RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8700
(200 letters)
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 274 bits (704), Expect = 3e-95
Identities = 145/202 (71%), Positives = 170/202 (84%), Gaps = 6/202 (2%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPTIEDTYRQVISC+K++CTLQIT
Sbjct: 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 61
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DTTGSHQFPAMQRLSISKGHAFILV+S TS+QSLEEL PI+++I + KG + IP+M
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVM 118
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
LVGNKCDET+ REV E +A A+ W C FMETSAK N+NVKELF ELL LE RN+SL
Sbjct: 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177
Query: 181 LEKK--GQLKGTRKLKEKCSVM 200
++ K G+ K T ++K KC++M
Sbjct: 178 IDGKRSGKQKRTDRVKGKCTLM 199
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 261 bits (669), Expect = 2e-90
Identities = 141/175 (80%), Positives = 152/175 (86%), Gaps = 3/175 (1%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
SNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQITDTTG
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
SHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG IPIMLVGN
Sbjct: 61 SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---IPIMLVGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
KCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SL
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 172
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 253 bits (648), Expect = 5e-87
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
MP QS ++ + G VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N LQ+
Sbjct: 1 MP-QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 59
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DT G ++ + + +ILVYS TS +S E ++ I + + G IPIM
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIM 115
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
LVGNK D R +S EG+A A+ W F+E+SAK N ++F ++ + + +
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175
Query: 181 LEKK 184
K
Sbjct: 176 QGKS 179
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 251 bits (643), Expect = 3e-86
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 8/196 (4%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
S +Y++VV GA GVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGN
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
KCD +R V + + A+ +G F+ETSAKT V + F L+ + + + K
Sbjct: 118 KCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGK 176
Query: 185 GQLKGTRKLKEKCSVM 200
K +K K KC +M
Sbjct: 177 ---KKKKKSKTKCVIM 189
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 252 bits (645), Expect = 3e-86
Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 7/196 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 130
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQL 187
+ R+VS E + A+ W +++ETSAKT NV ++F +L+ + R + EK G+
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKK 190
Query: 188 KG---TRKLKEKCSVM 200
K ++++E+C ++
Sbjct: 191 KRKSLAKRIRERCCIL 206
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 247 bits (633), Expect = 6e-85
Identities = 80/163 (49%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y+VVV G+GGVGKS+L ++FV GTF E Y PTIED YR+ I + + L+I DT G+
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
QF +M+ L I G FILVYS ++QS ++++P+ + I K +P++LVGNK
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK----VPVILVGNKV 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D REVS++EG A A+ WGC FMETSAK+ V ELFAE++
Sbjct: 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 246 bits (630), Expect = 3e-84
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P S +++VV G GGVGKS+L ++F++ F Y PTIED+Y ++ S + L I D
Sbjct: 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
T G +F AM+ + GH F+LV++ RQS E+ ++ I K + P++L
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD----FPVVL 119
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
VGNK D R+V +E A + E SAK NV E F +L+ +
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 246 bits (630), Expect = 4e-84
Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 17/200 (8%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
MP +VV+ G VGK+SL +FV+G F E Y PT+E+TY ++++ K+ L +
Sbjct: 19 MP-LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLV 77
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DT G ++ + I H ++LVYS TS S + + +++ + E G +P++
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR----VPVV 133
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
LVGNK D + REV A EG+ A+ WG FME+SA+ N + +F +++ +
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQ---------E 184
Query: 181 LEKKGQLKGTRKLKEKCSVM 200
+ + + + + +C +M
Sbjct: 185 IARV---ENSYGQERRCHLM 201
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 241 bits (617), Expect = 2e-82
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
+ R+VS E + A+ W +++ETSAKT NV ++F +L+ + R +
Sbjct: 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 240 bits (616), Expect = 2e-82
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
++V++ G+GGVGKS+L L+F+ F E Y PT D+YR+ + + + I DT G
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ A++ G F+ V+S T +S E I K N +P +LVGNK D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+ R+VS E + A W +++ETSAKT NV ++F +L+ + R
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 240 bits (614), Expect = 4e-82
Identities = 70/165 (42%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
+Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ + + C L+I DT G+
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
QF AM+ L + G F LVYS T++ + +L+ + E I K + +P++LVGNK
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED----VPMILVGNK 117
Query: 126 CDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
CD + R V +G+ A+ W C F+E+SAK+ NV E+F +L+
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 238 bits (610), Expect = 3e-81
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
E Y++VV G GGVGKS+L ++F + F + Y PTIED+Y + + L + D
Sbjct: 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLD 72
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
T G +F AM+ + G F++VYS T + S E + ++I K + P++L
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES----FPMIL 128
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNLEKNR 175
V NK D R+V+ +G+ A + ++ETSAK NV + F +L+ + + +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 237 bits (608), Expect = 4e-81
Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
YRVV+ G GVGK+SL F R+ + ED Y + ++ + TL + DT + +
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 68 FP--AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
Q + G A+++VYS R S E + +R T + +PI+LVGNK
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH----VPIILVGNK 120
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
D REVS EG A A ++ C F+ETSA HNV ELF ++ + R
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 237 bits (607), Expect = 5e-81
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
Y+V++ GA GVGKS+L F G TY + I + +L + D
Sbjct: 3 YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
+ ++ G A+++VYS T + S E+ + +R + + +PI+LVGNK D
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD----VPIILVGNKSD 117
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+REVS EG A A ++ C F+ETSA +HNV+ LF ++ + R
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 237 bits (607), Expect = 1e-80
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
+Y++VV GAGGVGKS+L ++ ++ F + Y PTIED+YR+ + + C L I DT G
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ AM+ + G F+ V++ + +S ++ E I+ K + +P++LVGNK
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD----VPMVLVGNK 135
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
CD R V + AK +G F+ETSAKT V++ F L+ + +
Sbjct: 136 CDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 187
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 236 bits (604), Expect = 1e-80
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+Y++VV GAGGVGKS+L ++ ++ F + PTIED+YR+ + + C L I DT G
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
++ AM+ + G F+ V++ + +S E++ E I+ K + +P++LVGNK
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKS 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D R V + + + A+ +G ++ETSAKT V++ F L+
Sbjct: 119 DLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 236 bits (605), Expect = 2e-80
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT 62
+ + + + G G GKS+L ++F+ F Y P +EDTY + + L++ DT
Sbjct: 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
+R ++ HAF++VYS SRQS + E++ SIP +L+
Sbjct: 77 ADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR--SIPALLL 133
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN-HNVKELFAELL 169
GNK D + R+V+ AEG A A +GC F E SA + +V+ +F E +
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 233 bits (597), Expect = 5e-79
Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
+S + ++ +FG GVGKS+LV+RF+ F Y PT+E TYR + + + +++I DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA 84
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G + + + G F+LVY T R S EE+ P+ ++ E K N + ++LVG
Sbjct: 85 G-QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN----VTLILVG 139
Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNLEKNRNIS 178
NK D +R+VS EGE A C F E SA T N+ E+F EL + R +
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMV 195
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 230 bits (590), Expect = 4e-78
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITD 61
++ ++V++ G GVGKS+L F ++ P EDTY + I +K TL + D
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78
Query: 62 TTGSHQFPAMQR-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
R + G AF++V+S T R+S ++ +R + + +P++
Sbjct: 79 IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD----LPVI 134
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
LVGNK D +REVS EG A C +ETSA +HN +ELF + R I L+
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV-----RQIRLR 189
Query: 181 LEKK 184
+
Sbjct: 190 RGRN 193
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 228 bits (584), Expect = 2e-77
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNICTLQITDTTGSH 66
++V++ G GVGKS+L F ++ EDTY + I +K TL + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 67 QFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+Q + G AF++V+S T R+S ++ +R + + +P++LVGNK
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD----LPVILVGNK 118
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D +REVS EG A C +ETSA +HN +ELF + + R
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 218 bits (557), Expect = 8e-73
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 1 MPEQSND--YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCNKNICT 56
+ +S + YRVV+ G GVGKS+L F V + EDTY + + + T
Sbjct: 29 ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88
Query: 57 ---LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
L + + G +++ + + G A+++VYS T R S E+ + +R + +
Sbjct: 89 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED- 145
Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
IPI+LVGNK D REVS +EG A A ++ C F+ETSA HNVKELF ++
Sbjct: 146 ---IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV---- 198
Query: 174 NRNISLQLEKKGQ 186
R + L+ + K +
Sbjct: 199 -RQVRLRRDSKEK 210
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 208 bits (532), Expect = 2e-69
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESY--IPTIEDTYRQVISCNKNICT---LQIT 60
YRVV+ G GVGKS+L F EDTY + + + T L +
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
+ G +++ + + G A+++VYS T R S E+ + +R + + IPI+
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED----IPII 118
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
LVGNK D REVS +EG A A ++ F+ETSA HNVKELF ++ + R S +
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
Query: 181 LEKKGQLKGTRK 192
++ RK
Sbjct: 179 KNERRLAYQKRK 190
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 205 bits (523), Expect = 5e-68
Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 19/184 (10%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
Q + +V + G GKS+LV R++ GT+ + P +++ I + L I D
Sbjct: 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEG 75
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
G + A + V+S S + + + + + + +P++LVG
Sbjct: 76 GPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE----VPMVLVG 126
Query: 124 NKCD--ETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
+ R + + + C + ET A NV+ +F ++ + + +
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA-----QKV-VA 180
Query: 181 LEKK 184
L KK
Sbjct: 181 LRKK 184
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 201 bits (513), Expect = 1e-66
Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 13/182 (7%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+ R+ V G GKSSL+ RF+ G++ + T + Y++ + + + I + G+
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
A I V+S S + + + + +G ++ ++ ++
Sbjct: 66 DAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 127 DETENREVSAAEGEA-EAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
+ R V A A A M C + ET A NV +F E+ + + + L K+
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA-----QKV-VTLRKQQ 174
Query: 186 QL 187
QL
Sbjct: 175 QL 176
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 147 bits (373), Expect = 5e-45
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
S + V G G VGK+ +++ + F YIPT+ D + ++ + I L + DT G
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLV 122
+ ++ LS F+L +S S+ S E + W E+ R +PI+LV
Sbjct: 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-------VPIVLV 119
Query: 123 GNKCDETENRE--------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLN--L 171
G K D +++ +++ +GE K G ++E S+KT NVK +F + L
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 172 EKNRNISLQLEKKGQLKGTRKLKEKCSV 199
+ R K+ + + CS+
Sbjct: 180 QPPR------RKEVPRRRKNHRRSGCSI 201
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 143 bits (363), Expect = 6e-44
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 8/174 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
++VV G G GK+SL F + TF + Y TI + R++ TLQI D G
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
M I +LVY T+ QS E L + V+++ + + LVGNK
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET--QPLVALVGNK 124
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNR 175
D R + + + G SAKT +V F AE+L ++ N+
Sbjct: 125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 141 bits (359), Expect = 3e-43
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+++V G VGK+SL+ RF+ +F +Y TI + + + ++ + LQ+ DT G
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 73
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+F ++ I ++VY T+ S + W I + + + IMLVGNK
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-W--IDDVRTERGS--DVIIMLVGNK 128
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D ++ R+VS EGE +AK F+ETSAK +NVK+LF +
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 143 bits (362), Expect = 3e-43
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 11/172 (6%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--ED-TYRQVISCNKNICTL 57
+ + ++ + G GGVGK++ + R + G F ++Y T+ + + I
Sbjct: 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI-KF 63
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
+ DT G + ++ + IL + TSR + + L W ++E +
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARW--VKEFQAVVGN--EA 118
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
PI++ NK D +++S K + E SAKT HN F L
Sbjct: 119 PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 141 bits (359), Expect = 4e-43
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
DY ++++ G GVGKS L+LRF T+ ESYI TI + R + K I LQ
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQ 68
Query: 59 ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G +F + S +G H I+VY T ++S ++ W ++E A+E ++
Sbjct: 69 IWDTAGQERFRTITS-SYYRGAHGIIVVYDVTDQESFNNVKQ-W--LQEIDRYASE--NV 122
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+LVGNKCD T + V + A G F+ETSAK NV++ F + K R
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 141 bits (357), Expect = 5e-43
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
++VV+ G G VGK+SLVLR+ + F + +I T+ +++ K + L I DT G
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN-LAIWDTAGQ 65
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+F A+ + + ILVY T S ++++ W ++E + I + +VGNK
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-W--VKELRKMLGN--EICLCIVGNK 120
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D + R VS E E+ A+ G TSAK N ++ELF +L
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 140 bits (356), Expect = 6e-43
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
++VV G G VGKSS++ R+ KG F + Y TI + RQ+ ++++ L + DT G
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV-RLMLWDTAGQ 64
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+F A+ + A +LV+S T R+S E + W + + IP LV NK
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-W--REKVVAEVGD---IPTALVQNK 118
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D ++ + E E AK F TS K + NV E+F L +
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 141 bits (358), Expect = 6e-43
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 8/170 (4%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
+ ++VV G G VGK+ L+L F KG +Y+PT+ + + V+ L +
Sbjct: 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLW 76
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DT G ++ ++ LS + +L ++ +R S + + W E K + + + +
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKW--EPEIK---HYIDTAKTV 131
Query: 121 LVGNKCD--ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
LVG K D + + +V+ EG+ + GC ++E S+ + E+F +
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 141 bits (358), Expect = 6e-43
Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 1 MPEQSNDYR--VVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTL 57
+P S V + G GVGKSS+V RFV+ F + PTI + + C +
Sbjct: 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G +F ++ + A ++VY T + S L+ W ++E K E +I
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-W--VKELKEHGPE--NI 129
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ + GNKCD ++ REV + + A+ G +ETSAK N++ELF +
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 141 bits (357), Expect = 7e-43
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICT 56
+ + +DY ++++ G VGK+S + R+ +F +++ T+ + + V +K I
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI-K 72
Query: 57 LQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA 115
LQI DT G ++ + + +G F+L+Y +++S ++ W + K + +
Sbjct: 73 LQIWDTAGQERYRTITT-AYYRGAMGFLLMYDIANQESFAAVQD-W--ATQIKTYSWD-- 126
Query: 116 SIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+ ++LVGNKCD + R V A +G A G F E SAK N NVK++F L+++ +
Sbjct: 127 NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 141 bits (358), Expect = 8e-43
Identities = 63/182 (34%), Positives = 93/182 (51%), Gaps = 14/182 (7%)
Query: 1 MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNI 54
M + +Y ++++ G GVGKS L+LRF T+ ESYI TI + R + K I
Sbjct: 23 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82
Query: 55 CTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
LQI DT G +F + S +G H I+VY T ++S ++ W ++E A+E
Sbjct: 83 -KLQIWDTAGQERFRTITS-SYYRGAHGIIVVYDVTDQESFNNVKQ-W--LQEIDRYASE 137
Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
++ +LVGNKCD T + V + A G F+ETSAK NV++ F + K
Sbjct: 138 --NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195
Query: 174 NR 175
R
Sbjct: 196 KR 197
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 140 bits (355), Expect = 9e-43
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+V + G GVGKSS++ RFV+ +F + PTI + V N+ I DT G
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGL 65
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
+F A+ + A I+VY T ++ L+ W +RE + SI + + GNK
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-W--VRELRQHGPP--SIVVAIAGNK 120
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
CD T+ REV + + A F+ETSAK N+ ELF E+
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 140 bits (356), Expect = 1e-42
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
+ ++ +VV+ G GVGK++L+ RF + F TI E + R V+ +
Sbjct: 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV-KA 76
Query: 58 QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
QI DT G ++ A+ + +G +LV+ T Q+ + W ++E A +
Sbjct: 77 QIWDTAGLERYRAITS-AYYRGAVGALLVFDLTKHQTYAVVER-W--LKELYDHAEA--T 130
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
I +MLVGNK D ++ REV E A+ G F+ETSA + NV+ F +L +
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 140 bits (355), Expect = 2e-42
Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICT 56
+P S +++V G VGK+ L RF G F + TI + R V + I
Sbjct: 12 VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI-K 70
Query: 57 LQITDTTGSHQFPAMQRLSISKG-----HAFILVYSCTSRQSLEELRPIWEVIRETKGGA 111
+Q+ DT G +F R S+ + HA + VY T+ S L W I E K
Sbjct: 71 IQLWDTAGQERF----RKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AW--IEECKQHL 123
Query: 112 NELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
IP +LVGNKCD +V + A ETSAK N +V+ +F L
Sbjct: 124 LA-NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
Query: 169 L 169
Sbjct: 183 A 183
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 139 bits (354), Expect = 2e-42
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
++V+ G G GKSSLVLRFVK F E TI + + + + +I DT G
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQ 71
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ ++ + A I+V+ T++ S E + W ++E + N ++ + L GNK
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-W--VQELQAQGNP--NMVMALAGNK 126
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
D + R+V+A + + A+ G FMETSAKT NVKE+F E+
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 140 bits (354), Expect = 2e-42
Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 12/172 (6%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
+ DY +VV+ G GVGKS+L+ RF + F TI E R + K I Q
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQ 81
Query: 59 ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G ++ A+ + +G +LVY + E + W ++E + A+ +I
Sbjct: 82 IWDTAGLERYRAITS-AYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHADS--NI 135
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
IMLVGNK D R V E A A+ G F+ETSA + NV+ F +L
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 140 bits (355), Expect = 2e-42
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 1 MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNI 54
+P S + +V G+ G GKS L+ +F++ F++ TI E R V K +
Sbjct: 15 VPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV 74
Query: 55 CTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
LQI DT G +F ++ R S +G +LVY TSR++ L W + + + A+
Sbjct: 75 -KLQIWDTAGQERFRSVTR-SYYRGAAGALLVYDITSRETYNSL-AAW--LTDARTLASP 129
Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
+I ++L GNK D REV+ E A+ F+ETSA T NV+E F +
Sbjct: 130 --NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Query: 174 NRNISLQLE 182
N+ S +L+
Sbjct: 188 NKIDSGELD 196
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 139 bits (352), Expect = 3e-42
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
+ D+ ++++ G GVGKSSL+LRF TF SYI TI + R V + + LQ
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KLQ 61
Query: 59 ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G +F + + +G H I+VY TS +S ++ W + E ++ +
Sbjct: 62 IWDTAGQERFRTITS-TYYRGTHGVIVVYDVTSAESFVNVKR-W--LHEINQNCDD---V 114
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
+LVGNK D+ E + V + A G ETSAK N NV+E+F + L
Sbjct: 115 CRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174
Query: 178 SLQLEKK 184
+++
Sbjct: 175 DNLAKQQ 181
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 138 bits (351), Expect = 4e-42
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+++V+ G VGKSSLVLRFVKG F E TI + V + + +I DT G
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTV-KFEIWDTAGQ 65
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
++ ++ + A I+VY T+ +S + W ++E + A+ +I I L GNK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NW--VKELQRQASP--NIVIALSGNK 120
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
D R V E ++ A FMETSAKT+ NV E+F +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 139 bits (352), Expect = 4e-42
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
++ +V G G GKS L+ +F++ F++ TI E + + K + LQI DT G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV-KLQIWDTAGQ 69
Query: 66 HQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
+F ++ R S +G +LVY TSR++ L W + + + A++ +I I+L GN
Sbjct: 70 ERFRSVTR-SYYRGAAGALLVYDITSRETYNAL-TNW--LTDARMLASQ--NIVIILCGN 123
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN--LEKNRNISLQLE 182
K D +REV+ E A+ F+ETSA T NV+E F + L K + L E
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183
Query: 183 KKG 185
+ G
Sbjct: 184 RMG 186
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 140 bits (354), Expect = 4e-42
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
+++V G VGK+SL+ RF+ +F +Y TI D + + LQ+ DT G
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ I ++VY T+ S ++ W I + + + IMLVGNK
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-W--IDDVRTERGS--DVIIMLVGNKT 131
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D + R+VS EGE +AK F+ETSAK +NVK+LF +
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 139 bits (353), Expect = 4e-42
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
DY ++++ G VGK+S + R+ +F +++ T+ + + + +K I LQI DT
Sbjct: 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 64
Query: 63 TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
G ++ + + +G FIL+Y T+ +S ++ W + K + + + ++L
Sbjct: 65 AGLERYRTITT-AYYRGAMGFILMYDITNEESFNAVQD-W--STQIKTYSWD--NAQVLL 118
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQL 181
VGNKCD + R VS+ G A G F E SAK N NVK+ F L+++ +
Sbjct: 119 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLD 178
Query: 182 EKKGQLKGTRK 192
+ G ++
Sbjct: 179 TADPAVTGAKQ 189
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 139 bits (353), Expect = 5e-42
Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
DY ++++ G GVGKS L+LRF T+ YI TI + + V K + LQI DT
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KLQIWDT 64
Query: 63 TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
G +F + S +G H I+VY T ++S ++ W ++E A ++ +L
Sbjct: 65 AGQERFRTITS-SYYRGSHGIIIVYDVTDQESFNGVKM-W--LQEIDRYATS--TVLKLL 118
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQL 181
VGNKCD + R V + A F+ETSA + NV++ F + K L
Sbjct: 119 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
Query: 182 EKKGQLKGTRK 192
+ Q K +
Sbjct: 179 NETTQKKEDKG 189
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 138 bits (350), Expect = 7e-42
Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 12/174 (6%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
DY ++++ G GVGK+ ++ RF + F ++I TI + R + K I LQI DT
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KLQIWDT 64
Query: 63 TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
G +F + + +G +LVY T+ +S + +R W IR + A+ + M+
Sbjct: 65 AGQERFRTITT-AYYRGAMGIMLVYDITNEKSFDNIRN-W--IRNIEEHASA--DVEKMI 118
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+GNKCD + R+VS GE A +G FMETSAK N NV+ F L K +
Sbjct: 119 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 138 bits (351), Expect = 7e-42
Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 12/174 (6%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
Y + ++ G GVGKS L+L+F F+ + TI E R V K I LQI DT
Sbjct: 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI-KLQIWDT 77
Query: 63 TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
G F ++ R S +G +LVY T R++ L W + + + ++ ++ IML
Sbjct: 78 AGQESFRSITR-SYYRGAAGALLVYDITRRETFNHLT-SW--LEDARQHSSS--NMVIML 131
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+GNK D R+V EGEA A+ G FMETSAKT NV+E F +
Sbjct: 132 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 138 bits (350), Expect = 9e-42
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
+ + DY ++++ G VGK+S + R+ TF +++ T+ + + V K + LQ
Sbjct: 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV-KLQ 75
Query: 59 ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G ++ + + +G FIL+Y T+ +S ++ W + K + + +
Sbjct: 76 IWDTAGQERYRTITT-AYYRGAMGFILMYDITNEESFNAVQD-W--ATQIKTYSWD--NA 129
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
++LVGNKCD E R V +G+ A+ G F E SAK N +V++ F L++ ++
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 138 bits (349), Expect = 1e-41
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
+ Y + ++ G GVGKS L+ +F + F TI E R + + I L
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KL 66
Query: 58 QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
QI DT G +F A+ R S +G ++VY T R + L W + + + N +
Sbjct: 67 QIWDTAGQERFRAVTR-SYYRGAAGALMVYDITRRSTYNHLSS-W--LTDARNLTNP--N 120
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
I+L+GNK D R+V+ E + A+ G F+E SAKT NV++ F E
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 138 bits (349), Expect = 2e-41
Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 12/189 (6%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
++ ++++ G GVGKSSL+LRF TF TI + + + L
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA-KLA 67
Query: 59 ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
I DT G +F + S +G ILVY T R + +L W + E + I
Sbjct: 68 IWDTAGQERFRTLTP-SYYRGAQGVILVYDVTRRDTFVKLD-NW--LNELETYCTR-NDI 122
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
MLVGNK D+ ENREV EG A+ F+E SAKT V+ F EL+
Sbjct: 123 VNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181
Query: 178 SLQLEKKGQ 186
+ E +
Sbjct: 182 LWESENQNS 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 138 bits (349), Expect = 2e-41
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 12/185 (6%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
DY +VV+ G GVGKS+L+ RF + F TI E R + K I QI DT
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61
Query: 63 TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
G ++ + + +G +LVY + E + W ++E + A+ +I IML
Sbjct: 62 AGQERYRRITS-AYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHADS--NIVIML 115
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQL 181
VGNK D R V E A A+ F+ETSA + NV+E F +L Q+
Sbjct: 116 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
Query: 182 EKKGQ 186
+
Sbjct: 176 ADRAA 180
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 137 bits (348), Expect = 2e-41
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
S+ ++V+ G VGKSS ++R K FRE+ T+ + + +I + L
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT-VL 79
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
Q+ DT G +F ++ + K +L+Y T +S +R W + + A+E ++
Sbjct: 80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-W--VDMIEDAAHE--TV 134
Query: 118 PIMLVGNKCD------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
PIMLVGNK D + V GE A +G F ETSAK N+ E L
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194
Query: 172 EKNR 175
K R
Sbjct: 195 VKKR 198
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 137 bits (348), Expect = 2e-41
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
+ D+ ++V+ G GVGK+ LV RF +G F TI + + V + + L
Sbjct: 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKV-KL 77
Query: 58 QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
QI DT G +F ++ + S + +A IL Y T +S L W +RE + A+
Sbjct: 78 QIWDTAGQERFRSITQ-SYYRSANALILTYDITCEESFRCLPE-W--LREIEQYASN--K 131
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+ +LVGNK D E REVS E ++ +++ETSAK + NV++LF +L +
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 136 bits (346), Expect = 2e-41
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
D ++++ G GVGKS L++RFV+ F S+I TI + + V K + LQI DT
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDT 59
Query: 63 TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
G +F + + +G ILVY T ++ ++ W + AN+ ++L
Sbjct: 60 AGQERFRTITT-AYYRGAMGIILVYDITDERTFTNIKQ-W--FKTVNEHAND--EAQLLL 113
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
VGNK D E R V+A +GEA AK G F+E+SAK + NV E+F L L + +
Sbjct: 114 VGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 137 bits (348), Expect = 3e-41
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 13/181 (7%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
P++ D+ ++V+ G VGK+ +V RF G F E TI + T + + K + L
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV-KL 80
Query: 58 QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
QI DT G +F + + S + + IL Y T R S + W I + + A +
Sbjct: 81 QIWDTAGQERFRTITQ-SYYRSANGAILAYDITKRSSFLSVPH-W--IEDVRKYAGS--N 134
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLNLEKNR 175
I +L+GNK D +E REVS AE ++ A+ + +ETSAK + NV+E F + R
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
Query: 176 N 176
+
Sbjct: 195 H 195
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 137 bits (347), Expect = 3e-41
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI------------EDTYRQ 46
M + DY + + G GVGK+S++ ++ G F +I T+ +
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 47 VISCNKNICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIR 105
+ + I LQ+ DT G +F ++ + + F+L++ T+ QS +R W I
Sbjct: 63 AVGRGQRI-HLQLWDTAGLERFRSLTT-AFFRDAMGFLLLFDLTNEQSFLNVRN-W--IS 117
Query: 106 ETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
+ + A + I+L GNK D + R V E A+ +G + ETSA N+
Sbjct: 118 QLQMHAYS-ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAI 176
Query: 166 AELLNLEKNRNISLQLEK 183
LL+L R + ++K
Sbjct: 177 EMLLDLIMKR-MERSVDK 193
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 136 bits (345), Expect = 6e-41
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 13/180 (7%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
+ D+ +V++ G+ GVGK+SL+ RF TF E+ T+ + + V K I L
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RL 77
Query: 58 QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
QI DT G +F ++ + + ILVY T +++ ++L W ++ A+E
Sbjct: 78 QIWDTAGQERFNSITS-AYYRSAKGIILVYDITKKETFDDLPK-W--MKMIDKYASE--D 131
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
++LVGNK D +RE++ +GE A ++ G F E SAK N NV E+F +L++ +
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 137 bits (346), Expect = 6e-41
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICT 56
+S D ++++ G GVGKS L++RFV+ F S+I TI + + V K +
Sbjct: 12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-K 70
Query: 57 LQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA 115
LQ+ DT G +F + + +G ILVY T ++ ++ W + AN+
Sbjct: 71 LQLWDTAGQERFRTITT-AYYRGAMGIILVYDVTDERTFTNIKQ-W--FKTVNEHAND-- 124
Query: 116 SIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
++LVGNK D E R V+A +GEA AK G F+E+SAK + NV E+F L L + +
Sbjct: 125 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
Query: 176 NISLQLEKKG-------QLKGTRKLKEKCS 198
S +L G + K +
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNSSKSN 213
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 135 bits (342), Expect = 1e-40
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+V++ G GVGK+SL+ R+V + + Y TI + ++V + T+Q+ DT G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 66 HQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLV 122
+F ++ + +G +LVY T+ S E ++ W E N + P +++
Sbjct: 69 ERFQSLGV-AFYRGADCCVLVYDVTNASSFENIK-SWRDEF--LVHANVNSPETFPFVIL 124
Query: 123 GNKCD-ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLNLEKNRNIS 178
GNK D E + VS + AK G TSAK NV F E+ +N +
Sbjct: 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQA 182
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 134 bits (339), Expect = 3e-40
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 7 DY--RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTI--EDTYRQVISCNKNICTLQITD 61
D +V++ G GVGK+ L++RF G F ++I T+ + + + + LQ+ D
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV-KLQMWD 66
Query: 62 TTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
T G +F ++ + + HA +L+Y T++ S + ++ W + E A + +M
Sbjct: 67 TAGQERFRSVTH-AYYRDAHALLLLYDVTNKASFDNIQA-W--LTEIHEYAQH--DVALM 120
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
L+GNK D R V +GE AK +G FMETSAKT NV F + K R
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 134 bits (340), Expect = 5e-40
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTL 57
+ ++V+ G GG GK++ V R + G F + Y+ T+ + + V N+
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
+ DT G +F ++ + I+++ TSR + + + P W R+ +I
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNW--HRDLVRVCE---NI 120
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
PI+L GNK D + + A+ + + + SAK+N+N ++ F L
Sbjct: 121 PIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 134 bits (339), Expect = 9e-40
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 1 MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-----------EDTYR 45
+P S DY +++ G GVGK++ + R+ F +I T+
Sbjct: 15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74
Query: 46 QVISCNKNICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVI 104
S LQ+ DT G +F ++ + + F+L++ TS+QS +R W +
Sbjct: 75 NGSSGKAFKVHLQLWDTAGQERFRSLTT-AFFRDAMGFLLMFDLTSQQSFLNVRN-W--M 130
Query: 105 RETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
+ + A + I+L+GNK D + REV+ + A +G + ETSA T NV++
Sbjct: 131 SQLQANAYC-ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189
Query: 165 FAELLNLEKNR 175
LL+L R
Sbjct: 190 VETLLDLIMKR 200
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 133 bits (336), Expect = 1e-39
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
+ + V+ G G VGK+SLV+ + + YIPT D + V+S + LQ+ DT
Sbjct: 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIML 121
G +F ++ L + F+L +S S S + + W E+ PI+L
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-------APIIL 129
Query: 122 VGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
VG + D E+ + V + A+ ++E SA T N+KE+F
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 133 bits (337), Expect = 2e-39
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 12/196 (6%)
Query: 2 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
D ++V+ G GVGKS+L+ RF K F TI E R + K I
Sbjct: 6 YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KA 64
Query: 58 QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
QI DT G ++ A+ + +G ++VY + S E W + E + A++ +
Sbjct: 65 QIWDTAGQERYRAITS-AYYRGAVGALIVYDISKSSSYENCNH-W--LSELRENADD--N 118
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
+ + L+GNK D R V E + A+ F ETSA + NV + F EL+N +
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178
Query: 177 ISLQLEKKGQLKGTRK 192
Q++
Sbjct: 179 SKHQMDLGDSSANGNA 194
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 131 bits (332), Expect = 3e-39
Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
M +S+ ++V++ G GGVGKSSL+ R+V F TI E + + + T+Q
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV-TMQ 59
Query: 59 ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELA 115
I DT G +F +++ +G +L +S QS + L W E E
Sbjct: 60 IWDTAGQERFRSLRT-PFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEF--IYYADVKEPE 115
Query: 116 SIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
S P +++GNK D R+VS E +A + G + ETSAK NV F E +
Sbjct: 116 SFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 129 bits (325), Expect = 4e-38
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 1 MPEQSNDYRV--VVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQ 58
M + VV G G VGK+ L++ + F E Y+PT+ D Y ++ L
Sbjct: 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG 69
Query: 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP 118
+ DT G + ++ LS F++ +S + S + ++ W + E K A ++P
Sbjct: 70 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYA---PNVP 124
Query: 119 IMLVGNKCDETENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF 165
+L+G + D ++ + + +G+ AK G C ++E SA T +K +F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Query: 166 AE 167
E
Sbjct: 185 DE 186
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 128 bits (324), Expect = 5e-38
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
V G G VGK+ L++ + TF Y+PT+ D + + N L + DT G +
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN 70
Query: 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD-- 127
++ LS FIL +S S+ S E + W I E K A +PI+LVG K D
Sbjct: 71 RLRPLSYRGADVFILAFSLISKASYENVSKKW--IPELKHYA---PGVPIVLVGTKLDLR 125
Query: 128 --------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
++ +GE K+ G ++E S+K+ NVK +F
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 128 bits (325), Expect = 7e-38
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
+V++ G GVGK+SL+ ++V F Y TI + ++V+ ++ + T+QI DT G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV-TMQIWDTAGQ 67
Query: 66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGAN--ELASIPIMLVG 123
+F ++ +LV+ T+ + + L W E A+ + + P +++G
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SW--RDEFLIQASPRDPENFPFVVLG 124
Query: 124 NKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVKELFAEL----LNLEKNRNIS 178
NK D ENR+V+ +A + ETSAK NV++ F + L E +
Sbjct: 125 NKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELY 183
Query: 179 LQLEKKGQLKGTRKLKEKCS 198
+ + +L + K
Sbjct: 184 NEFPEPIKLDKNERAKASAE 203
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 126 bits (319), Expect = 6e-37
Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 19/193 (9%)
Query: 3 EQSNDY--RVVVFGAGGVGKSSLVLRFVK--GTFRESYIPTI--EDTYRQVISCNKNICT 56
+ + +V V G VGKS+L+ F F + Y T E V + + +
Sbjct: 14 DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTV-S 72
Query: 57 LQI--TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANE 113
+++ DT GS + + + ILV+ +S +S E + W E+++ +
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARPDRER 131
Query: 114 LASIPIMLVGNKCD-ETENREVSAAEGEAEAKMWGCHFMETSAK-TNHNVKELF----AE 167
+ +LV NK D + +V + A F + SA + F
Sbjct: 132 --PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189
Query: 168 LLNLEKNRNISLQ 180
+++ + Q
Sbjct: 190 FYRNYEDKVAAFQ 202
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 126 bits (318), Expect = 8e-37
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 22/173 (12%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
+VV G G GK+ L++ F K F E Y+PT+ + Y I + L + DT G +
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87
Query: 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKCD 127
++ LS ++ +S S SLE + W EV +PI+LV NK D
Sbjct: 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-------VPIILVANKKD 140
Query: 128 ETENRE------------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
+ V +G A A + ++E SAKT V+E+F
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 126 bits (317), Expect = 1e-36
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
+ Q + VV G G VGK+ L++ + F YIPT+ D Y + + L +
Sbjct: 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 83
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DT G + ++ LS + F++ +S S S E +R W E + + PI+
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVRHHC---PNTPII 138
Query: 121 LVGNKCD------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
LVG K D E + ++ +G A AK G ++E SA T +K +F E
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 126 bits (317), Expect = 1e-36
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 46/205 (22%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI---------------------- 40
E+ + Y+ V+ G VGKSS+VLR K TF E+ TI
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 41 ----------------EDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84
+ N I DT G ++ ++ L I+
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK 144
V+ ++ +L+ + W + + K +N I+LV NK D+ +V E + A+
Sbjct: 123 VFDISNSNTLDRAKT-W--VNQLKISSN----YIIILVANKIDK-NKFQVDILEVQKYAQ 174
Query: 145 MWGCHFMETSAKTNHNVKELFAELL 169
F++TSAKT N+K +F L
Sbjct: 175 DNNLLFIQTSAKTGTNIKNIFYMLA 199
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 123 bits (310), Expect = 2e-35
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
VV+ G GG GK+SL++ F G F ESY PT+ + Y + L I DT G +
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD 96
Query: 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
++ L +L + TS S + + W E +PI++VG K D
Sbjct: 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRW--YPEVNHFC---KKVPIIVVGCKTDLR 151
Query: 130 ENRE------------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
+++ V+ G+ A+ G ++E SA+ + NV +F E
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 120 bits (303), Expect = 1e-34
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 1 MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICT 56
+P S+ ++V+ G G GK+ L++ F K F E Y+PT+ + Y I +
Sbjct: 15 VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVE 74
Query: 57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
L + DT G + ++ LS ++ +S S SLE + W E K +
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW--TPEVKHFC---PN 129
Query: 117 IPIMLVGNKCD------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKE 163
+PI+LVGNK D + + V + EG A ++E SAKT V+E
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189
Query: 164 LFAE 167
+F
Sbjct: 190 VFEM 193
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 118 bits (298), Expect = 5e-34
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F YIPT+ D Y + + L + DT G +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
++ LS + ++ +S S S E +R W E + + PI+LVG K D
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVRHHC---PNTPIILVGTKLDL 121
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAE 167
++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 116 bits (293), Expect = 3e-33
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT 62
Q+ ++VV G GK++L+ F K F E+Y+PT+ + Y + L + DT
Sbjct: 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDT 62
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
+GS + ++ LS A ++ + + ++L+ + W E + + ++LV
Sbjct: 63 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW--KGEIQEFC---PNTKMLLV 117
Query: 123 GNKCDETENRE------------VSAAEGEAEAKMWGCH-FMETSAKTNHN-VKELFAE 167
G K D + VS +G AK G ++E SA + N V+++F
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 116 bits (291), Expect = 9e-33
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
P Q+ ++VV G GK++L+ F K F E+Y+PT+ + Y + L + D
Sbjct: 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 82
Query: 62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
T+GS + ++ LS A ++ + + ++L+ + W E+ +
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-------TKM 135
Query: 120 MLVGNKCD------------ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHN-VKELF 165
+LVG K D VS +G AK G ++E SA + N V+++F
Sbjct: 136 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
Query: 166 AE 167
Sbjct: 196 HV 197
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 114 bits (288), Expect = 1e-32
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 9/166 (5%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
++V+ G VGKSS+VLRFV F E+ PTI Q ++ N++ +I DT G
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
+F ++ A ++VY T QS + R W ++E A++ I I LVGNK
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-W--VKELHEQASK--DIIIALVGNKI 118
Query: 127 DETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
D + R+V+ EGE A+ G F ETSAKT NV ++F +
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 114 bits (287), Expect = 8e-32
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 13/154 (8%)
Query: 26 RFVKGTFRESYIPTIEDTYRQ-----VISCNKNICTLQITDTTGSHQFPAMQRLSIS-KG 79
F+ + + T Y + ++ + + F Q
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163
Query: 80 HAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA 137
F+L + ++ ++ + PI++V KCDE R + A
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK----KPIVVVLTKCDEGVERYIRDA 219
Query: 138 EGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
A +K +ETSA++N NV F+ L+ L
Sbjct: 220 HTFALSK-KNLQVVETSARSNVNVDLAFSTLVQL 252
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 117 bits (294), Expect = 5e-31
Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 20/176 (11%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI---------EDTYRQVISCNKN 53
+ +V + G G GK+SL+ + + TF T +
Sbjct: 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96
Query: 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGAN 112
C D G A + +++ ++L+ + + W I + G +
Sbjct: 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHY----WLRHIEKYGGKS- 151
Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
P+++V NK DE + + + F S K V+ + L
Sbjct: 152 -----PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 108 bits (271), Expect = 8e-30
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
+V+ G GK++++ K + E+Y+PT+ + Y + + L + DT+GS +
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
++ L S A +L + + ++++ W E S ++L+G K D
Sbjct: 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKW--RTEILDYC---PSTRVLLIGCKTDLR 144
Query: 130 ENRE------------VSAAEGEAEAKMWGCH-FMETSAKTN-HNVKELFAE 167
+ +S +G A AK G ++E SA T+ ++ +F
Sbjct: 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 106 bits (266), Expect = 2e-29
Identities = 30/195 (15%), Positives = 75/195 (38%), Gaps = 25/195 (12%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTI--EDTYRQVISCNKNICT--LQI 59
N ++++ G G GK++L+ + +K + T+ + + +K L +
Sbjct: 1 NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
D G +F + +++ ++ VY + Q+ + W + K A+ P+
Sbjct: 61 WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPW--LFNIKARASS---SPV 115
Query: 120 MLVGNKCDETENRE---VSAAEGEAEAKMWG-----CHFMETSAKTNHNVKELFAELLNL 171
+LVG D ++ ++ + + G + + + + + +L ++
Sbjct: 116 ILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII-- 173
Query: 172 EKNRNISLQLEKKGQ 186
N SL + + Q
Sbjct: 174 ----NESLNFKIRDQ 184
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 95.8 bits (238), Expect = 5e-24
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
+ VV G G VGK+ L++ + F YIPT+ D Y + + L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 208
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
DT G + ++ LS + F++ +S S S +R W E + + + PI+
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPII 263
Query: 121 LVGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
LVG K D ++++ ++ +G A AK G ++E SA T +K +F E
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-09
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 42/189 (22%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVL----------RFVKGTFRESYIPTI--EDTYRQVISCN 51
+ V++ G G GK+ + L + F ++ + ++ V+
Sbjct: 148 RPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WL-NLKNCNSPETVLEML 202
Query: 52 KNICTLQIT---DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRE 106
+ + QI + H R+ + L+ S L L + +
Sbjct: 203 QKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 107 TKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHF-METSAK--TNHNVKE 163
I+L T ++V+ A H ++ + T VK
Sbjct: 262 FNLSC------KILLT------TRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVKS 305
Query: 164 LFAELLNLE 172
L + L+
Sbjct: 306 LLLKYLDCR 314
Score = 34.8 bits (79), Expect = 0.014
Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 57/194 (29%)
Query: 21 SSLVLRFVKGTFRESY---IPTIEDTYRQ-------VISCNKNICTLQITDTTGSHQFPA 70
+V +FV+ R +Y + I+ RQ I + + F
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-------DNQVFA- 127
Query: 71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG------ANE-LASIPI---- 119
+ ++S+ ++ + RQ+L ELRP V+ + G A + S +
Sbjct: 128 --KYNVSRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 120 ------MLVGNKCDETENREVSAAEGEAEAKMW------GCHFMETSAKTNHNVKELFAE 167
+ + N C+ E E K+ + S+ + + AE
Sbjct: 181 DFKIFWLNLKN-CNSPE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 168 LLNL--EKNRNISL 179
L L K L
Sbjct: 234 LRRLLKSKPYENCL 247
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 52.1 bits (125), Expect = 9e-09
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 17/178 (9%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESY-----------IPTI--EDTYRQVISCNKNI 54
+++V +G G GK++ L+++ E T+ + +
Sbjct: 15 FKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL 114
+ G + A ++L + + V + + + L
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 115 ASIPIMLVGNKCDETENREVSAAE-GEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
+PI++ NK D + + +E A V E E+ L
Sbjct: 134 DDVPIVIQVNKRD-LPDA-LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 48.7 bits (116), Expect = 3e-07
Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 22/178 (12%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
VV+ G VGKS+L+ SY T QI DT G
Sbjct: 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYF--RYQIIDTPG 223
Query: 65 SHQFPAMQRLSISK----GHA-------FILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
P +R I K +I S LEE ++E + E
Sbjct: 224 LLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG------E 277
Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
+P ++V NK D + + E + K G + ++ SA + + E++
Sbjct: 278 FKDLPFLVVINKIDVADEENIKRLEKFVKEK--GLNPIKISALKGTGIDLVKEEIIKT 333
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 46.5 bits (110), Expect = 1e-06
Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 27/189 (14%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--CNKNICTLQITDTTGSH 66
++++ G G GKSS+ + + + T S TL + D G
Sbjct: 5 KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63
Query: 67 QF-----PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
F + I V+ S + L+++ + +++ + I +
Sbjct: 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR---KYSPDAKIFV 120
Query: 122 VGNKCD---------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHN-------VKELF 165
+ +K D + + +E +E TS V L
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180
Query: 166 AELLNLEKN 174
+ N + N
Sbjct: 181 PNMSNHQSN 189
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 45.3 bits (107), Expect = 2e-06
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 28/185 (15%)
Query: 4 QSNDYRVVVFGAGGVGKSSLV-LRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQIT 60
Q + R+++ G GKSS+ + F K + E T Y+ IS + + QI
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN-KIYKDDISNSSFVN-FQIW 74
Query: 61 DTTGSHQF--PAMQRLSISKG-HAFILVYSCTSR--QSLEELRPIWEVIRETKGGANELA 115
D G F P I +G A I V ++L L +
Sbjct: 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK------VNP 128
Query: 116 SIPIMLVGNKCD-----------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
+ + +K D ++ + +A + F TS +H++ E
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIY-DHSIFEA 187
Query: 165 FAELL 169
F++++
Sbjct: 188 FSKVV 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 50/251 (19%), Positives = 70/251 (27%), Gaps = 101/251 (40%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNIC---TLQITDTTGSH 66
+ FG G GK RE+Y I +T + I T T
Sbjct: 1673 TIHFG-GEKGKR----------IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 67 --------QF--PAMQRLSISK-------------------GH------AFILVYSCTSR 91
QF PA+ + K GH A L S
Sbjct: 1722 EKGLLSATQFTQPAL--TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--LA-SLADV 1776
Query: 92 QSLEEL------R---PIWEVIRETKGGANE--LASIPIMLVGNKCDETEN---REVSAA 137
S+E L R V R+ G +N +A P + + E V
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 138 EGEAEAKMWGCHFMETSAKTNHNVK-------------ELFAELLNLEKNRNI------- 177
G +E N+NV+ + +LN K + I
Sbjct: 1837 TGW---------LVEI-V--NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
Query: 178 SLQLEK-KGQL 187
SL LE+ +G L
Sbjct: 1885 SLSLEEVEGHL 1895
Score = 35.8 bits (82), Expect = 0.007
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 10 VVVFGAGGV-GKSSLVLRFVKGT 31
++ FG GG G L R GT
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGT 523
Score = 31.6 bits (71), Expect = 0.17
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 25/110 (22%)
Query: 15 AGGVGKSSLVLRFVKGTFRESY------------IPTIEDT----YRQVISCNKNICTLQ 58
VG+ VL F Y + DT +++I +
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 59 ITDTTGSHQFPAMQRLSISKGHAFILVYSC-----TSRQSLEELRPIWEV 103
A+ R ++ +G+A + + + EELR +++
Sbjct: 134 KRPFDKKSN-SALFR-AVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQT 179
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 42.8 bits (101), Expect = 2e-05
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 93 SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-----WG 147
S + I E I + ++ I++ NK D+ +S ++
Sbjct: 119 SEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP 178
Query: 148 CHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTR 191
F S T V++ L KN L + QL T+
Sbjct: 179 IKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQEQLLNTK 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 41.6 bits (97), Expect = 7e-05
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 4 QSNDYRVVVFGAGGVGKSSLV--LRFVKGTFRESYIPTIEDTYRQVIS-CNKNICTLQIT 60
S+ V V G G GKSS + LR + + + + + + NI +
Sbjct: 66 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125
Query: 61 DT--TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP 118
D GS FP L K + + ++ + + I + I K
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK--------KE 177
Query: 119 IMLVGNKCDETENRE 133
V K D E
Sbjct: 178 FYFVRTKVDSDITNE 192
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 40.8 bits (96), Expect = 1e-04
Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 41/189 (21%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFV----------KGTFRESYIPTIE-DTYRQVIS 49
+P+ +VV G VGKSS + V GT + ++E V
Sbjct: 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVT- 86
Query: 50 CNKNICTLQITDTTGSHQFPAMQRL-------SISKGHAFILVYSCTSRQSLEELRPIWE 102
+ DT G + RL + ILV + E +
Sbjct: 87 ---------LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA--PTPYEDD-VVN 134
Query: 103 VIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162
+ +E + IP ++V NK D + + + SA
Sbjct: 135 LFKEME--------IPFVVVVNKIDVLGEKAEELK--GLYESRYEAKVLLVSALQKKGFD 184
Query: 163 ELFAELLNL 171
++ + +
Sbjct: 185 DIGKTISEI 193
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 39.9 bits (94), Expect = 2e-04
Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+ + + G GK++ V G F E IPT+ R++ N+ T+++ D G
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK--GNV-TIKLWDIGGQP 78
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
+F +M A + + ++ +E + + ++ + +L IP++++GNK
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK-----PQLQGIPVLVLGNK 133
Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D +E+ + + S K N+ L+ K+R
Sbjct: 134 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 39.8 bits (94), Expect = 3e-04
Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 38/181 (20%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNIC--TLQITDTTG- 64
V+ G GKS+L+ + +E I + + T R I ++TDT G
Sbjct: 235 STVIAGKPNAGKSTLLNTLLG---QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
Query: 65 --------------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110
S +++ + + + + +EL I E+
Sbjct: 292 REAGEEIEHEGIRRSRM-------KMAEADLILYLLDLGTERLDDELTEIRELKAAHPA- 343
Query: 111 ANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
+ V NK D N + A A A G + SA + L + +
Sbjct: 344 ------AKFLTVANKLDRAANAD---ALIRAIADGTGTEVIGISALNGDGIDTLKQHMGD 394
Query: 171 L 171
L
Sbjct: 395 L 395
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.8 bits (91), Expect = 4e-04
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 13/173 (7%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
R+++ G GK++++ + G + IPTI V KNI + D G
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--KNI-CFTVWDVGGQD 84
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
+ + R I V R+ ++E + ++++E +EL +++ NK
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE-----DELRDAVLLVFANK 139
Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D E++ G + + T A + + L + R
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 38.8 bits (91), Expect = 4e-04
Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+ R+++ G G GK++++ R G + PTI + KN+ L + D G
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY--KNL-KLNVWDLGGQT 73
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
R + A I V T + + + +++E EL +++ NK
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE-----EELQDAALLVFANK 128
Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
D+ EVS E K + +SA + E L+++ K +
Sbjct: 129 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL 183
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 38.9 bits (90), Expect = 5e-04
Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 24/177 (13%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF- 68
V++ G GKSS+ + V + +E T + + L + + G +
Sbjct: 2 VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYF 60
Query: 69 -PAMQRLSISKG-HAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
P+ + K A + V ++ L I E + SI I ++ +
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYK------VNPSINIEVLIH 114
Query: 125 KCD-----------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
K D + E F TS +H++ E F+ ++
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF-DHSIYEAFSRIVQ 170
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 38.4 bits (90), Expect = 5e-04
Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 13/173 (7%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+++V++ G GK++++ +F + PTI +++ N + D G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI--NNTR-FLMWDIGGQE 71
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
+ + I+V T R+ + R +++++ +L +++ NK
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGLLIFANK 126
Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D E E+S K H A T + + +++ K R
Sbjct: 127 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 37.9 bits (89), Expect = 6e-04
Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 41/181 (22%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNIC--TLQITDTTG- 64
+VV+ G GKSSL+ RE+ I T I T R V+ + +I L I DT G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAG---REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
Query: 65 --------------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110
+ Q I + + + + + IW
Sbjct: 63 REASDEVERIGIERAWQ-------EIEQADRVLFMVD-GTTTDAVDPAEIWPEFI----- 109
Query: 111 ANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
A A +PI +V NK D T E +++ G + SA+T V L L
Sbjct: 110 ARLPAKLPITVVRNKADIT-------GETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 162
Query: 171 L 171
Sbjct: 163 S 163
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 37.9 bits (89), Expect = 6e-04
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 13/173 (7%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+ R+++ G G GK++++ R G + IPTI V KN+ Q+ D G
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY--KNL-KFQVWDLGGLT 62
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
R S A I V R + + + ++ E EL +++ NK
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-----EELRKAILVVFANK 117
Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D + + E++ + G K +TSA + E L+ K+R
Sbjct: 118 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 38.0 bits (89), Expect = 7e-04
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 25/182 (13%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
RV++ G GK+S++ R G + +PT+ + KNI + ++ D G
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNLETLQY--KNI-SFEVWDLGGQT 77
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
R S A I V T R + + ++ ++ E +EL +++ NK
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE-----DELRKSLLLIFANK 132
Query: 126 CDETENREVSAAEGEAE-AKMWG--------CHFMETSAKTNHNVKELFAELLNLEKNRN 176
D + A EAE A+ G +++S+KT + E L+ + +
Sbjct: 133 QD------LPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186
Query: 177 IS 178
+
Sbjct: 187 LG 188
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 37.2 bits (87), Expect = 0.001
Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 15/174 (8%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+ R+++ G GK++++ +F PT+ + + + L I D G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH--RGF-KLNIWDVGGQK 73
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
+ R I V RQ +++ + + ++ E LA +++ NK
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-----ERLAGATLLIFANK 128
Query: 126 CDETEN----REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
D + A + SA T ++ LL+ +R
Sbjct: 129 QD-LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 36.8 bits (86), Expect = 0.001
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 25/177 (14%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
R+++ G GK++++ + G + IPTI V KNI + + D G +
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--KNI-SFTVWDVGGQDKI 57
Query: 69 PAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCD 127
+ R I V R+ + E R + ++ E +EL +++ NK D
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-----DELRDAVLLVFANKQD 112
Query: 128 ETENREVSAAEGEAE-AKMWG--------CHFMETSAKTNHNVKELFAELLNLEKNR 175
+ A AE G + T A + + E L N +N+
Sbjct: 113 ------LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.0 bits (86), Expect = 0.002
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
+S+ V+ G GK+ L +R + G +R++ +I D+ N +L + D
Sbjct: 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLP 62
Query: 64 GSHQF-PAMQRLSISKGHAFILVYSCTSRQSL-----EELRPIWEVIRETKGGANELASI 117
G + S A + V + Q E L ++V+ ++ N S
Sbjct: 63 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFL---YQVLIDSMALKN---SP 116
Query: 118 PIMLVGNKCD 127
+++ NK D
Sbjct: 117 SLLIACNKQD 126
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 36.8 bits (86), Expect = 0.003
Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 43/182 (23%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNIC--TLQITDTTG- 64
R+V+ G VGKS+L+ R + + I T I T R VIS I +I DT G
Sbjct: 245 RMVIVGKPNVGKSTLLNRLLN---EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV 301
Query: 65 ---------------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKG 109
+ Q I K + V S EE R I E
Sbjct: 302 RSETNDLVERLGIERTLQ-------EIEKADIVLFVLD-ASSPLDEEDRKILE------- 346
Query: 110 GANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
+ + ++V NK D E + + H ++ SA +++L +
Sbjct: 347 ---RIKNKRYLVVINKVDVVEKINEEEIKNKLGT---DRHMVKISALKGEGLEKLEESIY 400
Query: 170 NL 171
Sbjct: 401 RE 402
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 36.6 bits (84), Expect = 0.003
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 18/145 (12%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYRQVISCNKNICTLQITD 61
+ + R+++ G G GKS+ + F T S + C +++ D
Sbjct: 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVD 76
Query: 62 TTGSHQFPAMQR------------LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKG 109
T + LS HA +LV + + + +R+ G
Sbjct: 77 TPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFG 134
Query: 110 GANELASIPIMLVGNKCDETENREV 134
E +++V + ++ +
Sbjct: 135 ---EDVLKWMVIVFTRKEDLAGGSL 156
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 36.3 bits (85), Expect = 0.004
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 90 SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH 149
+ + I+E ++ P++LV NK D E + +++ E
Sbjct: 314 ATGWTTGDQEIYE----------QVKHRPLILVMNKIDLVEKQLITSLEYPEN----ITQ 359
Query: 150 FMETSAKTNHNVKELFAELLNL 171
+ T+A + L +L +
Sbjct: 360 IVHTAAAQKQGIDSLETAILEI 381
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 36.0 bits (84), Expect = 0.005
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN-L 171
L P ++V NK D E E E E SA T ++EL E+ N L
Sbjct: 271 RLTERPQIIVANKMDMPEAAEN--LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328
Query: 172 EKNRNISLQLEKK 184
E L E++
Sbjct: 329 ENTPEFPLYDEEE 341
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 35.6 bits (83), Expect = 0.006
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAEL 168
E + ++V NK D E E + G ++ SAKT + EL L
Sbjct: 107 EYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL 163
Score = 26.0 bits (58), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 9 RVVVFGAG--GVGKSSLV 24
+ + AG GVGKSS++
Sbjct: 166 FICIL-AGPSGVGKSSIL 182
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 34.9 bits (81), Expect = 0.008
Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 25/179 (13%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+ R+++ G GK++L+ + PT + V S + L + D G
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS--QGFK-LNVWDIGGQR 71
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
+ R I V R+ EE + E++ E +L+ +P+++ NK
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE-----EKLSCVPVLIFANK 126
Query: 126 CDETENREVSAAEGEAE-AKMWG--------CHFMETSAKTNHNVKELFAELLNLEKNR 175
D + A +E A+ SA T V++ + +
Sbjct: 127 QD------LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 34.9 bits (81), Expect = 0.008
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 13/167 (7%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
+P S +++V++ G GK++++ +F + PTI +++ N +
Sbjct: 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI--NNTR-FLMW 70
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPI 119
D G + + I+V T R+ + R +++++ +L +
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGL 125
Query: 120 MLVGNKCDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163
++ NK D E E+S K H A T + +
Sbjct: 126 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 35.3 bits (81), Expect = 0.008
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 118 PIMLVGNKCD----ETENREVSA--AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
++LVGNK D ++ +V + + SA + EL +
Sbjct: 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157
Query: 172 EKNRNI 177
+++
Sbjct: 158 RGGKDV 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 35.2 bits (82), Expect = 0.009
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 113 ELASIPIMLVGNKCD--ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
E I ++ K D E ++ E + + + G TS+K ++ ++
Sbjct: 114 EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF 171
Score = 26.0 bits (58), Expect = 8.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 9 RVVVFGAG--GVGKSSLV 24
+ VF AG GVGKSSL+
Sbjct: 174 KTTVF-AGQSGVGKSSLL 190
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 34.6 bits (79), Expect = 0.012
Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 24/189 (12%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFV-KGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
+++ R+V+ G G GKS+ + + F + S + L +
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83
Query: 61 DTTG-----------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKG 109
DT G S + L+ HA +LV R + EE E I + G
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG-RYTEEE-HKATEKILKMFG 141
Query: 110 GANELASIPIMLVGNKCDETENREVSAAEGEAE-------AKMWGCHFMETSAKTNHNVK 162
E A ++L+ + D+ + + EA + + T +
Sbjct: 142 ---ERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQE 198
Query: 163 ELFAELLNL 171
A+LL L
Sbjct: 199 AQRAQLLGL 207
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 34.6 bits (79), Expect = 0.014
Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 17/144 (11%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYRQVISCNKNICTLQITD 61
++ R+++ G G GKS+ ++ F + + I D
Sbjct: 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIID 77
Query: 62 TTG-----------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110
T + LS H +LV R + ++ + + ++E G
Sbjct: 78 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQD-QQAAQRVKEIFG- 134
Query: 111 ANELASIPIMLVGNKCDETENREV 134
E A +++ ++ +
Sbjct: 135 --EDAMGHTIVLFTHKEDLNGGSL 156
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 34.4 bits (80), Expect = 0.017
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
L P ++ NK D E V A + G + SA T + L L L
Sbjct: 266 ALLRRPSLVALNKVDLLEEEAVKALADALARE--GLAVLPVSALTGAGLPALKEALHAL 322
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.0 bits (79), Expect = 0.019
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
E + ++V NK D + ++ E ++TSAKT ++EL L
Sbjct: 112 EKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167
Score = 26.0 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 9 RVVVFGAG--GVGKSSLV 24
++ AG GVGKSSL+
Sbjct: 170 KISTM-AGLSGVGKSSLL 186
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 33.6 bits (78), Expect = 0.027
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME---TSAKTNHNVKELFAELLNL 171
+ P+++V NK D+ + + K E SA N+ EL +L
Sbjct: 121 LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP-ELTEIVPISALKGANLDELVKTILKY 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 33.4 bits (76), Expect = 0.029
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 24/148 (16%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLV------LRFVKGTFRESYIPTIEDTYRQVISCNKNICT 56
E N ++V G GGVGKSS V F+ ++S ++ T
Sbjct: 35 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ----SEGPRP--VMVSRSRAGFT 88
Query: 57 LQITDTTG---SHQFPAM------QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
L I DT G M L + V + + + + + I ++
Sbjct: 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDS 148
Query: 108 KGGANELASIPIMLVGNKCDETENREVS 135
G + ++ + +
Sbjct: 149 FG---KGIWNKAIVALTHAQFSPPDGLP 173
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 33.2 bits (76), Expect = 0.031
Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+++ G GK+SL+ + R + + + E + + + + + + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE----PLSAADYDGSGVTLVDFPGHVKL 104
Query: 69 PAMQR--LSISKGHAFILVY---SCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLV 122
L L++ S + L + +++ T+ ++ I I++
Sbjct: 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE--SSCENGIDILIA 162
Query: 123 GNKCD 127
NK +
Sbjct: 163 CNKSE 167
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 33.0 bits (76), Expect = 0.034
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 115 ASIPIMLVGNKCDETENREVSA---AEGEAEA-KMWGCHFMETSAKTNHNVKELFAELLN 170
IP ++ NK D+ +N + AE F+ SAK N++ L +
Sbjct: 121 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 180
Query: 171 L---EKNRNI 177
+ + R +
Sbjct: 181 VIRERQGRRV 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 32.8 bits (76), Expect = 0.046
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET---SAKTNHNVKELFAELLNL 171
P++L NK D + + + A +F++ SA+T NV + A +
Sbjct: 115 GKAPVILAVNKVDNVQEKADLLPHLQFLASQM--NFLDIVPISAETGLNVDTIAAIVRKH 172
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 32.1 bits (74), Expect = 0.053
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKN 174
++L NK D ++ + + + K+ G + SA ++EL + K+
Sbjct: 109 ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 165
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.5 bits (74), Expect = 0.068
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 22/148 (14%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLV---LRFVKGTFRESYIPTIEDTYRQVISCNKNI--CT 56
+ N V+V G GGVGKSS V + + R S + + ++ + T
Sbjct: 31 QKDMNSMTVLVLGKGGVGKSSTVNSLIG--EQVVRVSPFQA---EGLRPVMVSRTMGGFT 85
Query: 57 LQITDT-----TGSHQFPAMQR----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
+ I DT G A++ L + V E + + I +T
Sbjct: 86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQT 145
Query: 108 KGGANELASIPIMLVGNKCDETENREVS 135
G + +LV + E+S
Sbjct: 146 FG---KEIWCKTLLVLTHAQFSPPDELS 170
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 31.8 bits (73), Expect = 0.088
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
++L NK D ++ + + + K+ G + SA ++EL + K++
Sbjct: 113 ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.2 bits (73), Expect = 0.099
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 118 PIMLVGNKCD----ETENREVSA--AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
PI+LVGNK D + ++ E + SA + ++ +
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159
Query: 172 EKNRNI 177
+ ++
Sbjct: 160 REGGDV 165
Score = 26.1 bits (57), Expect = 8.1
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI 40
+ V V G VGKS+ + R ++ + + T
Sbjct: 156 INRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT 195
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.9 bits (73), Expect = 0.11
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAEL 168
E + ++V NK D ++ + + + + G + S+ T +K L L
Sbjct: 157 ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL 213
Score = 26.5 bits (59), Expect = 7.2
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 9 RVVVFGAG--GVGKSSLV 24
R+ +F AG GVGKSSL+
Sbjct: 216 RISIF-AGQSGVGKSSLL 232
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 31.5 bits (72), Expect = 0.13
Identities = 30/182 (16%), Positives = 69/182 (37%), Gaps = 15/182 (8%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQI 59
+P S + V+ G GK++++ + + ++ +PTI + + S ++ +
Sbjct: 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS--SSLS-FTV 71
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELA--S 116
D +G ++ + +G A I V + R + + + ++ ++
Sbjct: 72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH-----PDIKHRR 126
Query: 117 IPIMLVGNKCDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
IPI+ NK D + + +VS K H + A ++E L + +
Sbjct: 127 IPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186
Query: 174 NR 175
Sbjct: 187 TV 188
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 32.1 bits (73), Expect = 0.13
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 10 VVVFGAGGVGKSSLVLRFVK 29
V ++G G GKS L V+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVR 169
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 31.1 bits (71), Expect = 0.14
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 25/173 (14%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
++V G GK++L+ + +PT+ T ++ + T D G
Sbjct: 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTI--AGM-TFTTFDLGGHI 80
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
Q + + + + + + C + L E + + ++ + +A++PI+++GNK
Sbjct: 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD-----ETIANVPILILGNK 135
Query: 126 CD------ETENREVSAAEGEAEAKMWG---------CHFMETSAKTNHNVKE 163
D E RE+ G+ K S E
Sbjct: 136 IDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 31.1 bits (71), Expect = 0.16
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
++L DE + + + K G + TS+ T ++EL +++ +
Sbjct: 111 KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKN 168
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 31.1 bits (71), Expect = 0.17
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
P+++ N D E+R +S + E + GC + A N + L LL+ +
Sbjct: 111 KPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHCSQKIK 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.5 bits (72), Expect = 0.17
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW 146
+ + +E L+ +E++RE G + PI++ NK D+ + +
Sbjct: 268 TFSENLLIETLQSSFEILREI--GVSG---KPILVTLNKIDKINGDLYKKLDLVEKLSKE 322
Query: 147 GCHFMET----SAKTNHNVKELFAEL 168
+ SA N++ L ++
Sbjct: 323 LYSPIFDVIPISALKRTNLELLRDKI 348
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 31.1 bits (71), Expect = 0.18
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
IP+ + N D + + + + G + TSA V ++ + + +
Sbjct: 108 IPVTIALNMIDVLDGQGKKI-NVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTST 165
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 31.3 bits (71), Expect = 0.18
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK 29
+P+ RV + G GVGKS+ +
Sbjct: 49 LPQTGRAIRVGITGVPGVGKSTTIDALGS 77
Score = 28.2 bits (63), Expect = 1.8
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 108 KGGANELASIPIMLVGNKCDETEN--------REVSAA--EGEAEAKMWGCHFMETSAKT 157
K G ELA + + NK D+ + E AA + W + S
Sbjct: 188 KKGIFELADM---IAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLH 244
Query: 158 NHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRK 192
+ L++ + + +L G++ G R+
Sbjct: 245 GKGLDSLWSRIEDHRS------KLTATGEIAGKRR 273
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 30.6 bits (70), Expect = 0.19
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLN- 170
+IP +V K D+ + E + E + TS+ T + EL +
Sbjct: 132 LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191
Query: 171 LEKN 174
L++N
Sbjct: 192 LKEN 195
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 30.5 bits (70), Expect = 0.29
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 98 RPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET---S 154
+ ++ G +PI+LVGNK D + E + E S
Sbjct: 105 ELVARALKPLVGK------VPILLVGNKLDAAKYPEEAMKAYHELLP-----EAEPRMLS 153
Query: 155 AKTNHNVKELFAELLNL 171
A V EL A+LL L
Sbjct: 154 ALDERQVAELKADLLAL 170
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 30.2 bits (69), Expect = 0.30
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNL 171
IP++++ K D+ + + + S++T E + + +
Sbjct: 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 30.6 bits (70), Expect = 0.33
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 115 ASIPIMLVGNKCD-ETEN-----REVSAAEGEAEAKMWG--CHFMETSAKTNHNVKELF- 165
A +PI+L NKCD + +E+ A + E +G + SA T N+ L
Sbjct: 103 AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCED--YGGDVQAVHVSALTGENMMALAE 160
Query: 166 -----AELLNLEKNRN 176
AE+L L+ +
Sbjct: 161 ATIALAEMLELKADPT 176
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 30.1 bits (68), Expect = 0.35
Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
+++ G GK+SL+ + R + + + E + + + + + + D G +
Sbjct: 14 SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE----PLSAADYDGSGVTLVDFPGHVKL 68
Query: 69 PAMQR--LSISKGHAFILVY---SCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLV 122
L L++ S + L + +++ T+ ++ I I++
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE--SSCENGIDILIA 126
Query: 123 GNKCD 127
NK +
Sbjct: 127 CNKSE 131
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 30.4 bits (69), Expect = 0.35
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
IP ++ N D E + + E +A + GC + + ++ L + + N N
Sbjct: 113 IPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANEN 171
Query: 177 I 177
+
Sbjct: 172 V 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 30.6 bits (70), Expect = 0.36
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 115 ASIPIMLVGNKCD-ETEN-----REVSAAEGEAEAKMWG--CHFMETSAKTNHNVKELF- 165
A +P+++ NK D + E+S E WG F+ SAK + EL
Sbjct: 102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEE--WGGESQFVHVSAKAGTGIDELLD 159
Query: 166 -----AELLNLEKNRN 176
AE+L L+ R
Sbjct: 160 AILLQAEVLELKAVRK 175
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 30.5 bits (68), Expect = 0.37
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLV----LRFVKGTF---RESYIPTI-EDTYRQVISCNK 52
M + ++++ GAG GKS++ L F G +SY+P I + Y+ + +
Sbjct: 3 MGSGIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHD 62
Query: 53 NICTLQITDTTGSHQFPAMQRLSISK---GHAFILVYSCTSRQSLEELRPIWE 102
+T + + + ++I + L Y ++ E + +W+
Sbjct: 63 GTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWK 115
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.2 bits (68), Expect = 0.38
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 104 IRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM---------WGCHFMETS 154
++ K G E+A + + K D + E + + W + S
Sbjct: 203 LQGIKRGIIEMADL---VAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259
Query: 155 AKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRK 192
A++ + E++ ++ + + + G+L R+
Sbjct: 260 ARSGEGISEMWDKMKDFQD------LMLASGELTAKRR 291
Score = 26.4 bits (58), Expect = 7.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVK 29
+ +RV + G G GKS+ + F K
Sbjct: 69 KGKPLAFRVGLSGPPGAGKSTFIEYFGK 96
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 30.0 bits (68), Expect = 0.39
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 117 IPIMLVG-NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
+ +++ NK D + + + + K G + T+AK V+EL + + + +
Sbjct: 109 VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK 167
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 30.3 bits (68), Expect = 0.43
Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 3 EQSNDYRVVVF-GAGGVGKSSL 23
E+ + + ++F G GGVGK+++
Sbjct: 21 EKKDGTKYIMFGGKGGVGKTTM 42
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.1 bits (67), Expect = 0.46
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 7 DYRVVVFGAGGVGKSSLV--------LRFVKGTFRESYIPTIE-DTYRQVISCNKNICTL 57
++ ++V G G+GKS+L+ T++ + + +I L
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 58 QITDTTGSH 66
I DT G
Sbjct: 68 TIVDTPGFG 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.1 bits (67), Expect = 0.52
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 10 VVVFGAGGVGKSSLVLRFVKG------TFRESYIPTIEDTYRQVIS 49
++ G VGKSSL+ F+ RE Y T ++I
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIK 79
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 29.8 bits (67), Expect = 0.61
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK 29
MP N R+ V G G GKS+ + F
Sbjct: 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78
Score = 29.0 bits (65), Expect = 1.1
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 108 KGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM---------WGCHFMETSAKTN 158
K G E+A + +V NK D + V+ A E+ + W + SA
Sbjct: 189 KKGLMEVADL---IVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEK 245
Query: 159 HNVKELFAELLNLEKNRNISLQLEKKGQLKGTRK 192
+ E++ +++ + L G+L+ R+
Sbjct: 246 RGIDEIWHAIIDFKT------ALTASGRLQQVRQ 273
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.4 bits (66), Expect = 0.68
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK 29
+P+ N +RV + G GVGKS+ +
Sbjct: 73 LPDSGNAHRVGITGVPGVGKSTAIEALGM 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 29.1 bits (66), Expect = 0.73
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 24/170 (14%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
+++ G GK++L+ PT T ++ NI D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTSEELAI--GNI-KFTTFDLGGHI 78
Query: 67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
Q + + + + + + + +E R + + EL +P +++GNK
Sbjct: 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI-----AELKDVPFVILGNK 133
Query: 126 CD------ETENRE------VSAAEGEAEAKMWGCHFMETSAKTNHNVKE 163
D E E R + ++ + S + E
Sbjct: 134 IDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV--EVFMCSVVMRNGYLE 181
>3igf_A ALL4481 protein; two-domained protein consisting of the
N-terminal alpha-beta the C-terminal all beta domain.,
structural genomics; 2.00A {Nostoc SP}
Length = 374
Score = 29.5 bits (66), Expect = 0.78
Identities = 4/16 (25%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 9 RVVVF-GAGGVGKSSL 23
++ F G GV ++ +
Sbjct: 3 LILTFLGKSGVARTKI 18
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 29.1 bits (65), Expect = 1.1
Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 9 RVVVF-GAGGVGKSSL 23
V G GGVGK+++
Sbjct: 15 TFVFIGGKGGVGKTTI 30
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.9 bits (64), Expect = 1.1
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 10 VVVFGAGGVGKSSLVL 25
+ GG GKS L L
Sbjct: 33 GALVSPGGAGKSMLAL 48
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA
ATPase, ATP binding site, hydro; HET: ADP; 2.15A
{Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB:
1f48_A* 1ii0_A* 1ii9_A*
Length = 589
Score = 28.7 bits (64), Expect = 1.3
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 9 RVVVF-GAGGVGKSSL 23
+ F G GGVGK+S+
Sbjct: 9 PYLFFTGKGGVGKTSI 24
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 28.4 bits (64), Expect = 1.4
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT 157
P+++ NK D + ++ E E + G + TSA
Sbjct: 216 PMVIAANKADAASDEQIKRLVREEEKR--GYIVIPTSAAA 253
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 28.0 bits (63), Expect = 1.8
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 5 SNDYRVVVF--GAGGVGKSSL 23
SN RV F GG G S +
Sbjct: 1 SNAKRVFGFVSAKGGDGGSCI 21
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP;
1.80A {Debaryomyces hansenii}
Length = 348
Score = 27.9 bits (62), Expect = 2.0
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 6 NDYRVVVF-GAGGVGKSSL 23
+ + + G GGVGK++
Sbjct: 16 DSLKWIFVGGKGGVGKTTT 34
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 27.9 bits (62), Expect = 2.2
Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 26/192 (13%)
Query: 5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-----EDTYRQVISCNKNICTLQI 59
+ + R+++ G GK++++ + G + IPT+ TY KN+ +
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY-------KNVK-FNV 370
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIP 118
D G + + R + I V C R ++E R + +I + E+
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-----REMRDAI 425
Query: 119 IMLVGNKCDETEN----REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKN 174
I++ NK D + E+ G + + + A + + E L + K+
Sbjct: 426 ILIFANKQD-LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484
Query: 175 RNISLQLEKKGQ 186
+ ++ LE
Sbjct: 485 K-LAAALEHHHH 495
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 27.9 bits (62), Expect = 2.2
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 6 NDYRVVVF-GAGGVGKSSL 23
++ + G GGVGK++
Sbjct: 16 TTHKWIFVGGKGGVGKTTS 34
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 28.1 bits (62), Expect = 2.4
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDT 62
R V+ G G VG++ + L F K + S + I + + ++ + T
Sbjct: 15 RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQIT 69
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 27.9 bits (63), Expect = 2.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 10 VVVFGAGGVG 19
V +GAG VG
Sbjct: 194 FVTWGAGAVG 203
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 27.8 bits (61), Expect = 2.7
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 5/98 (5%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE---DTYRQVISCN--KNICTLQITDTT 63
R+ + G G+GKS+ S +R + + I Q
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQ 68
Query: 64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW 101
G+ ++ F Y +
Sbjct: 69 GNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNS 106
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 27.8 bits (62), Expect = 2.7
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 6 NDYRVVVF-GAGGVGKSSL 23
+ + G GGVGK++
Sbjct: 17 TSLKWIFVGGKGGVGKTTT 35
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 27.6 bits (62), Expect = 2.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSL 23
PE Y ++ G GG G ++
Sbjct: 16 PEPKKSYDAIIVGGGGHGLATA 37
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 26.7 bits (59), Expect = 3.1
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 8 YRVVVFGAGGVGK 20
+ + V GAG +G+
Sbjct: 6 WNICVVGAGKIGQ 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGT 31
R+ +F GVGKS+L+ G
Sbjct: 73 RIGIFAGSGVGKSTLLGMICNGA 95
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 27.4 bits (60), Expect = 3.7
Identities = 16/123 (13%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 3 EQSNDYRVVVFGAGGVGKSSLVLRFV---KGTF----RESYIPTI-EDTYRQVISCNKNI 54
+ + + ++++ GAG GKS++V + + + + Y + +T + +I+ + +
Sbjct: 28 KAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAM 87
Query: 55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWE--VIRETKGGAN 112
L+I + A Q ++ + + ++ +W+ ++ +
Sbjct: 88 GRLKIDFGDAARADDARQLFVLAGAA----EEGFMTAELAGVIKRLWKDSGVQACFNRSR 143
Query: 113 ELA 115
E
Sbjct: 144 EYQ 146
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 27.2 bits (61), Expect = 3.7
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 150 FMETSAKTNHNVKELFAELLNL-EKNRNISLQLEKKGQLKGT 190
+ SA T + EL L+ L ++ L++E+ +GT
Sbjct: 194 IIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGT 235
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 27.2 bits (61), Expect = 4.4
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 10 VVVFGAGGVG 19
VV G GG+G
Sbjct: 175 AVVIGVGGLG 184
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 27.1 bits (59), Expect = 4.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 148 CHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
HF+ +TN + +E+ ++ L++ + L+ +K+G
Sbjct: 355 THFVGDGFRTNLSFEEVMKKMEELKEKQKEFLEKKKQG 392
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 26.8 bits (59), Expect = 4.6
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 6 NDYRVVVF-GAGGVGKSSL 23
R + G GGVGK++
Sbjct: 14 RSLRWIFVGGKGGVGKTTT 32
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.0 bits (59), Expect = 4.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVK 29
VV G G GK++L F +
Sbjct: 15 MIVVFVGTAGSGKTTLTGEFGR 36
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V*
1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V*
1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V*
1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Length = 71
Score = 25.3 bits (56), Expect = 4.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 160 NVKELFAELLNLEKNRNISLQLEKKGQLKGTRK 192
+ +L ELLN + E G++K RK
Sbjct: 20 ELDDLKTELLNARAVQAAGGAPENPGRIKELRK 52
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.0 bits (59), Expect = 4.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 10 VVVFGAGGVGKSSLVLRFVKG 30
+V G GKSS++ +
Sbjct: 33 TLVLGLRRTGKSSIIKIGINE 53
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 26.8 bits (60), Expect = 5.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 1 MPEQSNDYRVVVFGAGGVG 19
+ Y VV G G +G
Sbjct: 11 IRAMKRHYEAVVIGGGIIG 29
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 26.8 bits (60), Expect = 5.3
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 10 VVVFGAGGVG 19
VV+ GAG +G
Sbjct: 199 VVIQGAGPLG 208
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 26.9 bits (60), Expect = 5.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGT 31
R+ +F GVGKS L+ + T
Sbjct: 159 RMGLFAGSGVGKSVLLGMMARYT 181
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 26.4 bits (59), Expect = 6.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 9 RVVVFGAGGVGKS 21
VV GAGGVG +
Sbjct: 129 SVVQVGAGGVGNA 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.4 bits (58), Expect = 6.4
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 21/106 (19%)
Query: 80 HAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE 138
I V R+ + E R + ++ E +EL +++ NK D + A
Sbjct: 234 QGLIFVVDSNDRERVNEAREELMRMLAE-----DELRDAVLLVFANKQD------LPNAM 282
Query: 139 GEAE-AKMWG--------CHFMETSAKTNHNVKELFAELLNLEKNR 175
AE G + T A + + E L N +N+
Sbjct: 283 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 26.5 bits (59), Expect = 7.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 5 SNDYRVVVFGAGGVGKSSL 23
S + V+V GAG +G ++
Sbjct: 1 STHFDVIVVGAGSMGMAAG 19
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 26.5 bits (58), Expect = 7.1
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 10 VVVFGAGGVGKSSLV 24
+ + G G GKS +
Sbjct: 155 LFLHGRAGSGKSVIA 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 26.1 bits (58), Expect = 7.1
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKM----WGCHFMETSAKTNHNVKELFAELLN 170
++I ++++ K D+ + A + S+ V +L +L
Sbjct: 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195
Query: 171 L 171
Sbjct: 196 W 196
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 26.2 bits (57), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 10 VVVFGAGGVGKSSLVLRFVK 29
V++ G +GKS L L +
Sbjct: 19 VLITGEANIGKSELSLALID 38
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 25.3 bits (56), Expect = 7.4
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 41 EDTYRQVISCNKNICTLQITDTT 63
D R +C L+I
Sbjct: 48 PDQRRFAEEAEGGLCRLRILAAE 70
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 26.4 bits (59), Expect = 7.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 1 MPEQSNDYRVVVFGAGGVGKSSL 23
+PE+ +VV G G VG +
Sbjct: 2 LPEK---SEIVVIGGGIVGVTIA 21
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 26.1 bits (58), Expect = 8.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 10 VVVFGAGGVG 19
V + G GG+G
Sbjct: 190 VAIVGVGGLG 199
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 26.0 bits (58), Expect = 8.6
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 9 RVVVFGAGGVGKS 21
++ + GAGG +
Sbjct: 156 KMTICGAGGAATA 168
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.5 bits (57), Expect = 8.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 4 QSNDYRVVVFGAGGVGKSSLV 24
Q +R++V G GKS+ +
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFL 86
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 25.8 bits (56), Expect = 8.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 10 VVVFGAGGVGKSSLVLRFVK 29
V++ G GVGKS L V+
Sbjct: 37 VLITGDSGVGKSETALELVQ 56
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 26.0 bits (58), Expect = 9.5
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 9 RVVVFGAGGVGKS 21
+V+ GAGG +
Sbjct: 150 TMVLLGAGGAATA 162
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 26.0 bits (58), Expect = 9.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 10 VVVFGAGGVG 19
VFG GGVG
Sbjct: 195 CAVFGLGGVG 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,842,523
Number of extensions: 156232
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 226
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)