-29 27-49 (236)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.2e-40 Score=239.50 Aligned_cols=168 Identities=33% Similarity=0.492 Sum_probs=143.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+-+.+||+|+|++|||||||+++++.+.+...+.||.+ +........++..+.+++|||+|++++..++..++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34579999999999999999999999999999999988 45566777888999999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|||++++.++..+..|+..+..... ++.|++||+||+|+.+.+++...++..+++..+++|++|||++|.||+
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~-----~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHT-----TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcC-----CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence 999999999999999999999988773 678999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|+.|.+.+....
T Consensus 165 e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 165 QLFRRVAAALPGME 178 (216)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999875443
No 2
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-37 Score=220.70 Aligned_cols=196 Identities=74% Similarity=1.156 Sum_probs=151.7
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
|++.+..++|+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+|||||++.+..++..++..+|
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 67788899999999999999999999999888777888887777767777888899999999999999999999999999
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCc
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHN 160 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~ 160 (200)
++++|+|++++.++..+..|+..+..... ..+..|+++|+||+|+.+ .+....+...+....+++++++||++|.|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKG---SVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYN 157 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHS---CGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 99999999999999999999888877653 124689999999999975 44456667777888899999999999999
Q ss_pred HHHHHHHHHHHHhccchhHHHhhh--cccccccccCCccccC
Q psy8700 161 VKELFAELLNLEKNRNISLQLEKK--GQLKGTRKLKEKCSVM 200 (200)
Q Consensus 161 i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~~ 200 (200)
++++|++|.+.+.++........+ ...+.+++++++|+||
T Consensus 158 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~C~~~ 199 (199)
T 2gf0_A 158 VKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 199 (199)
T ss_dssp HHHHHHHHHHHCSSSCEECC----------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCccccCCCCceeeC
Confidence 999999999999877665544433 2222223445567765
No 3
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=3.4e-36 Score=212.28 Aligned_cols=188 Identities=35% Similarity=0.644 Sum_probs=151.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
+..+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999998887788888877777777788888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|++++.++..+..|+..+..... ....|+++|+||+|+.+ ..........+....+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKD----SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTT----CSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999998888663 46789999999999974 344566777888888999999999999999999
Q ss_pred HHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700 165 FAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200 (200)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 200 (200)
|++|.+.+.++..... ....+++++++.+|+||
T Consensus 157 ~~~l~~~~~~~~~~~~---~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 157 FYTLVREIRKHKEKMS---KDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp HHHHHHHHHHHHHHHH---HCSSTTCCC--------
T ss_pred HHHHHHHHHHhhhhcc---cccccccccccceeeeC
Confidence 9999999876654332 23334444556778875
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=213.03 Aligned_cols=169 Identities=34% Similarity=0.565 Sum_probs=150.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+.+.++|+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999999888778888887776667777888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+..... ....|+++|+||+|+.+..+....+...+....+++++++||++|.|+++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 166 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTT----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 99999999999999999988887662 35789999999999988777777778888888899999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy8700 164 LFAELLNLEKNRN 176 (200)
Q Consensus 164 ~~~~i~~~~~~~~ 176 (200)
+|++|.+.+.++.
T Consensus 167 l~~~l~~~i~~~~ 179 (206)
T 2bov_A 167 VFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999887654
No 5
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.6e-34 Score=206.76 Aligned_cols=174 Identities=29% Similarity=0.439 Sum_probs=151.2
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
..+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 356679999999999999999999999988777777777444 4566678888999999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...+....+++++++||++|.|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYA-----TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999988887765 256899999999999887777777777888888999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHH
Q psy8700 162 KELFAELLNLEKNRNISLQL 181 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~ 181 (200)
+++|++|.+.+.++......
T Consensus 159 ~~l~~~l~~~i~~~~~~~~~ 178 (206)
T 2bcg_Y 159 EDAFLTMARQIKESMSQQNL 178 (206)
T ss_dssp HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 99999999998776655443
No 6
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=210.01 Aligned_cols=168 Identities=35% Similarity=0.617 Sum_probs=143.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999999988888888876666666667777899999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHG----KTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC---------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999888876542 356899999999999888888888888899999999999999999999999
Q ss_pred HHHHHHHHhccc
Q psy8700 165 FAELLNLEKNRN 176 (200)
Q Consensus 165 ~~~i~~~~~~~~ 176 (200)
|++|.+.+.+..
T Consensus 178 ~~~l~~~i~~~~ 189 (201)
T 3oes_A 178 FTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhh
Confidence 999999885543
No 7
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4e-34 Score=200.89 Aligned_cols=167 Identities=34% Similarity=0.593 Sum_probs=151.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++.++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45679999999999999999999999888888888888777777778888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc-CCCcHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK-TNHNVK 162 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~-~~~~i~ 162 (200)
+|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.+.....+...++...+++++++||+ ++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKD----RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT----SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 99999999999999999988877653 4678999999999998878888888888999999999999999 999999
Q ss_pred HHHHHHHHHHhc
Q psy8700 163 ELFAELLNLEKN 174 (200)
Q Consensus 163 ~~~~~i~~~~~~ 174 (200)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 8
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.1e-34 Score=201.10 Aligned_cols=170 Identities=36% Similarity=0.573 Sum_probs=150.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+...+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+|||||++.+..+...++..+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 34689999999999999999999998888888888888777777778888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+.+.....+...++...+++++++||++|.|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVG----KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHH
Confidence 99999999999999999988877653 45689999999999988888888888999999999999999999999999
Q ss_pred HHHHHHHHHhccch
Q psy8700 164 LFAELLNLEKNRNI 177 (200)
Q Consensus 164 ~~~~i~~~~~~~~~ 177 (200)
+|+++.+.+..++.
T Consensus 159 l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 159 VFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998876553
No 9
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-34 Score=207.21 Aligned_cols=167 Identities=28% Similarity=0.501 Sum_probs=142.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999998888888888887777677778888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc--------cCHHHHHHHHHHhCC-cEEEec
Q psy8700 85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENRE--------VSAAEGEAEAKMWGC-HFMETS 154 (200)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~vS 154 (200)
|+|++++.++..+. .|+..+.... ++.|++||+||+|+.+... +...+...+....++ +++++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA------PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC------TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 99999999999987 6776666543 4689999999999976543 255667777888886 999999
Q ss_pred ccCCCcHHHHHHHHHHHHhccch
Q psy8700 155 AKTNHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~~~ 177 (200)
|++|.|++++|+++.+.+.+...
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHHHHHhhhhh
Confidence 99999999999999998876543
No 10
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8.1e-34 Score=198.70 Aligned_cols=170 Identities=35% Similarity=0.577 Sum_probs=150.4
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+....+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45678999999999999999999999998878888888776666677788889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+..+....+...+....+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKD----RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHT----SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999999999999988866552 4668999999999998877777777888888889999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|++|.+.+.+..
T Consensus 161 ~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 161 EAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886543
No 11
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-34 Score=198.17 Aligned_cols=168 Identities=83% Similarity=1.245 Sum_probs=147.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+.+||+++|++|||||||+++|.+..+...+.++.+..+......++..+.+.+|||||++.+..+...++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57999999999999999999999988877788888777777777788888999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+..... ..+..|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~---~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKG---DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhC---CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHH
Confidence 999999999999999988887653 23568999999999998777777777778888889999999999999999999
Q ss_pred HHHHHHHhccc
Q psy8700 166 AELLNLEKNRN 176 (200)
Q Consensus 166 ~~i~~~~~~~~ 176 (200)
++|.+.+..++
T Consensus 159 ~~l~~~~~~~~ 169 (172)
T 2erx_A 159 QELLNLEKRRT 169 (172)
T ss_dssp HHHHHTCCSSC
T ss_pred HHHHHHHhhhh
Confidence 99999775543
No 12
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=201.29 Aligned_cols=171 Identities=32% Similarity=0.471 Sum_probs=149.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 45579999999999999999999999888777777776444 45667788889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+..... ...|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYAS-----ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-----CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 999999999999999999988877763 568999999999998888777788888899999999999999999999
Q ss_pred HHHHHHHHHHhccchhH
Q psy8700 163 ELFAELLNLEKNRNISL 179 (200)
Q Consensus 163 ~~~~~i~~~~~~~~~~~ 179 (200)
++|++|.+.+.++....
T Consensus 168 ~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 168 QSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999987765543
No 13
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.6e-33 Score=194.71 Aligned_cols=165 Identities=34% Similarity=0.570 Sum_probs=145.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+.+||+++|++|||||||++++.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46999999999999999999999988877777877766666677788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+..... ....|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHC----CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 999999999999999988888773 3578999999999998877777777888888889999999999999999999
Q ss_pred HHHHHHHhc
Q psy8700 166 AELLNLEKN 174 (200)
Q Consensus 166 ~~i~~~~~~ 174 (200)
+++.+.+.+
T Consensus 159 ~~l~~~i~~ 167 (168)
T 1u8z_A 159 FDLMREIRA 167 (168)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998754
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.3e-33 Score=195.14 Aligned_cols=164 Identities=43% Similarity=0.804 Sum_probs=145.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+|||||++.+..++..++.++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999988877788887766666677788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccCCCcHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~~ 164 (200)
+|++++.++..+..|+..+..... ....|+++|+||+|+.+.......+...+.... +++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKD----TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHC----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC----cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence 999999999999999988887663 467899999999999887777777777777776 789999999999999999
Q ss_pred HHHHHHHHh
Q psy8700 165 FAELLNLEK 173 (200)
Q Consensus 165 ~~~i~~~~~ 173 (200)
|++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998763
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=201.88 Aligned_cols=167 Identities=31% Similarity=0.415 Sum_probs=146.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+++|||||++.+..+...++..+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 34569999999999999999999999888777777776333 45666788889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+..+....+...++...+++++++||++|.|++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYA-----SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999988887765 2568999999999998777777777788888889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|+++.+.+.++
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 16
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.7e-33 Score=194.40 Aligned_cols=164 Identities=49% Similarity=0.827 Sum_probs=146.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+++|++|||||||++++.++.+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999988877777777766667777788888999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+..... ....|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKR----YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTT----TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHH
Confidence 999999999999999988887663 4578999999999998777777777788888889999999999999999999
Q ss_pred HHHHHHHh
Q psy8700 166 AELLNLEK 173 (200)
Q Consensus 166 ~~i~~~~~ 173 (200)
++|.+.+.
T Consensus 158 ~~l~~~~~ 165 (167)
T 1kao_A 158 AEIVRQMN 165 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.3e-33 Score=200.14 Aligned_cols=168 Identities=24% Similarity=0.475 Sum_probs=145.8
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.....+||+++|++|+|||||+++|.+..+...+.++.+..+......++..+.+++|||||++.+..++..++.++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34567999999999999999999999999888888888877777777888889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc--cccCHHHHHHHHHHhCCc-EEEecccCC
Q psy8700 83 ILVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN--REVSAAEGEAEAKMWGCH-FMETSAKTN 158 (200)
Q Consensus 83 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~vSa~~~ 158 (200)
++|+|++++.++..+ ..|...+.... ++.|+++|+||+|+.+. ......+...++...+++ ++++||++|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI------DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC------TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 999999999999997 55655555433 56899999999999753 556677788888889987 999999999
Q ss_pred CcHHHHHHHHHHHHhccc
Q psy8700 159 HNVKELFAELLNLEKNRN 176 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~~~~ 176 (200)
.|++++|+++.+.+.++.
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999886554
No 18
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3e-33 Score=196.74 Aligned_cols=168 Identities=34% Similarity=0.567 Sum_probs=148.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+.+.+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 44579999999999999999999999888777888877777666777888889999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+..... ....|+++|+||+|+.+..+....+...+....+++++++||+++.|+++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHC----CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 99999999999999999988888773 35789999999999987777777778888888899999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8700 164 LFAELLNLEKNR 175 (200)
Q Consensus 164 ~~~~i~~~~~~~ 175 (200)
+|++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 19
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=195.20 Aligned_cols=167 Identities=36% Similarity=0.500 Sum_probs=131.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--ChhhHhhccccCCEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--FPAMQRLSISKGHAF 82 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~~~~ 82 (200)
...+||+++|++|||||||+++|.+..+...+.+.....+...+..++..+.+.+|||||++. +..+...++..++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999887654443333344455667788888999999999887 677888899999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.++....+...++...+++++++||++|.|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQ----ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVA 157 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC--------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhc----cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 999999999999999998887776531 3568999999999998777777777777888889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|++|.+.+..+
T Consensus 158 ~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 158 ELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987543
No 20
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=198.34 Aligned_cols=168 Identities=31% Similarity=0.484 Sum_probs=142.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+...+||+++|++|||||||+++|++..+...+.++....+......++..+.+++|||||++.+..+ ..++.++|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45679999999999999999999999988888888888776666777888899999999999988775 56889999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc-cCCCcHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA-KTNHNVK 162 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~~i~ 162 (200)
+|||++++.++..+..|+..+...... .....|+++|+||+|+.+.+.+...+...++...+++++++|| ++|.|++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKE--TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHH--HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhc--cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999998888775310 0145899999999999877777778888888999999999999 8999999
Q ss_pred HHHHHHHHHHhc
Q psy8700 163 ELFAELLNLEKN 174 (200)
Q Consensus 163 ~~~~~i~~~~~~ 174 (200)
++|+.|.+.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.1e-33 Score=194.77 Aligned_cols=166 Identities=31% Similarity=0.498 Sum_probs=138.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..+...++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999888777777776444 35666778889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+..... ...|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLG-----NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHG-----GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-----CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999999999999888776652 558999999999998877777777888888889999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy8700 163 ELFAELLNLEKN 174 (200)
Q Consensus 163 ~~~~~i~~~~~~ 174 (200)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 22
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.3e-33 Score=195.11 Aligned_cols=165 Identities=32% Similarity=0.470 Sum_probs=123.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
+.+||+++|++|||||||++++.+.... ...++.+.++......++..+.+.+|||||++.+..+...++..+|++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 3689999999999999999999875543 333444455556667788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQ----TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC-------CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Confidence 999999999999999988877542 4678999999999998888888888888888999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy8700 166 AELLNLEKNR 175 (200)
Q Consensus 166 ~~i~~~~~~~ 175 (200)
+++.+.+.++
T Consensus 156 ~~l~~~~~~~ 165 (166)
T 3q72_A 156 EGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 23
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.1e-33 Score=203.67 Aligned_cols=168 Identities=23% Similarity=0.380 Sum_probs=144.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+|||+|++.+..++..++.++|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 45679999999999999999999999998888888888777777777888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-c
Q psy8700 84 LVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-H 149 (200)
Q Consensus 84 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 149 (200)
+|+|++++.++.. +..|+..+.... ++.|+++|+||+|+.+. +.+...+...++...++ +
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC------PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC------TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 9999999999998 678877777654 56899999999999763 56777888889999999 9
Q ss_pred EEEecccCCCc-HHHHHHHHHHHHhccch
Q psy8700 150 FMETSAKTNHN-VKELFAELLNLEKNRNI 177 (200)
Q Consensus 150 ~~~vSa~~~~~-i~~~~~~i~~~~~~~~~ 177 (200)
|++|||++|.| ++++|+.+.+.+..+..
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999999998 99999999998876544
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=196.77 Aligned_cols=169 Identities=33% Similarity=0.475 Sum_probs=145.2
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
..+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 356779999999999999999999999887777777766444 4566678888999999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+.......+...+....+++++++||++|.|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC------DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC------TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999998888887654 56899999999999887777778888888899999999999999999
Q ss_pred HHHHHHHHHHHhccch
Q psy8700 162 KELFAELLNLEKNRNI 177 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~~ 177 (200)
+++|++|.+.+.+...
T Consensus 159 ~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 159 EEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998865443
No 25
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=200.21 Aligned_cols=167 Identities=31% Similarity=0.397 Sum_probs=139.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4469999999999999999999999888777777766443 456667777899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVK 162 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~ 162 (200)
+|+|++++.++..+..|+..+.... ..+.|++||+||+|+.+.+.....+...++...++ +++++||++|.|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-----GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 9999999999999999988887765 26689999999999987777777778888888899 99999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|++|.+.+.++.
T Consensus 182 ~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 182 EAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886543
No 26
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=5.6e-34 Score=200.12 Aligned_cols=168 Identities=32% Similarity=0.507 Sum_probs=117.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999998877666667666433 34566778889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... .++.|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHA-----SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999888887764 2568999999999998777777777888888899999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|++|.+.+.++.
T Consensus 160 ~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 160 NAFFTLARDIKAKM 173 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886543
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=192.87 Aligned_cols=168 Identities=33% Similarity=0.550 Sum_probs=136.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
.+..+||+++|++|||||||+++|.+..+. ..+.++.+..+. .....++..+.+.+|||||++.+..++..++.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998874 355666664443 344667888999999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|+|++++.++..+..|+..+..... ...|+++|+||+|+.+.......+...+....+++++++||++|.|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-----HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999999888877652 56899999999999887777777778888888999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
+++|+++.+.+.++.
T Consensus 162 ~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 162 DLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886554
No 28
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=8.2e-33 Score=195.29 Aligned_cols=166 Identities=26% Similarity=0.490 Sum_probs=144.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 3468999999999999999999999888777777776444 345566777889999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...+....+++++++||++|.|+++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-----WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999888887764 35689999999999987777777777888888999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8700 164 LFAELLNLEKNR 175 (200)
Q Consensus 164 ~~~~i~~~~~~~ 175 (200)
+|++|.+.+.++
T Consensus 175 l~~~l~~~i~~~ 186 (189)
T 2gf9_A 175 VFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 29
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-33 Score=196.97 Aligned_cols=167 Identities=37% Similarity=0.617 Sum_probs=147.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+...+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++. ...+..++..+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3567999999999999999999999998877888888776666677788889999999999988 888889999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC-cHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVK 162 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~ 162 (200)
+|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.++....+...++...+++++++||++|. |++
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~ 179 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKK----PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNIT 179 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT----TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhC----CCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHH
Confidence 99999999999999999988887663 4678999999999998877777778888888889999999999999 999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|++|.+.+.++
T Consensus 180 ~l~~~l~~~i~~~ 192 (196)
T 2atv_A 180 EIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987543
No 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1e-32 Score=192.60 Aligned_cols=173 Identities=29% Similarity=0.415 Sum_probs=142.5
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 79 (200)
|++.+..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 56778899999999999999999999999888777777776444 45666788889999999999999999999999999
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-HhCCcEEEecccCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-MWGCHFMETSAKTN 158 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~ 158 (200)
|++++|+|++++.++..+..|+..+....... .....|+++|+||+|+. ..+....+...+.. ..+++++++||++|
T Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK-EPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDA 158 (177)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-CTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHcccc-ccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 99999999999999999999998887766311 12568999999999997 44455666666666 56789999999999
Q ss_pred CcHHHHHHHHHHHHhcc
Q psy8700 159 HNVKELFAELLNLEKNR 175 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~~~ 175 (200)
.|++++|+++.+.+.+.
T Consensus 159 ~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
No 31
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=7.1e-33 Score=193.54 Aligned_cols=166 Identities=30% Similarity=0.402 Sum_probs=144.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++.++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 34579999999999999999999999888777777766444 45566777889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+..... ...|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTN-----PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999888877653 568999999999998777777777788888889999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy8700 163 ELFAELLNLEKN 174 (200)
Q Consensus 163 ~~~~~i~~~~~~ 174 (200)
++|+++.+.+.+
T Consensus 167 ~l~~~l~~~i~~ 178 (179)
T 1z0f_A 167 DAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987743
No 32
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=5.1e-33 Score=197.40 Aligned_cols=169 Identities=31% Similarity=0.446 Sum_probs=139.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh-hHhhccccCCE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA-MQRLSISKGHA 81 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ 81 (200)
++..+||+++|++|||||||+++|.+......+.++.+ ..+...+.+++..+.+.+|||+|++.+.. +...++..+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 45679999999999999999999975443323334443 44455667788889999999999987765 77888999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.+.+...+...++...+++++++||++|.|+
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRP----HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHST----TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 9999999999999999999988776552 346899999999999877777777778888888999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
+++|+++.+.+.++.
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 33
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.2e-33 Score=197.12 Aligned_cols=167 Identities=34% Similarity=0.461 Sum_probs=142.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 45569999999999999999999999888777677666444 45666788889999999999999999899999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+..+....+...++...+++++++||++|.|++
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~-----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHS-----SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999988887765 3568999999999998777777777888888899999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 34
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.3e-33 Score=195.58 Aligned_cols=164 Identities=20% Similarity=0.320 Sum_probs=139.5
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
++...+||+++|++|||||||+++++++.+...+.++ ...+...+.+++..+.+++|||+|++.+. ++.++|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 4567899999999999999999999999887777777 44455677788888999999999998766 77789999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC--cccccCHHHHHHHHHHhC-CcEEEecccCCC
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET--ENREVSAAEGEAEAKMWG-CHFMETSAKTNH 159 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~ 159 (200)
++|||++++.++..+..|+..+..... ....|+++|+||+|+. ....+...+...++...+ ++|+++||++|.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRN----ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSC----GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 999999999999999998888776542 3568999999999994 455667777888888886 799999999999
Q ss_pred cHHHHHHHHHHHHhccc
Q psy8700 160 NVKELFAELLNLEKNRN 176 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~ 176 (200)
|++++|+++.+.+.+++
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999876543
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=5.8e-33 Score=192.42 Aligned_cols=165 Identities=32% Similarity=0.443 Sum_probs=131.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc-ccceeEEEEeCCcEEEEEEEeCCCCCCChh-hHhhccccCCEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQFPA-MQRLSISKGHAFIL 84 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~ 84 (200)
.+||+++|++|||||||+++|.+......+.++. ...+...+..++..+.+.+|||||++.+.. +...++.++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998766544433333 345556677788889999999999988765 77778889999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRP----HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHST----TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhccc----CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHH
Confidence 9999999999999999998887662 347899999999999888888888888899999999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy8700 165 FAELLNLEKNR 175 (200)
Q Consensus 165 ~~~i~~~~~~~ 175 (200)
|+++.+.+..+
T Consensus 158 ~~~l~~~i~~~ 168 (169)
T 3q85_A 158 FEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999987543
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=8.5e-33 Score=193.64 Aligned_cols=167 Identities=33% Similarity=0.462 Sum_probs=144.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
+...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999888777767766444 45666777788999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... .+..|+++|+||+|+.+..+....+...+....+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQG-----NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999999999999998888765 2568999999999998777777777888888889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|++|.+.+...
T Consensus 164 ~l~~~l~~~~~~~ 176 (181)
T 2efe_B 164 EIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999977543
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.1e-33 Score=195.64 Aligned_cols=168 Identities=30% Similarity=0.369 Sum_probs=146.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..++.++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 3557999999999999999999999988877777776633 345666777778999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLA-----SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 99999999999999999988877765 2568999999999998777777777788888889999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|+++.+.+.++.
T Consensus 162 ~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 162 EAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886543
No 38
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=5.6e-33 Score=192.20 Aligned_cols=164 Identities=32% Similarity=0.457 Sum_probs=143.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..+...++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999888777777776433 456667777889999999999998888999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+..+....+...+....+++++++||+++.|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV------GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSE 156 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH------CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 9999999999999999888887765 4589999999999987777677777888888899999999999999999
Q ss_pred HHHHHHHHHhc
Q psy8700 164 LFAELLNLEKN 174 (200)
Q Consensus 164 ~~~~i~~~~~~ 174 (200)
+|++|.+.+.+
T Consensus 157 l~~~l~~~~~~ 167 (168)
T 1z2a_A 157 VFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999987754
No 39
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=197.46 Aligned_cols=166 Identities=28% Similarity=0.462 Sum_probs=135.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45679999999999999999999999888777888887666667777888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-c
Q psy8700 84 LVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-H 149 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 149 (200)
+|+|++++.++..+. .|+..+.... +..|+++|+||+|+.+. ......+...++...++ +
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHC------PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS 170 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC------SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence 999999999999987 6776666643 46899999999999753 34556667778888887 9
Q ss_pred EEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 150 FMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 150 ~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
++++||++|.|++++|+++.+.+.+.
T Consensus 171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 171 YIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999987544
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.4e-33 Score=192.53 Aligned_cols=164 Identities=32% Similarity=0.462 Sum_probs=142.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+||+++|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+|||||++.+..++..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4579999999999999999999999888777777766444 445666777899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... .+..|+++|+||+|+.+.......+...+....+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-----SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 9999999999999999988887765 35789999999999987766667777788888899999999999999999
Q ss_pred HHHHHHHHHh
Q psy8700 164 LFAELLNLEK 173 (200)
Q Consensus 164 ~~~~i~~~~~ 173 (200)
+|++|.+.+.
T Consensus 159 l~~~i~~~~~ 168 (170)
T 1r2q_A 159 IFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 41
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=192.11 Aligned_cols=162 Identities=35% Similarity=0.500 Sum_probs=141.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
.+||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++.++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999888777777776444 45566677888999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc---cccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN---REVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. .+....+...++...+++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQA-----SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EecCChHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999988887765 256899999999999765 5566677778888889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy8700 163 ELFAELLNLEK 173 (200)
Q Consensus 163 ~~~~~i~~~~~ 173 (200)
++|++|.+.+.
T Consensus 158 ~l~~~l~~~i~ 168 (170)
T 1ek0_A 158 DVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHHh
Confidence 99999988664
No 42
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2e-32 Score=191.37 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=138.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.++.+.. +.++.+..+...+..++..+.+++|||||++. ..++.++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999988866 67777766677777888889999999999887 457788999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC--cccccCHHHHHHHHHHh-CCcEEEecccCCCcH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET--ENREVSAAEGEAEAKMW-GCHFMETSAKTNHNV 161 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i 161 (200)
|+|++++.++..+..|+..+...... ..+..|+++|+||+|+. ..+.....+...++... +++++++||++|.|+
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGE--GRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCS--SSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 99999999999999988777776531 12568999999999994 34556666777777765 689999999999999
Q ss_pred HHHHHHHHHHHhccch
Q psy8700 162 KELFAELLNLEKNRNI 177 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~~ 177 (200)
+++|+++.+.+.+...
T Consensus 157 ~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 157 DRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998865433
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.3e-33 Score=194.21 Aligned_cols=171 Identities=29% Similarity=0.319 Sum_probs=143.1
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCC-cEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNK-NICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
++...+||+++|++|||||||+++|.+..+...+.++.+ +.....+..++ ..+.+.+|||||++.+..++..++.++|
T Consensus 2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 356789999999999999999999999887666677775 34445566665 5689999999999999999999999999
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
++++|+|++++.++..+..|+..+..... .....| +++|+||+|+.+.......+...+....+++++++||++|.
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSE---ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHH---HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhc---ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 99999999999999999888887776431 011345 89999999998777777777788888889999999999999
Q ss_pred cHHHHHHHHHHHHhccc
Q psy8700 160 NVKELFAELLNLEKNRN 176 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~ 176 (200)
|++++|++|.+.+.+..
T Consensus 159 gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIK 175 (178)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999886543
No 44
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=193.97 Aligned_cols=162 Identities=25% Similarity=0.477 Sum_probs=142.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++++..++..++.++|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 56899999999999999999999998888888888777766777788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEE
Q psy8700 86 YSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFM 151 (200)
Q Consensus 86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 151 (200)
+|++++.++..+. .|+..+.... ++.|+++|+||+|+.+. +.+...+...++...++ +++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYA------PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS------TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 9999999999987 6767676653 46899999999999764 34566677788888887 999
Q ss_pred EecccCCCcHHHHHHHHHHHHh
Q psy8700 152 ETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 152 ~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
++||++|.|++++|++|.+.+.
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-32 Score=190.72 Aligned_cols=164 Identities=31% Similarity=0.482 Sum_probs=143.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+||+++|++|||||||+++|.+..+...+.++.+..+ ......++....+.+|||||++.+..+...++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4579999999999999999999999888777777776444 445667778899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... .+..|+++|+||+|+.+..+....+...+....+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHG-----PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-----CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 9999999999999988888887764 36789999999999988777777777888888899999999999999999
Q ss_pred HHHHHHHHHh
Q psy8700 164 LFAELLNLEK 173 (200)
Q Consensus 164 ~~~~i~~~~~ 173 (200)
+|++|.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 46
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.1e-32 Score=197.07 Aligned_cols=175 Identities=23% Similarity=0.377 Sum_probs=142.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
....+||+++|++|||||||+++|.+..+...+.++.+. .....+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 567899999999999999999999998887777777653 3345666677788999999999999888889999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-HhCCcEEEecccCCCcH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNV 161 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i 161 (200)
++|+|++++.++..+..|+..+....... .....|+++|+||+|+. .......+...+.. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPR-DPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCS-SGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccc-cCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999999888877765210 12458999999999997 34445555666665 56789999999999999
Q ss_pred HHHHHHHHHHHhccchhHH
Q psy8700 162 KELFAELLNLEKNRNISLQ 180 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~ 180 (200)
+++|++|.+.+.++....+
T Consensus 163 ~~l~~~l~~~~~~~~~~~~ 181 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVE 181 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 9999999998876655443
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=7.6e-33 Score=193.41 Aligned_cols=165 Identities=33% Similarity=0.511 Sum_probs=144.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
...+||+++|++|||||||+++|++..+...+.++.+ ......+..++..+.+.+|||||++.+...+..++.++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999999888777777776 344556667888889999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+..... ...|+++|+||+|+.+..+....+...+....+++++++||++|.|+++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERG-----SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-----TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999988877652 5689999999999988777777777888888899999999999999999
Q ss_pred HHHHHHHHHhc
Q psy8700 164 LFAELLNLEKN 174 (200)
Q Consensus 164 ~~~~i~~~~~~ 174 (200)
+|++|.+.+.+
T Consensus 167 l~~~l~~~~~~ 177 (179)
T 2y8e_A 167 LFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=195.32 Aligned_cols=166 Identities=28% Similarity=0.501 Sum_probs=145.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4569999999999999999999999888777777776444 345666778899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...++...+++++++||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-----WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-----CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 9999999999999999888887655 35689999999999988777777778888888899999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8700 164 LFAELLNLEKNR 175 (200)
Q Consensus 164 ~~~~i~~~~~~~ 175 (200)
+|++|.+.+.++
T Consensus 161 l~~~l~~~i~~~ 172 (203)
T 1zbd_A 161 TFERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 49
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=194.53 Aligned_cols=167 Identities=28% Similarity=0.378 Sum_probs=143.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++.++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999999888777777765433 34556677889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHA-----EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999888887776543 3568999999999998776667777788888889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|++|.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 50
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.8e-33 Score=194.93 Aligned_cols=165 Identities=26% Similarity=0.420 Sum_probs=140.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+...+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 56789999999999999999999999888777888887666666677888899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhC-Cc
Q psy8700 84 LVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWG-CH 149 (200)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 149 (200)
+|+|++++.++..+ ..|...+.... +..|+++|+||+|+.+. +.+...+...++...+ ++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 99999999999998 56766666543 56899999999999752 3456667777887777 69
Q ss_pred EEEeccc-CCCcHHHHHHHHHHHHhc
Q psy8700 150 FMETSAK-TNHNVKELFAELLNLEKN 174 (200)
Q Consensus 150 ~~~vSa~-~~~~i~~~~~~i~~~~~~ 174 (200)
|+++||+ ++.|++++|+.+.+.+..
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999987753
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=195.49 Aligned_cols=166 Identities=31% Similarity=0.492 Sum_probs=133.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
....+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34579999999999999999999999887777777766433 45667788889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------ccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE------NREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
++|+|++++.++..+..|+..+.... ....|++||+||+|+.+ ...+...+...++...+++++++||+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 179 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAA-----HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC--------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence 99999999999999999888877655 25689999999999963 34556667778888889999999999
Q ss_pred CCCcHHHHHHHHHHHHhc
Q psy8700 157 TNHNVKELFAELLNLEKN 174 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~ 174 (200)
+|.|++++|++|.+.+.+
T Consensus 180 ~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TCTTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.2e-32 Score=192.62 Aligned_cols=168 Identities=26% Similarity=0.423 Sum_probs=144.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCc---------EEEEEEEeCCCCCCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKN---------ICTLQITDTTGSHQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~D~~G~~~~~~~~ 72 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+..+. .....++. .+.+.+|||||++.+..+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 455799999999999999999999998887777777764443 34445554 7899999999999999999
Q ss_pred hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700 73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME 152 (200)
Q Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
..++.++|++++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.......+...+....++++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY----SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS----SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999999999888877652 356899999999999877777777778888888999999
Q ss_pred ecccCCCcHHHHHHHHHHHHhcc
Q psy8700 153 TSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+||+++.|++++|++|.+.+.++
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988544
No 53
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.9e-32 Score=186.06 Aligned_cols=163 Identities=34% Similarity=0.644 Sum_probs=143.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 86 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 86 (200)
.+||+++|++|||||||++++.+..+...+.++....+......++..+.+.+|||||++.+...+..++..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 58999999999999999999999888777777777666666777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ ..........+....+++++++||++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~----~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKD----SDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHT----CSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999988887763 34689999999999976 44456677778888899999999999999999999
Q ss_pred HHHHHHhc
Q psy8700 167 ELLNLEKN 174 (200)
Q Consensus 167 ~i~~~~~~ 174 (200)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998754
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=196.04 Aligned_cols=166 Identities=31% Similarity=0.462 Sum_probs=136.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..++.++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 4557999999999999999999999988776777776533 345566777788999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccCCCcH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNV 161 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i 161 (200)
++|+|++++.++..+..|+..+.... ....|++||+||+|+.+..+....+...+.... +++++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYA-----SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 99999999999999998888777665 356899999999999877777767777777663 789999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy8700 162 KELFAELLNLEKN 174 (200)
Q Consensus 162 ~~~~~~i~~~~~~ 174 (200)
+++|++|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1e-32 Score=191.19 Aligned_cols=164 Identities=34% Similarity=0.553 Sum_probs=136.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 568999999999999999999999888777777776444 4556667778899999999999988888999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|++++.++..+..|+..+.... ....|+++|+||+|+ ........+...+.+..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-----NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988887765 256899999999999 44445566677788888999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy8700 165 FAELLNLEKNR 175 (200)
Q Consensus 165 ~~~i~~~~~~~ 175 (200)
|++|.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-33 Score=195.66 Aligned_cols=166 Identities=30% Similarity=0.492 Sum_probs=144.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|++..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++..+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 35579999999999999999999999887777777776544 34566677889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHG-----PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 99999999999999999988887765 3568999999999998766677777888888889999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy8700 163 ELFAELLNLEKN 174 (200)
Q Consensus 163 ~~~~~i~~~~~~ 174 (200)
++|++|.+.+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (192)
T 2fg5_A 175 ELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999997754
No 57
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-32 Score=195.99 Aligned_cols=166 Identities=35% Similarity=0.510 Sum_probs=134.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHA 81 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~ 81 (200)
...+||+++|++|||||||+++|.+.. +...+.++..+.+...+.+++..+.+.+|||+|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456999999999999999999998643 333333333344556677788889999999999876 55677788889999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|||++++.++..+..|+..+..... ....|+++|+||+|+.+.+.+...+...++...++++++|||++|.||
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~----~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQ----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGG----GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988877765331 246899999999999877777767777778888999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy8700 162 KELFAELLNLEKN 174 (200)
Q Consensus 162 ~~~~~~i~~~~~~ 174 (200)
+++|+++.+.+..
T Consensus 191 ~elf~~l~~~i~~ 203 (211)
T 2g3y_A 191 KELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997743
No 58
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=198.50 Aligned_cols=171 Identities=27% Similarity=0.358 Sum_probs=138.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4569999999999999999999999888777777776444 345667787889999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... ....|++||+||+|+.+..++...+...+....+++++++||+++.|+++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-----DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-----C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999988887764 25689999999999987777777777888888899999999999999999
Q ss_pred HHHHHHHHHhccchhHH
Q psy8700 164 LFAELLNLEKNRNISLQ 180 (200)
Q Consensus 164 ~~~~i~~~~~~~~~~~~ 180 (200)
+|++|.+.+.++....+
T Consensus 166 l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 166 AFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999998876654443
No 59
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.6e-32 Score=193.76 Aligned_cols=165 Identities=28% Similarity=0.422 Sum_probs=140.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCCh-hhHhhccccCCEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFP-AMQRLSISKGHAF 82 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~ 82 (200)
...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+. .++..++.++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4569999999999999999999999888777777776443 4566677888999999999998887 7888899999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC---C
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN---H 159 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~ 159 (200)
++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+..+....+...++...+++++++||+++ .
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLL----ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCC----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 999999999999999999888887652 466899999999999877777777788888888999999999999 9
Q ss_pred cHHHHHHHHHHHHh
Q psy8700 160 NVKELFAELLNLEK 173 (200)
Q Consensus 160 ~i~~~~~~i~~~~~ 173 (200)
|+.++|++|.+.+.
T Consensus 174 ~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 174 HVEAIFMTLAHKLK 187 (189)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 60
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=198.71 Aligned_cols=166 Identities=27% Similarity=0.491 Sum_probs=146.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..+...++..+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4569999999999999999999999887777777776444 456666777889999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.+.....+...+....+++++++||++|.|+++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYS-----WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999988887755 36789999999999988877788888888999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy8700 164 LFAELLNLEKNR 175 (200)
Q Consensus 164 ~~~~i~~~~~~~ 175 (200)
+|++|.+.+.++
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2e-32 Score=192.47 Aligned_cols=165 Identities=28% Similarity=0.478 Sum_probs=141.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++|||||++.+..++..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45799999999999999999999998887788888877776677778888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cE
Q psy8700 85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HF 150 (200)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 150 (200)
|+|++++.++..+. .|+..+.... +..|+++|+||+|+.+. ..+...+...++...++ ++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS------TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC------CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 99999999999987 5666666543 46899999999999754 34455666777788887 99
Q ss_pred EEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 151 METSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+++||++|.|++++|+++.+.+.+.
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEecCCCccCHHHHHHHHHHHHhcc
Confidence 9999999999999999999987543
No 62
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=197.71 Aligned_cols=165 Identities=27% Similarity=0.493 Sum_probs=122.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 45699999999999999999999998887777787776666667778888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cE
Q psy8700 85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HF 150 (200)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~ 150 (200)
|+|++++.++..+. .|...+.... +..|+++|+||+|+.... .+...+...+++..++ ++
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC------KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC------SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 99999999999987 5666665543 568999999999997653 4455666777888887 99
Q ss_pred EEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 151 METSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+++||++|.|++++|++|.+.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 63
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=198.49 Aligned_cols=167 Identities=30% Similarity=0.400 Sum_probs=135.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999999887777777766433 456667777889999999998888888888999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|++++.++..+..|+..+..... ...|+++|+||+|+.+.......+...++...+++++++||++|.|+++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-----PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-----TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999888877652 5689999999999987777777777888888899999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy8700 164 LFAELLNLEKNRN 176 (200)
Q Consensus 164 ~~~~i~~~~~~~~ 176 (200)
+|++|.+.+.++.
T Consensus 178 l~~~l~~~i~~~~ 190 (200)
T 2o52_A 178 AFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886543
No 64
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.2e-31 Score=189.41 Aligned_cols=164 Identities=36% Similarity=0.670 Sum_probs=133.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+++|.+|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 45899999999999999999999988877777777766666777788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~ 165 (200)
+|++++.++..+..|+..+..... ....|+++|+||+|+.+ ......+...+....+++++++||+++.|++++|
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKD----SDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHT----CSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999888877663 35689999999999976 4455667777888889999999999999999999
Q ss_pred HHHHHHHhc
Q psy8700 166 AELLNLEKN 174 (200)
Q Consensus 166 ~~i~~~~~~ 174 (200)
++|.+.+.+
T Consensus 175 ~~l~~~~~~ 183 (190)
T 3con_A 175 YTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 65
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=195.81 Aligned_cols=165 Identities=26% Similarity=0.420 Sum_probs=139.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 35679999999999999999999999988877888877666666677788899999999999999999999999999999
Q ss_pred EEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhC-Cc
Q psy8700 84 LVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWG-CH 149 (200)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 149 (200)
+|+|++++.++..+ ..|...+.... +..|+++|+||+|+.+. +.+...+...+++..+ ++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 99999999999998 56777676543 56899999999999752 3455666777887877 69
Q ss_pred EEEeccc-CCCcHHHHHHHHHHHHhc
Q psy8700 150 FMETSAK-TNHNVKELFAELLNLEKN 174 (200)
Q Consensus 150 ~~~vSa~-~~~~i~~~~~~i~~~~~~ 174 (200)
|+++||+ ++.|++++|+.+.+.+..
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999987753
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=7.4e-32 Score=192.23 Aligned_cols=163 Identities=28% Similarity=0.465 Sum_probs=139.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45689999999999999999999999888788888876666667778888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cE
Q psy8700 85 VYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HF 150 (200)
Q Consensus 85 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 150 (200)
|+|++++.++..+ ..|...+.... +..|+++|+||+|+.+. ......+...++...++ ++
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC------PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS------TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 9999999999998 45666555543 46899999999999765 33455667777778887 89
Q ss_pred EEecccCCCcHHHHHHHHHHHHh
Q psy8700 151 METSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
+++||++|.|++++|++|.+.+.
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=7.1e-32 Score=188.93 Aligned_cols=172 Identities=26% Similarity=0.427 Sum_probs=128.3
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
.+...+||+++|++|||||||+++|++..+...+.++.+ ......+..+ +..+.+.+|||||++.+...+..++..+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 456789999999999999999999999888777777765 3334455555 55689999999999999999999999999
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-cccCHHHHHHHHH-HhCCcEEEecccCC
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-REVSAAEGEAEAK-MWGCHFMETSAKTN 158 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~vSa~~~ 158 (200)
++++|+|++++.++..+..|+..+....... .....|+++|+||+|+... ......+...+.. ..+.+++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVN-SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCS-CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhccc-CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence 9999999999999999999988887765311 1356899999999999643 3445566666666 46679999999999
Q ss_pred CcHHHHHHHHHHHHhcc
Q psy8700 159 HNVKELFAELLNLEKNR 175 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~~~ 175 (200)
.|++++|++|.+.+.++
T Consensus 163 ~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 163 INVDTAFEEIARSALQQ 179 (182)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987544
No 68
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=6e-33 Score=194.58 Aligned_cols=163 Identities=28% Similarity=0.520 Sum_probs=124.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|+|||||++++..+.+...+.++....+......++..+.+++|||||++.+..++..++.++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 56799999999999999999999998887777777765554444456677889999999999999999999999999999
Q ss_pred EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc----------cCHHHHHHHHHHhCC-cEEE
Q psy8700 85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENRE----------VSAAEGEAEAKMWGC-HFME 152 (200)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~ 152 (200)
|+|++++.++..+. .|...+.... +..|+++|+||+|+.+... ....+...+....++ ++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA------PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC------TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999987 5666666543 4689999999999976544 255667778888887 9999
Q ss_pred ecccCCCcHHHHHHHHHHHHh
Q psy8700 153 TSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~ 173 (200)
+||++|.|++++|+++.+.+.
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-31 Score=190.40 Aligned_cols=164 Identities=28% Similarity=0.400 Sum_probs=138.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcE----------------------------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNI---------------------------- 54 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------------- 54 (200)
++..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 46789999999999999999999999888777777776433 3344444433
Q ss_pred ---------EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 55 ---------CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 55 ---------~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
..+.+|||||++.+..+...++..+|++++|+|++++.++..+..|+..+..... .|+++|+||
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-------~piilv~NK 156 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-------YIIILVANK 156 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-------CEEEEEEEC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-------CcEEEEEEC
Confidence 7899999999999999999999999999999999999999999888888776552 899999999
Q ss_pred CCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+| .........+...+....+++++++||++|.|+.++|++|.+.+.++
T Consensus 157 ~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 157 ID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp TT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99 55556666777888888899999999999999999999999987543
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-31 Score=191.30 Aligned_cols=164 Identities=28% Similarity=0.460 Sum_probs=134.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++.++|++++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 46899999999999999999999988877777777766666667788889999999999999999999999999999999
Q ss_pred eeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEE
Q psy8700 86 YSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFM 151 (200)
Q Consensus 86 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 151 (200)
+|++++.++..+ ..|...+.... +..|+++|+||+|+.+. ..+...+...++...++ +++
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKHFC------PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS------TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 999999999998 55666665543 56899999999999764 23455566777777887 899
Q ss_pred EecccCCCcHHHHHHHHHHHHhcc
Q psy8700 152 ETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 152 ~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
++||++|.|++++|++|.+.+..+
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987644
No 71
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.2e-31 Score=189.84 Aligned_cols=168 Identities=35% Similarity=0.498 Sum_probs=132.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHA 81 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~ 81 (200)
...+||+++|++|||||||++++.+.. +...+.++..+.+...+.+++..+.+.+|||+|.+. +..+...+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 457999999999999999999998632 333333323344456677788888999999999776 45567778888999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|||++++.++.....|+..+..... ....|+++|+||+|+...+.....+...++...+++|+++||++|.||
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~----~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQ----TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTT----TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence 9999999999999999999887776542 356899999999999876666666667777788889999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
+++|+++.+.+..+.
T Consensus 160 ~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 160 KELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999875443
No 72
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.4e-32 Score=194.43 Aligned_cols=164 Identities=29% Similarity=0.516 Sum_probs=137.6
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+.+.+||+++|++|||||||+++++.+.+...+.++....+...+..++..+.+.+|||||++.+..+...++.++|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35668999999999999999999999988887888888777777777888889999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc------------cCHHHHHHHHHHhCC-
Q psy8700 83 ILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMWGC- 148 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~- 148 (200)
++|+|++++.++..+. .|...+.... +..|+++|+||+|+.+... ....+...++...++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC------SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 9999999999999987 5666665543 5689999999999976543 556667777888886
Q ss_pred cEEEecccCCCcHHHHHHHHHHHH
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
+++++||++|.|++++|+++.+.+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 699999999999999999998754
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-31 Score=191.82 Aligned_cols=167 Identities=33% Similarity=0.535 Sum_probs=141.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..++|+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999999888777777776444 45666778788999999999999888889999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+ ........+...+....+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-----NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-----TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999888887765 256899999999999 444555666777788889999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy8700 163 ELFAELLNLEKNRN 176 (200)
Q Consensus 163 ~~~~~i~~~~~~~~ 176 (200)
++|++|.+.+.++.
T Consensus 171 ~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 171 EIFFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886543
No 74
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=190.07 Aligned_cols=166 Identities=33% Similarity=0.446 Sum_probs=141.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 468999999999999999999999888777777766444 4556677888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|++++.++..+..|+..+.... .....|+++|+||+|+.+ .+....+...+....+++++++||+++.|++++
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYC----TRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCC----SCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc----CcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999988877766543 235689999999999943 445566777788888999999999999999999
Q ss_pred HHHHHHHHhccc
Q psy8700 165 FAELLNLEKNRN 176 (200)
Q Consensus 165 ~~~i~~~~~~~~ 176 (200)
|++|.+.+.+..
T Consensus 169 ~~~l~~~~~~~~ 180 (195)
T 1x3s_A 169 FEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhhh
Confidence 999999886543
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.7e-32 Score=197.83 Aligned_cols=173 Identities=23% Similarity=0.341 Sum_probs=141.4
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEe-CCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC-NKNICTLQITDTTGSHQFPAMQRLSISKG 79 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 79 (200)
+.+...+||+++|++|||||||+++|++..+...+.++.+..... .... ++..+.+.+|||||++.+..+...++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 456678999999999999999999999888777777776654433 2222 33448999999999999888999999999
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
|++++|+|++++.++..+..|+..+..... ...|+++|+||+|+.+..+........+....+++++++||++|.
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVG-----NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHC-----SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 999999999999999999999988888773 558999999999998877777777777778888999999999999
Q ss_pred cHHHHHHHHHHHHhccchhH
Q psy8700 160 NVKELFAELLNLEKNRNISL 179 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~~~ 179 (200)
|++++|++|.+.+.++....
T Consensus 161 gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp TTTHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHhcccccc
Confidence 99999999999987765443
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=3.1e-32 Score=194.76 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=108.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhC--CCCCCcCCCcc-cceeEEEEeCCc--EEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKG--TFRESYIPTIE-DTYRQVISCNKN--ICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
..+||+++|++|||||||+++|.+. .+...+.++.+ +.....+..++. .+.+.+|||||++.+..++..++.++|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4589999999999999999999988 66666777765 444556666776 889999999999999999999999999
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-ccccCHHHHHHHHHHhCCcEEEecccC-C
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-NREVSAAEGEAEAKMWGCHFMETSAKT-N 158 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~-~ 158 (200)
++++|+|++++.++..+..|+..+...... .....|+++|+||+|+.+ .......+...+....+++++++||++ |
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPD--RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSC--TTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcc--cccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 999999999999999999998888776520 014689999999999987 667777778888888899999999999 9
Q ss_pred CcHHHHHHHHHHHHhccch
Q psy8700 159 HNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~~~~~ 177 (200)
.|++++|++|.+.+.+...
T Consensus 177 ~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 177 KDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999998865543
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.5e-32 Score=196.76 Aligned_cols=167 Identities=27% Similarity=0.461 Sum_probs=138.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCc----------EEEEEEEeCCCCCCChhhHh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKN----------ICTLQITDTTGSHQFPAMQR 73 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~D~~G~~~~~~~~~ 73 (200)
+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++. .+.+.+|||||++.+..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4569999999999999999999999887666666665333 334445554 68999999999999999999
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 153 (200)
.++..+|++++|+|++++.++..+..|+..+.... .....|++||+||+|+.+.......+...+....+++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~----~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA----YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC----TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 99999999999999999999998887765544322 12568999999999998777777777888888889999999
Q ss_pred cccCCCcHHHHHHHHHHHHhcc
Q psy8700 154 SAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~~~ 175 (200)
||+++.|++++|++|.+.+.++
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=1.8e-31 Score=189.65 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=128.2
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
++....+||+|+|++|||||||+++|++..+.. .+.++.+.... .+ +...+.+.+|||||++.+..++..++.++|
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 345677999999999999999999999988877 66777663322 22 345579999999999999999999999999
Q ss_pred EEEEEeeCCChhHHHHHHHHHHHHHHHhCC---CCCCCCCcEEEEeeCCCCCcccccCHHH---HHHH-HHHhCCcEEEe
Q psy8700 81 AFILVYSCTSRQSLEELRPIWEVIRETKGG---ANELASIPIMLVGNKCDETENREVSAAE---GEAE-AKMWGCHFMET 153 (200)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~-~~~~~~~~~~v 153 (200)
++++|+|++++.++..+..|+..+...... .......|++||+||+|+.+........ .... ....+++++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence 999999999999999998888777654210 0001268999999999997653221111 1111 13356789999
Q ss_pred cccCCCcHHHHHHHHHHHHhccc
Q psy8700 154 SAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
||++|.|++++|++|.+.+.++.
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eCCCccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999886543
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2e-33 Score=200.03 Aligned_cols=167 Identities=32% Similarity=0.499 Sum_probs=133.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
.+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35579999999999999999999999887766666666444 45666788888999999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-----SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 184 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC------CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-----cCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999998887776544 3568999999999998776666666777888889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy8700 163 ELFAELLNLEKNR 175 (200)
Q Consensus 163 ~~~~~i~~~~~~~ 175 (200)
++|++|.+.+.++
T Consensus 185 ~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 185 QSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877543
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2e-31 Score=192.62 Aligned_cols=166 Identities=23% Similarity=0.371 Sum_probs=140.4
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
.....+||+++|++|||||||+++++.+.+...+.++.+.+. ......++..+.+.+|||||++.+..++..++.++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 355679999999999999999999887776666677776333 4556678888999999999999999999999999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.... .+...+....+++++++||++|.|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC------ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS------TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999988888765 46899999999999765432 2445567778899999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
.++|++|.+.+....
T Consensus 163 ~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 163 EKPFLWLARKLIGDP 177 (221)
T ss_dssp THHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999886554
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4e-31 Score=187.47 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=126.9
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC-----------Cccccee-EEE-EeCCcEEEEEEEeCCCCCCCh
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-----------TIEDTYR-QVI-SCNKNICTLQITDTTGSHQFP 69 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-----------~~~~~~~-~~~-~~~~~~~~~~~~D~~G~~~~~ 69 (200)
.++..+||+++|++|||||||++.+.+. +...+.+ +.+..+. ... ..++..+.+++|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4566899999999999999999766653 3333322 2221111 112 445677899999999999999
Q ss_pred hhHhhccccCCEEEEEeeCCC------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700 70 AMQRLSISKGHAFILVYSCTS------RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA 143 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 143 (200)
.++..++.++|++++|+|+++ ..++..+..|+..+. ......|+++|+||+|+.+. ....+...+.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~ 160 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG------LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVV 160 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT------CCTTSSCEEEEEECTTSTTC--CCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc------cccCCCCEEEEEEchhcccc--cCHHHHHHHH
Confidence 999999999999999999994 455555555554441 13477999999999999764 4566777778
Q ss_pred HHhCC-cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 144 KMWGC-HFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 144 ~~~~~-~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
...++ +++++||++|.|++++|++|.+.+.++.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 88888 9999999999999999999999886554
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=2.3e-31 Score=183.46 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=120.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 87 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 87 (200)
+||+++|++|||||||++++.++.+.. +.|+.+.. ...+. ...+.+.+|||||++.+..++..++.++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999877643 45555522 22232 344689999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCcHH
Q psy8700 88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~ 162 (200)
+++++++.....|+..+.... ..++.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAED----ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred CCCHHHHHHHHHHHHHHHhch----hhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHH
Confidence 999999999888887766533 135689999999999976432 11111111 1123479999999999999
Q ss_pred HHHHHHHHHHhc
Q psy8700 163 ELFAELLNLEKN 174 (200)
Q Consensus 163 ~~~~~i~~~~~~ 174 (200)
++|++|.+.+.+
T Consensus 151 ~l~~~l~~~i~~ 162 (164)
T 1r8s_A 151 EGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhh
Confidence 999999987643
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=8.7e-31 Score=181.70 Aligned_cols=162 Identities=22% Similarity=0.280 Sum_probs=125.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++.++.+. .+.++.+.. ...+..+ ...+.+|||||++.+..++..++.++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 45799999999999999999999987764 345555422 2333333 4689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH----HHHhCCcEEEecccCCCc
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE----AKMWGCHFMETSAKTNHN 160 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~~~~ 160 (200)
|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+....... ...+ ....+++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEE----ELRKAILVVFANKQDMEQAMTSSEM-ANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCHHHH-HHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHhch----hhCCCEEEEEEECCCCcCCCCHHHH-HHHhCchhccCCceEEEECcCCCCcC
Confidence 999999999998888887665543 1356899999999999765321111 1111 122345899999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy8700 161 VKELFAELLNLEKNR 175 (200)
Q Consensus 161 i~~~~~~i~~~~~~~ 175 (200)
++++|+++.+.+.++
T Consensus 156 i~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 156 LDEAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988654
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3.1e-31 Score=187.09 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=126.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.+..+...+.++.+..+.. ++...+.+.+|||||++.+..++..++.++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 346999999999999999999999988876777776654432 23345789999999999988999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 159 (200)
|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+... ..+...... ..+++++++||++|.
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKP----QLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG----GGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHhCc----ccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 999999999999988887766532 135689999999999976432 111111111 134579999999999
Q ss_pred cHHHHHHHHHHHHhcc
Q psy8700 160 NVKELFAELLNLEKNR 175 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~ 175 (200)
|++++|++|.+.+.++
T Consensus 171 gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 171 NIDITLQWLIQHSKSR 186 (188)
T ss_dssp THHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999977543
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=5.3e-30 Score=182.25 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=118.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ +.+.+|||||++.+..++..++..+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999987763 345555443 34444555 689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-----------------hC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-----------------WG 147 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~ 147 (200)
|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+ .....+....... .+
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDET----IANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGG----GTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcc----cCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCce
Confidence 9999999999999988877765431 35689999999999975 3344444443331 23
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
++++++||++|.|++++|++|.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999998643
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.8e-30 Score=180.75 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=123.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.++.+. .+.++.+.. ...+..++ ..+++|||||++++..++..++.++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999987765 555655533 23333443 689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 159 (200)
|+|+++++++.....|+..+.... .....|+++|+||+|+.+... ..+...... ..+++++++||++|.
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHE----DLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEeCCCHHHHHHHHHHHHHHHhch----hhCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 999999999999988887776543 135689999999999976332 222222221 234589999999999
Q ss_pred cHHHHHHHHHHHHhccch
Q psy8700 160 NVKELFAELLNLEKNRNI 177 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~ 177 (200)
|++++|++|.+.+.....
T Consensus 164 gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 164 GLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp THHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999998865443
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=178.02 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=125.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC-CCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF 82 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 82 (200)
....+||+++|++|||||||+++|.+.. +...+.++.+ .....+..++ ..+.+|||||++.+..++..++.++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3457999999999999999999999877 4455566655 3334444443 6899999999999999999999999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccC
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKT 157 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~ 157 (200)
++|+|++++.++..+..|+..+...... .....|+++|+||+|+.+.. ...+...... ..+++++++||++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDI--KHRRIPILFFANKMDLRDAV--TSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTT--TTSCCCEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhh--ccCCCeEEEEEeCcCcccCC--CHHHHHHHhChhhccCCceEEEEccCCC
Confidence 9999999999999998888877765420 01568999999999997643 2233333322 1356899999999
Q ss_pred CCcHHHHHHHHHHHHh
Q psy8700 158 NHNVKELFAELLNLEK 173 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~ 173 (200)
|.|++++|++|.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999998764
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=5.4e-31 Score=186.52 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=118.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+...+||+++|++|||||||++++.++.+. .+.|+.+. ....+.. ..+.+.+|||||++.+..++..++.++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~-~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE-EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce-eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 356799999999999999999999987764 33444442 2222333 3478999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTN 158 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~ 158 (200)
+|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+... ..+..... ...+++++++||++|
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQED----ELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc----ccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCc
Confidence 9999999999999888887766533 135689999999999976432 11111111 112347999999999
Q ss_pred CcHHHHHHHHHHHHhc
Q psy8700 159 HNVKELFAELLNLEKN 174 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~~ 174 (200)
.|++++|++|.+.+.+
T Consensus 176 ~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 176 TGLYDGLDWLSHELSK 191 (192)
T ss_dssp BTHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987743
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.4e-29 Score=179.01 Aligned_cols=157 Identities=17% Similarity=0.255 Sum_probs=122.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
.+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ +.+.+|||||++.+..++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999987764 345555443 34455555 789999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH------------hCCcEEE
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM------------WGCHFME 152 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~ 152 (200)
|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+ .....+....... .++++++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIA----ELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG----GGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHcch----hhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 999999999999998887776543 135689999999999976 2333333333221 3457999
Q ss_pred ecccCCCcHHHHHHHHHHH
Q psy8700 153 TSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~ 171 (200)
+||++|.|++++|++|.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 9999999999999999764
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.4e-30 Score=179.56 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=126.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
.+.+||+++|++|||||||++++.+.. ...+.|+.+.. ...+..+ ...+++|||||++.+...+..++.++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 578999999999999999999999877 55666666533 2333343 4689999999999988999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 159 (200)
|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+.... .+...... ..+++++++||++|.
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEE----RLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEECcCHHHHHHHHHHHHHHHhCh----hcCCCcEEEEEeCccCCCCCCH--HHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 999999999999888887776543 1356899999999999765322 22111111 234589999999999
Q ss_pred cHHHHHHHHHHHHhcc
Q psy8700 160 NVKELFAELLNLEKNR 175 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~ 175 (200)
|++++|+++.+.+.++
T Consensus 166 gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 166 DLLPGIDWLLDDISSR 181 (186)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988654
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=3.5e-29 Score=191.00 Aligned_cols=164 Identities=28% Similarity=0.483 Sum_probs=141.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...++|+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+|||||++.+..+...++..+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 34689999999999999999999998887788888877777777778888999999999999999999999999999999
Q ss_pred EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cE
Q psy8700 85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HF 150 (200)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 150 (200)
|+|++++.++..+. .|...+.... +..|+++|+||+|+.+. ......+...++...++ ++
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC------TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC------CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 99999999999987 5656665543 36899999999999653 34566677778888887 99
Q ss_pred EEecccCCCcHHHHHHHHHHHHhc
Q psy8700 151 METSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+++||++|.|++++|+.|.+.+..
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999987754
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1e-29 Score=180.49 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEe-CCcEEEEEEEeCCCCCCChhhH---hhccc
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISC-NKNICTLQITDTTGSHQFPAMQ---RLSIS 77 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~D~~G~~~~~~~~---~~~~~ 77 (200)
++...+||+++|++|||||||++++.+... ............ ..... ++..+.+++|||||++.+.... ..++.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 466789999999999999999998877433 222111221111 22223 3566899999999999987777 78999
Q ss_pred cCCEEEEEeeCCCh--hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-------cccCHHHHHHHHH----
Q psy8700 78 KGHAFILVYSCTSR--QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-------REVSAAEGEAEAK---- 144 (200)
Q Consensus 78 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~---- 144 (200)
++|++++|+|++++ +++..+..|+..+... .++.|+++|+||+|+.+. +.+.......++.
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV------NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc------CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 99999999999997 5566666555554332 257899999999998653 2333334455555
Q ss_pred HhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700 145 MWGCHFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 145 ~~~~~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
..+++|+++||++ .|+.++|+.+.+.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 5577999999999 99999999998754
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=6.5e-30 Score=179.32 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=122.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++.+..+ ..+.++.+. ....+..+ .+.+.+|||||++.+...+..++.++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999998754 234444442 23334444 4689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~ 159 (200)
|+|++++.++.....|+..+.... .....|+++|+||+|+.+.... .+..... ...+++++++||++|.
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEE----KLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCG----GGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEECcCHHHHHHHHHHHHHHHhCh----hhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCC
Confidence 999999999999888876665432 1356899999999999765432 1111111 1124579999999999
Q ss_pred cHHHHHHHHHHHHhc
Q psy8700 160 NVKELFAELLNLEKN 174 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~ 174 (200)
|++++|+++.+.+.+
T Consensus 164 gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNA 178 (181)
T ss_dssp THHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987644
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.5e-30 Score=182.47 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=121.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
....+||+++|++|||||||+++|.+..+ ..+.++.+... ..+..++ ..+.+|||||++.+..++..++.++|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45679999999999999999999999877 44555555333 3334443 68999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTN 158 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~ 158 (200)
+|+|++++.++..+..|+..+.... .....|+++|+||+|+.+... ..+..... ...+++++++||++|
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHE----DLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCh----hhCCCeEEEEEECCCcccCCC--HHHHHHHhCcccccCCceEEEEccCCCC
Confidence 9999999999999888887776542 135689999999999976422 22222211 123458999999999
Q ss_pred CcHHHHHHHHHHH
Q psy8700 159 HNVKELFAELLNL 171 (200)
Q Consensus 159 ~~i~~~~~~i~~~ 171 (200)
.|++++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999999764
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.6e-30 Score=182.37 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=125.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
.+.+||+++|++|||||||++++..+.+.. +.|+.+.. ...+..+ ...+.+|||||++.+..++..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999998877643 45555432 2333333 4689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH-----HHHhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE-----AKMWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~ 159 (200)
|+|+++++++.....|+..+.... ...+.|+++|+||+|+.+.... .+.... ....+++++++||++|.
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDED----ELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGD 169 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCS----TTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhh----hcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCCCcc
Confidence 999999999998888876665533 2357899999999999765321 111111 11234579999999999
Q ss_pred cHHHHHHHHHHHHhccc
Q psy8700 160 NVKELFAELLNLEKNRN 176 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~ 176 (200)
|++++++++.+.+.++.
T Consensus 170 gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 170 GLVEGMDWLVERLREQG 186 (189)
T ss_dssp THHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999886543
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=3.2e-32 Score=194.50 Aligned_cols=162 Identities=29% Similarity=0.523 Sum_probs=134.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+++|||||++.+..++..++.++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 56799999999999999999999988887777777776666666667777889999999999999999999999999999
Q ss_pred EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cE
Q psy8700 85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HF 150 (200)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~ 150 (200)
|+|++++.++..+. .|+..+.... ++.|+++|+||+|+.+.. .....+...++...++ ++
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 99999999999887 5555555432 368999999999997543 3333445556666777 89
Q ss_pred EEecccCCCcHHHHHHHHHHHH
Q psy8700 151 METSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
+++||++|.|++++|++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998754
No 97
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=2e-28 Score=174.18 Aligned_cols=164 Identities=30% Similarity=0.383 Sum_probs=138.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
..+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+..+...++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999988776677766533 34567778888999999999999888888888999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~ 164 (200)
|+|+++..++..+..|+..+.... ....|+++++||+|+.+.......++..++...++.++++||+++.|+.++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHA-----DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-----CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999998888877665543 245799999999999877666667778888888999999999999999999
Q ss_pred HHHHHHHHhc
Q psy8700 165 FAELLNLEKN 174 (200)
Q Consensus 165 ~~~i~~~~~~ 174 (200)
|++|.+.+.+
T Consensus 159 ~~~l~~~~~~ 168 (199)
T 2f9l_A 159 FKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.6e-30 Score=180.61 Aligned_cols=161 Identities=20% Similarity=0.301 Sum_probs=121.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|++|||||||++++.++.+ ..+.++.+.. ...+..++ ..+.+|||||++.+...+..++.++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 4455555533 23333443 689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 159 (200)
|+|++++.++..+..|+..+.... .....|+++|+||+|+.+... ..+...... ..+++++++||++|.
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEE----ELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSS----TTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EEECCCHHHHHHHHHHHHHHHcCh----hhCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999999888877665433 136689999999999976432 222222211 123479999999999
Q ss_pred cHHHHHHHHHHHHhcc
Q psy8700 160 NVKELFAELLNLEKNR 175 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~ 175 (200)
|+++++++|.+.+.++
T Consensus 166 gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 166 GITEGLDWLIDVIKEE 181 (183)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999987543
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=1.2e-28 Score=177.11 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=114.7
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCc-EEEEEEEeCCCCCCChh-hHhhcccc
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSHQFPA-MQRLSISK 78 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~ 78 (200)
|..+...+||+++|++|||||||+++|++..+...+.++...... +..++. .+.+.+|||||++.+.. ++..++..
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 78 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS 78 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhh
Confidence 445677899999999999999999999998877666554433322 444543 57899999999998887 78889999
Q ss_pred CCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH--H-HHH-----------
Q psy8700 79 GHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG--E-AEA----------- 143 (200)
Q Consensus 79 ~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~-~~~----------- 143 (200)
+|++++|+|+++.. ++.....+|..+...... .....|+++|+||+|+.+......... . .+.
T Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s 156 (214)
T 2fh5_B 79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA--LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPS 156 (214)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT--STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh--cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccc
Confidence 99999999999854 455555555544333100 135689999999999976543211110 0 000
Q ss_pred --------H-------------Hh--CCcEEEecccCC------CcHHHHHHHHHHH
Q psy8700 144 --------K-------------MW--GCHFMETSAKTN------HNVKELFAELLNL 171 (200)
Q Consensus 144 --------~-------------~~--~~~~~~vSa~~~------~~i~~~~~~i~~~ 171 (200)
. .. +++|++|||++| .||+++|++|.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 157 TLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 01 557999999999 9999999999874
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.7e-30 Score=180.02 Aligned_cols=164 Identities=17% Similarity=0.270 Sum_probs=116.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC--CCCCCcCCCccccee-EEEEe---CCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG--TFRESYIPTIEDTYR-QVISC---NKNICTLQITDTTGSHQFPAMQRLSISKGH 80 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 80 (200)
.+||+++|++|||||||++++.+. .+...+.++.+..+. ..... ++..+.+.+|||+|++.+..+...++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 344445566553332 22222 235678999999999888888888999999
Q ss_pred EEEEEeeCCCh-hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC---HHHHHHHHHHhCCc----EEE
Q psy8700 81 AFILVYSCTSR-QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---AAEGEAEAKMWGCH----FME 152 (200)
Q Consensus 81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~ 152 (200)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+..... ......++...+++ +++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA------SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF 155 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC------TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC------CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence 99999999997 57888888888776543 458999999999997654322 12223344445666 999
Q ss_pred ecccCCC-cHHHHHHHHHHHHhccc
Q psy8700 153 TSAKTNH-NVKELFAELLNLEKNRN 176 (200)
Q Consensus 153 vSa~~~~-~i~~~~~~i~~~~~~~~ 176 (200)
+||+++. ++.++++.|.+.+.+..
T Consensus 156 ~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 156 VNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred EecccCchhHHHHHHHHHHHHhccc
Confidence 9999996 99999999998876543
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=9.4e-28 Score=169.69 Aligned_cols=163 Identities=31% Similarity=0.410 Sum_probs=139.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
+..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+++||++|.+++..+...+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3458999999999999999999999887777777776443 556777888888999999999998888888999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 163 (200)
+|+|.++..++..+..|+..+.... ....|+++++||+|+.+........+..++...++.++++|++++.|+.+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHA-----DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999988888877665543 24579999999999987666667778888888999999999999999999
Q ss_pred HHHHHHHHH
Q psy8700 164 LFAELLNLE 172 (200)
Q Consensus 164 ~~~~i~~~~ 172 (200)
+|+.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.3e-27 Score=165.18 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=110.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh------hhHhhccc--
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP------AMQRLSIS-- 77 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~-- 77 (200)
.++|+++|++|||||||+++|.+..+.....++.. ......+..++ ..+.+|||||+..+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998765444344332 22233344443 589999999988764 44556664
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT 157 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 157 (200)
+++++++|+|.++.+. ...|+..+.. ...|+++|+||+|+........ +...++...+++++++||++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~ 148 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME--------MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAK 148 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH--------TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh--------cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCC
Confidence 7999999999998643 3345544443 2379999999999875544332 35666777889999999999
Q ss_pred CCcHHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNLE 172 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~ 172 (200)
|.|++++|+++.+.+
T Consensus 149 ~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 149 KMGIEELKKAISIAV 163 (165)
T ss_dssp TBSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=4.2e-27 Score=170.76 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=114.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCC------CC---hhhHh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH------QF---PAMQR 73 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~------~~---~~~~~ 73 (200)
.+..++|+++|++|||||||+++|++..+.....+... .......... ...+.+|||||+. .. .....
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 35789999999999999999999998776422222111 1111122222 3689999999983 31 12233
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHHhC--C
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKMWG--C 148 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~ 148 (200)
.++..+|++++|+|++++.++.. ..+...+..... ..+..|+++|+||+|+.+..+.... ....+....+ +
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~l~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTI-KEQINLFYSIKS---VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCH-HHHHHHHHHHHT---CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred HhhccccEEEEEEecccccCcch-HHHHHHHHHHHH---hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 45678899999999999877642 223333333332 1246899999999999876665543 3344555555 7
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhccchhH
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKNRNISL 179 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~ 179 (200)
+++++||++|.|+.++|++|.+.+.+.....
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887665443
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=8.6e-28 Score=181.46 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=126.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--C-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-----hhhHhhccc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTF--R-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-----PAMQRLSIS 77 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~~ 77 (200)
..+||+++|++|||||||++++.++.. . ..+.+|.+..+. ...+++ .+.+.+|||||++.+ ..++..++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999988632 2 234444443332 233333 578999999999877 678888899
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc--ccc----cCHHHHHHHHHHhC---C
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE--NRE----VSAAEGEAEAKMWG---C 148 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~ 148 (200)
++|++++|+|++++.++..+..|...+..... ..++.|+++|+||+|+.+ .+. ....+...++...| +
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~---~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRK---YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH---HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHH---hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 99999999999999999999887666655432 135689999999999976 332 33455667777776 6
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 149 HFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+++++||++ .++.++|..+.+.+....
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred EEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 999999999 899999999988765443
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=6.5e-27 Score=163.19 Aligned_cols=159 Identities=22% Similarity=0.284 Sum_probs=115.8
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA 81 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 81 (200)
.....++|+++|++|||||||+++|.+..+...+.++.... ....+..++. .+.+|||||++.+..++..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 35678999999999999999999999988766665555422 2334455554 67899999999999888899999999
Q ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-------hC--CcEEE
Q psy8700 82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-------WG--CHFME 152 (200)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~ 152 (200)
+++|+|++++....... .+.... ....|+++|+||+|+.+.. .......... ++ +++++
T Consensus 82 ~i~v~d~~~~~~~~~~~----~l~~~~-----~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE----AINHAK-----AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp EEEEEETTCCCCHHHHH----HHHHHG-----GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred EEEEEECCCCCcHHHHH----HHHHHH-----hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEE
Confidence 99999998843222211 122222 2458999999999997632 1111111111 12 47999
Q ss_pred ecccCCCcHHHHHHHHHHHHhcc
Q psy8700 153 TSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+||++|.|++++|++|.+.+...
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999977544
No 106
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=5.1e-27 Score=177.25 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=122.2
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh----------
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP---------- 69 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------- 69 (200)
|++++...|+++|.+|||||||+|+|++..+... ...++.......... +...++.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHH
Confidence 5678889999999999999999999999876421 111222222222222 225689999999986644
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-- 147 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 147 (200)
.....++..+|++++|+|++++.+......|+..+.. ...|+++|+||+|+.............+....+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--------cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCC
Confidence 5666788899999999999998877776665555544 347999999999997444434444555666654
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
.+++++||++|.|++++++.+.+.+.+..
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 68999999999999999999999886543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.1e-28 Score=184.72 Aligned_cols=160 Identities=18% Similarity=0.249 Sum_probs=117.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 85 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 85 (200)
..+||+|+|.+|+|||||+++|.+..+...+ |+.+..+ ..++...+.+.+|||||++.+..+...++..+|++++|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~---~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE---EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE---EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4679999999999999999999987764332 3333222 22233457899999999999999999999999999999
Q ss_pred eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCc
Q psy8700 86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHN 160 (200)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~ 160 (200)
+|++++.++..+..++..+.... ..+..|++||+||+|+.+.... .+..... ...+++++++||++|.|
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~----~~~~~piilV~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAED----ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCH--HHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EECCchHHHHHHHHHHHHHHhhh----ccCCCeEEEEEECccCCcccCH--HHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 99999999999888887766544 2357899999999999765432 1111111 11234699999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy8700 161 VKELFAELLNLEKNR 175 (200)
Q Consensus 161 i~~~~~~i~~~~~~~ 175 (200)
|+++|++|.+.+.++
T Consensus 314 i~el~~~l~~~l~~~ 328 (329)
T 3o47_A 314 LYEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987543
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=179.11 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=118.5
Q ss_pred CCCceEEEEECCC---------CCCHHHHHHHHhh---CCCCCCcCCCc-c-cceeE--------------EEEeCCcEE
Q psy8700 4 QSNDYRVVVFGAG---------GVGKSSLVLRFVK---GTFRESYIPTI-E-DTYRQ--------------VISCNKNIC 55 (200)
Q Consensus 4 ~~~~~ki~~~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~-~~~~~--------------~~~~~~~~~ 55 (200)
.+..+||+++|++ |||||||+++|++ ..+...+.++. + +.... ....++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999998 45555555554 1 11111 111356778
Q ss_pred EEEEEe-----------------------CCCCCCChhhHhhccc---------------------cCCEEEEEeeCCCh
Q psy8700 56 TLQITD-----------------------TTGSHQFPAMQRLSIS---------------------KGHAFILVYSCTSR 91 (200)
Q Consensus 56 ~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 91 (200)
.+++|| ++|++++..++..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 5566666666666776 79999999999998
Q ss_pred --hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCCCcHHHHHHHH
Q psy8700 92 --QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVKELFAEL 168 (200)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~~~~~i 168 (200)
.++..+..|+..+..... ..+.|++||+||+|+.+...+ .+...++.. .+++++++||++|.|++++|++|
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~----~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLA----KTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHH----HTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 899999999888876521 245899999999999765443 344555554 47899999999999999999999
Q ss_pred HHHHh
Q psy8700 169 LNLEK 173 (200)
Q Consensus 169 ~~~~~ 173 (200)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88763
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.2e-27 Score=191.83 Aligned_cols=163 Identities=17% Similarity=0.273 Sum_probs=123.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
...+||+++|.+|||||||+++|.+..+. .+.+|.+..+. .+ +...+.+.+|||||++.+..++..++.++|++++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE-EE--ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE-EE--EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35699999999999999999999998753 33454443322 22 3344689999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNH 159 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~ 159 (200)
|||++++.++..+..|+..+.... .....|++||+||+|+.+... ..+..... ...+++++++||++|.
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~----~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDR----EMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSG----GGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEECcchhHHHHHHHHHHHHhhhh----hcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 999999999999999988776543 235689999999999976432 11111111 1123359999999999
Q ss_pred cHHHHHHHHHHHHhccch
Q psy8700 160 NVKELFAELLNLEKNRNI 177 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~ 177 (200)
||+++|++|.+.+..+..
T Consensus 470 gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 470 GLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp THHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999998865554
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.1e-26 Score=162.06 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=117.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh------hhHhhcc
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP------AMQRLSI 76 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~ 76 (200)
+-..++|+++|++|||||||+++|.+..+.....++.. ......+..++ ..+.+|||||+..+. .+...++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34679999999999999999999998665433344333 22233444443 689999999988764 4556666
Q ss_pred c--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 77 S--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 77 ~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
. .++++++|+|.++. .....|+..+.. ...|+++|+||+|+....... .....+....+++++++|
T Consensus 82 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 82 INEKPDLVVNIVDATAL---ERNLYLTLQLME--------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLS 149 (188)
T ss_dssp HHHCCSEEEEEEEGGGH---HHHHHHHHHHHT--------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECB
T ss_pred hccCCCEEEEEecchhH---HHHHHHHHHHHh--------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEE
Confidence 4 48999999998763 444455544443 347999999999987654433 345667777889999999
Q ss_pred ccCCCcHHHHHHHHHHHHhccc
Q psy8700 155 AKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~~ 176 (200)
|+++.|+.++|+++.+.+.++.
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999887655
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.7e-27 Score=178.71 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=114.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCC---CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh---hHhhccccCCEE
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA---MQRLSISKGHAF 82 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~~ 82 (200)
||+++|+.|||||||++++.++.... .+.+|.+..+.. + +..+.+++|||+|++++.. ....++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 78999999999999999887654322 245565544332 2 2347899999999999864 578899999999
Q ss_pred EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-------ccCHHHHHHHHHH----hCCcEE
Q psy8700 83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-------EVSAAEGEAEAKM----WGCHFM 151 (200)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~----~~~~~~ 151 (200)
|+|+|++++ .......|...+..... ..++.|+++++||+|+.+.. ++...+...+++. .+++||
T Consensus 77 IlV~Ditd~-~~~~~~~l~~~l~~~~~---~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~ 152 (331)
T 3r7w_B 77 VYVIDSQDE-YINAITNLAMIIEYAYK---VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY 152 (331)
T ss_dssp EEECCCSSC-TTHHHHHHHHHHHHHHH---HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred EEEEECCch-HHHHHHHHHHHHHHHhh---cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence 999999997 33333333222222211 13678999999999997642 2333344445553 467999
Q ss_pred EecccCCCcHHHHHHHHHHHHhccchh
Q psy8700 152 ETSAKTNHNVKELFAELLNLEKNRNIS 178 (200)
Q Consensus 152 ~vSa~~~~~i~~~~~~i~~~~~~~~~~ 178 (200)
+|||++ .+|.++|..+.+.+.+....
T Consensus 153 eTSAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred EeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 999997 58999999999988655443
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=8.1e-27 Score=165.09 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=105.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCC----------CCCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTG----------SHQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 72 (200)
.+..++|+++|++|||||||+++|++..+...+.++.+.+.. .....++ .+.+||||| ++.+..+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 456899999999999999999999987754444444443332 2223333 589999999 44555667
Q ss_pred hhccccC---CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH----H
Q psy8700 73 RLSISKG---HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK----M 145 (200)
Q Consensus 73 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~ 145 (200)
..++..+ |++++|+|++++.+..... ++..+.. ...|+++|+||+|+.+..+..... ..... .
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--------~~~p~i~v~nK~Dl~~~~~~~~~~-~~~~~~~~~~ 166 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--------YGIPVIVIATKADKIPKGKWDKHA-KVVRQTLNID 166 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--------TTCCEEEEEECGGGSCGGGHHHHH-HHHHHHHTCC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--------cCCCEEEEEECcccCChHHHHHHH-HHHHHHHccc
Confidence 7777776 9999999999876665532 2233332 347999999999998765433211 12222 2
Q ss_pred hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 146 WGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 146 ~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
.+++++++||++|.|++++|++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999998764
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=6.6e-26 Score=155.51 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=104.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-------ChhhHhhcccc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-------FPAMQRLSISK 78 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ 78 (200)
.||+++|++|+|||||++++.+.... ..+.++...........++. .+.+|||||... +......++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987642 22222222333444444544 789999999876 34556678899
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccC
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKT 157 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~ 157 (200)
+|++++|+|.+++.+... ..+...+.. ...|+++|+||+|+.+..+. ...+. ..++ +++++||++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR--------KGKPVILVATKVDDPKHELY----LGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH--------HTCCEEEEEECCCSGGGGGG----CGGGG-GGSSCSCEECBTTT
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh--------cCCCEEEEEECcccccchHh----HHHHH-hCCCCCeEEEeccc
Confidence 999999999998644322 122222332 23799999999999765321 22223 4566 899999999
Q ss_pred CCcHHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNLE 172 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~ 172 (200)
|.|++++|+++.+.+
T Consensus 146 ~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 146 ARGLEELLEAIWERL 160 (161)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHhC
Confidence 999999999998764
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.2e-26 Score=160.08 Aligned_cols=153 Identities=24% Similarity=0.281 Sum_probs=110.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLS 75 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 75 (200)
..+||+++|++|||||||+++|.+.... ..+.++........+..++. .+.+|||||+..+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 5689999999999999999999986532 22233333444555566654 5899999998754211 1235
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
+..+|++++|+|++++.++.. ..|+..+.... ....|+++|+||+|+.+.... +....+.+++++||
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-----~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA 147 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-----PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSA 147 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-----CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-----ccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeC
Confidence 789999999999998877653 46666666544 246899999999998543210 01124568999999
Q ss_pred cCCCcHHHHHHHHHHHHh
Q psy8700 156 KTNHNVKELFAELLNLEK 173 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~ 173 (200)
++|.|++++|++|.+.+.
T Consensus 148 ~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTCTTHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=2.1e-26 Score=185.91 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=121.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE---------EeCCcEEEEEEEeCCCCCCChhhHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI---------SCNKNICTLQITDTTGSHQFPAMQRL 74 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~D~~G~~~~~~~~~~ 74 (200)
....+||+++|.+|||||||++++++..+...+.++.+..+.... ..++..+.+.+|||||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999998887777777765544321 11234578999999999999999999
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
++..+|++++|+|+++. .....|+..+.... ++.|+++|+||+|+.+................+++++++|
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~------~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG------GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS------SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC------CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence 99999999999998765 45567777777665 4589999999999987777666667777777888999999
Q ss_pred ccCCCcHHHHHHHHHHHHhccc
Q psy8700 155 AKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~~ 176 (200)
|++|.|++++++.+.+.+.+..
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp C-----CTTHHHHHHHHHTCTT
T ss_pred cCcccCHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=4.7e-26 Score=167.84 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=114.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh------hHhhcc--
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA------MQRLSI-- 76 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~-- 76 (200)
.+.++|+++|++|||||||+|+|++..+.....|..... .....+......+.+|||||+..+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE-KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEE-EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 457899999999999999999999877543333332211 12222222346899999999887653 335555
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
..+|++++|+|+++.++.. .|+..+.. ...|+++|+||+|+.+..... .....+....+++++++||+
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~--------~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~ 149 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE--------MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSV 149 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT--------TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTT
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh--------cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEee
Confidence 5899999999999875432 34444432 348999999999987655443 23567778889999999999
Q ss_pred CCCcHHHHHHHHHHHHh
Q psy8700 157 TNHNVKELFAELLNLEK 173 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~ 173 (200)
+|.|+.++|+.+.+.+.
T Consensus 150 ~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 150 TGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 99999999999999775
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=1.5e-26 Score=162.98 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=110.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCC-----------CCCChhhHhhcc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG-----------SHQFPAMQRLSI 76 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~ 76 (200)
+||+++|++|||||||++++.+..+...+.++..... ...... .+.+||||| ++.+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999887666666544222 222222 589999999 344556666677
Q ss_pred cc-CCEEEEEeeCCChhHHHHH-HHHHHH--------HHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh
Q psy8700 77 SK-GHAFILVYSCTSRQSLEEL-RPIWEV--------IRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW 146 (200)
Q Consensus 77 ~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 146 (200)
.. ++++++++++.+..++..+ ..|... +..... ....|+++|+||+|+.... ......+....
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~ 149 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR----ELDIPTIVAVNKLDKIKNV---QEVINFLAEKF 149 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTCCEEEEEECGGGCSCH---HHHHHHHHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH----hcCCceEEEeehHhccCcH---HHHHHHHHHHh
Confidence 66 6666666666666677665 333321 112110 2458999999999997654 34456666777
Q ss_pred CCc-------EEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 147 GCH-------FMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 147 ~~~-------~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+.+ ++++||++|.|++++|+++.+.+.+..
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 764 799999999999999999999875543
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=6e-26 Score=168.22 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=113.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh------hhHhhccc--
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP------AMQRLSIS-- 77 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~-- 77 (200)
..++|+++|++|||||||+|+|++........|..... .....++. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 46899999999999999999999865332222322211 22333444 5579999999988765 45566665
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT 157 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 157 (200)
.+|++++|+|+++.++. ..|...+.+ ...|+++++||+|+....... .....+....+++++++||++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--------~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~ 147 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--------TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALK 147 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--------TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTT
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--------cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccC
Confidence 59999999999886543 344444443 248999999999987654433 345667778899999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q psy8700 158 NHNVKELFAELLNLEK 173 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~ 173 (200)
|.|++++|+++.+.+.
T Consensus 148 g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TBSHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.5e-25 Score=158.37 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=107.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-EEeCCcEEEEEEEeCCC----------CCCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQITDTTG----------SHQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G----------~~~~~~~~ 72 (200)
++..+||+++|++|||||||+++|++... ..+.++.+.+.... ...+. .+.+||||| .+.+..+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 46679999999999999999999998763 23333333332222 22232 478999999 44455666
Q ss_pred hhccccC---CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH--HHHHHHHHH-h
Q psy8700 73 RLSISKG---HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA--AEGEAEAKM-W 146 (200)
Q Consensus 73 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~-~ 146 (200)
..++..+ +++++|+|.++..+.... .++..+... ..|+++|+||+|+.+..+... .....+... .
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~--------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL--------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT--------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc--------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 6677665 999999998875433332 222223322 379999999999976443222 223333333 3
Q ss_pred CCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 147 GCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 147 ~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+++++++||++|.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3699999999999999999999998754
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.8e-25 Score=163.47 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=110.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh----------hHhhcc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA----------MQRLSI 76 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 76 (200)
.+|+++|.+|||||||+|+|.+........|+.. +.....+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998765433334333 222334444444 899999999877653 556666
Q ss_pred --ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 77 --SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 77 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
.++|++++|+|+++.++...+..+ +. ....|+++|+||+|+....... .....+....+++++++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~--------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~S 147 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF--------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQ 147 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT--------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH--------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEE
Confidence 889999999999986554332222 22 1358999999999987654332 224456777899999999
Q ss_pred ccCCCcHHHHHHHHHHH
Q psy8700 155 AKTNHNVKELFAELLNL 171 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~ 171 (200)
|++|.|++++++++.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGGTBSHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999886
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=3.5e-25 Score=166.47 Aligned_cols=160 Identities=24% Similarity=0.286 Sum_probs=110.2
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCC-CcccceeEEEEeCCcEEEEEEEeCCCCCC--------Chh
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TIEDTYRQVISCNKNICTLQITDTTGSHQ--------FPA 70 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~ 70 (200)
||+.-...+|+++|.+|||||||+|+|++..+.. ...+ ++......... ....++.+|||||+.. +..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHH
Confidence 6777778899999999999999999999877632 1222 22222222222 2346899999999876 345
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hC-
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WG- 147 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~- 147 (200)
....++..+|++++|+|++++.+... .|+ ..+... .+..|+++|+||+|+.+.... ....... .+
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~------~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~ 146 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL------VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPE 146 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG------TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTT
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh------cCCCCEEEEEECcccCCchHH----HHHHHHHhcCc
Confidence 56678899999999999988654332 333 333322 135899999999999754330 1111122 23
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 148 CHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.+++++||++|.|++++++.+.+.+.+
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 478999999999999999999987643
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=2.8e-25 Score=165.19 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=112.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh----------hhHhhc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP----------AMQRLS 75 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~ 75 (200)
.++|+++|.+|||||||+|+|++..+.....++.. ......+...+ ..+.+|||||+..+. .....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 68999999999999999999998765333333332 22233344444 468899999987765 223333
Q ss_pred c--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700 76 I--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET 153 (200)
Q Consensus 76 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 153 (200)
+ ..+|++++|+|+++.++.. .+...+.+.. .|+++|+||+|+.+..... .....+....+++++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~~--------~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL---YLTLQLLELG--------IPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHHT--------CCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEEC
T ss_pred HhhcCCCEEEEEecCCChHHHH---HHHHHHHhcC--------CCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEE
Confidence 3 6899999999999865433 3333444433 7999999999986544322 23456677789999999
Q ss_pred cccCCCcHHHHHHHHHHHHhcc
Q psy8700 154 SAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~~~ 175 (200)
||++|.|++++++.|.+.+...
T Consensus 149 SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 149 VSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CCGGGHHHHHHHHHHHTCCCCC
T ss_pred EcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999877543
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=1.1e-24 Score=161.91 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=115.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEeCCcEEEEEEEeCCCCCCChh------hHhhcc--c
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCNKNICTLQITDTTGSHQFPA------MQRLSI--S 77 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~ 77 (200)
.++|+++|++|||||||+|+|++..+.....++... .........+. .+.+|||||+..+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999987664344444332 22333444443 699999999887655 555566 6
Q ss_pred cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700 78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT 157 (200)
Q Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 157 (200)
++|++++|+|.++.. ....++..+... ...|+++|+||+|+.+...... ....+.+..+++++++||++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~ 149 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM-------EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKK 149 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT-------TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGG
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc-------CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCC
Confidence 799999999998863 233444444332 2279999999999865443332 25667778899999999999
Q ss_pred CCcHHHHHHHHHHHHhcc
Q psy8700 158 NHNVKELFAELLNLEKNR 175 (200)
Q Consensus 158 ~~~i~~~~~~i~~~~~~~ 175 (200)
|.|+.++++.+.+.+...
T Consensus 150 g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 150 GEGVEELKRMIALMAEGK 167 (271)
T ss_dssp TBTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999987544
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=5.3e-25 Score=158.97 Aligned_cols=164 Identities=14% Similarity=0.075 Sum_probs=106.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeC-CcEEEEEEEeCCCCCC----------Chhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCN-KNICTLQITDTTGSHQ----------FPAM 71 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~G~~~----------~~~~ 71 (200)
.+..++|+++|.+|||||||+|+|++........+..+.+.. ...... .....+.+|||||... +..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 456799999999999999999999987621111111111111 122223 3345799999999543 2455
Q ss_pred Hhhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHH
Q psy8700 72 QRLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKM 145 (200)
Q Consensus 72 ~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~ 145 (200)
...++.. +|++++|+|.+++.+... ..++..+.. ...|+++|+||+|+.+..+..... ...+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~--------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP--------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG--------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh--------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 5566665 788999999987543222 233333332 347999999999997654422111 1122222
Q ss_pred ------hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 146 ------WGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 146 ------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
.+.+++++||++|.|+.+++++|.+.+....
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4468999999999999999999999886543
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2e-24 Score=170.37 Aligned_cols=161 Identities=20% Similarity=0.232 Sum_probs=111.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCC----------CCChhhH
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGS----------HQFPAMQ 72 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~ 72 (200)
+..+||+++|.+|||||||+|+|++.... ..+..++.+.....+..++. .+.+|||||+ +.+..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 46799999999999999999999987642 22222332333344455554 5899999996 3333333
Q ss_pred h-hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HH----HHHh
Q psy8700 73 R-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AE----AKMW 146 (200)
Q Consensus 73 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~ 146 (200)
. .++..+|++++|+|++++.+.++. .|+..+.. ...|+++|+||+|+.+.......+.. .. ....
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC
Confidence 3 478889999999999998887774 45544443 34899999999999865543222221 11 2223
Q ss_pred CCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 147 GCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 147 ~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+++++++||++|.|+.++|+.+.+.+..+.
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 679999999999999999999999886543
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=5e-24 Score=168.81 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=98.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhH--------hhcc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQ--------RLSI 76 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~ 76 (200)
.++|+++|++|||||||+|+|++... ...+..++.+.....+..++ ..+.+|||||+..+.... ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 58999999999999999999998642 22222333333344455554 479999999987655333 4478
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
..+|++++|+|++++.++.....+...+... .+.|+++|+||+|+.+..... ...+......+++++||+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-------~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAk 380 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH-------PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISAL 380 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-------TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc-------CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEEC
Confidence 8999999999999988775443433333322 248999999999997655431 122333334789999999
Q ss_pred CCCcHHHHHHHHHHHHh
Q psy8700 157 TNHNVKELFAELLNLEK 173 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~ 173 (200)
+|.|+++++++|.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999999886
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=5.4e-25 Score=158.44 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=104.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC---cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcccc--
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES---YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK-- 78 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~-- 78 (200)
+...++|+++|++|+|||||+++|.+..+... +.++... +.....+.+|||||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--------TGGGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--------EeeCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 45679999999999999999999998775432 2222221 1134579999999999998888888877
Q ss_pred --CCEEEEEeeCC-ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------HHHHHHHHHHhCCc
Q psy8700 79 --GHAFILVYSCT-SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------AAEGEAEAKMWGCH 149 (200)
Q Consensus 79 --~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 149 (200)
++++++|+|++ ++.++.....|+..+...... ......|+++|+||+|+.+..... ..+...+....+++
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES-SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH-HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccc-cccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888888777654310 002568999999999998765433 23344555566778
Q ss_pred EEEecccCCCc
Q psy8700 150 FMETSAKTNHN 160 (200)
Q Consensus 150 ~~~vSa~~~~~ 160 (200)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998874
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=4.6e-24 Score=169.16 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=114.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCC----------CCCChhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTG----------SHQFPAM 71 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~ 71 (200)
....++|+++|.+|+|||||+++|++... ...+..++.+.....+..++. .+.+||||| ++.+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35679999999999999999999997542 223333333333444555554 799999999 4555555
Q ss_pred Hh-hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh----
Q psy8700 72 QR-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW---- 146 (200)
Q Consensus 72 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---- 146 (200)
.. .++..+|++++|+|++++..... ..++..+.. ...|+++|+||+|+.+..+....+........
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~--------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE--------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH--------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence 44 37789999999999988654332 344444443 33899999999999876554444444444433
Q ss_pred -CCcEEEecccCCCcHHHHHHHHHHHHhccch
Q psy8700 147 -GCHFMETSAKTNHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 147 -~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~ 177 (200)
+++++++||++|.|+.++|+.+.+.+..+..
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999998865543
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=5.4e-23 Score=158.30 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=116.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh---------hhHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP---------AMQRL 74 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~ 74 (200)
...++|+++|++|||||||+++|.+........+... .......... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 5678999999999999999999998664222112111 1111222222 3579999999975421 12224
Q ss_pred ccccCCEEEEEeeCCChh--HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700 75 SISKGHAFILVYSCTSRQ--SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME 152 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
+...+|++++|+|++++. ++.....|+..+.... ...|+++|+||+|+.+.... .....+....++++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~------~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 314 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF------KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIK 314 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT------TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc------CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEE
Confidence 455689999999998876 6677777777776654 25899999999999765432 2334445567889999
Q ss_pred ecccCCCcHHHHHHHHHHHHhccch
Q psy8700 153 TSAKTNHNVKELFAELLNLEKNRNI 177 (200)
Q Consensus 153 vSa~~~~~i~~~~~~i~~~~~~~~~ 177 (200)
+||++|.|+++++++|.+.+.....
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998865443
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1e-22 Score=159.09 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=116.0
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc--CCCc---------ccceeE--------EEEeCCcEEEEEEEeCC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY--IPTI---------EDTYRQ--------VISCNKNICTLQITDTT 63 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~--~~~~---------~~~~~~--------~~~~~~~~~~~~~~D~~ 63 (200)
.+.+.++|+++|.+++|||||+++|++....... ..+. ...+.. ..........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999874322110 0000 000000 00001123689999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA 143 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 143 (200)
|++.+.......+..+|++++|+|++++.++.+...++..+..... .|+++++||+|+.+..+.... .....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-------~~iivviNK~Dl~~~~~~~~~-~~~i~ 155 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-------KNLIIVQNKVDVVSKEEALSQ-YRQIK 155 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-------CCEEEEEECGGGSCHHHHHHH-HHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-------CCEEEEEECccccchHHHHHH-HHHHH
Confidence 9999999999999999999999999988766676777766555442 589999999999765432111 11121
Q ss_pred HHh------CCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 144 KMW------GCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 144 ~~~------~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
... +++++++||++|.|+.++++.|.+.+...
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 221 56899999999999999999999877543
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=1.1e-23 Score=160.55 Aligned_cols=161 Identities=21% Similarity=0.208 Sum_probs=115.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCC----CCChhhHhhccc---cC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGS----HQFPAMQRLSIS---KG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~~---~~ 79 (200)
.+|+|+|.+|||||||+++|++.... ..+..++.......+..++ ...+.+|||||+ ..+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999876532 1222122222222333333 247999999994 344445555544 59
Q ss_pred CEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEEEec
Q psy8700 80 HAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETS 154 (200)
Q Consensus 80 ~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vS 154 (200)
+++++|+|+++ ++++..+..|+..+..... .....|+++|+||+|+.... .....+....+ .+++++|
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~---~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL---RLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS---STTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCS
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhh---hhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEE
Confidence 99999999998 7888888888888877542 23568999999999987543 22344445555 6899999
Q ss_pred ccCCCcHHHHHHHHHHHHhccc
Q psy8700 155 AKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~~ 176 (200)
|+++.|+++++++|.+.+.+..
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCC
T ss_pred CCCCcCHHHHHHHHHHHHhhCc
Confidence 9999999999999999886543
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=5.7e-24 Score=162.58 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=96.7
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVG 123 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 123 (200)
.+.+++|||+|++.++.++..++.+++++|||+|+++ .+++.....|+..+..... ..+.|++|++
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~----~~~~piiLv~ 267 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW----FTDTSIILFL 267 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG----GTTSEEEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc----ccCCcEEEEE
Confidence 5789999999999999999999999999999999999 5678888888877766432 3568999999
Q ss_pred eCCCCCccc---------------ccCHHHHHHHHH-----------HhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 124 NKCDETENR---------------EVSAAEGEAEAK-----------MWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 124 nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
||.|+...+ .....++..+.. ..++.+++|||+++.||.++|+++.+.+...+
T Consensus 268 NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 268 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp ECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred ECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 999985432 234455556554 24568999999999999999999999886543
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=3.7e-24 Score=167.05 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=111.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-------Hhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM-------QRL 74 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~ 74 (200)
++..++|+++|..|+|||||+++|++..+. ..+..++.......+...+. ..+.+|||||++.+..+ ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 456799999999999999999999987652 22222222333344444433 37999999998876543 455
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
++..+|++++|+|+... .....|+..+... +.|+++|+||+|+.+.... .....+....+++++++|
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM--------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence 78899999999998332 3335566555553 3899999999999876543 344555556788999999
Q ss_pred ccCCCcHHHHHHHHHHHHhcc
Q psy8700 155 AKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~~ 175 (200)
|++|.|++++|+.|.+.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999988543
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.7e-22 Score=159.45 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=101.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC---------hhhHhhcc
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF---------PAMQRLSI 76 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 76 (200)
.+|+++|.||||||||+|+|++.... ..+..++.+.....+..++. .+++|||||++.. ..+...++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999986632 22222222333344455554 6899999997752 34567789
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH-HHHHHHhCC-cEEEec
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG-EAEAKMWGC-HFMETS 154 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~vS 154 (200)
+.+|++++|+|+.++.+..+ ..+...+... ..|+++|+||+|+.... .... ..+. ..++ +++++|
T Consensus 80 ~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~--------~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iS 146 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED-ESLADFLRKS--------TVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVS 146 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH-HHHHHHHHHH--------TCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECB
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--------CCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEe
Confidence 99999999999987654333 1222223322 37999999999985421 1111 2222 4566 789999
Q ss_pred ccCCCcHHHHHHHHHHHHhc
Q psy8700 155 AKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 155 a~~~~~i~~~~~~i~~~~~~ 174 (200)
|++|.|+.++++.+.+.+.+
T Consensus 147 A~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 147 AEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhccc
Confidence 99999999999999998854
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=1.2e-22 Score=161.07 Aligned_cols=151 Identities=22% Similarity=0.242 Sum_probs=109.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC-CCh--------hhHhhc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSH-QFP--------AMQRLS 75 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~ 75 (200)
.++|+++|.||||||||+|+|++... ...+..++.+.....+..++. .+.+|||||+. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998653 233333444444555666554 78999999987 543 234567
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
+..+|++++|+|++++.++.... ++.. . ...|+++|+||+|+.+. ....+...+. ..+++++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~----l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILER----I------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHH----H------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHH----h------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEEC
Confidence 88999999999999887765532 2222 1 24799999999999653 2222222221 23368999999
Q ss_pred cCCCcHHHHHHHHHHHHh
Q psy8700 156 KTNHNVKELFAELLNLEK 173 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~ 173 (200)
++|.|+++++++|.+.+.
T Consensus 387 ktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGTCCHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999765
No 136
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=1.8e-23 Score=159.72 Aligned_cols=119 Identities=16% Similarity=0.111 Sum_probs=91.7
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
..+.+++|||+|+++++.++..++++++++|+|+|++ +.+++.....|+..+..... .++.|++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~----~~~~piiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC----FEKTSFMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG----GSSCEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc----cCCCeEEEE
Confidence 5689999999999999999999999999999999998 78889998888887776432 356899999
Q ss_pred eeCCCCCcccc--c-------------------CHHHHHHHHHH----------------hCCcEEEecccCCCcHHHHH
Q psy8700 123 GNKCDETENRE--V-------------------SAAEGEAEAKM----------------WGCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 123 ~nK~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~~i~~~~ 165 (200)
+||+|+.+.+. . ...++..+... ..+.+++|||+++.||+++|
T Consensus 257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 99999854321 1 12333444221 12346899999999999999
Q ss_pred HHHHHHHhcc
Q psy8700 166 AELLNLEKNR 175 (200)
Q Consensus 166 ~~i~~~~~~~ 175 (200)
+++.+.+...
T Consensus 337 ~~v~~~I~~~ 346 (354)
T 2xtz_A 337 KLVDETLRRR 346 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987544
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=1.7e-23 Score=157.82 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=95.3
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
..+.+++|||+|+++++.++..++++++++|+|+|++ +.+++.....|+..+..... ..+.|++++
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~----~~~~~iiL~ 240 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW----FQNSSVILF 240 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG----GTTCEEEEE
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc----cCCceEEEE
Confidence 4478999999999999999999999999999999664 66778877777777765442 467899999
Q ss_pred eeCCCCCccc----------------ccCHHHHHHHHH----------HhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 123 GNKCDETENR----------------EVSAAEGEAEAK----------MWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 123 ~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+||.|+.+.+ .....++..+.. ..++.+++|||+++.||+.+|+.+.+.+.+.+
T Consensus 241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 9999986543 334455555532 23457889999999999999999999886554
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=3.6e-22 Score=157.59 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=105.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-----------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM----------- 71 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------- 71 (200)
...++|+++|++|||||||+|+|++... ...+..++.+.....+..++. .+.+|||+|+.+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 4568999999999999999999998653 122222222333345556665 6889999997433221
Q ss_pred -HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HH----HHH
Q psy8700 72 -QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AE----AKM 145 (200)
Q Consensus 72 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~ 145 (200)
...++..+|++++++|++++.+.... .+...+.. ...|+++|+||+|+.+.......+.. .. ...
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI 326 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC
Confidence 13456678999999999876655442 22232322 33799999999999765443222221 11 222
Q ss_pred hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 146 WGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 146 ~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
.+++++++||++|.|+.++|+.+.+.+.+..
T Consensus 327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 327 DYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 3568999999999999999999998876543
No 139
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=7.7e-23 Score=156.83 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=88.9
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVG 123 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 123 (200)
.+.+++|||+|++.++..+..++.+++++|||+|+++ .+++.....|+..+..... ..+.|+++++
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~----~~~~piILv~ 275 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV----FSNVSIILFL 275 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG----GTTSEEEEEE
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh----hCCCCEEEEE
Confidence 4689999999999999999999999999999999999 7789998888888776432 3568999999
Q ss_pred eCCCCCccc----------------ccCHHHHHHHHH-----------HhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 124 NKCDETENR----------------EVSAAEGEAEAK-----------MWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 124 nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
||.|+.+.+ .....++..+.. ..++.+++|||+++.||.++|+++.+.+...+
T Consensus 276 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 276 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp ECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 999986432 134444544431 23567899999999999999999999885443
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=2.9e-22 Score=158.17 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=100.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhcc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLSI 76 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 76 (200)
.++|+++|++|||||||+|+|++... ...+..++.+.....+..++. .+.+|||||+..+... ...++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 57999999999999999999998643 222222322333344555554 7899999997654432 23367
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK 156 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 156 (200)
..+|++++|+|.+++.+... ..++..+ ...|+++|+||+|+.+........ .+ ..+.+++++||+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l----------~~~piivV~NK~Dl~~~~~~~~~~--~~--~~~~~~i~iSAk 366 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV----------KHRPLILVMNKIDLVEKQLITSLE--YP--ENITQIVHTAAA 366 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH----------TTSCEEEEEECTTSSCGGGSTTCC--CC--TTCCCEEEEBTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc----------cCCcEEEEEECCCCCcchhhHHHH--Hh--ccCCcEEEEECC
Confidence 88999999999998765544 2333222 226999999999997765433110 00 135689999999
Q ss_pred CCCcHHHHHHHHHHHHhcc
Q psy8700 157 TNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 157 ~~~~i~~~~~~i~~~~~~~ 175 (200)
+|.|+++++++|.+.+...
T Consensus 367 tg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988654
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=4.6e-21 Score=139.88 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=103.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC--cc-cceeEEEEeCCcEEEEEEEeCCCCCC-----------Ch
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT--IE-DTYRQVISCNKNICTLQITDTTGSHQ-----------FP 69 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~D~~G~~~-----------~~ 69 (200)
++..++|+++|++|||||||+|+|++........+. .. .........++ ..+.+|||||... +.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 456799999999999999999999997764443331 22 22233444444 3789999999543 22
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------HHHHHHHH
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------AAEGEAEA 143 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~ 143 (200)
.....++..+|++++|+|+++... .. ..++..+....+ .....|++||+||+|+....... ......+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~-~~-~~~l~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTE-EE-HKATEKILKMFG---ERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSS-HH-HHHHHHHHHHHH---HHHGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCH-HH-HHHHHHHHHHhh---hhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence 334445567899999999875433 11 222323322211 01225999999999987654433 12456667
Q ss_pred HHhCCcEEEecccCC-----CcHHHHHHHHHHHHhcc
Q psy8700 144 KMWGCHFMETSAKTN-----HNVKELFAELLNLEKNR 175 (200)
Q Consensus 144 ~~~~~~~~~vSa~~~-----~~i~~~~~~i~~~~~~~ 175 (200)
..++..++.+++..+ .++.++|+.+.+.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 778888888876643 68999999998888653
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=2.3e-22 Score=151.25 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=103.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCC-CcccceeEEEEeCCcEEEEEEEeCCCCC-CC--------hhhHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TIEDTYRQVISCNKNICTLQITDTTGSH-QF--------PAMQRL 74 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~--------~~~~~~ 74 (200)
...+|+++|++|||||||+|+|++..... ...+ ++.......+. ....++.+|||||.. .. ......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~--~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT--EGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE--ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE--ECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34689999999999999999999876531 1112 21111122222 234589999999987 22 223345
Q ss_pred ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEe
Q psy8700 75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMET 153 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v 153 (200)
++..+|++++|+|.++ -+ ....+... ... ....|+++++||+|+.+...........+....+. .++++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~--~l~-----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLN--KLR-----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHH--HHH-----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHH--HHH-----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 6778999999999976 22 22222211 112 13589999999999876222112223334444565 79999
Q ss_pred cccCCCcHHHHHHHHHHHHhc
Q psy8700 154 SAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 154 Sa~~~~~i~~~~~~i~~~~~~ 174 (200)
||+++.|+.++++.+.+.+.+
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCB
T ss_pred ECCCCCCHHHHHHHHHHhCCc
Confidence 999999999999999987654
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=9.2e-22 Score=145.29 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=104.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC-CCCCcCCC-cc-cceeEEEEeCCcEEEEEEEeCCCCCCCh-----------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPT-IE-DTYRQVISCNKNICTLQITDTTGSHQFP----------- 69 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------- 69 (200)
....++|+++|.+|||||||+++|++.. +...+.++ .. .........++ ..+.+|||||+..+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4467999999999999999999999876 33333333 22 22233333343 479999999965432
Q ss_pred hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee-CCCCCcccccCH-------HHHHH
Q psy8700 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN-KCDETENREVSA-------AEGEA 141 (200)
Q Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~ 141 (200)
.....++..+|++++|+|+++... ....++..+....+ .....|+++++| |+|+.+.. ... .....
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~---~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFG---EDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCH--HHHHHHHHHHHHHC---GGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCH--HHHHHHHHHHHHhC---chhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHH
Confidence 222336788999999999986221 22234444555432 011356777776 99997432 111 11223
Q ss_pred HHHHhCCc---E--EEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 142 EAKMWGCH---F--METSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 142 ~~~~~~~~---~--~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
.....+.. + +++||+++.|+.++|+.|.+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 44444432 2 7899999999999999999988653
No 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=3.4e-21 Score=141.15 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=106.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC---cccceeEEEEeCCcEEEEEEEeCCCC--------CCChhhH
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT---IEDTYRQVISCNKNICTLQITDTTGS--------HQFPAMQ 72 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~ 72 (200)
+...++|+++|.+|||||||+|++++........+. +..........+ ...+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 456799999999999999999999987754332222 112222333333 357999999996 3333333
Q ss_pred hhcc----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc------CHHHHHHH
Q psy8700 73 RLSI----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV------SAAEGEAE 142 (200)
Q Consensus 73 ~~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~ 142 (200)
..++ ..+|++++|+|+++.. .....++..+....+. ...+.|++|++||.|+.+.... .......+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~--~~~~~~~~~l~~~~~~--~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFT--AQDQQAVRQVRDMFGE--DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL 171 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCC--HHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCC--HHHHHHHHHHHHHhCh--hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH
Confidence 3333 8899999999997522 2223444555554320 1235799999999999653211 01234556
Q ss_pred HHHhCCcEEEecccC-----CCcHHHHHHHHHHHHhcc
Q psy8700 143 AKMWGCHFMETSAKT-----NHNVKELFAELLNLEKNR 175 (200)
Q Consensus 143 ~~~~~~~~~~vSa~~-----~~~i~~~~~~i~~~~~~~ 175 (200)
...++..++.+++.. +.|+.++++.|.+++.+.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 172 VAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 667777777776554 579999999999988763
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=8.6e-21 Score=148.43 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=100.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC---CCCCcCC--CcccceeE-EEEe-------------C--C----cEEEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT---FRESYIP--TIEDTYRQ-VISC-------------N--K----NICTLQ 58 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 58 (200)
+...++|+++|..++|||||+++|.+.. +.....+ |....+.. .... + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 2222222 22211111 1110 1 1 137899
Q ss_pred EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--H
Q psy8700 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--A 136 (200)
Q Consensus 59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~ 136 (200)
+|||||++.+.......+..+|++++|+|++++....+....+..+.. . ...|+++++||+|+.+..... .
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l------~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L------GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T------TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c------CCCeEEEEEEccCCCCHHHHHHHH
Confidence 999999988888777788889999999999964311121222222222 2 225899999999997654321 1
Q ss_pred HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 137 AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 137 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.+...+... .+++++++||++|.|++++++.|.+.+..
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 222333332 35689999999999999999999987653
No 146
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=5.3e-22 Score=150.21 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=94.7
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEE
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLEELRPIWEVIRETKGGANELASIPIML 121 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 121 (200)
...+.+++|||+|+++++.++..++++++++|+|+|++ +.+++.....|+..+..... ..+.|+++
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~----~~~~piiL 233 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF----LKGAVKLI 233 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG----GTTSEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc----cCCCeEEE
Confidence 34568999999999999999999999999999999998 77889998888888876542 46789999
Q ss_pred EeeCCCCCcccc---------------cCHHHHHHHHH-Hh--------------------------CCcEEEecccCCC
Q psy8700 122 VGNKCDETENRE---------------VSAAEGEAEAK-MW--------------------------GCHFMETSAKTNH 159 (200)
Q Consensus 122 v~nK~Dl~~~~~---------------~~~~~~~~~~~-~~--------------------------~~~~~~vSa~~~~ 159 (200)
++||.|+.+.+. ....++..+.. .. .+.+++|||++..
T Consensus 234 v~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~ 313 (340)
T 4fid_A 234 FLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS 313 (340)
T ss_dssp EEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH
T ss_pred EEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH
Confidence 999999854211 12233333221 12 3578899999999
Q ss_pred cHHHHHHHHHHHHhc
Q psy8700 160 NVKELFAELLNLEKN 174 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~ 174 (200)
||+.+|+.+.+.+..
T Consensus 314 nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 314 NIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998876
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=2.7e-22 Score=158.16 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=97.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCC--------CChhhHhhcc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSH--------QFPAMQRLSI 76 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~ 76 (200)
..+|+++|.+|||||||+|+|++.... .....++.++ ...........+.+|||||++ .+..+...++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999986542 1112222221 122223233479999999986 4556677788
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecc
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSA 155 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa 155 (200)
..+|++++|+|+.++.+..+ .++..+.. ....|+++|+||+|+....... ..+. ..++ +++++||
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~-------~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA 146 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY-------RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISG 146 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT-------TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH-------HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeC
Confidence 99999999999988765443 22322221 2458999999999986542111 1111 3455 7899999
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q psy8700 156 KTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~ 174 (200)
++|.|+.++++++.+.+.+
T Consensus 147 ~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGG
T ss_pred cCCCChHHHHHHHHHhcCc
Confidence 9999999999999998864
No 148
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=2.7e-20 Score=143.09 Aligned_cols=161 Identities=22% Similarity=0.218 Sum_probs=106.7
Q ss_pred eE-EEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC---------ChhhHhhcc
Q psy8700 8 YR-VVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ---------FPAMQRLSI 76 (200)
Q Consensus 8 ~k-i~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~ 76 (200)
++ |+++|++|||||||+|+|.+...... +..++-+.....+.+++ ..+.+|||+|... +... ...+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 44 99999999999999999998664221 11222233344555666 4689999999632 1222 2357
Q ss_pred ccCCEEEEEeeCCChh--HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHh---CCcE
Q psy8700 77 SKGHAFILVYSCTSRQ--SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMW---GCHF 150 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~---~~~~ 150 (200)
..+|++++|+|++++. .......+...+.... ..+.|+++|+||+|+.+..... ......+.... +.++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIG-----VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-----CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-----cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 7899999999999876 5555555555555543 3568999999999987543110 01111222333 2378
Q ss_pred EEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 151 METSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+++||+++.|++++++.|.+.+....
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHHHhcccC
Confidence 99999999999999999998775443
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=7.6e-22 Score=146.78 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=89.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCc-------CCCcccce-eEEEEeCCcEEEEEEEeCCCCC-------C
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESY-------IPTIEDTY-RQVISCNKNICTLQITDTTGSH-------Q 67 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~-------~ 67 (200)
+...++|+++|.+|+|||||+|+|++.... ..+ .++..... ......++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 345799999999999999999998775532 222 33333222 2333334555799999999973 3
Q ss_pred ChhhH-------hhcccc-------------CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 68 FPAMQ-------RLSISK-------------GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 68 ~~~~~-------~~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
+..+. ..++.. +|+++++++.+.......-..++..+ . ...|+++|+||+|
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l---~------~~~pvi~V~nK~D 155 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL---H------EKVNIIPLIAKAD 155 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH---T------TTSCEEEEESSGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH---h------ccCCEEEEEeccC
Confidence 34433 333332 67888888766522111112222222 2 1589999999999
Q ss_pred CCcccccCHH--HHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 128 ETENREVSAA--EGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 128 l~~~~~~~~~--~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
+....+.... .........+++++.+|+.++.|+.+++++|.+.+.
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 8755433221 223334456889999999999999999999988763
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=2.3e-23 Score=166.49 Aligned_cols=158 Identities=22% Similarity=0.228 Sum_probs=110.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 84 (200)
+.++|+++|.+++|||||+++|.+..+.....++.+... ...+..+ ....+.||||||++.+..+...++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 468899999999999999999987665444444433222 1222221 12368999999999999999999999999999
Q ss_pred EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHHH---HHHh--CCcEEEecccCC
Q psy8700 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEAE---AKMW--GCHFMETSAKTN 158 (200)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~vSa~~~ 158 (200)
|+|++++...+.... +..+. ....|+++++||+|+.+...... ...... ...+ .++++++||++|
T Consensus 82 VVDa~dg~~~qt~e~-l~~~~--------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQHAK--------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSCCCHHHHHH-HHHHH--------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCCccHHHHHH-HHHHH--------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 999998665444332 22222 23479999999999975332111 111111 1111 247999999999
Q ss_pred CcHHHHHHHHHHHHh
Q psy8700 159 HNVKELFAELLNLEK 173 (200)
Q Consensus 159 ~~i~~~~~~i~~~~~ 173 (200)
.|++++++.+...+.
T Consensus 153 ~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 153 ENMMALAEATIALAE 167 (537)
T ss_dssp CSSHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHhhh
Confidence 999999999998764
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=6.2e-21 Score=149.37 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC---CCCCcCC--CcccceeE-EEEe-------------C--C----cEEEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT---FRESYIP--TIEDTYRQ-VISC-------------N--K----NICTLQ 58 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 58 (200)
+...++|+++|.+++|||||+++|++.. +.....+ |....+.. .... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998532 2222222 22211111 1100 0 1 136899
Q ss_pred EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--H
Q psy8700 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--A 136 (200)
Q Consensus 59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~ 136 (200)
+|||||++.+.......+..+|++++|+|++++....+....+..+.... ..|+++++||+|+.+..... .
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-------~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-------QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-------CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-------CCcEEEEEECccCCCHHHHHHHH
Confidence 99999998888877788888999999999996431112222222232222 25899999999997644211 1
Q ss_pred HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 137 AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 137 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
.+...+... .+++++++||++|.|++++++.|.+.+..
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 122222222 35699999999999999999999987653
No 152
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=1e-20 Score=153.31 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CC-----CCcCCCc------cccee---EEEEe---CCcEEEEEEEeCCCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGT--FR-----ESYIPTI------EDTYR---QVISC---NKNICTLQITDTTGSH 66 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~-----~~~~~~~------~~~~~---~~~~~---~~~~~~~~~~D~~G~~ 66 (200)
+..+|+++|.+++|||||+++|+... .. ..+..+. +-+.. ..+.. ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 11 1111110 10110 11111 4556899999999999
Q ss_pred CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh
Q psy8700 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW 146 (200)
Q Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 146 (200)
.+.......+..+|++++|+|++++...+....|..... .+.|+++++||+|+.+.. .......+....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---------~~ipiIvViNKiDl~~a~--~~~v~~ei~~~l 151 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---------MDLEVVPVLNKIDLPAAD--PERVAEEIEDIV 151 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---------TTCEEEEEEECTTSTTCC--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---------CCCCEEEeeeccCccccc--HHHHHHHHHHHh
Confidence 999999999999999999999998877777666554332 337999999999997643 122234445555
Q ss_pred CC---cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 147 GC---HFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 147 ~~---~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
++ .++++||++|.|++++++.|.+.+....
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 65 4999999999999999999999886543
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-21 Score=138.35 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=88.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcccc----C
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK----G 79 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~ 79 (200)
....++|+++|++|||||||+++|.+..+........+. ...+.....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc-----eeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 456789999999999999999999997753311111111 1111134578999999999887777777765 8
Q ss_pred CEEEEEeeCC-ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 80 HAFILVYSCT-SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 80 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
|++++|+|++ +..++.....|+..+...... ......|+++|+||+|+.+...
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITES-SCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHH-HSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhh-ccccCCCEEEEEEchHhcCCCC
Confidence 9999999999 899999988888776654310 0024689999999999977554
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.8e-20 Score=151.58 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=112.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----CcCCC----------cc-cceeEEEEe-CCcEEEEEEEeCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-----SYIPT----------IE-DTYRQVISC-NKNICTLQITDTTGS 65 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----~~~~~----------~~-~~~~~~~~~-~~~~~~~~~~D~~G~ 65 (200)
.+..+|+++|..++|||||+++|+... ... .+..+ .. ......+.. ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997621 111 11111 00 001111111 455689999999999
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM 145 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 145 (200)
.++.......+..+|++++|+|++++...+....|..... .+.|+++++||+|+.+... ......+...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---------~~ipiIvviNKiDl~~a~~--~~v~~el~~~ 152 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---------QDLVIIPVINKIDLPSADV--DRVKKQIEEV 152 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---------TTCEEEEEEECTTSTTCCH--HHHHHHHHHT
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---------CCCCEEEEEeccCccccCH--HHHHHHHHHh
Confidence 9999888889999999999999999877777666554332 3479999999999976431 2223344455
Q ss_pred hCC---cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 146 WGC---HFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 146 ~~~---~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
.++ +++++||++|.|+.++++.|.+.+...
T Consensus 153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 565 489999999999999999999988654
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=8.2e-21 Score=151.43 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=95.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCCcC---------------------------CCcccce-eEEEEeCCcEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYI---------------------------PTIEDTY-RQVISCNKNIC 55 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~---------------------------~~~~~~~-~~~~~~~~~~~ 55 (200)
..+||+++|.+++|||||+++|+... +...+. ...+.+. .....++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 45899999999999999999997641 110000 0000011 11222344456
Q ss_pred EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHH------HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEE------LRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.+.||||||++++......++..+|++++|+|++++..... ....+. +.... ...|++||+||+|+.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~------~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL------GIHNLIIAMNKMDNV 184 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT------TCCCEEEEEECGGGG
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc------CCCcEEEEEECcCcc
Confidence 89999999999999999999999999999999998754322 122222 22212 225799999999997
Q ss_pred cccccCHHH----HHHHHHHh-----CCcEEEecccCCCcHHH
Q psy8700 130 ENREVSAAE----GEAEAKMW-----GCHFMETSAKTNHNVKE 163 (200)
Q Consensus 130 ~~~~~~~~~----~~~~~~~~-----~~~~~~vSa~~~~~i~~ 163 (200)
+..+....+ ...+.... +++++++||++|.|+.+
T Consensus 185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 633211111 12222222 35799999999999875
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.85 E-value=1.3e-20 Score=150.02 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=105.3
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCC----C---CCCcCC--CcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcc
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGT----F---RESYIP--TIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSI 76 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~----~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 76 (200)
..++|+++|.+++|||||+++|.+.. . .....+ |....+ ..+..++ ..+.+|||||++.+.......+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~-~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF-SAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC-CEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce-EEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 35899999999999999999998765 1 111111 111111 1222233 5899999999998888888899
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHHh----CCcE
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKMW----GCHF 150 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~ 150 (200)
..+|++++|+|++++..-+. ...+..+.. ...|+++++||+|+.+..... ..+...+.... +.++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQT-GEHMLILDH--------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred hhCCEEEEEEecCCCccHHH-HHHHHHHHH--------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 99999999999987322222 222222222 237889999999997643221 12222333333 5689
Q ss_pred EEecccCCCcHHHHHHHHHHHHh
Q psy8700 151 METSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 151 ~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
+++||++|.|+.++++.|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999774
No 157
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=4.2e-21 Score=148.34 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=94.1
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 124 (200)
+.+++|||+|+++++.++..++++++++|+|+|+++ .+++.....|+..+..... ..+.|++||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~----~~~~piiLvgN 292 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW----LRTISVILFLN 292 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT----CSSCCEEEEEE
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc----CCCCeEEEEEE
Confidence 689999999999999999999999999999999999 8899999999988776432 46789999999
Q ss_pred CCCCCcccc---cC---------------------------HHHHHHHH-----HH--------hCCcEEEecccCCCcH
Q psy8700 125 KCDETENRE---VS---------------------------AAEGEAEA-----KM--------WGCHFMETSAKTNHNV 161 (200)
Q Consensus 125 K~Dl~~~~~---~~---------------------------~~~~~~~~-----~~--------~~~~~~~vSa~~~~~i 161 (200)
|.|+.+.+. .. ..++..++ .. .++.+++|||+++.||
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999854322 10 12333332 22 1346789999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy8700 162 KELFAELLNLEKNRN 176 (200)
Q Consensus 162 ~~~~~~i~~~~~~~~ 176 (200)
+++|+.+.+.+...+
T Consensus 373 ~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 373 RRVFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876544
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=7.6e-21 Score=152.41 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=81.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--------------C---Cc-----CCCcccceeEEEEeCCcEEEEEEEeCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--------------E---SY-----IPTIEDTYRQVISCNKNICTLQITDTT 63 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--------------~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (200)
+..+|+++|.+|+|||||+++|+...-. . .+ .+... .......+....+.+.+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence 4579999999999999999999621100 0 00 00001 011122223335689999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
|+.++......++..+|++++|+|++++....... +|..+.. ...|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~--------~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL--------RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT--------TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH--------cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876666543 4433332 34899999999998643
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=3.1e-20 Score=146.35 Aligned_cols=154 Identities=20% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCc-----------------------------CCCcccceeEEEEeCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESY-----------------------------IPTIEDTYRQVISCNK 52 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~ 52 (200)
+...++|+++|.+++|||||+++|+... ..... .+... .......+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-id~~~~~~~~ 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKT-VEVGRAYFET 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCce-EEEeEEEEec
Confidence 3456899999999999999999996532 11000 00011 0011222333
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHH------HHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeC
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSL------EELRPIWEVIRETKGGANELASIP-IMLVGNK 125 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK 125 (200)
....+.||||||+++|.......+..+|++++|+|++++... .+....+..+.. ...| +++++||
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--------~~v~~iIvviNK 164 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--------AGVKHLIVLINK 164 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--------cCCCeEEEEeec
Confidence 446899999999999999999999999999999999986421 122222222222 2255 8999999
Q ss_pred CCCCccc------ccCHHHHHHHHHHhC------CcEEEecccCCCcHHHHHH
Q psy8700 126 CDETENR------EVSAAEGEAEAKMWG------CHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 126 ~Dl~~~~------~~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~~~~ 166 (200)
+|+.... +....+...+....+ ++++++||++|.|+.++++
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9985421 011112222333333 4799999999999999655
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-21 Score=150.78 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC-CCCCcC--------CCcccce-eEEEEeCCcEEEEEEEeCCCC-------CC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYI--------PTIEDTY-RQVISCNKNICTLQITDTTGS-------HQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~-------~~ 67 (200)
+..++|+++|++|+|||||+++|.+.. +...+. ++..... ......++....+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987643 222222 2221111 112223455578999999998 55
Q ss_pred ChhhHh-------hccccC-------------CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 68 FPAMQR-------LSISKG-------------HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 68 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
+..+.. .++..+ ++++++++.. ..++..+...+ +.. . ....|+++|+||+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~--~~~-l-----~~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAF--MKA-I-----HNKVNIVPVIAKAD 185 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHH--HHH-T-----CS-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHH--HHH-h-----ccCCCEEEEEECCC
Confidence 655554 455443 3455555431 33444444322 222 2 15589999999999
Q ss_pred CCcccccCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 128 ETENREVSA--AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 128 l~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+....+... .....+....++++|++||+++.+ .+.|..+.+.+.+.
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 987654433 234444555678999999999998 88887777766543
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=1.4e-20 Score=145.04 Aligned_cols=147 Identities=11% Similarity=0.041 Sum_probs=103.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC 88 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (200)
+|+++|.+++|||||+++|+.. ..|.... ...+......+.+|||||+.++.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~---~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDIT---MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSSE---EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEee---EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999821 1111111 12233334579999999999998888888899999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEEee-CCCCCcccccCH--HHHHHHHHHh---CCcEEE--ecccC--
Q psy8700 89 TSRQSLEELRPIWEVIRETKGGANELASIPI-MLVGN-KCDETENREVSA--AEGEAEAKMW---GCHFME--TSAKT-- 157 (200)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--vSa~~-- 157 (200)
++. ...+...++..+.... .|. ++++| |+|+ +...... .+...+.... .+++++ +||++
T Consensus 93 ~~g-~~~qt~e~~~~~~~~~--------i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 PQG-LDAHTGECIIALDLLG--------FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp TTC-CCHHHHHHHHHHHHTT--------CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred CCC-CcHHHHHHHHHHHHcC--------CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 543 3444555555544332 576 88999 9998 4332111 1222222222 358999 99999
Q ss_pred -CCcHHHHHHHHHHHHhcc
Q psy8700 158 -NHNVKELFAELLNLEKNR 175 (200)
Q Consensus 158 -~~~i~~~~~~i~~~~~~~ 175 (200)
+.|++++++.|.+.+...
T Consensus 163 ~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 163 PFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcccc
Confidence 999999999999887543
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=3.6e-20 Score=144.82 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=109.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC--------CCCCC-cCC------Ccccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKG--------TFRES-YIP------TIEDTY-RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~--------~~~~~-~~~------~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
+...++|+++|.+++|||||+++|++. .+... ... ..+.+. .....++.....+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999873 11000 000 001111 12233344456899999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccC---HHHHHHHH
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVS---AAEGEAEA 143 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~ 143 (200)
+.......+..+|++++|+|++++... +...++..+... ..| +++++||+|+.+..+.. ..+...+.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--------CCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 988888899999999999999886543 335555544432 267 88999999997522111 11233344
Q ss_pred HHhC-----CcEEEecccCCCc------------------HHHHHHHHHHHHh
Q psy8700 144 KMWG-----CHFMETSAKTNHN------------------VKELFAELLNLEK 173 (200)
Q Consensus 144 ~~~~-----~~~~~vSa~~~~~------------------i~~~~~~i~~~~~ 173 (200)
...+ .+++++||++|.| +.++++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 4444 6899999999987 7788888877664
No 163
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=1.2e-19 Score=147.19 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=104.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCC----cCCCcccceeEEE-------------EeCCcEEEEEEEeCCCCCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQVI-------------SCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~~D~~G~~~~ 68 (200)
+.++|+++|.+++|||||+++|.+..+... ..++.+..+.... ..+.....+.||||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 468999999999999999999987544221 1112211111000 00011125999999999999
Q ss_pred hhhHhhccccCCEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC----------
Q psy8700 69 PAMQRLSISKGHAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---------- 135 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---------- 135 (200)
..+....+..+|++++|+|+++ +.++..+. .+.. ...|+++++||+|+.......
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--------cCCeEEEEecccccccccccccCCchHHHHH
Confidence 9988888999999999999998 54444332 2222 347999999999996422100
Q ss_pred ---HH----------HHHHHHHHhC---------------CcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 136 ---AA----------EGEAEAKMWG---------------CHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 136 ---~~----------~~~~~~~~~~---------------~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
.. +........+ .+++++||++|.|+.+++++|...+.
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 0001111111 27999999999999999999998775
No 164
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=3.6e-21 Score=152.55 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=97.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce--eEEEEeCCcEEEEEEEeCCC--------CCCChhhHhhcc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTTG--------SHQFPAMQRLSI 76 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~ 76 (200)
..+|+++|.+|||||||+|+|.+..... ....++.. ............+.+||||| ++.+..+...++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~--v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISI--VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 5799999999999999999999865421 11112222 12233333445899999999 344556777888
Q ss_pred ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecc
Q psy8700 77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSA 155 (200)
Q Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa 155 (200)
..+|++++|+|..++..... .++..+.. ....|+++|+||+|+.+.... ...+ ...+. .++++||
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~-------~~~~pvilV~NK~D~~~~~~~----~~e~-~~lg~~~~~~iSA 166 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILY-------RTKKPVVLAVNKLDNTEMRAN----IYDF-YSLGFGEPYPISG 166 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHT-------TCCSCEEEEEECC-------------CCS-GGGSSSSEEECCT
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHH-------HcCCCEEEEEECccchhhhhh----HHHH-HHcCCCceEEeec
Confidence 99999999999876443322 23322221 245899999999998643210 1111 12343 6789999
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q psy8700 156 KTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 156 ~~~~~i~~~~~~i~~~~~~ 174 (200)
++|.|+.++++.+.+.+..
T Consensus 167 ~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHhhccc
Confidence 9999999999999887643
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=2.2e-21 Score=152.90 Aligned_cols=151 Identities=21% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC--CCCCCc-------------------------------CCCcccceeEEEEeC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG--TFRESY-------------------------------IPTIEDTYRQVISCN 51 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~ 51 (200)
...++|+++|.+++|||||+++|+.. .+.... ..+... ....++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~---~~~~~~ 80 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINL---TFMRFE 80 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------CEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEe---eEEEEe
Confidence 35689999999999999999999864 222110 001110 111233
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHH-------HHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELR-------PIWEVIRETKGGANELASIPIMLVGN 124 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~n 124 (200)
.....+.+|||||+.+|......++..+|++++|+|+++ .+++... ..+..+.. . .-.|+++++|
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-~------~~~~iivviN 152 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-M------GLDQLIVAVN 152 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-T------TCTTCEEEEE
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-c------CCCeEEEEEE
Confidence 445689999999999999999999999999999999998 4555332 22222222 1 2246899999
Q ss_pred CCCCCccc--c----cCHHHHHHHHHHhC-----CcEEEecccCCCcHHHHHH
Q psy8700 125 KCDETENR--E----VSAAEGEAEAKMWG-----CHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 125 K~Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~~ 166 (200)
|+|+.+.. + ....+...+....+ ++++++||++|.|+.++++
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 99997621 1 11223344444444 5799999999999975543
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=6.9e-20 Score=144.34 Aligned_cols=152 Identities=20% Similarity=0.109 Sum_probs=100.3
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCCC----------cCCCccc-------------------ce-eEEEEeCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES----------YIPTIED-------------------TY-RQVISCNK 52 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~----------~~~~~~~-------------------~~-~~~~~~~~ 52 (200)
...++|+++|.+++|||||+++|++.. +... ..++... +. .....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345899999999999999999998643 1110 0111100 00 01112333
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
....+.+|||||++.|......++..+|++++|+|++++...+ ...++..+.. . ...|+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~-~------~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL-L------GIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH-T------TCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-c------CCCeEEEEEEcCcCCccc
Confidence 4568999999999999888888999999999999999865333 2334433332 2 123699999999997632
Q ss_pred c--c--CHHHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy8700 133 E--V--SAAEGEAEAKMWG-----CHFMETSAKTNHNVKEL 164 (200)
Q Consensus 133 ~--~--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~ 164 (200)
+ . ...+...+....+ ++++++||++|.|+.++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1 1 1122334445556 58999999999999874
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=3.8e-20 Score=144.28 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=106.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC---Cc-----CC------Ccccce-eEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE---SY-----IP------TIEDTY-RQVISCNKNICTLQITDTTGSHQFPA 70 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~~-----~~------~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (200)
+.++|+++|.+++|||||+++|++..... .. .. ..+.+. .....++.....+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 36899999999999999999998731100 00 00 000011 11223334446899999999998888
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCccccc---CHHHHHHHHHHh
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREV---SAAEGEAEAKMW 146 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~ 146 (200)
.....+..+|++++|+|+++....+. ...+..+.. ...| +++++||+|+.+..+. ...+...+....
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ--------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999998654333 333333332 2367 6899999999752211 112333444444
Q ss_pred C-----CcEEEecccCCCc----------HHHHHHHHHHHHhc
Q psy8700 147 G-----CHFMETSAKTNHN----------VKELFAELLNLEKN 174 (200)
Q Consensus 147 ~-----~~~~~vSa~~~~~----------i~~~~~~i~~~~~~ 174 (200)
+ ++++++||++|.| +.++++.|.+.+..
T Consensus 153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 4 5899999999764 88999999887653
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=6.9e-21 Score=143.22 Aligned_cols=159 Identities=19% Similarity=0.145 Sum_probs=99.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc------CCCcc----------------c---cee-------------
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY------IPTIE----------------D---TYR------------- 45 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~------~~~~~----------------~---~~~------------- 45 (200)
....++|+++|.+|||||||+|+|++..+.+.. .|+.. + +..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999987753211 12100 0 000
Q ss_pred ------------EEEEeC-CcEEEEEEEeCCCCCC-------------ChhhHhhccccCCEEE-EEeeCCChhHHHHHH
Q psy8700 46 ------------QVISCN-KNICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFI-LVYSCTSRQSLEELR 98 (200)
Q Consensus 46 ------------~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~ 98 (200)
..+... .....+.+|||||... +..+...++..++.++ +|+|+++........
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000 0125799999999642 3456667888888776 799988754433322
Q ss_pred HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hC-CcEEEecccCCCcHHHHHHHHHH
Q psy8700 99 PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WG-CHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
.++..+ . ....|+++|+||+|+.+............... .+ .+++++||++|.|+.++++.+.+
T Consensus 183 ~~~~~~---~-----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 KIAKEV---D-----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHH---C-----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHh---C-----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 222222 2 24589999999999976543221111100001 12 36788999999999999999877
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.4e-20 Score=148.50 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=98.8
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc-------------------------------CCCcccceeEEEEeCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY-------------------------------IPTIEDTYRQVISCNK 52 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 52 (200)
....++|+++|.+++|||||+++|++....-.. .+..... .....+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid-~~~~~~~~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFST 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCS-CSCCEEEC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEe-eeeEEEec
Confidence 345799999999999999999999865321000 0011100 01112233
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHH---HHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSL---EELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
....+.||||||+..+......++..+|++++|+|++++... .....+...+..... ....|++||+||+|+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~----lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS----LGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT----TTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH----cCCCeEEEEEeccccc
Confidence 445899999999999999999999999999999999875311 001112222222221 1224699999999997
Q ss_pred cccccC----HHHHHHHHHHh-----CCcEEEecccCCCcHHHH
Q psy8700 130 ENREVS----AAEGEAEAKMW-----GCHFMETSAKTNHNVKEL 164 (200)
Q Consensus 130 ~~~~~~----~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~~ 164 (200)
+..+.. ......+.... +++++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 632211 11122222333 358999999999999876
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=2.1e-21 Score=154.00 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=104.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 83 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 83 (200)
++..+|+++|.+++|||||+++|....+.....+...... ...+..++ ..+.||||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4578999999999999999999987554333222221111 11122233 36899999999999998888999999999
Q ss_pred EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc--ccCHHH--HHHHHHHhC--CcEEEecccC
Q psy8700 84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR--EVSAAE--GEAEAKMWG--CHFMETSAKT 157 (200)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~vSa~~ 157 (200)
+|+|++++...+.. ..+..+.. ...|+++++||+|+.+.. ...... ...+...++ ++++++||++
T Consensus 80 LVVda~~g~~~qT~-e~l~~~~~--------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-EAIQHAKA--------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp EEEETTTBSCTTTH-HHHHHHHH--------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred EEeecccCccHHHH-HHHHHHHh--------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 99999884332222 22222222 347999999999997532 111100 000111222 6899999999
Q ss_pred CCcHHHHHHHHHHH
Q psy8700 158 NHNVKELFAELLNL 171 (200)
Q Consensus 158 ~~~i~~~~~~i~~~ 171 (200)
|.|+.++|+++...
T Consensus 151 G~gI~eLle~I~~~ 164 (501)
T 1zo1_I 151 GTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCTTHHHHTTTT
T ss_pred ccCcchhhhhhhhh
Confidence 99999999998753
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=4.1e-20 Score=146.33 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=100.7
Q ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhC--CCCCC-------------------------------cCCCcccceeEE
Q psy8700 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRES-------------------------------YIPTIEDTYRQV 47 (200)
Q Consensus 1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~ 47 (200)
|..+...++|+++|.+++|||||+++|++. .+... ...+.... .
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~---~ 77 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA---L 77 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS---C
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEE---E
Confidence 455566799999999999999999999864 11110 00111111 1
Q ss_pred EEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH---HH---HHHHHHHHHHHHhCCCCCCCCCc-EE
Q psy8700 48 ISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS---LE---ELRPIWEVIRETKGGANELASIP-IM 120 (200)
Q Consensus 48 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-~i 120 (200)
..++.....+.+|||||+..|.......+..+|++++|+|++++.. |. +....+..+.. . ..| ++
T Consensus 78 ~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~-------~v~~ii 149 (458)
T 1f60_A 78 WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L-------GVRQLI 149 (458)
T ss_dssp EEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T-------TCCEEE
T ss_pred EEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c-------CCCeEE
Confidence 1233445689999999999999999999999999999999987632 21 22223322222 2 244 89
Q ss_pred EEeeCCCCCcccc--c--CHHHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy8700 121 LVGNKCDETENRE--V--SAAEGEAEAKMWG-----CHFMETSAKTNHNVKEL 164 (200)
Q Consensus 121 vv~nK~Dl~~~~~--~--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~ 164 (200)
+++||+|+.+..+ . ...+...+....+ ++++++||++|.|+.++
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9999999974211 1 1122333334444 68999999999998744
No 172
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=3e-19 Score=147.66 Aligned_cols=167 Identities=15% Similarity=0.209 Sum_probs=109.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccce--------eEEEEe-CCc----------------------
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTY--------RQVISC-NKN---------------------- 53 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--------~~~~~~-~~~---------------------- 53 (200)
..++|+|+|.+|+|||||+|+|++....+ ...|++.... ..+... ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 57899999999999999999999876422 2233331100 001111 000
Q ss_pred -----------------------E--EEEEEEeCCCCCC---ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHH
Q psy8700 54 -----------------------I--CTLQITDTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIR 105 (200)
Q Consensus 54 -----------------------~--~~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 105 (200)
. ..+.+|||||... .......++..+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0 2589999999543 45667778899999999999998877666554433322
Q ss_pred HHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---H-------HH-----HHHHH--------hCCcEEEeccc------
Q psy8700 106 ETKGGANELASIPIMLVGNKCDETENREVSAA---E-------GE-----AEAKM--------WGCHFMETSAK------ 156 (200)
Q Consensus 106 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~-------~~-----~~~~~--------~~~~~~~vSa~------ 156 (200)
....|+++|+||+|+......... . .. .+... ...+++++||+
T Consensus 228 --------~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 228 --------GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp --------TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred --------hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 124689999999998754311110 0 10 01111 12479999999
Q ss_pred --------CCCcHHHHHHHHHHHHhccchhHH
Q psy8700 157 --------TNHNVKELFAELLNLEKNRNISLQ 180 (200)
Q Consensus 157 --------~~~~i~~~~~~i~~~~~~~~~~~~ 180 (200)
++.|+.++++.+.+.+........
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~~~~~~ 331 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTRERAIAE 331 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHHTHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999998865544333
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=3.4e-19 Score=127.28 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=96.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCC----------ChhhHh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ----------FPAMQR 73 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~ 73 (200)
....+|+++|++|||||||++++.+..+...+.++.+.+.. .....++ .+.+|||||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 35689999999999999999999886643333344333221 2222333 478999999743 122233
Q ss_pred hcc---ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHHhC-
Q psy8700 74 LSI---SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKMWG- 147 (200)
Q Consensus 74 ~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~- 147 (200)
.++ ..++++++++|++++.+.... .....+.. ...|+++++||+|+.+..+.. ......+....+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 344 467999999999876543321 12222222 337899999999987643211 122333334443
Q ss_pred -CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 148 -CHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 148 -~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+.++++|++++.|+.++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 478899999999999999999887643
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=2.3e-18 Score=134.10 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=108.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----hhhH---hhccccC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----PAMQ---RLSISKG 79 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~---~~~~~~~ 79 (200)
..|+++|++|||||||++++++.... ..+..++.......+..++ ...+.+||+||.... ..+. ......+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 35899999999999999999876421 1111111111222333333 246899999997432 1111 2234579
Q ss_pred CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700 80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH 159 (200)
Q Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 159 (200)
+.+++++|++ ...+.++..++..+..... .....|.++++||+|+... . ............+.+++.+||+++.
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~---aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDP---ALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCH---HHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhH---HhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCcc
Confidence 9999999998 5567777777766665431 1124799999999998764 2 1122233334457799999999999
Q ss_pred cHHHHHHHHHHHHhccch
Q psy8700 160 NVKELFAELLNLEKNRNI 177 (200)
Q Consensus 160 ~i~~~~~~i~~~~~~~~~ 177 (200)
|+++++++|.+.+.+...
T Consensus 311 gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 311 GLPALKEALHALVRSTPP 328 (416)
T ss_dssp THHHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999999999999876543
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=1.7e-18 Score=127.95 Aligned_cols=122 Identities=20% Similarity=0.153 Sum_probs=81.8
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccc-----
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSIS----- 77 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~----- 77 (200)
...++|+++|.+|+|||||+|+|++... ...+.++...........++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4679999999999999999999998764 22233333333333444444 48999999998766443333332
Q ss_pred ----cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 78 ----KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 78 ----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
.+|++++|++++..........++..+....+ .....|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~---~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFG---KEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHC---GGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhc---hhhhcCEEEEEeCcccCCC
Confidence 68999999998765422223466666666653 1112499999999998644
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.78 E-value=7.6e-19 Score=149.19 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=108.6
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC------CCc--C------CCcccce-eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR------ESY--I------PTIEDTY-RQVISCNKNICTLQITDTTGSHQF 68 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~------~~~--~------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~ 68 (200)
+...++|+++|.+++|||||+++|++.... ..+ . .+.+.+. .....++.....+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 445699999999999999999999863100 000 0 0111111 011233444568999999999999
Q ss_pred hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCccccc---CHHHHHHHHH
Q psy8700 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREV---SAAEGEAEAK 144 (200)
Q Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~ 144 (200)
.......+..+|++|+|+|++++...+ ...++..+.... .| ++|++||+|+.+..+. ...+...+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~lg--------IP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQVG--------VPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHHT--------CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHcC--------CCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 888888999999999999999864333 344444444322 67 7899999999753221 1123334444
Q ss_pred HhC-----CcEEEecccCC--------CcHHHHHHHHHHHHhc
Q psy8700 145 MWG-----CHFMETSAKTN--------HNVKELFAELLNLEKN 174 (200)
Q Consensus 145 ~~~-----~~~~~vSa~~~--------~~i~~~~~~i~~~~~~ 174 (200)
..+ ++++++||++| .|+.++++.|.+.+..
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 444 58999999999 4689999999886643
No 177
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=8e-20 Score=145.02 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=86.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC--CCCCC-------------------------------cCCCcccceeEEEEeC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG--TFRES-------------------------------YIPTIEDTYRQVISCN 51 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~ 51 (200)
...++|+++|.+++|||||+++|+.. .+... ...|....+ .. +.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~--~~ 117 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AY--FE 117 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CE--EE
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EE--Ee
Confidence 34589999999999999999999752 11100 000111000 11 22
Q ss_pred CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh---HHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCC
Q psy8700 52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ---SLEELRPIWEVIRETKGGANELASIP-IMLVGNKCD 127 (200)
Q Consensus 52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 127 (200)
.....+.||||||++.|.......+..+|++++|+|++++. +|.....+...+.... ....| ++|++||+|
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-----~~~vp~iivviNK~D 192 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-----TQGINHLVVVINKMD 192 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-----HTTCSSEEEEEECTT
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-----HcCCCEEEEEEECcc
Confidence 22458999999999999988888999999999999999863 2221111222222111 12356 999999999
Q ss_pred CCccc---c---cCHHHHHHHHHHh-------CCcEEEecccCCCcHHHHH
Q psy8700 128 ETENR---E---VSAAEGEAEAKMW-------GCHFMETSAKTNHNVKELF 165 (200)
Q Consensus 128 l~~~~---~---~~~~~~~~~~~~~-------~~~~~~vSa~~~~~i~~~~ 165 (200)
+.+.. + ....+...+.... +++++++||++|.|+.+++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 96421 1 1111233334443 3569999999999998755
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=3.3e-19 Score=137.43 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=99.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-c--------------ceeE------------------------
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-D--------------TYRQ------------------------ 46 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--------------~~~~------------------------ 46 (200)
...+|+|+|++|||||||+|+|++..+.+....... . .+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999765222211110 0 0000
Q ss_pred --------------EEEe-CCcEEEEEEEeCCCCCCC-------------hhhHhhccccCCEEEEEeeCCChhHHHHHH
Q psy8700 47 --------------VISC-NKNICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSCTSRQSLEELR 98 (200)
Q Consensus 47 --------------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 98 (200)
...+ ......+.+|||||...+ ..+...++.+++++++|++..+.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 111236899999998775 677888999999999999875433221 2
Q ss_pred HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700 99 PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167 (200)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~ 167 (200)
.++..+.... ....|+++|+||+|+.+................+.+|+.+++..+.++.+.+..
T Consensus 191 ~~~~l~~~~~-----~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVD-----PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSC-----TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhc-----ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 3333343333 345799999999999865543332222233345678999999999888766544
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.78 E-value=9.9e-19 Score=132.40 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=69.5
Q ss_pred EEEEEEeCCCCCC-------------ChhhHhhccccCCEEEEEeeCCChhHH-HHHHHHHHHHHHHhCCCCCCCCCcEE
Q psy8700 55 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSCTSRQSL-EELRPIWEVIRETKGGANELASIPIM 120 (200)
Q Consensus 55 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~i 120 (200)
..+.+|||||... +......++..+|++++|+|..+.... .....++ .... ....|++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~---~~~~-----~~~~~~i 202 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLA---KEVD-----PEGKRTI 202 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHH---HHHC-----SSCSSEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHH---HHhC-----CCCCcEE
Confidence 4799999999754 345666788899999999997433211 1111222 2222 2458999
Q ss_pred EEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec---ccC---CCcHHHHHHHHHHHHhcc
Q psy8700 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETS---AKT---NHNVKELFAELLNLEKNR 175 (200)
Q Consensus 121 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS---a~~---~~~i~~~~~~i~~~~~~~ 175 (200)
+|+||+|+.+................+..++++| +.+ +.|+.++++.+.+.+...
T Consensus 203 ~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 203 GVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp EEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred EEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9999999976543211111100011124566665 444 788999999998888654
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=7.1e-18 Score=138.94 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=81.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc----------------c-cceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----------------E-DTYRQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
....+|+++|+.|+|||||+++|++.........+. . ........+....+.+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 346789999999999999999998532210000000 0 11112223333457899999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
+......++..+|++++|+|.++...... ..++..+.. ...|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~--------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER--------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH--------ccCCEEEEecCCchh
Confidence 99999999999999999999887654333 344544443 237999999999986
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=5.6e-18 Score=125.62 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=78.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhH-------hhc
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQ-------RLS 75 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~ 75 (200)
...++|+++|.+|+|||||+|+|++..+. ..+.++........ .+.....+.+|||||+..+.... ..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS--RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE--EEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE--EeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987642 12222222222222 23344689999999986543211 111
Q ss_pred --cccCCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 76 --ISKGHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 76 --~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
...+|++++|+|++... +.. ...|+..+....+ .....|+++|+||+|+....
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~---~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFG---KGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHC---GGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhC---cccccCEEEEEECcccCCcC
Confidence 34689999999886532 332 2356666665542 01125999999999997554
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=5.6e-19 Score=132.74 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=85.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhC-CCCCCcC--------CCcccc-eeEEEEeCCcEEEEEEEeCCCC-------CC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKG-TFRESYI--------PTIEDT-YRQVISCNKNICTLQITDTTGS-------HQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~D~~G~-------~~ 67 (200)
+-.++|+++|++|||||||+++|.+. .+..... ++.... ........+....+.+||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44689999999999999999998875 3322221 111111 1111222344578999999997 55
Q ss_pred ChhhHh-------hcccc-------------CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 68 FPAMQR-------LSISK-------------GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 68 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
+..+.. .++.. +++++++.+.+.. +++.... ..+.... ...|+++|+||.|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~------~~~~iilV~~K~D 166 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH------NKVNIVPVIAKAD 166 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT------TTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH------hcCCEEEEEEeCC
Confidence 555544 34333 2345555543221 2222221 2233332 3479999999999
Q ss_pred CCcccccC--HHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700 128 ETENREVS--AAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176 (200)
Q Consensus 128 l~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~ 176 (200)
+....+.. ..+...++...++++|++||+++ |++++|..+.+.+.+..
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 97654432 23456667778899999999999 99999999998886543
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=2e-17 Score=132.80 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=78.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCc----------CCCc----------ccce-eEEEEeCCcEEEEEEEeCCC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESY----------IPTI----------EDTY-RQVISCNKNICTLQITDTTG 64 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----------~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~G 64 (200)
...+|+++|.+|+|||||+++|+...-.... ..+. +.+. .....+....+.+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4689999999999999999999863210000 0000 0000 11122233446899999999
Q ss_pred CCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+..+......++..+|++++|+|++++..... ..++..+. ....|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~--------~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR--------LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT--------TTTCCEEEEEECTTSCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH--------HcCCCEEEEEcCcCCcc
Confidence 99999888899999999999999988643222 23332222 24589999999999864
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=2e-17 Score=136.73 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=81.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------------CcCCCcccceeEEEEeCCcEEEEEEEeCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE------------------SYIPTIEDTYRQVISCNKNICTLQITDTT 63 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (200)
.....+|+++|.+|+|||||+++|+... +.. ....+... ....+....+.+.+||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~---~~~~~~~~~~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA---AVTTCFWKDHRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C---CEEEEEETTEEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc---ceEEEEECCeEEEEEECc
Confidence 3557899999999999999999998421 100 00111111 111122234689999999
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
|+..+......++..+|++++|+|+++.........|. .+.. .+.|+++++||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~--------~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK--------YKVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH--------TTCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH--------cCCCEEEEEECCCccc
Confidence 99999999999999999999999999887766654443 3333 2489999999999864
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=7e-18 Score=131.03 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=46.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEE--E-------------------EeCC-cEEEEEEEeCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQV--I-------------------SCNK-NICTLQITDTTG 64 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~~~D~~G 64 (200)
++|+++|.||||||||+|+|++..... .+..++....... + ..++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999866321 2211111111111 1 0122 246899999999
Q ss_pred CCC----ChhhHh---hccccCCEEEEEeeCCCh
Q psy8700 65 SHQ----FPAMQR---LSISKGHAFILVYSCTSR 91 (200)
Q Consensus 65 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 91 (200)
+.. ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 233333 346789999999999875
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.74 E-value=1.9e-19 Score=146.30 Aligned_cols=161 Identities=21% Similarity=0.181 Sum_probs=86.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCc---------------------CCC-----cccce--eEEEEeCCc
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESY---------------------IPT-----IEDTY--RQVISCNKN 53 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~---------------------~~~-----~~~~~--~~~~~~~~~ 53 (200)
....++|+++|.+++|||||+++|+... ..... ... ..+.+ .....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3456899999999999999999996421 00000 000 00001 011122233
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh---HH---HHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCC
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ---SL---EELRPIWEVIRETKGGANELASIP-IMLVGNKC 126 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 126 (200)
...+.||||||+..+.......+..+|++++|+|++++. .+ ......+..+.. . ..| ++||+||+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l-------gip~iIvviNKi 325 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L-------GISEIVVSVNKL 325 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S-------SCCCEEEEEECG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c-------CCCeEEEEEecc
Confidence 468899999999998888888889999999999998642 11 111222222222 2 244 89999999
Q ss_pred CCCcccc-cCH---HHHHHHH-HHhCC-----cEEEecccCCCcHH--------------HHHHHHHHHH
Q psy8700 127 DETENRE-VSA---AEGEAEA-KMWGC-----HFMETSAKTNHNVK--------------ELFAELLNLE 172 (200)
Q Consensus 127 Dl~~~~~-~~~---~~~~~~~-~~~~~-----~~~~vSa~~~~~i~--------------~~~~~i~~~~ 172 (200)
|+.+..+ ... .+...+. ...++ +++++||++|.|+. .+++.|.+..
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 9875221 111 1112222 22343 69999999999998 6777776644
No 187
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.6e-18 Score=130.41 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=105.9
Q ss_pred HHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHH
Q psy8700 22 SLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRP 99 (200)
Q Consensus 22 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~ 99 (200)
+++.+++.+.+. ..+.||.++.+......++ .+++||+ +++++.+++.+++++|++++|+|++++. ++..+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 577788888887 7888998866654332222 6899999 8999999999999999999999999987 6888888
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHH
Q psy8700 100 IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETSAKTNHNVKELFAELL 169 (200)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~~~~~i~ 169 (200)
|+..+.. .+.|++||+||+|+.+..+. .+...+...++ ++++++||++|.|++++|..+.
T Consensus 107 ~l~~~~~--------~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 107 FLVLAEK--------NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHH--------TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHH--------CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 8776544 24899999999999765432 23455556666 8999999999999999998764
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=5.2e-17 Score=134.32 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=80.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh--CCCCCC--------cCCC------cccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK--GTFRES--------YIPT------IEDTY-RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~--~~~~~~--------~~~~------~~~~~-~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
.+..+|+++|.+|+|||||+++|+. +.+... .... ...+. .....+......+.+|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 5578999999999999999999985 222100 0000 00000 00111112246899999999999
Q ss_pred ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
+......++..+|++++|+|++++........ |..+.. .+.|+++|+||+|+..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~--------~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT--------YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH--------TTCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH--------cCCCEEEEEECCCccc
Confidence 99999999999999999999998776666444 433433 2379999999999864
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=3.1e-16 Score=129.88 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=81.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCC--------c----------CCCcccceeEEEEe-----CCcEEEEE
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES--------Y----------IPTIEDTYRQVISC-----NKNICTLQ 58 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~--------~----------~~~~~~~~~~~~~~-----~~~~~~~~ 58 (200)
..+..+|+++|..|+|||||+++|+... +... + ..+..... ..... ++..+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence 3567899999999999999999997531 1110 0 00110000 11111 22347899
Q ss_pred EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
||||||+.++......++..+|++++|+|+++....... ..|..+.. .+.|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~--------~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK--------YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH--------cCCCEEEEEeCCCccc
Confidence 999999999999999999999999999999987655443 33433332 3489999999999864
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=129.54 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCC-C--cccce-eEEE----EeCCcEEEEEEEeCCCCCCC-------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-T--IEDTY-RQVI----SCNKNICTLQITDTTGSHQF------- 68 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~-~--~~~~~-~~~~----~~~~~~~~~~~~D~~G~~~~------- 68 (200)
+-.++|+++|++|||||||++.|++.... ..+.. . ...+. ...+ ...+....+.+||++|....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34589999999999999999999986542 11100 0 00111 1111 11233357899999997643
Q ss_pred hhh------------------HhhccccCC--EEEEEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 69 PAM------------------QRLSISKGH--AFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 69 ~~~------------------~~~~~~~~~--~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
..+ ...++.+++ +++++.+.+. .++.... .|+..+ . ...|+|+|+||+|
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L---~------~~v~iIlVinK~D 178 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL---H------EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH---T------TTSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH---h------ccCcEEEEEEccc
Confidence 121 123344444 3444443321 2233333 233222 2 3589999999999
Q ss_pred CCcccccCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 128 ETENREVSA--AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 128 l~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
+....++.. ..........++++|++|++++.++.++|..+.+.++
T Consensus 179 ll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 179 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred CccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 987655443 3455566778999999999999999999888887654
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.72 E-value=4.1e-18 Score=130.95 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=70.9
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
.+.+.||||||... .....+..+|++++|+|....+....+.. ...+.|+++|+||+|+.+...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------------~~~~~p~ivVlNK~Dl~~~~~ 234 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------------GVLELADIVVVNKADGEHHKE 234 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------------TSGGGCSEEEEECCCGGGHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------------hHhhcCCEEEEECCCCcChhH
Confidence 35799999999543 23334588999999999876543322110 123468999999999865432
Q ss_pred cCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 134 VSAAEGEAEAKM----------WGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 134 ~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
... ....+... ++.+++.+||++|.|+++++++|.+.+..
T Consensus 235 ~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 ARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 211 11122211 25789999999999999999999998765
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3.4e-17 Score=117.80 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=92.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC---cccc----------eeEEEEeC------------------CcE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT---IEDT----------YRQVISCN------------------KNI 54 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~----------~~~~~~~~------------------~~~ 54 (200)
...+|+++|.+|||||||+++|+........... .+.. -......+ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999864211100000 0000 00001111 123
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV 134 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 134 (200)
..+.+|||+|+.... ..+....+.+++|+|+.+.... .+....... .|+++|+||+|+.+....
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~-----~~~~~~~~~--------~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV-----VEKHPEIFR--------VADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH-----HHHCHHHHH--------TCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh-----hhhhhhhhh--------cCCEEEEecccCCcchhh
Confidence 578899999952111 0111256889999998765321 111112222 688999999998654322
Q ss_pred CHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 135 SAAEGEAEAKMW--GCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 135 ~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
............ +++++++||++|.|+.++++++.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 333334444433 46899999999999999999999877544
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=2.4e-18 Score=132.17 Aligned_cols=158 Identities=19% Similarity=0.176 Sum_probs=92.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCc------CCCc----------------------c-c-------------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY------IPTI----------------------E-D------------- 42 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~-~------------- 42 (200)
....+|+|+|.+|||||||+|+|++..+.+.. .|+. . .
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999987753221 1110 0 0
Q ss_pred ------ce--eEEEEeC-CcEEEEEEEeCCCCCC-------------ChhhHhhccccCCEEE-EEeeCCChhHHHHHHH
Q psy8700 43 ------TY--RQVISCN-KNICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFI-LVYSCTSRQSLEELRP 99 (200)
Q Consensus 43 ------~~--~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~ 99 (200)
.. ...+.+. .....+.||||||... +..+...++..++.++ +|++.+.... .. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~--~~-~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA--NS-D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG--GC-H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc--hh-H
Confidence 00 0000011 1135799999999532 2345666776665554 5566554222 11 1
Q ss_pred HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH--HHHHhCC-cEEEecccCCCcHHHHHHHHHH
Q psy8700 100 IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA--EAKMWGC-HFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~-~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
+...+.... ....|+++|+||+|+.+........... .....++ +++.+||+++.|+.++++.+.+
T Consensus 186 ~~~i~~~~~-----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVD-----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHC-----TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhC-----cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222233332 2458999999999997654311111100 0001232 5778999999999999998876
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.69 E-value=2.6e-17 Score=132.75 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=79.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC---CCcCCCcccceeEEEEeCCc-------E--------------------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQVISCNKN-------I-------------------- 54 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~-------------------- 54 (200)
...++|+|+|.+|+|||||+|+|++..+. ....+++.... .+..+.. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 46789999999999999999999997753 22222221110 0000000 0
Q ss_pred -------------EEEEEEeCCCCCC-----------ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCC
Q psy8700 55 -------------CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110 (200)
Q Consensus 55 -------------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 110 (200)
..+.||||||... +......++..+|++++|+|+++.........++..+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 2589999999764 346667788899999999999875433444444433322
Q ss_pred CCCCCCCcEEEEeeCCCCCcccc
Q psy8700 111 ANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 111 ~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
...|+++|+||+|+....+
T Consensus 217 ----~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 ----HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp ----CGGGEEEEEECGGGSCHHH
T ss_pred ----cCCCEEEEEECCCccCHHH
Confidence 3479999999999976543
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=4.2e-15 Score=113.55 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=55.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCChh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQFPA 70 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~ 70 (200)
.++|+++|.||||||||+|+|++..... .+..++-......+.+.+. ...+++|||||+....+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 4799999999999999999999866322 2221111111122333332 14799999999887532
Q ss_pred ----hHh---hccccCCEEEEEeeCCC
Q psy8700 71 ----MQR---LSISKGHAFILVYSCTS 90 (200)
Q Consensus 71 ----~~~---~~~~~~~~~i~v~d~~~ 90 (200)
+.. .+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222 24678999999999986
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.66 E-value=8e-17 Score=123.37 Aligned_cols=102 Identities=12% Similarity=0.214 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV 134 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 134 (200)
+.+.++||+|..... ......+|.+++|+|..++.....+.. . ....|.++|+||+|+.+....
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~------~-------il~~~~ivVlNK~Dl~~~~~~ 230 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR------G-------IIEMADLVAVTKSDGDLIVPA 230 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-------------------------CCSCSEEEECCCSGGGHHHH
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH------H-------HHhcCCEEEEeeecCCCchhH
Confidence 478999999964222 334678999999999887543221111 0 123578999999998643211
Q ss_pred CHHHHHHHHH----------HhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 135 SAAEGEAEAK----------MWGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 135 ~~~~~~~~~~----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
. .....+.. .+..+++.+||++|.|+++++++|.+.+.
T Consensus 231 ~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 231 R-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp H-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 11111111 12457899999999999999999998764
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.7e-15 Score=113.36 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=76.5
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhc
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLS 75 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~ 75 (200)
++...+|+++|.||||||||+|+|++.... ..|..++-......+...+. +++++||||.... .......
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 455679999999999999999999986532 22222222333334445544 7999999995432 1223345
Q ss_pred cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700 76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128 (200)
Q Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 128 (200)
++.+|++++|+|++++. .....+...+..... ...+.|.++++||.|.
T Consensus 147 i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~---~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPL--HHKQIIEKELEGVGI---RLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTE---EETCCCCCEEEEECSS
T ss_pred HHhcCccccccccCccH--HHHHHHHHHHHHhhH---hhccCChhhhhhHhhh
Confidence 66899999999999874 344444444444322 2345677778888875
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.64 E-value=8.3e-16 Score=110.90 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=87.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-------------EEEEeC-Cc-----------------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-------------QVISCN-KN----------------- 53 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~----------------- 53 (200)
...++|+++|++|||||||+++|+...+...+.++....+. ..+.++ +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999876443333333221110 111111 10
Q ss_pred --EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700 54 --ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN 131 (200)
Q Consensus 54 --~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 131 (200)
...+.++|++|.-... ..+-...+..+.+++......... .. ... . ..|.++|+||+|+.+.
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~---~~~-~-------~~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH---PGI-M-------KTADLIVINKIDLADA 179 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC---HHH-H-------TTCSEEEEECGGGHHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh---hhH-h-------hcCCEEEEeccccCch
Confidence 1145556666531110 011112344455666432111100 00 001 1 1578999999998764
Q ss_pred cccCHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 132 REVSAAEGEAEAKMW--GCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
............... +++++++||++|.|+.++|+++.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 333444444444443 5689999999999999999999987654
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=1.3e-14 Score=111.32 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=53.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCC-CcccceeEEEEeCC-------------------cEEEEEEEeCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TIEDTYRQVISCNK-------------------NICTLQITDTTGSH 66 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~D~~G~~ 66 (200)
++|+++|.||||||||+|+|.+.... ..+.. |...... ...+.+ ....+++|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999875421 12211 1111111 112211 23579999999976
Q ss_pred CCh-------hhHhhccccCCEEEEEeeCCC
Q psy8700 67 QFP-------AMQRLSISKGHAFILVYSCTS 90 (200)
Q Consensus 67 ~~~-------~~~~~~~~~~~~~i~v~d~~~ 90 (200)
... ......++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 222345788999999999985
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=2.3e-15 Score=126.91 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=84.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------Cc----------CCCccccee-EEEE------------eCC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE------SY----------IPTIEDTYR-QVIS------------CNK 52 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------~~----------~~~~~~~~~-~~~~------------~~~ 52 (200)
.....+|+++|.+++|||||+++|+... ... .+ ..+...... ..+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456899999999999999999998641 100 00 011111111 1111 234
Q ss_pred cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
..+.+.+|||||+.++......+++.+|++++|+|++++.+.+....|. .+.. ...|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~--------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG--------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH--------TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--------cCCCeEEEEECCCcch
Confidence 5789999999999999999999999999999999999988777755444 2222 3479999999999863
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.59 E-value=1.8e-14 Score=116.23 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=79.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--------------CCCcCCCcc-------cceeEEEEeCCcEEEEEEEeCCCC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTF--------------RESYIPTIE-------DTYRQVISCNKNICTLQITDTTGS 65 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~~G~ 65 (200)
.=+|+|+|..++|||||..+|+...- ...+.-+.+ ......+.+.-..+.+.|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 35799999999999999999963110 000000000 000111222223468999999999
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
.+|..-....++-+|++|+|+|+.++-..+. ...|..+.+.. .|.++++||+|...
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~~--------lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMRA--------TPVMTFVNKMDREA 166 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHTT--------CCEEEEEECTTSCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHhC--------CceEEEEecccchh
Confidence 9999999999999999999999998766555 44555555533 89999999999754
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=2.3e-15 Score=114.99 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV 134 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 134 (200)
+.+.+|||||...... .....+|++++|+|....+....+.. .. ...|.++|+||+|+.+....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~-----~~--------~~~p~ivv~NK~Dl~~~~~~ 212 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK-----GL--------MEVADLIVINKDDGDNHTNV 212 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH-----HH--------HHHCSEEEECCCCTTCHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH-----hh--------hcccCEEEEECCCCCChHHH
Confidence 5799999999765333 24578999999999876543221110 00 12578999999998654222
Q ss_pred CHH--HHHHHHHHh-------CCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 135 SAA--EGEAEAKMW-------GCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 135 ~~~--~~~~~~~~~-------~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
... ......... ..+++++||++|.|++++++.|.+.+.
T Consensus 213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 111111111 357899999999999999999998764
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=9.3e-15 Score=107.69 Aligned_cols=114 Identities=11% Similarity=-0.048 Sum_probs=68.1
Q ss_pred EEEEEEeCCCCCCChhhH------hhccccCCEEEEEeeCCChhHHHHHHHHHHHH-HHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 55 CTLQITDTTGSHQFPAMQ------RLSISKGHAFILVYSCTSRQSLEELRPIWEVI-RETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
+.+.+|||||........ ...+.. +++++++|.............+... .... ..+.|+++|+||+|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-----RLGATTIPALNKVD 182 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-----HHTSCEEEEECCGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-----ccCCCeEEEEeccc
Confidence 579999999976543221 124456 8888888875432222222111111 1111 12379999999999
Q ss_pred CCcccccCHHHH---------HH-----------------HHHHhC--CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 128 ETENREVSAAEG---------EA-----------------EAKMWG--CHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 128 l~~~~~~~~~~~---------~~-----------------~~~~~~--~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
+....+...... .. .....+ .+++++||+++.|+++++++|.+.+..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 183 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 875432110000 00 012333 489999999999999999999987743
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.56 E-value=4.8e-15 Score=122.42 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=93.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCccccee---------------------------------------
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYR--------------------------------------- 45 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--------------------------------------- 45 (200)
...+|+|+|.+++|||||+|+|++..+-+ ...+.+.....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999876511 11111100000
Q ss_pred ----------EEEEe-CCcEEEEEEEeCCCCCC-------------ChhhHhhcc-ccCCEEEEEeeCCChhHHHHHHHH
Q psy8700 46 ----------QVISC-NKNICTLQITDTTGSHQ-------------FPAMQRLSI-SKGHAFILVYSCTSRQSLEELRPI 100 (200)
Q Consensus 46 ----------~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~ 100 (200)
....+ ......+.|+||||... ...+...++ ..+|++++|+|++......+...+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00000 00112578999999654 122334444 468999999999864332222122
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----hC-CcEEEecccCCCcHHHHHHHHHH
Q psy8700 101 WEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----WG-CHFMETSAKTNHNVKELFAELLN 170 (200)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~vSa~~~~~i~~~~~~i~~ 170 (200)
+.... ....|+++|+||+|+.+........ .. ... .+ .+++.+||++|.|++++++.+.+
T Consensus 210 ---l~~L~-----~~g~pvIlVlNKiDlv~~~~~~~~i-l~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 ---AKEVD-----PQGQRTIGVITKLDLMDEGTDARDV-LE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp ---HHHHC-----TTCSSEEEEEECTTSSCTTCCSHHH-HT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ---HHHHH-----hcCCCEEEEEeCcccCCcchhhHHH-HH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 22222 2458999999999998654432211 11 111 12 25778999999999999999887
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=2.4e-14 Score=109.11 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=64.3
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
...+.|+||+|...... .....+|.+++++|....+..+.+.. .+. ..|.++++||+|+.....
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~----------~~~~ivvlNK~Dl~~~~~ 210 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK---GIF----------ELADMIAVNKADDGDGER 210 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT---THH----------HHCSEEEEECCSTTCCHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHH---HHh----------ccccEEEEEchhccCchh
Confidence 35799999999754322 23468999999999865432211110 011 135588889999754322
Q ss_pred cCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 134 VSAAEGEAEAKM----------WGCHFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 134 ~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
........+... +..+++.+||+++.|++++++.|.+.+.
T Consensus 211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111112222221 1457899999999999999999998764
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=4.8e-14 Score=115.77 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=79.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh--CCCCC--------CcCCCc------c-cceeEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK--GTFRE--------SYIPTI------E-DTYRQVISCNKNICTLQITDTTGSHQFPA 70 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~--~~~~~--------~~~~~~------~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (200)
-+|+++|..++|||||+.+|+. +.... .+..+. + ........+.-..+.+.|+||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4689999999999999999973 11111 000000 0 00011122233345799999999999999
Q ss_pred hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130 (200)
Q Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 130 (200)
.....++-+|++++|+|+.++-..+. ...|..+.... .|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~~--------lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKMG--------IPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHHT--------CSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHcC--------CCeEEEEecccccc
Confidence 99999999999999999998765554 45565566555 78899999999754
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=1.6e-12 Score=97.70 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=77.2
Q ss_pred CCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHH
Q psy8700 65 SHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAE 142 (200)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~ 142 (200)
+++++.+.+.++.++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+..+.. ......+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--------~~~~~ilV~NK~DL~~~~~v~~~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--------FKVEPVIVFNKIDLLNEEEKKELERWISI 137 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--------TTCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--------CCCCEEEEEEcccCCCccccHHHHHHHHH
Confidence 7778888889999999999999999986 78888888876554 338999999999997654222 2233444
Q ss_pred HHHhCCcEEEecccCCCcHHHHHHHHH
Q psy8700 143 AKMWGCHFMETSAKTNHNVKELFAELL 169 (200)
Q Consensus 143 ~~~~~~~~~~vSa~~~~~i~~~~~~i~ 169 (200)
....+++++++||++|.|++++++.+.
T Consensus 138 ~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 138 YRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 556688999999999999999998654
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.42 E-value=9.9e-12 Score=103.34 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=79.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--------CC--CCcCCCcc-c-----ce---eEEEEeC-----CcEEEEEEEe
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKGT--------FR--ESYIPTIE-D-----TY---RQVISCN-----KNICTLQITD 61 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~~--------~~--~~~~~~~~-~-----~~---~~~~~~~-----~~~~~~~~~D 61 (200)
+.-+|+++|..++|||||+.+|+... .. ..+.-+.. + +. ....... ...+.+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34579999999999999999996311 10 01111110 0 00 0111111 2357899999
Q ss_pred CCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
|||+.+|..-....++-+|++++|+|+.++-..+. ...|..+.... .|.++++||+|..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~~--------lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKYG--------VPRIVYVNKMDRQ 150 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHHT--------CCEEEEEECSSST
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHcC--------CCeEEEEcccccc
Confidence 99999999999999999999999999998765555 44555555544 7999999999974
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.38 E-value=4.7e-13 Score=93.67 Aligned_cols=111 Identities=11% Similarity=0.025 Sum_probs=69.6
Q ss_pred CCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC-CCCcccccCHHHHH
Q psy8700 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC-DETENREVSAAEGE 140 (200)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 140 (200)
.+|++..+.+|..|+.++|++|||+|.+|.+.+. ....+..+.............|++|++||. |+++.. ...+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am--s~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC--CHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC--CHHHHH
Confidence 3478899999999999999999999999986544 233222233332211123678999999995 775543 222222
Q ss_pred HHHH----HhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 141 AEAK----MWGCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 141 ~~~~----~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
.... .....++.|||.+|+|+.+-++|+.+.+..+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 1111 1234689999999999999999999877544
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=100.79 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCc---------------EEEEEEEeCCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKN---------------ICTLQITDTTGSHQF 68 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~ 68 (200)
....+|+++|.+|||||||+|+|.+........|..+ ......+.+.+. ...+++|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999998754222222221 222223333332 235999999997754
Q ss_pred hh-------hHhhccccCCEEEEEeeCCChh
Q psy8700 69 PA-------MQRLSISKGHAFILVYSCTSRQ 92 (200)
Q Consensus 69 ~~-------~~~~~~~~~~~~i~v~d~~~~~ 92 (200)
.+ ....+++.+|++++|+|+.+..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 33 4456778999999999987643
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.35 E-value=9.4e-11 Score=90.60 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=58.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC-CCCcCCC-cccceeEEEEeCCc---------------EEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPT-IEDTYRQVISCNKN---------------ICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~ 67 (200)
....+++++|++|||||||+|+|++... .....|. +-......+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999998654 2222222 22333334444431 13689999999443
Q ss_pred -------ChhhHhhccccCCEEEEEeeCCC
Q psy8700 68 -------FPAMQRLSISKGHAFILVYSCTS 90 (200)
Q Consensus 68 -------~~~~~~~~~~~~~~~i~v~d~~~ 90 (200)
........+..+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23344556678999999999863
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.24 E-value=3.9e-12 Score=93.24 Aligned_cols=108 Identities=10% Similarity=-0.000 Sum_probs=72.3
Q ss_pred CCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHH---HHHHHHHHhCCCCCCCCCcEEEEeeC-CCCCcccccCHH
Q psy8700 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP---IWEVIRETKGGANELASIPIMLVGNK-CDETENREVSAA 137 (200)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~nK-~Dl~~~~~~~~~ 137 (200)
.+|++..+.++..|+.++|++|||+|.+|.+.+..... +...+.+.. ...+.|++|++|| .|+++... ..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~----~l~~apLLVfANKkQDlp~Ams--~~ 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF----GSSGRPLLVLSCISQGDVKRMP--CF 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHH----HCTTCCEEEEEEESSTTSCBCC--HH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchh----hcCCCeEEEEeCCcccccCCCC--HH
Confidence 46789999999999999999999999999876542221 112222211 1255899999996 58865432 22
Q ss_pred HHHHHHH----HhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700 138 EGEAEAK----MWGCHFMETSAKTNHNVKELFAELLNLEKNR 175 (200)
Q Consensus 138 ~~~~~~~----~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~ 175 (200)
+..+... .....++.|||.+|+|+.+-++|+.+.+..+
T Consensus 268 EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 268 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 2221111 1233689999999999999999999877544
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=9.5e-10 Score=85.63 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=68.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCccccee--EEEEe--CCcEEEEEEEeCCCCCCCh-------------
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYR--QVISC--NKNICTLQITDTTGSHQFP------------- 69 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~~~~D~~G~~~~~------------- 69 (200)
++++++|++|||||||+|.|.+..+... .....+.... ..+.. .+....+.++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5799999999999999999988643211 1110111111 11111 2222478999999864320
Q ss_pred -hhH----hhc---------ccc--CCE-EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700 70 -AMQ----RLS---------ISK--GHA-FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132 (200)
Q Consensus 70 -~~~----~~~---------~~~--~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 132 (200)
... ..+ ..+ +|+ ++|+.|...+-+..+ ...+.... ...|+++|.||+|...+.
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~------~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD------SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC------SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh------hCCCEEEEEcchhccchH
Confidence 111 111 111 233 555666543322222 12222222 458999999999987655
Q ss_pred ccCHHHHHHH--HHHhCCcEEEecc
Q psy8700 133 EVSAAEGEAE--AKMWGCHFMETSA 155 (200)
Q Consensus 133 ~~~~~~~~~~--~~~~~~~~~~vSa 155 (200)
+......... ....|+++|.+|.
T Consensus 193 E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 193 ELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHcCCcEEecCC
Confidence 4322211111 2234566666664
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.02 E-value=1.2e-09 Score=87.05 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=84.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHh------hCCC----CCCcCCCccc-------ce-eEEEE-----------------
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFV------KGTF----RESYIPTIED-------TY-RQVIS----------------- 49 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~------~~~~----~~~~~~~~~~-------~~-~~~~~----------------- 49 (200)
.....|+++|.+||||||++++|. +... ...+.+.... .. ...+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 3221 0111111100 00 00000
Q ss_pred eCCcEEEEEEEeCCCCCCCh-hhHhh---c--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEE
Q psy8700 50 CNKNICTLQITDTTGSHQFP-AMQRL---S--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI-MLV 122 (200)
Q Consensus 50 ~~~~~~~~~~~D~~G~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv 122 (200)
.....+.+.|+||||..... .+... . +..+|.+++|+|........ .....+... .|+ .||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~---------~~i~gvV 246 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK---------VDVASVI 246 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH---------HCCCCEE
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh---------cCceEEE
Confidence 00033589999999976432 11111 1 22689999999998753311 112222221 354 899
Q ss_pred eeCCCCCcccccCHHHHHHHHHHhCCcE------------------EEecccCCCc-HHHHHHHHHHH
Q psy8700 123 GNKCDETENREVSAAEGEAEAKMWGCHF------------------METSAKTNHN-VKELFAELLNL 171 (200)
Q Consensus 123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~~-i~~~~~~i~~~ 171 (200)
+||+|..... ... .......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 247 lNK~D~~~~~--g~~--l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKG--GGA--LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCC--THH--HHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccch--HHH--HHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9999976322 111 11223444443 3368889988 99999988776
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=1.3e-10 Score=89.54 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=80.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC------CCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCCCChh--------
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG------TFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQFPA-------- 70 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~-------- 70 (200)
..+|+++|.+|+|||||+|+|.+. .......+ +++. .....+.. +.++||||......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~---gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP---GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT---TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC---CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHH
Confidence 357999999999999999999875 11111111 2222 22233333 79999999653321
Q ss_pred hHhhcc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700 71 MQRLSI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC 148 (200)
Q Consensus 71 ~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 148 (200)
....++ ...+.++++++......+..+.. +.... ..+.|+++++||.|..+..+.. .....+.+..|.
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~-----~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~ 305 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIK-----GGRRSFVCYMANELTVHRTKLE-KADSLYANQLGE 305 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE-----SSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTT
T ss_pred HHHHHhcccccCceEEEEcCCceEEECCEEE----EEEcc-----CCCceEEEEecCCcccccccHH-HHHHHHHHhcCC
Confidence 111122 45788899887632211111000 11111 2457999999999988765543 334556666777
Q ss_pred cEEEecccCCCcH
Q psy8700 149 HFMETSAKTNHNV 161 (200)
Q Consensus 149 ~~~~vSa~~~~~i 161 (200)
.+...++....++
T Consensus 306 ~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 306 LLSPPSKRYAAEF 318 (369)
T ss_dssp TBCSSCGGGTTTC
T ss_pred ccCCCCchhhhhc
Confidence 7776666554443
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.00 E-value=1.6e-08 Score=78.73 Aligned_cols=162 Identities=17% Similarity=0.079 Sum_probs=86.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcc-cce-eEEEEeCCcEEEEEEEeCCCCCCC----hh-hHhhcccc
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIE-DTY-RQVISCNKNICTLQITDTTGSHQF----PA-MQRLSISK 78 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~D~~G~~~~----~~-~~~~~~~~ 78 (200)
...++++|++|||||||+|.+.+-..... ...... ... ...+........+.+||++|.... .. +...-+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 45799999999999999999988332111 000000 000 011111111125789999995321 11 11112333
Q ss_pred CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-------ccccCHHH----HHHHH----
Q psy8700 79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-------NREVSAAE----GEAEA---- 143 (200)
Q Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~----~~~~~---- 143 (200)
.+..++ ++..... +.-..+...+.. ...|+++|.||.|+.- -+...... ...+.
T Consensus 149 ~~~~~~-lS~G~~~--kqrv~la~aL~~--------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 149 YDFFII-ISATRFK--KNDIDIAKAISM--------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp CSEEEE-EESSCCC--HHHHHHHHHHHH--------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEE-eCCCCcc--HHHHHHHHHHHh--------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 455554 6665211 111122222332 2379999999999741 11111111 11221
Q ss_pred HHhC---CcEEEecc--cCCCcHHHHHHHHHHHHhccchhH
Q psy8700 144 KMWG---CHFMETSA--KTNHNVKELFAELLNLEKNRNISL 179 (200)
Q Consensus 144 ~~~~---~~~~~vSa--~~~~~i~~~~~~i~~~~~~~~~~~ 179 (200)
...+ ..++.+|+ ..+.|++++.+.+.+.+.+.....
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 1222 36788999 666779999999999887666544
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.94 E-value=1.6e-09 Score=83.50 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=71.4
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH----
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG---- 139 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---- 139 (200)
..+.|.++...+.+.++++++|+|+.++. ..|...+.+.. .+.|+++|+||+|+..... .....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~------~~~p~ilV~NK~DL~~~~~-~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV------GNNKVLLVGNKADLIPKSV-KHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS------SSSCEEEEEECGGGSCTTS-CHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh------CCCcEEEEEEChhcCCccc-CHHHHHHHH
Confidence 34678889999999999999999999864 34444455543 3589999999999975432 12222
Q ss_pred HHHHHHhCC---cEEEecccCCCcHHHHHHHHHHHH
Q psy8700 140 EAEAKMWGC---HFMETSAKTNHNVKELFAELLNLE 172 (200)
Q Consensus 140 ~~~~~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~ 172 (200)
.......++ +++.+||++|.|++++++.+.+..
T Consensus 123 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 223445666 799999999999999999998755
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.91 E-value=1.8e-10 Score=88.73 Aligned_cols=137 Identities=14% Similarity=0.069 Sum_probs=75.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCC----CcCCCccccee--EEEEeCCcEEEEEEEeCCCCCCChh--------hH
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE----SYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQFPA--------MQ 72 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~--------~~ 72 (200)
..+|+++|.+|+|||||+|+|.+..... ......+.++. ....+... +.++||||...... ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3589999999999999999998753211 11112222222 12233333 88999999654321 11
Q ss_pred hhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcE
Q psy8700 73 RLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHF 150 (200)
Q Consensus 73 ~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (200)
..+ ....+.++++++.........+.. +.... ....|+++++||.|..+..+. ......+.+..|..+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~-----~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l 306 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVS-----GGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLL 306 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE-----SSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTB
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEec-----CCCceEEEEecCccccccccH-HHHHHHHHHHhCCcc
Confidence 111 245677888887632111111000 11111 245799999999998876543 333445566667666
Q ss_pred EEeccc
Q psy8700 151 METSAK 156 (200)
Q Consensus 151 ~~vSa~ 156 (200)
+..++.
T Consensus 307 ~p~~~~ 312 (368)
T 3h2y_A 307 SPPTPE 312 (368)
T ss_dssp CSSCHH
T ss_pred CCCchh
Confidence 655543
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.85 E-value=1.1e-08 Score=75.55 Aligned_cols=136 Identities=22% Similarity=0.277 Sum_probs=69.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCC--------cCCCcccceeEEEEeCCc--EEEEEEEeCCCCCCC-------h
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES--------YIPTIEDTYRQVISCNKN--ICTLQITDTTGSHQF-------P 69 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~-------~ 69 (200)
.++++++|+.|||||||+|.|.+...... ..+.........+..... ...+.++|++|.... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999987332110 001000001111111111 136789999984321 1
Q ss_pred hhH---------------------hhccccCCEEEEEeeCC-ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 70 AMQ---------------------RLSISKGHAFILVYSCT-SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 70 ~~~---------------------~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+. ...+..+.+.++++|-. .+-.-.+ ...+..... . .++++|++|+|
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~-----~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSK-----V-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHT-----T-SEEEEEETTGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHh-----c-CcEEEEEeccc
Confidence 100 01122357788888743 2211111 233444442 2 79999999999
Q ss_pred CCcccccCHHH--HHHHHHHhCCcEEE
Q psy8700 128 ETENREVSAAE--GEAEAKMWGCHFME 152 (200)
Q Consensus 128 l~~~~~~~~~~--~~~~~~~~~~~~~~ 152 (200)
.....+..... ........++.+|.
T Consensus 152 ~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 152 TMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 87655433221 22223445666554
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.84 E-value=2.8e-09 Score=82.17 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH---
Q psy8700 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE--- 140 (200)
Q Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--- 140 (200)
.++.|.++...++.+++++++|+|+.++.+ .|...+.+.. .+.|+++|+||+|+..... ......
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l------~~~piilV~NK~DLl~~~~-~~~~~~~~l 124 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA------ADNPILLVGNKADLLPRSV-KYPKLLRWM 124 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC------TTSCEEEEEECGGGSCTTC-CHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh------CCCCEEEEEEChhcCCCcc-CHHHHHHHH
Confidence 477889999999999999999999999763 2333334333 3579999999999975432 112222
Q ss_pred -HHHHHhCC---cEEEecccCCCcHHHHHHHHHHHHh
Q psy8700 141 -AEAKMWGC---HFMETSAKTNHNVKELFAELLNLEK 173 (200)
Q Consensus 141 -~~~~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~~ 173 (200)
......|. .++.+||++|.|++++++.+.+...
T Consensus 125 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 22344565 6899999999999999999987653
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=1.9e-08 Score=74.71 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=36.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
...++++++|.||+|||||+|+|.+..... ....+++++ ..+.... .+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~--~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK--TGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee--cCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 457899999999999999999999865311 111111111 1222222 489999999653
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.72 E-value=8.6e-08 Score=75.06 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=73.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh------CCC----CCCcCCCc-------ccceeE-EEEe-----------------
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK------GTF----RESYIPTI-------EDTYRQ-VISC----------------- 50 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~------~~~----~~~~~~~~-------~~~~~~-~~~~----------------- 50 (200)
++..|+++|++|+||||++..|.. ... ...+.+.. ...... .+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998863 110 01111100 000000 0000
Q ss_pred CCcEEEEEEEeCCCCCCChh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700 51 NKNICTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124 (200)
Q Consensus 51 ~~~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 124 (200)
....+.+.++||+|...... +.. .....+|.+++|+|+....... .....+.... .+..||+|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~~--------~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEAT--------PIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHSC--------TTEEEEEE
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhhC--------CCeEEEEE
Confidence 01226799999999553221 111 1122578999999987653322 2222232222 35679999
Q ss_pred CCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 125 KCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
|.|..... -.........+.|+..++.
T Consensus 248 KlD~~~~g----G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 248 KLDGSAKG----GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp CCSSCSSH----HHHHHHHHTTCCCEEEEEC
T ss_pred CCCCcccc----cHHHHHHHHHCCCEEEEEc
Confidence 99975322 1223334457888877765
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.71 E-value=2.2e-08 Score=74.33 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=69.5
Q ss_pred EEeCCCCC-CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH
Q psy8700 59 ITDTTGSH-QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA 137 (200)
Q Consensus 59 ~~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 137 (200)
+-..||+. .........+..+|+++.|+|+.++.+.... .+.+.. ...|.++|+||+|+.+... ..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l------~~kp~ilVlNK~DL~~~~~--~~ 69 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL------KNKPRIMLLNKADKADAAV--TQ 69 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC------SSSCEEEEEECGGGSCHHH--HH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHH------CCCCEEEEEECcccCCHHH--HH
Confidence 34567865 3456667788999999999999998765431 112222 3489999999999976321 11
Q ss_pred HHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700 138 EGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKN 174 (200)
Q Consensus 138 ~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~ 174 (200)
....+....+++++.+||+++.|+.++++.+.+.+.+
T Consensus 70 ~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 70 QWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 2223333457799999999999999999998887754
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.64 E-value=2e-08 Score=78.83 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCCCCChh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC-c-EEEEeeC
Q psy8700 54 ICTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI-P-IMLVGNK 125 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK 125 (200)
.+.+.++||||...... +.. ..+..+|.+++|+|...... . +..+.... ... | ..+|+||
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~---~~~~~~~~------~~~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A---GIQAKAFK------EAVGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H---HHHHHHHH------TTSCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H---HHHHHHHh------hcccCCeEEEEeC
Confidence 35789999999765322 111 12236899999999875532 1 11222222 224 5 7899999
Q ss_pred CCCCcccccCHHHHHHHHHHhCCcEEEe------------------cccCCCc-HHHHHHHHHHHH
Q psy8700 126 CDETENREVSAAEGEAEAKMWGCHFMET------------------SAKTNHN-VKELFAELLNLE 172 (200)
Q Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v------------------Sa~~~~~-i~~~~~~i~~~~ 172 (200)
+|..... . .........+.++..+ |+..|.| +..+++.+.+.+
T Consensus 248 ~D~~~~~---g-~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 248 LDGSAKG---G-GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp SSSCSTT---H-HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred CCCccch---H-HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9974321 1 1222444555554443 5555555 555555554443
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.63 E-value=2.1e-08 Score=73.62 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=34.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~ 67 (200)
++++++|.+|+|||||+|+|.+..... ..+..+.+. ...+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 599999999999999999999866421 111111111 11222222 589999999654
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.57 E-value=7.4e-08 Score=78.09 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-E---Ee-CCcEEEEEEEeCCCCCC
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-I---SC-NKNICTLQITDTTGSHQ 67 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~D~~G~~~ 67 (200)
.+.++|+|+|.||+|||||+|+|++....-....+....+... . .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4568899999999999999999998653212222221222111 1 11 12334799999999654
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=4.3e-07 Score=68.00 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=61.7
Q ss_pred CCChhhHhhccccCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc--CHHHHHHH
Q psy8700 66 HQFPAMQRLSISKGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV--SAAEGEAE 142 (200)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~ 142 (200)
++.+.+.+..+.++|.+++|+|+.+|.. ...+..++..... ...|.+||+||+|+.+..+. ........
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--------~~~~~vivlnK~DL~~~~~~~~~~~~~~~~ 145 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--------NDIQPIICITKMDLIEDQDTEDTIQAYAED 145 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--------TTCEEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEECCccCchhhhHHHHHHHHHH
Confidence 3445566668899999999999997764 3333333322222 34789999999999765321 11222333
Q ss_pred HHHhCCcEEEecccCCCcHHHHHH
Q psy8700 143 AKMWGCHFMETSAKTNHNVKELFA 166 (200)
Q Consensus 143 ~~~~~~~~~~vSa~~~~~i~~~~~ 166 (200)
....|++++.+||.++.|++++++
T Consensus 146 y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 146 YRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHTCCEEECCHHHHTTCTTTGG
T ss_pred HHhCCCeEEEEecCCCCCHHHHHh
Confidence 445688999999999888776654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.40 E-value=6.2e-07 Score=70.17 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=50.9
Q ss_pred EEEEEEEeCCCCCC--Ch-hhHhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700 54 ICTLQITDTTGSHQ--FP-AMQRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125 (200)
Q Consensus 54 ~~~~~~~D~~G~~~--~~-~~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 125 (200)
.+.+.++||||... .. .+... .....+.+++|+|....... ......+.+.. .+..||+||
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~--------~~~gVIlTK 247 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS--------PIGSVIITK 247 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC--------SSEEEEEEC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc--------CCcEEEEec
Confidence 45788999999543 11 11111 11245899999998765332 22233333333 467899999
Q ss_pred CCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 126 CDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
.|.... .-.........+.|+..++.
T Consensus 248 lD~~a~----~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 248 MDGTAK----GGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp GGGCSC----HHHHHHHHHHHTCEEEEEEC
T ss_pred cccccc----chHHHHHHHHHCCCEEEEEC
Confidence 996432 11233344457888887775
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.32 E-value=2.8e-06 Score=63.47 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred EEEEEEEeCCCCCC--Chh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEee
Q psy8700 54 ICTLQITDTTGSHQ--FPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGN 124 (200)
Q Consensus 54 ~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 124 (200)
.+.+.++||||... ... +.. .....+|.+++|+|..... +... .+.... +..| ..+|+|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~---~~~~~~------~~~~i~gvVln 247 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD---LASKFN------QASKIGTIIIT 247 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH---HHHHHH------HTCTTEEEEEE
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH---HHHHHH------hhCCCCEEEEe
Confidence 45799999999776 322 221 1234689999999986432 2111 122222 1144 678999
Q ss_pred CCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162 (200)
Q Consensus 125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 162 (200)
|.|.... .-.........+.|+..++ .|++++
T Consensus 248 k~D~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 248 KMDGTAK----GGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp CGGGCTT----HHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred CCCCCcc----hHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 9996432 1123345556778888776 455553
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=1.1e-06 Score=64.52 Aligned_cols=94 Identities=11% Similarity=-0.020 Sum_probs=62.2
Q ss_pred CCCCCC-ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH
Q psy8700 62 TTGSHQ-FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE 140 (200)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 140 (200)
.||+.. ........+.++|+++.|+|+.++.+..... +. + . ..|.++|+||+|+.+... .....
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---------l-~k~~iivlNK~DL~~~~~--~~~~~ 68 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---------S-RKETIILLNKVDIADEKT--TKKWV 68 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---------T-TSEEEEEEECGGGSCHHH--HHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---------c-CCCcEEEEECccCCCHHH--HHHHH
Confidence 366543 3456677888999999999999887654311 00 0 1 479999999999976422 11223
Q ss_pred HHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700 141 AEAKMWGCHFMETSAKTNHNVKELFAELLNL 171 (200)
Q Consensus 141 ~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~ 171 (200)
.+....+.++ .+||+++.|+.++++.+...
T Consensus 69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 3334457788 99999999999998877553
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=8.1e-06 Score=61.78 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCCChhh-Hhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 56 TLQITDTTGSHQFPAM-QRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~~-~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.+.++|++|....... ... ..-..|-.++++|..... +.......+.... ...+|++||.|..
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--------~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--------KIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--------CCCEEEEECGGGC
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--------CCCEEEEeCcCCc
Confidence 5678999996432211 110 111368888999976543 2223333333333 2448899999952
Q ss_pred cccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700 130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNV 161 (200)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i 161 (200)
.. . -.........+.|+..++ .|+++
T Consensus 282 a~---~-G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 282 AR---G-GAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp SC---C-HHHHHHHHHHTCCEEEEE--CSSST
T ss_pred cc---h-hHHHHHHHHHCCCEEEEe--CCCCc
Confidence 21 1 123345556788888877 55544
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.14 E-value=1.1e-05 Score=61.62 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=54.8
Q ss_pred ccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHhCCcEEE
Q psy8700 75 SISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMWGCHFME 152 (200)
Q Consensus 75 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (200)
...++|.+++|.+. +|. +...+..++....... .|.+||+||+|+.+..... ...........|++++.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~~--------~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQ--------VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHHT--------CEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhcC--------CCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEE
Confidence 46789999988765 454 3334444443333333 6889999999997643210 11122233456789999
Q ss_pred ecccCCCcHHHHHHH
Q psy8700 153 TSAKTNHNVKELFAE 167 (200)
Q Consensus 153 vSa~~~~~i~~~~~~ 167 (200)
+|+.++.|++++...
T Consensus 198 ~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEA 212 (358)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred EecCCCcCHHHHHHh
Confidence 999999999988764
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.11 E-value=4e-06 Score=68.67 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
..|+|+|+.|||||||++.+.+-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999875
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.03 E-value=8.5e-05 Score=58.41 Aligned_cols=24 Identities=33% Similarity=0.205 Sum_probs=21.3
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+-.-|+|+|++++|||||+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 446689999999999999999986
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.86 E-value=7.7e-07 Score=70.74 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=55.0
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCC--ChhhH--------h
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ--FPAMQ--------R 73 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~ 73 (200)
.....|+++|.+||||||+.++|...-. ....++...... ......+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999875321 011111100000 0000011112346788888622 22222 4
Q ss_pred hccccCCEEEEEeeCCChhHHHHHHHHHHHHHH
Q psy8700 74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRE 106 (200)
Q Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 106 (200)
.++...++.++|+|.++. +......|+..+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 455567888999999987 34444555554444
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=2.5e-05 Score=53.83 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+++++|++|||||||++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 237
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.69 E-value=3.3e-05 Score=54.19 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE 133 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 133 (200)
.+.+.++|+|+.. .......+..+|.+++++..+... ......+..+..... ..+..++.+|+|+.|....
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~~~vv~N~~~~~~~-- 145 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA---YSRKVEARFLITRKIEMAT-- 145 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC---GGGCCEEEEEECSBCTTEE--
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH---hCCCCcEEEEEeccCCCch--
Confidence 3688999999866 345556677799999998876543 555666655554331 1245677999999995322
Q ss_pred cCHHHHHHHHHHhCCcEE
Q psy8700 134 VSAAEGEAEAKMWGCHFM 151 (200)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (200)
.. .+........+.+++
T Consensus 146 ~~-~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 146 ML-NVLKESIKDTGVKAF 162 (206)
T ss_dssp EE-HHHHHHHHHHTCCBC
T ss_pred HH-HHHHHHHHHcCCcee
Confidence 11 222333344565554
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.66 E-value=0.00012 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~ 28 (200)
+...|+++|.+|+||||++..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999988886
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.64 E-value=3.1e-05 Score=53.41 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|++|||||||++.|.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.58 E-value=4e-05 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999876
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.52 E-value=5.2e-05 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.51 E-value=5.6e-05 Score=52.34 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++|+.|||||||++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999985
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=5.4e-05 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-.|+++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999874
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.48 E-value=8.7e-05 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998876
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.47 E-value=0.00018 Score=56.18 Aligned_cols=86 Identities=17% Similarity=0.116 Sum_probs=47.1
Q ss_pred EEEEEEEeCCCCCCChh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700 54 ICTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127 (200)
Q Consensus 54 ~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 127 (200)
.+.+.++||||...... +.. ......+.+++|+|..... +.......+.... ...-||+||.|
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l--------~i~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV--------GVTGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT--------CCCEEEEESGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC--------CceEEEEeCcC
Confidence 35789999999654321 111 1122578899999976432 2122222222222 13568899999
Q ss_pred CCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 128 ETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
.... .. .........+.|+.++.
T Consensus 249 ~~~~---~g-~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 249 GDAR---GG-AALSARHVTGKPIYFAG 271 (425)
T ss_dssp GCSS---CH-HHHHHHHHHCCCEEEEE
T ss_pred Cccc---HH-HHHHHHHHHCCCEEEEe
Confidence 5321 11 22334556788877665
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.44 E-value=7.6e-05 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-++++|+.|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.44 E-value=8.2e-05 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--|+|+||+|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999863
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.43 E-value=8e-05 Score=52.98 Aligned_cols=21 Identities=33% Similarity=0.760 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.|.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999987
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.43 E-value=8.2e-05 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--++++||.|||||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 45889999999999999999863
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.42 E-value=6.7e-05 Score=51.26 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~ 28 (200)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=9.2e-05 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--|+++||+||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999864
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.38 E-value=0.00011 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.37 E-value=0.00011 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.36 E-value=0.00011 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|+|+|++||||||+++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.35 E-value=0.00016 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.35 E-value=0.00012 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
-.|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999997743
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.34 E-value=0.00013 Score=49.25 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999874
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.34 E-value=0.00012 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00012 Score=49.73 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q psy8700 9 RVVVFGAGGVGKSSLVLRF 27 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l 27 (200)
-|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.00013 Score=49.57 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.30 E-value=0.00014 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--|+++|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999865
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.30 E-value=0.00024 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.|+++|++||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.30 E-value=0.00013 Score=52.54 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999887
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.29 E-value=0.00015 Score=55.39 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
.++++|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999998744
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.28 E-value=0.00016 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....|+++|+.|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998876
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00021 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 267
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.27 E-value=0.0081 Score=42.18 Aligned_cols=66 Identities=8% Similarity=-0.037 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCC-CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700 54 ICTLQITDTTGS-HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129 (200)
Q Consensus 54 ~~~~~~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 129 (200)
.+.+.++|+|+. ... .....+..+|.+++++.. +..++..+...+..+.... ..++.+|+|+.|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~-------~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG-------NNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC-------SSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc-------CCCEEEEEEecCCc
Confidence 367899999986 432 344566788998888875 4456666666666665532 25688999999864
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00025 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=22.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+.....|+|+|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998864
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.25 E-value=0.00018 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~ 28 (200)
.-.|+++|++||||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 270
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00024 Score=49.88 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.-.....|+++|++||||||+.+.|...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3345578999999999999999998763
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.24 E-value=0.00017 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999876
No 272
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.23 E-value=0.00021 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.22 E-value=0.0002 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.21 E-value=0.00023 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+|+|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999865
No 275
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.21 E-value=0.00016 Score=51.62 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999877
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.00022 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 277
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.20 E-value=0.00023 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.00024 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 279
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.19 E-value=0.00034 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.4
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
....|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988654
No 280
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.19 E-value=0.00031 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+++|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.0002 Score=52.39 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.19 E-value=0.0002 Score=52.76 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999987
No 283
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.18 E-value=0.00022 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+|+++|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 284
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=0.00022 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=20.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+|.|++||||||+.+.|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.18 E-value=0.00024 Score=48.70 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-++++|++|||||||+++|..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999986
No 286
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00026 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.18 E-value=0.00022 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 288
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.17 E-value=0.00019 Score=49.25 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++++|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.17 E-value=0.00022 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++++|+.|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999876
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.17 E-value=0.00024 Score=51.22 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999977
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.17 E-value=0.00024 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
=.++|+|++|||||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999999876
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.17 E-value=0.00038 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....+-|+++|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988854
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.16 E-value=0.00038 Score=51.72 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
......|+|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45668899999999999999988754
No 294
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.16 E-value=0.00027 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 295
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.00028 Score=49.23 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.15 E-value=0.00022 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999987
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.14 E-value=0.00022 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 298
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00037 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 299
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.14 E-value=0.00027 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999977
No 300
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00033 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 301
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.14 E-value=0.00024 Score=51.87 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999987
No 302
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.14 E-value=0.00027 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999987
No 303
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.13 E-value=0.00025 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00031 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 305
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.13 E-value=0.00033 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.13 E-value=0.00024 Score=49.10 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 307
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.13 E-value=0.00025 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999999987
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=0.00037 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--|+++|++||||||+.+.|.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.13 E-value=0.00015 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHh-hC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFV-KG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~-~~ 30 (200)
-++++|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.00024 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhhCC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
.++++|++|||||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998743
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.12 E-value=0.00038 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.12 E-value=0.0004 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....-|+|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4556899999999999999999876
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.11 E-value=0.00044 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 314
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.11 E-value=0.00043 Score=51.79 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCCChh------------hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700 56 TLQITDTTGSHQFPA------------MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123 (200)
Q Consensus 56 ~~~~~D~~G~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 123 (200)
.+.+.||+|...... +.+......+.+++++|........ .....+....+ ..+|++
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~--------~t~iiv 254 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAVG--------LTGVIV 254 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHHC--------CSEEEE
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHcC--------CcEEEE
Confidence 467899999643221 1122344567788899977654322 22233333332 358899
Q ss_pred eCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700 124 NKCDETENREVSAAEGEAEAKMWGCHFMETS 154 (200)
Q Consensus 124 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 154 (200)
||.|.... .. .........+.|+.+++
T Consensus 255 Th~d~~a~--gg--~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 255 TKLDGTAK--GG--VLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp ECTTSSCC--CT--THHHHHHHHCCCEEEEE
T ss_pred ECCccccc--cc--HHHHHHHHHCCCeEEEe
Confidence 99985422 11 22344556788877776
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.00035 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 316
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00027 Score=51.52 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999987
No 317
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00027 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999987
No 318
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.11 E-value=7.7e-05 Score=55.84 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-.++++|++|||||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999999864
No 319
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.11 E-value=0.00029 Score=51.19 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
No 320
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.10 E-value=0.00028 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999987
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.10 E-value=0.00039 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.00042 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 323
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.08 E-value=0.00037 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 324
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.08 E-value=0.00032 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999884
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.08 E-value=0.00033 Score=51.24 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999987
No 326
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.00032 Score=50.52 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~ 28 (200)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 327
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.07 E-value=0.00031 Score=52.50 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~ 28 (200)
-.++++|++|||||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999998
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.00046 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....|++.|++||||||+.+.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.06 E-value=0.00031 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999987
No 330
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.06 E-value=0.0008 Score=52.83 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=37.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh------------------CCCC--CCcCCCcccceeEE----EE-eCCcEEEEEEE
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK------------------GTFR--ESYIPTIEDTYRQV----IS-CNKNICTLQIT 60 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~------------------~~~~--~~~~~~~~~~~~~~----~~-~~~~~~~~~~~ 60 (200)
+-.=|+|+|+.++|||+|+|.|+. ..|. ....+.+.+.+-+. +. .++..+.+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 345667999999999999996641 1221 12222233333221 11 15667899999
Q ss_pred eCCCCCC
Q psy8700 61 DTTGSHQ 67 (200)
Q Consensus 61 D~~G~~~ 67 (200)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999543
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.05 E-value=0.00036 Score=50.71 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
......|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998864
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.05 E-value=0.00036 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 579999999999999999987
No 333
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.05 E-value=0.00033 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999987
No 334
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00033 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.04 E-value=0.00046 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+++|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999876
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.04 E-value=0.00031 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 337
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.04 E-value=0.0005 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
...|++.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999763
No 338
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.04 E-value=0.00035 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 339
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.03 E-value=0.00033 Score=52.39 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999998876
No 340
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00038 Score=47.52 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 341
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.02 E-value=0.00036 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999877
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00018 Score=49.23 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|++|||||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.02 E-value=0.00034 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-+++++|+.|||||||++.|.+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.01 E-value=0.0004 Score=51.18 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999976
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00034 Score=46.66 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|++|+|||||++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.99 E-value=0.00059 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.99 E-value=0.00052 Score=47.84 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
+.....|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999998764
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.99 E-value=0.00052 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 349
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.99 E-value=0.00045 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999987
No 350
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.00058 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...++++|++|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.98 E-value=0.00052 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.97 E-value=0.00053 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.97 E-value=0.00047 Score=47.79 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.96 E-value=0.00063 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.9
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....|+|+|++||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 355
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.96 E-value=0.0006 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.96 E-value=0.00037 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=16.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.96 E-value=0.00045 Score=52.83 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 358
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.0005 Score=50.01 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.94 E-value=0.00053 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=19.0
Q ss_pred CceE-EEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYR-VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~k-i~~~G~~~~GKSsli~~l~~ 29 (200)
...| |+++|+|||||+|...+|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445 45789999999999988864
No 360
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.92 E-value=0.00062 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00057 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 362
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.91 E-value=0.0007 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.2
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 363
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.90 E-value=0.00056 Score=52.35 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 478999999999999999887
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.90 E-value=0.00058 Score=49.50 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999986
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.89 E-value=0.00066 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.0009 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...-|+++|.+||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 367
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.00048 Score=52.63 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 468999999999999999987
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.88 E-value=0.00076 Score=49.84 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998863
No 369
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.87 E-value=0.00068 Score=45.95 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.87 E-value=0.00066 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 371
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.87 E-value=0.0006 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-++++|+.|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999873
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.86 E-value=0.00054 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.86 E-value=0.00063 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.86 E-value=0.00062 Score=52.40 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 468999999999999999987
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.86 E-value=0.00085 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999865
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.85 E-value=0.00063 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 478999999999999999987
No 377
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.85 E-value=0.00057 Score=50.76 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999877
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.85 E-value=0.00085 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.85 E-value=0.00022 Score=50.19 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.85 E-value=0.0009 Score=46.57 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+-+.+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999998865
No 381
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.00066 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 468999999999999999987
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.84 E-value=0.00087 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~ 28 (200)
..|+++|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.84 E-value=0.00071 Score=46.45 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988854
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.84 E-value=0.00063 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++++|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999876
No 385
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.80 E-value=0.00074 Score=51.92 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 468999999999999999987
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.80 E-value=0.00073 Score=51.97 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3789999999999999999873
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.00082 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999988763
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.79 E-value=0.0011 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.78 E-value=0.00064 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 390
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.77 E-value=0.0008 Score=50.99 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999876
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.77 E-value=0.00066 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.++++|+.|||||||++.+.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.77 E-value=0.00078 Score=52.64 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++|+|+.|||||||++.+++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 393
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.76 E-value=0.0016 Score=46.65 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...-|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.001 Score=47.78 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..+.|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998863
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.75 E-value=0.00089 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 396
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.74 E-value=0.001 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
...-|+|.|+.||||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998774
No 397
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.74 E-value=0.0009 Score=49.24 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999986
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.72 E-value=0.0012 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=19.6
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+.-.|++.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998854
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.71 E-value=0.00061 Score=51.91 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 478999999999999999987
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.0011 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|+++|++||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.66 E-value=0.00089 Score=53.68 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|++||||||+++.+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0011 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--++++|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999864
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0011 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 404
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.63 E-value=0.00097 Score=51.58 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 479999999999999999876
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.62 E-value=0.00084 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
--++++|+.|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.0013 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.+++.|++|+|||++++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999876
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.60 E-value=0.00059 Score=52.11 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|+.|||||||++.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999987
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.60 E-value=0.0012 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.635 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--|+|+|+.|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999864
No 409
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.0013 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 410
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.59 E-value=0.0017 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.58 E-value=0.0011 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 412
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.57 E-value=0.0019 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999987654
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.56 E-value=0.0019 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.3
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+.-+++.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999875
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.56 E-value=0.0015 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 415
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.56 E-value=0.0021 Score=47.99 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
......-|+|+||+|||||+|...|..
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHH
Confidence 344455688999999999999999865
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.55 E-value=0.0015 Score=46.58 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998865
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.0011 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999988653
No 418
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.53 E-value=0.002 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
No 419
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.53 E-value=0.0014 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
--++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999876
No 420
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.53 E-value=0.0018 Score=46.27 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+-+..+++++|+|||||||+..+|..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 44568999999999999999998854
No 421
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.0023 Score=51.66 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
|.....=-++++|+.|||||||++.+.+-
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 33334445799999999999999999873
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.50 E-value=0.0017 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.48 E-value=0.0016 Score=44.60 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.+|+|+.|||||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 424
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.47 E-value=0.0016 Score=49.61 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-+++++|+.|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999884
No 425
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.47 E-value=0.0013 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.+++.||||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 426
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0013 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-.++++|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998763
No 427
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.37 E-value=0.0026 Score=51.90 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999877
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.37 E-value=0.0023 Score=52.21 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999877
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.37 E-value=0.0021 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 430
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.35 E-value=0.0024 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
...|++.|++|+|||++++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998764
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.35 E-value=0.0021 Score=51.01 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999865
No 432
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.34 E-value=0.0025 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
=.++++|+.|||||||++.+.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999998876
No 433
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.33 E-value=0.0024 Score=44.53 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 434
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.32 E-value=0.0016 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.5
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..+-|++.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988754
No 435
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.32 E-value=0.0024 Score=52.23 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999877
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.30 E-value=0.0029 Score=44.10 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
..|+++|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998754
No 437
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.30 E-value=0.0025 Score=45.20 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 438
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.0026 Score=44.54 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
+++.|++|+|||++++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998875
No 439
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.29 E-value=0.0026 Score=42.32 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHh
Q psy8700 10 VVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~ 28 (200)
.+++|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999975
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.29 E-value=0.0026 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.29 E-value=0.0024 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--+++.|++|+|||++++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34589999999999999999876
No 442
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.27 E-value=0.0033 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 44699999999999999999976
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.0036 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...-|+++|++||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.26 E-value=0.0036 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999876
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.25 E-value=0.0025 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHhhC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~ 30 (200)
=+++++|+.|||||||++.+.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999873
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.24 E-value=0.0023 Score=47.05 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 447
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.23 E-value=0.0035 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5689999999999999998864
No 448
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.23 E-value=0.0021 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999998876
No 449
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.21 E-value=0.003 Score=47.27 Aligned_cols=86 Identities=20% Similarity=0.131 Sum_probs=47.5
Q ss_pred EEEEEEeCCCCCCChhhH-------hhcc-----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700 55 CTLQITDTTGSHQFPAMQ-------RLSI-----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122 (200)
Q Consensus 55 ~~~~~~D~~G~~~~~~~~-------~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 122 (200)
+.+.++||||........ ...+ ...+.+++|+|..... +.+... ..+.+.. ...-+|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a-~~~~~~~--------~i~gvV 255 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQA-KIFKEAV--------NVTGII 255 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHH-HHHHHHS--------CCCEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHH-HHHHhcC--------CCCEEE
Confidence 468999999964332211 1111 2478889999886332 222221 2222222 234678
Q ss_pred eeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSA 155 (200)
Q Consensus 123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 155 (200)
+||.|... ..- .........+.|+.+++.
T Consensus 256 lTk~D~~~--~gG--~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 256 LTKLDGTA--KGG--ITLAIARELGIPIKFIGV 284 (306)
T ss_dssp EECGGGCS--CTT--HHHHHHHHHCCCEEEEEC
T ss_pred EeCCCCcc--chH--HHHHHHHHHCCCEEEEeC
Confidence 89999532 222 245556677888877764
No 450
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.21 E-value=0.0025 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~ 28 (200)
.-.|+++|++|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999875
No 451
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0029 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
--|++.||||+|||+|++++.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999976
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0029 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999873
No 453
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.18 E-value=0.0043 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|++|||||||...|..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 454
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.003 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
--+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999876
No 455
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.16 E-value=0.005 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999998875
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.15 E-value=0.0048 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 5 SNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 5 ~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.....+++.|++|+|||++++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4456799999999999999999876
No 457
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.0051 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.1
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
....|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999987643
No 458
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.14 E-value=0.005 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCCCceEEEEECCCCCCHHHHHHHH
Q psy8700 3 EQSNDYRVVVFGAGGVGKSSLVLRF 27 (200)
Q Consensus 3 ~~~~~~ki~~~G~~~~GKSsli~~l 27 (200)
++...++|.+.|++|+||||++-.+
T Consensus 2 ~~~g~l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 2 NARGRLKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp -CCCCEEEEEESSTTSSHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHH
Confidence 4567899999999999999996655
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0043 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+-.|++.||||+|||+|++++.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 460
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=0.0031 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
.++++|+.|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998876
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.0043 Score=47.08 Aligned_cols=20 Identities=20% Similarity=0.680 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.0035 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-+++.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999877754
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.003 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.0
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+...|+|.|.+||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.04 E-value=0.0038 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999873
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.0038 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--|++.|+||+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999976
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.0038 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998763
No 467
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0039 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+--|++.||||+|||+|++++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.0036 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 469
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.02 E-value=0.0039 Score=42.78 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHhhC
Q psy8700 10 VVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~~ 30 (200)
|+|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999864
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.01 E-value=0.0043 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0053 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+--|++.||||+|||+|++++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999976
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0048 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|++.|.+||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 473
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.01 E-value=0.0042 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999865
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.99 E-value=0.0048 Score=42.02 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVKGT 31 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~~~ 31 (200)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998754
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.98 E-value=0.0047 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|++.|++||||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998854
No 476
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.96 E-value=0.0044 Score=47.55 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHh
Q psy8700 10 VVVFGAGGVGKSSLVLRFV 28 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~ 28 (200)
.+++|+.|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.95 E-value=0.0047 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999873
No 478
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.004 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--+++.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 479
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.92 E-value=0.0047 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 480
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.91 E-value=0.0051 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
...|+++|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988754
No 481
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.89 E-value=0.0085 Score=42.19 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.9
Q ss_pred CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700 4 QSNDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 4 ~~~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
+-+.+-|+++|..||||||+.+.|..
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH
Confidence 45679999999999999999998865
No 482
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.89 E-value=0.0042 Score=47.35 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.88 E-value=0.0039 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=17.1
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|+|.|++||||||+++.|..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.86 E-value=0.0058 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-|+|+||+|||||||...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 3578999999999999999975
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0051 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhhC
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVKG 30 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~~ 30 (200)
.++++|+.|||||||++.+.+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3799999999999999999874
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.85 E-value=0.0071 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.+++.|+||+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999999876
No 487
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.0024 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..|++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4589999999999999988755
No 488
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0054 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--|++.||||+|||+|++++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHH
Confidence 35699999999999999999976
No 489
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.0056 Score=46.34 Aligned_cols=20 Identities=35% Similarity=0.740 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.80 E-value=0.0024 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhh
Q psy8700 9 RVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 9 ki~~~G~~~~GKSsli~~l~~ 29 (200)
-+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999875
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.73 E-value=0.0059 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--++++|++|+|||||++.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.72 E-value=0.0063 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
-.|++.|++|+|||+|++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999876
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.72 E-value=0.0051 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
=+|+++|+.|||||||++.|.+
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3799999999999999998876
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.71 E-value=0.0066 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 495
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0055 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.--|++.||||+|||+|++++.+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHh
Confidence 45799999999999999999976
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.68 E-value=0.0057 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
--+++.|+||+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 497
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.68 E-value=0.01 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHhh
Q psy8700 8 YRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 8 ~ki~~~G~~~~GKSsli~~l~~ 29 (200)
.-|+|+|++|||||||...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 498
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.0055 Score=46.85 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=20.7
Q ss_pred CceEEEEECCCCCCHHHHHHHHhh
Q psy8700 6 NDYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 6 ~~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-.+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999999875
No 499
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.67 E-value=0.0064 Score=48.59 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhh
Q psy8700 10 VVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 10 i~~~G~~~~GKSsli~~l~~ 29 (200)
++++|++|+|||+|++.+.+
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999876
No 500
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.67 E-value=0.0062 Score=43.76 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCCHHHHHHHHhh
Q psy8700 7 DYRVVVFGAGGVGKSSLVLRFVK 29 (200)
Q Consensus 7 ~~ki~~~G~~~~GKSsli~~l~~ 29 (200)
..-|++.|++||||||+++.|..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
Done!