BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8702
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+SNL+ H THT KPY+C CGK F ++ DL++H TH G+ P
Sbjct: 17 SSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH-TGEKP 60
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+S+L+ H THT KPY+C CGK F R+ L RH TH
Sbjct: 45 SSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+C CGK F ++ +L++H TH G+ P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH-TGEKP 32
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESSLA 91
+S L THLL H+D +PY C CGK F + D+++H H G+ P + +
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHKCQVC 63
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHA 80
S++K H HT KP++C CGK F ++ +L H+ H
Sbjct: 43 SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 13 NVAKDSVNPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDL 72
+VA+ ++ PG Y K+ + +L H THT KPY+C CGK F DL
Sbjct: 9 SVAQAALEPGEKPYACPECGKSF---SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 73 RRHALTHAVGDVP 85
RH TH G+ P
Sbjct: 66 TRHQRTH-TGEKP 77
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+NL+ H THT KPY C CGK F + LR H TH G+ P
Sbjct: 91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-TGEKP 133
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KSF+ K LT H THT KPY+C CGK F + +LR H TH G+ P
Sbjct: 57 KSFSDKKDLTR--------HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKP 105
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
++L+ H THT KPY+C CGK F R +L H TH G+ P
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKP 161
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 21/37 (56%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
NL TH THT KPY+C CGK F R L H TH
Sbjct: 148 NLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+C+ CGKVFRRN L RH L H G+ P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH-TGEKP 40
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 17 DSVNPGLSLYT--KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLR 73
D + + ++T K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +
Sbjct: 19 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 78
Query: 74 RHALTH 79
RH H
Sbjct: 79 RHTKIH 84
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ L H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 18 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 61
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 17 DSVNPGLSLYT--KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLR 73
D + + ++T K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 74 RHALTH 79
RH H
Sbjct: 80 RHTKIH 85
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ L H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 62
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 17 DSVNPGLSLYT--KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLR 73
D + + ++T K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 74 RHALTH 79
RH H
Sbjct: 80 RHTKIH 85
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ L H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 62
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHA 80
NL H THTD +PY C+ C K FRR LR H H+
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESS 89
+L+ H H+ KP++C CGK F ++ L H H P +S
Sbjct: 60 HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +RH H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ +L H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 62
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +RH H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
++ L H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 19 SAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 62
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +RH H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+++L H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 19 SADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 62
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +RH H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+SNL H+ HT KP++C C + F R+ L H TH G+ P
Sbjct: 19 SSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKP 62
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
NL +H HT KPY CN CG F R +L+ H H+ G+ P
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS-GEKP 73
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGKVFR N L RH H G+ P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIH-TGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
T KPYEC+ CGK F RN L H TH+ G+ P S
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHS-GESGPSS 43
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVG 82
KPY+CN CGKVF +N L RH H G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGG 38
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 39 VLTSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHAVGDVP 85
V +S LK H L HT KP++C CGK F + +LR H H GD P
Sbjct: 45 VESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRP 92
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 40 LTSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHA 80
L NL+TH+ HT +PY C + C K F ++ +L+ H LTHA
Sbjct: 76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLKRDN 101
S ++ HL TH + + C CGK F + L+RH L H G+ P + + G KR +
Sbjct: 21 SAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVH-TGEKPFQCTFE---GCGKRFS 75
Query: 102 L 102
L
Sbjct: 76 L 76
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 28 KSFTWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
K F + + N S+ L TH+ THT KP+ C+ CG+ F R+ + +RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 37 TNVLTSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTH 79
T +S+LK HL THT KPY C + CG F R+ +L RH H
Sbjct: 17 TYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 32 WKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRN 69
WK ++ LT H HT H+P++C C + F R+
Sbjct: 46 WKFARSDELTR----HYRKHTGHRPFQCQKCDRAFSRS 79
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVG 82
+S L H HT KPY+C CGK F +N L H H G
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY C CGK F R+ L +H H G+ P
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVH-TGEKP 42
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 37 TNVLTSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTH 79
T +S+LK HL THT KPY C + CG F R+ +L RH H
Sbjct: 16 TYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 32 WKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRN 69
WK ++ LT H HT H+P++C C + F R+
Sbjct: 45 WKFARSDELTR----HYRKHTGHRPFQCQKCDRAFSRS 78
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGKVF +N L RH H G+ P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH-TGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGKVF +N L RH H G+ P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH-TGEKP 40
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVF 66
+S+L H THT KPY+C+ CGK F
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ Y+C+ CGK F + DL +H TH G+ P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH-TGEKP 46
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGKVF +N L RH H G+ P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIH-TGEKP 40
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 15 AKDSVNPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRR 74
A++ +N ++T S + + L+ H+++HT PY+C+SC + F + DL+
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRM---ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Query: 75 HAL 77
H +
Sbjct: 113 HMI 115
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
LK H HT KP+EC CGK + R +L H
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGK FR + +L H + H G+ P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIH-TGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGK F + L RH H G+ P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH-TGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGK FR L H TH+ G+ P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHS-GEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
K Y+CN CGKVF RN L +H H G+ P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH-TGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 37 TNVLTSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
T +S+LK H THT KP+ C+ C + F R+ +L RH TH
Sbjct: 28 TYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGKVF +N L H H G+ P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH-TGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPYEC CGK F +N L RH + G+ P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+CN CGKVF +N L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHA 80
T P++CN CGK F + L +H L HA
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHA 36
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+CN CGK F + L RH H G+ P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIH-TGEKP 40
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESSLA 91
+NL TH+ HT KP++C C + F ++ L +H TH G+ P +
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH-TGEKPFACDIC 68
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVF 66
+ L H+ THT KP+ C+ CG+ F
Sbjct: 48 TGLNQHIRTHTGEKPFACDICGRKF 72
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 56 PYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
PYEC+ CGK F R L H THA G+ P S
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHA-GESGPSS 41
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+NL TH+ HT KP++C C + F + L H TH G+ P
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH-TGEKP 62
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 16 KDSVNPGLSLYT--KSFTWKNLLTNV-LTSNLKTHLLTHTDHKPYECNSCGKVF 66
K +++ + ++T K F + + N ++L H+ THT KP+ C+ CG+ F
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 36 LTNVLT--SNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHAVGDVPPESSLA 91
T V T S+LK HL THT KPY+C C F R+ +L RH H G P + +
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-TGAKPFQCGVC 81
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 31 TWKNLLTNVLTSN-LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
TW+ S+ L H HT KP++C C + F R+ L H H
Sbjct: 49 TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 56 PYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
PYEC+ CGK F R L H THA G+ P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHA-GEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
T KPY+C CGK FR +L H + H
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIH 35
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTHAVGDVP 85
KSF K L N H+ HT KP+ C CGK+F R+ +L+ H TH G+ P
Sbjct: 70 KSFKAKYKLVN--------HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH-TGEKP 120
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 41 TSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHAVGDVPPESS 89
+ NLK H THT KP++C C + F + D ++H H P S
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG 155
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHA 80
KPYECN CGK F L H THA
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHA 36
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESS 89
KPY CN CGK FR L H TH G+ P S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH-TGESGPSSG 44
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ LK H HT KP++C +C + F R+ L+ H TH G+ P
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH-TGEKP 94
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 41 TSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+ +LKTH THT KP+ C SC K F R+ +L RH H
Sbjct: 79 SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 42 SNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLKR 99
S+L+ H HT KPY+C+ C + F R+ L+RH H G P + + S +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFS-RS 79
Query: 100 DNLPPAPSPTGSQSSEDIEIERTPSEERSLEPSDML 135
D+L + T + + E R PS ++ SD L
Sbjct: 80 DHL---KTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHA 80
S LK H+ THTD +PY C C F+ +L +H + A
Sbjct: 15 SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
KPYECN C K F +L H TH G+ P S
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH-TGESGPSS 43
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY CN CGK F + L H TH G+ P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTH-TGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPYECN CGK F L H H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 56 PYECNSCGKVFRRNCDLRRHALTHA 80
PYEC CGKVF R L H TH+
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHA 76
+LK H +HT+ KPY C C + F R L RHA
Sbjct: 17 HLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP++C CGK FR+N L H H G+ P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIH-TGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ KPYEC CGK F L H TH G+ P S
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH-TGESGPSS 41
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPYEC CGK F + L +H H G+ P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVH-TGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 22 GLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH--ALTH 79
G + K F K+ L H+ HT KPYECN C K F RH + T
Sbjct: 39 GCGVCGKKFKMKHHLVG--------HMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK 90
Query: 80 AVGDVPPESSLAESIG 95
+ E + E+ G
Sbjct: 91 SYEAAKAEQNTTEASG 106
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPE 87
KSFT K S H+ H +PY C CGK F+ L H H G P E
Sbjct: 17 KSFTHK--------SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYE 67
Query: 88 SSLA 91
++
Sbjct: 68 CNIC 71
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLKRDNLPPAP 106
KPY C+ CGK ++ L H S LAE G K D+ PP P
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYA---------HSHLAEEEGEDKEDSQPPTP 48
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C+ CGK F + L +H +TH
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH 35
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 43 NLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRH 75
NLKTHL +HT KPY C C K F D +H
Sbjct: 84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+L H L+H+ KPY C CG F+R + H +H
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 59 CNSCGKVFRRNCDLRRHALTHA 80
C CGK+FR L RH L+H+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHS 31
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C+ CGK F R L H +H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY CN CGK F L H + H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
S L H H ++P C CGK FR ++ RH H
Sbjct: 17 ASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPYEC+ CGK F + L H H G+ P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH-TGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY C+ CGK FR L H TH G+ P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTH-TGEKP 38
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ KP CN CGK FR++ L +H H+ G+ P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHS-GEKP 38
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 58 ECNSCGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLK 98
EC+ CGK FR N L H TH G+ P + E + K
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTH-TGEKPYKCEFCEYAAAQK 45
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 29 SFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
S+ K +N L HL THT KPY+C C + LR H H
Sbjct: 8 SYCGKFFRSNYY---LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY CN CGK F + L +H H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C+ CGK F R+ L H H
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 2 STPRKNHSNVGNVAKDSVNPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
S P + NV V+ S+NP L WK++ V+ S + L K Y +
Sbjct: 197 SVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL-----KGYTSWA 251
Query: 62 CGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLKRDNLPPAPSPTGSQSSED-IEIE 120
G DL + + + V P S++ + + +K D P G D +++
Sbjct: 252 IG---LSVADLAESIMKN-LRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVT 307
Query: 121 RTPSEERSLEPS 132
TP EE L+ S
Sbjct: 308 LTPDEEARLKKS 319
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 44 LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHA 80
LKTH+ HT KPY+C +C + L +H H+
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+S+L HL H+D +P++C C R + L H +H GD P S
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH-TGDSGPSS 95
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C CGK ++R DL H H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHA 80
KPY+C CGK FR + L +H H+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHS 36
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 2 STPRKNHSNVGNVAKDSVNPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
S P + NV V+ S+NP L WK++ V+ S + L K Y +
Sbjct: 196 SVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL-----KGYTSWA 250
Query: 62 CGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLKRDNLPPAPSPTGSQSSED-IEIE 120
G DL + + + V P S++ + + +K D P G D +++
Sbjct: 251 IG---LSVADLAESIMKN-LRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVT 306
Query: 121 RTPSEERSLEPS 132
TP EE L+ S
Sbjct: 307 LTPDEEARLKKS 318
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C+ CGK F + +L RH H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY CN CGK F + L RH H G+ P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH-TGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KPY CN CGK F L H H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY C CGK F + L+ H H G+ P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH-TGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP++C CGK F +N L H H G+ P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH-TGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 0.89, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C +CG F + LR H L H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP++C CGK F +N L H H G+ P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVH-TGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPYEC+ CGK F + L H H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESS 89
+ KPY CN CGK F L H H G+ P S
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH-TGESGPSSG 42
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
T KP+ C++C K FR+ L H + H G+ P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH-TGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 42 SNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHA 80
+ LK H +HT PYEC C K F L+RH HA
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 42 SNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHA 80
+ LK H +HT PYEC C K F L+RH HA
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVPPESS 89
KP+EC CGK FR +L H H P S
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHA 80
+ L H+ HT KP++C C + F R+ L H TH
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 2 STPRKNHSNVGNVAKDSVNPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
S P + NV V S+NP + WKN+ V+ + D K Y +
Sbjct: 196 SVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV-----LDMKGYTSWA 250
Query: 62 CGKVFRRNCDLRRHALTHAVGDVPPESSLAESIGSLKRDNLPPAPSPTGSQSSED-IEIE 120
G DL R L + + V P ++L + +K + P G D +++
Sbjct: 251 IG---LSVTDLARSILKN-LKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVN 306
Query: 121 RTPSEERSLEPS 132
T EE L+ S
Sbjct: 307 MTAEEEGLLKKS 318
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 42 SNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTHA 80
+ LK H +HT PYEC C K F L+RH HA
Sbjct: 120 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 44 LKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
L+ HL HT KP+ C C K F L RH+LTH
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGD 83
KP++C CG F +C L +H +H D
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTD 39
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLT 50
PG ++Y KS K++ T+VLT N K H++T
Sbjct: 188 PGKNIYYKSDLTKDITTSVLTVNNKAHMVT 217
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLT 50
PG ++Y KS K++ T+VLT N K H++T
Sbjct: 188 PGKNIYYKSDLTKDITTSVLTVNNKAHMVT 217
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLT 50
PG ++Y KS K++ T+VLT N K H++T
Sbjct: 189 PGKNIYYKSDLTKDITTSVLTVNNKAHMVT 218
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY C CGK FR L +H H+ G+ P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHS-GEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C CGK F + +L +H H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 50 THTDHKPYECNSCGKVFRR 68
THT KPY C+ C K FR+
Sbjct: 9 THTGEKPYACSHCDKTFRQ 27
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 ECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
EC CGK+FR + L H HA G+ P S
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHA-GESGPSS 43
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAV 81
KP++C+ CGK F L RH++ H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTA 37
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPYEC+ C K F + L +H H+ G+ P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHS-GEKP 40
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLT 50
PG ++Y KS K++ T+VLT N K H++T
Sbjct: 188 PGKNIYYKSDLTKDITTSVLTVNNKAHMVT 217
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHA 80
KPYEC+ CGK F L H H+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
K C CGK+FR L RH L+H+ G+ P S
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHS-GEKPYSS 43
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C CGK + R +L H H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + YEC CGK FR+ L H H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KPY+C CGK F + L H H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY C+ CGK F L H TH+ G+ P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHS-GEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPYEC C K F + L +H TH
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C+ CGK F + L H H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP+EC CGK F + L H H G+ P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH-TGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
K +EC CGK F R L H H G+ P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH-TGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY+C CGK F DL H + H G+ P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVH-TGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP+EC+ C K F +L H TH G+ P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTH-TGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 57 YECNSCGKVFRRNCDLRRHALTHAVGDVP 85
YEC+ CGK F R L H H G+ P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIH-TGEKP 40
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 57 YECNSCGKVFRRNCDLRRHALTH 79
Y CN CGK F R L RH H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C+ CGK F LR H H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ KPY C CGK F R H H G+ P S
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH-TGESGPSS 41
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ KPY C CGK F ++ L H H G+ P S
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH-TGESGPSS 41
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 54 HKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+PYEC CGK F+ L H +H G+ P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH-TGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHA 80
+P++CN CGK F R L H H+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C CGK F N +H H
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLH 35
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
+PY CN CGK F R+ L H H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+P++CN CGK F ++ L +H H G+ P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIH-TGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP+EC CGK F N L H H G+ P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH-TGENP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP++C CGK F N H +H+ G+ P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHS-GEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 44 LKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
L+ HL HT KP+ C C K F L RH+LTH
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KPY CN CGK F L H H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KPY C CGK F +L H H G+ P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH-TGEKP 40
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLT 50
PG ++Y KS K++ T+VL N K H++T
Sbjct: 190 PGKNIYYKSDLTKDVTTSVLIVNNKAHMVT 219
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C CGK F +L +H H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
KP++C CGK + + L +H H G+ P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH-TGEKP 40
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLT 50
PG ++Y KS K++ T+VL N K H++T
Sbjct: 191 PGKNIYYKSDLTKDVTTSVLIVNNKAHMVT 220
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
+PY C+ C K F RN DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KP++C CGK F + L +H H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ K +ECN+CGK F L H H G+ P S
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH-TGESGPSS 41
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ KPY C C + F N L +H H V P
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGP 39
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHA 80
KP++C +C + F R+ L+ H TH
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,989,808
Number of Sequences: 62578
Number of extensions: 169415
Number of successful extensions: 503
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 232
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)