RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8702
(194 letters)
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 57.4 bits (140), Expect = 8e-12
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF S L THLL H+D +PY C CGK F + D+++H H
Sbjct: 9 KSFKRS--------STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 53.2 bits (129), Expect = 4e-10
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F K S++K H HT KP++C CGK F ++ +L H+ H
Sbjct: 37 KRFHQK--------SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 36.2 bits (85), Expect = 7e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 57 YECNSCGKVFRRNCDLRRHALTH 79
++C CGK F+R+ L H L H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH 24
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 57.4 bits (140), Expect = 1e-11
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ S+L HL H+D +P++C C R + L H +H
Sbjct: 44 YAAADS--------SSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 55.9 bits (136), Expect = 5e-11
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F+ K LKTH+ HT KPY+C +C + L +H H
Sbjct: 16 KCFSRK--------DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 48.2 bits (116), Expect = 3e-08
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ P++C CGK F R L+ H H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH 31
Score = 32.4 bits (75), Expect = 0.023
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
+ S L HL +HT
Sbjct: 72 YASRNS--------SQLTVHLRSHTGDSGPSS 95
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 57.2 bits (139), Expect = 1e-11
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTD----HKPYECNSCGKVFRRNCDLRRHALTH 79
K+F K L H + D + C+ CGK F R + RHA
Sbjct: 23 KTFRQK--------QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 52.5 bits (127), Expect = 8e-10
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + THT KPY C+ C K FR+ L H +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 45.6 bits (109), Expect = 3e-07
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 8/39 (20%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVF 66
K+FT + + + H E + G
Sbjct: 55 KTFTRR--------NTMARHADNCAGPDGVEGENSGPSS 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 57.1 bits (139), Expect = 1e-11
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
++F+ +L TH+ THT KP+ C+ CG+ F R+ + +RH
Sbjct: 11 RNFSRS--------DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 49.0 bits (118), Expect = 1e-08
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 9/48 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+ F K H P + ++ +N L
Sbjct: 39 RKFARS--------DERKRHRDIQHI-LPILEDKVEELLSKNYHLENE 77
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KP++C C + F R+ L H TH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 57.1 bits (139), Expect = 2e-11
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ FT NL H THTD +PY C+ C K FRR LR H H
Sbjct: 25 RHFTKS--------YNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Score = 52.8 bits (128), Expect = 1e-09
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
S L K + C CG+ F ++ +L H TH
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
Score = 52.4 bits (127), Expect = 1e-09
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K+F + +L+ H H+ KP++C CGK F ++ L H H
Sbjct: 53 KAFRRQ--------DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 34.3 bits (80), Expect = 0.004
Identities = 6/34 (17%), Positives = 6/34 (17%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F L H H S
Sbjct: 81 KGFCQS--------RTLAVHKTLHMQTSSPTAAS 106
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 55.9 bits (136), Expect = 3e-11
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
SF +K NL +H HT KPY CN CG F R +L+ H H
Sbjct: 25 ASFRYK--------GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 53.2 bits (129), Expect = 3e-10
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 40 LTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + H KPY+C+ C FR +L H H
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 8/30 (26%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPY 57
F +NLKTH H+ KPY
Sbjct: 53 AQFNRP--------ANLKTHTRIHSGEKPY 74
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 55.9 bits (136), Expect = 4e-11
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+L TH+ THT KP+ C+ CG+ F R+ + +RH H
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ F+ +L H+ HT KP++C C + F R+ L H TH
Sbjct: 14 RRFSQS--------GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 34.7 bits (81), Expect = 0.003
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 55 KPYECNS--CGKVFRRNCDLRRHALTH 79
+PY C C + F ++ L RH H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIH 29
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 55.2 bits (134), Expect = 5e-11
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
S + K + L+ H H +P++CN C ++ +L +H
Sbjct: 17 YSCSSK--------AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 45.2 bits (108), Expect = 3e-07
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + P +C+ C LR H H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F +L H L+H+ KPY C CG F+R + H +H
Sbjct: 15 KIFRDV--------YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 49.8 bits (120), Expect = 1e-08
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHT--DHKPYECNSCGKVFRRNCDLRRH 75
F K + H+ +H KPY C SCGK F R L H
Sbjct: 43 LRFKRK--------DRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 46.3 bits (111), Expect = 2e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ C CGK+FR L RH L+H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH 30
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 55.2 bits (134), Expect = 7e-11
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHT--DHKPYECNSCGKVFRRNCDLRRH 75
FT +K H+L + + C C V R DL H
Sbjct: 23 ARFTQS--------GTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 54.1 bits (131), Expect = 2e-10
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 43 NLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPP 86
+ + TH+ KPYEC C F ++ ++ H L +V
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK 45
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 56.7 bits (138), Expect = 1e-10
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF+ +L H THT KPY+C CGK F DL RH TH
Sbjct: 29 KSFSRS--------DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Score = 56.3 bits (137), Expect = 2e-10
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF+ ++L+ H THT KPY+C CGK F R +L H TH
Sbjct: 113 KSFSQL--------AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 56.3 bits (137), Expect = 2e-10
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF+ K +L H THT KPY+C CGK F + +LR H TH
Sbjct: 57 KSFSDK--------KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 55.9 bits (136), Expect = 3e-10
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF+ + NL TH THT KPY+C CGK F R L H TH
Sbjct: 141 KSFSRE--------DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 55.1 bits (134), Expect = 6e-10
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF+ + +NL+ H THT KPY C CGK F + LR H TH
Sbjct: 85 KSFSQR--------ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 54.4 bits (132), Expect = 1e-09
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 29 SFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
S S+ KPY C CGK F R+ L H TH
Sbjct: 2 SEFGS--------SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ F+ LK H HT KP++C +C + F R+ L+ H TH
Sbjct: 46 RRFSRS--------DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 52.5 bits (127), Expect = 1e-09
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
K + S+L+ H HT KPY+C+ C + F R+ L+RH H
Sbjct: 16 KRYFKL--------SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Score = 51.8 bits (125), Expect = 3e-09
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
+ F+ +LKTH THT KP+ C C K F R+ +L RH H
Sbjct: 74 RKFSRS--------DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.1 bits (87), Expect = 5e-04
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
+P+ C C K + + L+ H+ H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKH 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 54.8 bits (133), Expect = 2e-10
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSFT K S H+ H +PY C CGK F+ L H H
Sbjct: 17 KSFTHK--------SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 50.9 bits (123), Expect = 5e-09
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
K F K +L H+ HT KPYECN C K F RH
Sbjct: 45 KKFKMK--------HHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 42.8 bits (102), Expect = 5e-06
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 10/46 (21%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLR 73
K F W+ + H + K YE +
Sbjct: 73 KRFMWR--------DSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 42.0 bits (100), Expect = 1e-05
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ K Y C CGK F RH H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH 32
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 53.9 bits (130), Expect = 2e-10
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 11/62 (17%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTD---HKPYECNSCGKVFRRNCDLRRHALTHAVGDV 84
+ K ++L H H + + C CGK F + + H +
Sbjct: 15 FTCRQK--------ASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 85 PP 86
Sbjct: 67 LA 68
Score = 41.2 bits (97), Expect = 1e-05
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ +C CG R+ L H H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH 30
Score = 25.8 bits (57), Expect = 3.6
Identities = 6/40 (15%), Positives = 8/40 (20%), Gaps = 9/40 (22%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLT-HTDHKPYECNSCGKVF 66
K F ++ H H S G
Sbjct: 46 KRFEKP--------DSVAAHRSKSHPALLLAPQESSGPSS 77
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 54.8 bits (133), Expect = 3e-10
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
K F K LK H HT KP+EC CGK + R +L H
Sbjct: 15 KKFLSK--------YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 54.8 bits (133), Expect = 3e-10
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
++F + L+ H+++HT PY+C+SC + F + DL+ H
Sbjct: 74 ETFRRR--------MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 54.0 bits (131), Expect = 5e-10
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 28 KSFTWKNLLTNVLTSNLKTH---LLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K + K NL H + + + C+ C + FRR +LR H ++H
Sbjct: 43 KCYFRK--------ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 46.0 bits (110), Expect = 4e-07
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ EC +C K F L+ H H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 56.1 bits (136), Expect = 3e-10
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
++ L+ HL HT KP+ C C K F L RH+LTH
Sbjct: 22 AAYNKN--------WKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 54.1 bits (131), Expect = 1e-09
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
K FT +L H LTHT K + C+ C F ++++H
Sbjct: 52 KGFTSL--------HHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 54.1 bits (131), Expect = 1e-09
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
K+F + LK H +HT PYEC C K F L+RH H
Sbjct: 114 KAFKKH--------NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 48.7 bits (117), Expect = 1e-07
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHK--PYECNS--CGKVFRRNCDLRRHALTH 79
FT K +N+K H + K Y C+ CGK F+++ L+ H +H
Sbjct: 82 LRFTTK--------ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 45.3 bits (108), Expect = 2e-06
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 47 HLLTHTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
+K Y C+ CG + +N L+ H H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH 37
Score = 41.4 bits (98), Expect = 5e-05
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHT---DHKPYECNSCGKVFRRNCDLRRHALTH 79
K F+ S LK H H K C+ GK + L+ A H
Sbjct: 144 KRFSLP--------SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY--LKHVAECH 188
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.6 bits (127), Expect = 5e-10
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 42 SNLKTHLLT--HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
SN H +T + K Y C C K F R ++ H
Sbjct: 24 SNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 46.8 bits (112), Expect = 7e-08
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
T Y C C +V+ + RH +T
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 52.8 bits (128), Expect = 5e-10
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSF+ S+L H THT KPY+C+ CGK F + L H H
Sbjct: 26 KSFSHS--------SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 51.7 bits (125), Expect = 1e-09
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + Y+C+ CGK F + DL +H TH
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 24.7 bits (55), Expect = 8.5
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 8/31 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYE 58
K+F + S+L H HT P
Sbjct: 54 KAFIQR--------SHLIGHHRVHTGSGPSS 76
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 52.5 bits (127), Expect = 2e-09
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
K+F S LK H L HT KP++C CGK F + +LR H H
Sbjct: 42 KAFVES--------SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 52.5 bits (127), Expect = 2e-09
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K F S ++ HL TH + + C CGK F + L+RH L H
Sbjct: 15 KMFRDN--------SAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVH 57
Score = 51.7 bits (125), Expect = 3e-09
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTH 79
K F+ NL+TH+ HT +PY C + C K F ++ +L+ H LTH
Sbjct: 72 KRFSLD--------FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 55 KPYEC--NSCGKVFRRNCDLRRHALTH 79
+ C C K+FR N +R+H TH
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH 30
Score = 30.6 bits (70), Expect = 0.13
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYE 58
K F +NLK+H+LTH K +
Sbjct: 102 KKFAQS--------TNLKSHILTHAKAKNNQ 124
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 50.6 bits (122), Expect = 3e-09
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 27 TKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHA 76
T++F + +LK H +HT+ KPY C C + F R L RHA
Sbjct: 9 TRAFARQ--------EHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 41.7 bits (99), Expect = 4e-06
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
+ + C C + F R L+RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 50.6 bits (122), Expect = 4e-09
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 41 TSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+S+LK HL THT KPY C+ CG F R+ +L RH H
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
L H HT H+P++C C + F R+ L H H
Sbjct: 51 DELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
T + CGK + ++ L+ H TH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH 30
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 50.2 bits (121), Expect = 4e-09
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
K+F+ S L H HT KPY+C CGK F +N L H H
Sbjct: 22 KAFSRS--------SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 46.3 bits (111), Expect = 1e-07
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 44 LKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
H+ KPY C CGK F R+ L +H H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH 37
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 50.7 bits (122), Expect = 4e-09
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
K+F + LK H +HT PYEC C K F L+RH H
Sbjct: 11 KAFKKH--------NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 40.3 bits (95), Expect = 2e-05
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
S LK H H + + +SC V + +H
Sbjct: 47 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
Score = 29.5 bits (67), Expect = 0.20
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 57 YECN--SCGKVFRRNCDLRRHALTH 79
Y C+ +CGK F+++ L+ H +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 4e-09
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPY CN CGK F + L H TH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 32.5 bits (75), Expect = 0.008
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN 60
K+F+ K S L H THT KP +
Sbjct: 20 KTFSQK--------SILSAHQRTHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.4 bits (119), Expect = 4e-09
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY CN CGK FR L H TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.015
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
K+F K S L H THT
Sbjct: 20 KAFRSK--------SYLIIHTRTHTGESGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.1 bits (118), Expect = 5e-09
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KP++C CGK F N H +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 9/36 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCG 63
K F S +H +H+ KP S G
Sbjct: 20 KGFYTN--------SQCYSHQRSHSGEKPSGP-SSG 46
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 6e-09
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY CN CGK F + L RH H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 31.7 bits (73), Expect = 0.014
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF K S+L H HT KP +S
Sbjct: 20 KSFIQK--------SHLNRHRRIHTGEKPSGPSS 45
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.0 bits (118), Expect = 6e-09
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYECN C K F +L H TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.5 bits (75), Expect = 0.007
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
K+F K SNL H THT
Sbjct: 20 KAFNTK--------SNLMVHQRTHTGESGPSS 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.0 bits (118), Expect = 6e-09
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ + T PYEC CGKVF R L H TH G P S
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH-SGQSGPSS 43
Score = 28.2 bits (64), Expect = 0.20
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
K F+ K L +H TH+
Sbjct: 20 KVFSRK--------DQLVSHQKTHSGQSGPSS 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 49.9 bits (120), Expect = 7e-09
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 28 KSFTWKNLLTNVLTSNLKTHL-LTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+ F+ + L H H K + C +CGK F L+ H H
Sbjct: 17 RIFSNR--------QYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 47.2 bits (113), Expect = 6e-08
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVF 66
KSF +K +LK H+ H+D + Y C G
Sbjct: 48 KSFNFK--------KHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 37.1 bits (87), Expect = 3e-04
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 51 HTDHKPYECNS--CGKVFRRNCDLRRH 75
+ C+ CG++F L H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHH 28
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 7e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPY+C CGK ++R DL H H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 32.1 bits (74), Expect = 0.008
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K + + +L H HT K +S
Sbjct: 20 KGYKRR--------LDLDFHQRVHTGEKLSGPSS 45
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 50.3 bits (121), Expect = 7e-09
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 41 TSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+S+LK HL THT KPY+C C F R+ +L RH H
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Score = 48.4 bits (116), Expect = 3e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
L H HT KP++C C + F R+ L H H
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 32.2 bits (74), Expect = 0.028
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
H P C KV+ ++ L+ H TH
Sbjct: 7 GPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH 40
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 7e-09
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGKVF +N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 30.2 bits (69), Expect = 0.043
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S+L H HT KP +S
Sbjct: 26 SHLARHRRVHTGGKPSGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 8e-09
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYEC C K F + L +H TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 31.3 bits (72), Expect = 0.018
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN 60
K+FT K ++L H THT KP +
Sbjct: 20 KAFTQK--------AHLAQHQKTHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 8e-09
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGKVF +N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.5 bits (70), Expect = 0.036
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K FT S+L H HT KP +S
Sbjct: 20 KVFTQN--------SHLARHRGIHTGEKPSGPSS 45
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 9e-09
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGKVFR N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 31.7 bits (73), Expect = 0.014
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F S L H HT KP +S
Sbjct: 20 KVFRHN--------SYLSRHQRIHTGEKPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGK FR + +L H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 32.9 bits (76), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F SNL TH + HT KP +S
Sbjct: 20 KAFRAH--------SNLTTHQVIHTGEKPSGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGKVF +N L RH H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.6 bits (70), Expect = 0.036
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S+L H HT KP +S
Sbjct: 26 SHLARHRGIHTGEKPSGPSS 45
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 51.1 bits (123), Expect = 1e-08
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 22 GLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
G S + F + L H+ HT KP++C C K + R +L+ H +H
Sbjct: 41 GCSRELRPFKAQ--------YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 48.7 bits (117), Expect = 6e-08
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 42 SNLKTHLL-THTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
S+ H TH++ KPY C C K + LR+H T
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 48.7 bits (117), Expect = 7e-08
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 42 SNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRH-ALTH 79
NLKTHL +HT KPY C C K F D +H TH
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 41.0 bits (97), Expect = 4e-05
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 42 SNLKTHLLT---HTDHKPYECNSCG-----KVFRRNCDLRRHALTH 79
L H+ + H + K + C+ G + F+ L H H
Sbjct: 17 EQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Score = 38.0 bits (89), Expect = 5e-04
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHAVG 82
+ C + F L H + +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIH 29
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.2 bits (116), Expect = 1e-08
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGKVF +N L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 30.5 bits (70), Expect = 0.038
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S+L H HT KP +S
Sbjct: 26 SHLVRHRGIHTGEKPSGPSS 45
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 48.4 bits (116), Expect = 1e-08
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP++C CG F +C L +H +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
+F+W +L HL +H P +S
Sbjct: 20 MNFSWS--------CSLFKHLRSHERTDPSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGKVF +N L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.0 bits (71), Expect = 0.023
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K FT S+L H HT KP +S
Sbjct: 20 KVFTQN--------SHLANHQRIHTGVKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.2 bits (116), Expect = 1e-08
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C+ CGKVFRRN L RH L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 30.1 bits (69), Expect = 0.049
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S+L H L HT KP +S
Sbjct: 26 SHLARHQLIHTGEKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGK FR L H TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 32.1 bits (74), Expect = 0.010
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F + S+L H TH+ KP +S
Sbjct: 20 KAFRAR--------SSLAIHQATHSGEKPSGPSS 45
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 47.9 bits (115), Expect = 1e-08
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ + + KPYECN CGK F L H THA G P S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-GVSGPSS 43
Score = 29.8 bits (68), Expect = 0.053
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
K+F WK S L H TH
Sbjct: 20 KAFIWK--------SLLIVHERTHAGVSGPSS 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP++C+ CGK F L RH++ H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 33.2 bits (77), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF + S L H + HT KP +S
Sbjct: 20 KSFCGR--------SRLNRHSMVHTAEKPSGPSS 45
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C+ CGK F R L H +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+FT K S L H +HT + +S
Sbjct: 20 KAFTRK--------SGLHIHQQSHTGERHSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGK F + L RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 30.6 bits (70), Expect = 0.034
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S L H HT KP +S
Sbjct: 26 SKLARHQRIHTGEKPSGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+CN CGK F + L RH H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 30.6 bits (70), Expect = 0.034
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 41 TSNLKTHLLTHTDHKPYECNS 61
TS L H HT KP +S
Sbjct: 25 TSKLARHQRVHTGEKPSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C+ CGK F LR H H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSFTWK S L+ H HT + +S
Sbjct: 20 KSFTWK--------SRLRIHQKCHTGERHSGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C CGK F DL H + H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F + +L TH + HT KP +S
Sbjct: 20 KGFICR--------RDLYTHHMVHTGEKPSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 47.9 bits (115), Expect = 2e-08
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+ + T KPYEC CGK F +N L RH
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 27.9 bits (63), Expect = 0.33
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHL-LTHTDHKPYECNS 61
K+F ++L H HT KP +S
Sbjct: 20 KAFIQN--------TSLIRHWRYYHTGEKPSGPSS 46
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.6 bits (114), Expect = 2e-08
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ TD K Y CN CGK F R L RH H P S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-RKSGPSS 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T K Y C CGK F R L +H H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 31.0 bits (71), Expect = 0.023
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF+ L H H+ KP +S
Sbjct: 20 KSFSRA--------PCLLKHERLHSGEKPSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPYEC C K F + L +H H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 30.6 bits (70), Expect = 0.030
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F +L H HT + +S
Sbjct: 20 KTFIQI--------GHLNQHKRVHTGERSSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KP++C CGK FR+N L H H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 31.3 bits (72), Expect = 0.020
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F +L +HL HT KP +S
Sbjct: 20 KAFRQN--------IHLASHLRIHTGEKPSGPSS 45
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 47.5 bits (114), Expect = 2e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY C+ C K F L H +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ K S L H +HT KP +S
Sbjct: 20 KTFSLK--------SQLIVHQRSHTGVKPSGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 47.5 bits (114), Expect = 2e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP+EC CGK FR +L H H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 32.9 bits (76), Expect = 0.004
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 8/33 (24%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN 60
KSF K NL TH HT K +
Sbjct: 20 KSFRAK--------GNLVTHQRIHTGEKSGPSS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KP++C CGK F +N L H H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.1 bits (74), Expect = 0.009
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K FT S L +H HT KP +S
Sbjct: 20 KRFTQN--------SQLHSHQRVHTGEKPSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY C CGK F + L+ H H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 32.1 bits (74), Expect = 0.010
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F S L+ H HT KP +S
Sbjct: 20 KAFIHD--------SQLQEHQRIHTGEKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T K Y+CN CGKVF RN L +H H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 30.2 bits (69), Expect = 0.049
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S L H HT KP +S
Sbjct: 26 SQLSQHQKIHTGEKPSGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T +PYEC CGK F+ L H +H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 31.0 bits (71), Expect = 0.021
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN 60
K+F K S+L H +HT KP +
Sbjct: 20 KAFKTK--------SSLICHRRSHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYECN CGK F L H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 31.3 bits (72), Expect = 0.017
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ + S+L TH HT KP +S
Sbjct: 20 KAFSVR--------SSLTTHQAIHTGKKPSGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY C CGK F +L +H H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 32.9 bits (76), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+FT + SNL H HT KP +S
Sbjct: 20 KAFTIR--------SNLIKHQKIHTKQKPSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C+ C K FR L H H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF + S+L H HT KP +S
Sbjct: 20 KSFRYG--------SSLTVHQRIHTGEKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPY+CN CGKVF +N L H H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 30.9 bits (71), Expect = 0.023
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K FT S+L H HT KP +S
Sbjct: 20 KVFTQN--------SHLTNHWRIHTGEKPSGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY CN CGK F L H + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 31.3 bits (72), Expect = 0.017
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ S+L TH + HT KP +S
Sbjct: 20 KAFSVY--------SSLTTHQVIHTGEKPSGPSS 45
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPY C+ CGK F + +L RH H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 30.6 bits (70), Expect = 0.035
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F + L H HT KP +S
Sbjct: 20 KAFGLS--------AELVRHQRIHTGEKPSGPSS 45
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 3e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C CGK F N +H H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 29.9 bits (68), Expect = 0.069
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S+ H HT +P +S
Sbjct: 26 SSCTQHQRLHTGQRPSGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP++C CGK F + L +H H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 29.4 bits (67), Expect = 0.080
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
L H HT KP +S
Sbjct: 26 IGLNQHRRIHTGEKPSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 47.2 bits (113), Expect = 3e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY C CGK FR L +H H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 32.2 bits (74), Expect = 0.008
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 8/33 (24%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECN 60
KSF W S L H H+ KP +
Sbjct: 20 KSFRWA--------SCLLKHQRVHSGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP++C CGK + + L +H H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 31.0 bits (71), Expect = 0.024
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KS+ + +L H HT KP +S
Sbjct: 20 KSYNQR--------VHLTQHQRVHTGEKPSGPSS 45
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T +P++CN CGK F ++ L +H H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 29.8 bits (68), Expect = 0.062
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF ++L H HT KP +S
Sbjct: 20 KSFIQS--------AHLIQHQRIHTGEKPSGPSS 45
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY C CGK F + +L +H H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 32.5 bits (75), Expect = 0.008
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F K +NL H HT KP +S
Sbjct: 20 KAFAQK--------ANLTQHQRIHTGEKPSGPSS 45
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T K +EC CGK F R L H H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 31.0 bits (71), Expect = 0.023
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+FT K S L H HT KP +S
Sbjct: 20 KAFTRK--------STLSMHQKIHTGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYEC+ C K F + L +H H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 30.2 bits (69), Expect = 0.054
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
++L H H+ KP +S
Sbjct: 26 ASLTQHQRVHSGEKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPY+C CGK + R +L H H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 32.9 bits (76), Expect = 0.005
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K + + NL H H K +S
Sbjct: 20 KGYNRR--------LNLDMHQRVHMGEKTSGPSS 45
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 46.7 bits (112), Expect = 4e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KPY+C +CG F + LR H L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.5 bits (62), Expect = 0.38
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 42 SNLKTHLLTHTDHKPY 57
++L+ H+L HT P
Sbjct: 25 AHLRAHVLIHTGSGPS 40
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 4e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + KPY C+ CGK F L H TH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 31.0 bits (71), Expect = 0.021
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCG 63
K+F+ K S L H+ TH+ KP S G
Sbjct: 20 KAFSSK--------SYLIIHMRTHSGEKPSGP-SSG 46
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + K ++CN C K F ++ L H H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 32.1 bits (74), Expect = 0.008
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+FT S+L H HT KP +S
Sbjct: 20 KTFTQS--------SSLTVHQRIHTGEKPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T PYEC+ CGK F R L H TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 32.1 bits (74), Expect = 0.008
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ K L +H TH KP +S
Sbjct: 20 KAFSRK--------YQLISHQRTHAGEKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T P+ C+ CGKVF +L H H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 32.9 bits (76), Expect = 0.005
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K FT K +NL H HT +P +S
Sbjct: 20 KVFTHK--------TNLIIHQKIHTGERPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ T KPY CN CGK F + L +H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 29.0 bits (66), Expect = 0.13
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F ++L HL HT +S
Sbjct: 20 KAFVLS--------AHLNQHLRVHTQETLSGPSS 45
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP+EC+ C K F +L H TH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 31.7 bits (73), Expect = 0.012
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCG 63
K+F K SNL H THT KP S G
Sbjct: 20 KAFNTK--------SNLIVHQRTHTGEKPSGP-SSG 46
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 4e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KP++C CGK F +N L H H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 31.4 bits (72), Expect = 0.020
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K FT S+L +H HT KP +S
Sbjct: 20 KRFTQN--------SHLHSHQRVHTGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 4e-08
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + K Y+C+ CGK F ++ L+ H H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.7 bits (73), Expect = 0.015
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F+ S+L+TH HT KP +S
Sbjct: 20 KEFSQS--------SHLQTHQRVHTGEKPSGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 4e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T + YEC+ CGK F + L H H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.3 bits (72), Expect = 0.021
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F K S L H H KP +S
Sbjct: 20 KAFIQK--------STLSMHQRIHRGEKPSGPSS 45
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 5e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + KPY+C+ CGK F R+ L H H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 30.2 bits (69), Expect = 0.046
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
++L H HT ++P +S
Sbjct: 26 THLNEHRRIHTGYRPSGPSS 45
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 49.2 bits (118), Expect = 5e-08
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC--NSCGKVFRRNCDLRRHALTH 79
K F NLK H THT KP++C C + F + D ++H H
Sbjct: 100 KIFARS--------ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 48.1 bits (115), Expect = 1e-07
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS--CGKVFRRNCDLRRHALTH 79
KSF K L H+ HT KP+ C CGK+F R+ +L+ H TH
Sbjct: 70 KSFKAK--------YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 46.1 bits (110), Expect = 7e-07
Identities = 5/39 (12%), Positives = 8/39 (20%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ SC + F +L H
Sbjct: 10 IKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
Score = 41.5 bits (98), Expect = 3e-05
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 17/61 (27%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPY---------ECNSCGKVFRRNCDLRRHALT 78
++F+ L TH+ P EC GK F+ L H
Sbjct: 33 RTFSTM--------HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 79 H 79
H
Sbjct: 85 H 85
Score = 34.6 bits (80), Expect = 0.008
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 42 SNLKTHLLTHTDHKPYECN 60
S+ K H+ HT K +
Sbjct: 136 SDRKKHMHVHTSDKSGPSS 154
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 5e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY C CGK F +L H H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 31.3 bits (72), Expect = 0.020
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+FT + SNL TH HT KP +S
Sbjct: 20 KAFTDR--------SNLFTHQKIHTGEKPSGPSS 45
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 6e-08
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + K ++C C F + LR H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
F+ S+L+ H H KP +S
Sbjct: 20 MCFSQA--------SSLRLHQNVHVGEKPSGPSS 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 46.4 bits (111), Expect = 6e-08
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ PYEC+ CGK F R L H THA G+ P S
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHA-GESGPSS 41
Score = 29.4 bits (67), Expect = 0.086
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
K+F K L +H TH
Sbjct: 18 KAFNRK--------DQLISHQRTHAGESGPSS 41
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 6e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + +P++CN CGK F R L H H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 31.7 bits (73), Expect = 0.011
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F + S+L HL H+ K +S
Sbjct: 20 KGFGRR--------SHLAGHLRLHSREKSSGPSS 45
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 46.3 bits (111), Expect = 6e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP+EC CGK F + L H H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 30.5 bits (70), Expect = 0.039
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF+ S L TH HT KP +S
Sbjct: 20 KSFSIS--------SQLATHQRIHTGEKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 46.4 bits (111), Expect = 6e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP++C CGK F R L H H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 31.0 bits (71), Expect = 0.025
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F+ + S L H HT KP +S
Sbjct: 20 KGFSRR--------SALNVHHKLHTGEKPSGPSS 45
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 46.0 bits (110), Expect = 7e-08
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KPY C CG FR L+ H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 28.2 bits (64), Expect = 0.24
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 42 SNLKTHLLTHTDHKPY 57
LK+HL HT P
Sbjct: 25 QTLKSHLRIHTGSGPS 40
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 7e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T +PY C CGK F +L +H H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 32.8 bits (76), Expect = 0.006
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+FT + SNL H HT KP +S
Sbjct: 20 KAFTDR--------SNLIKHQKIHTGEKPSGPSS 45
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 8e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYEC+ CGK F + L H H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.6 bits (70), Expect = 0.034
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF K S L H HT P +S
Sbjct: 20 KSFIKK--------SQLHVHQRIHTGENPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 46.0 bits (110), Expect = 8e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYEC CGK F + L +H H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 29.8 bits (68), Expect = 0.057
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ ++L H HT KP +S
Sbjct: 20 KAFSQT--------THLIQHQRVHTGEKPSGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 8e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP +C CGK F L H TH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F WK S L H TH D K +S
Sbjct: 20 KAFCWK--------SQLIMHQRTHVDDKHSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 8e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KP+EC CGK F N L H H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 31.0 bits (71), Expect = 0.025
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF++ S L H HT P +S
Sbjct: 20 KSFSFN--------SQLIVHQRIHTGENPSGPSS 45
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 9e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T + YEC+ CGK F R L H H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.9 bits (71), Expect = 0.025
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F K S L H HT KP +S
Sbjct: 20 KAFARK--------STLIMHQRIHTGEKPSGPSS 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 9e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPYEC+ CGK F + L H H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 32.5 bits (75), Expect = 0.007
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSFT K S L H HT KP +S
Sbjct: 20 KSFTKK--------SQLHVHQQIHTGEKPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-07
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ T KPYEC+ CGK F L H H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 30.9 bits (71), Expect = 0.028
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ + +L H H+ KP +S
Sbjct: 20 KAFSHR--------QSLSVHQRIHSGKKPSGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + T KPY+C CGK + +L H H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K + K NL H HT +P +S
Sbjct: 20 KGYNSK--------FNLDMHQKVHTGERPSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + +PY CN CGK F R+ L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 28.3 bits (64), Expect = 0.22
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
S+L HL H K +S
Sbjct: 26 SHLIEHLKRHFREKSSGPSS 45
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + KPY+C+ CGK F + L +H +TH
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 31.4 bits (72), Expect = 0.015
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF+ L H +THT KP +S
Sbjct: 20 KSFSGS--------YRLTQHWITHTREKPSGPSS 45
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + PY+C+ C K F L H H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
KSF+ K L H HT KP +S
Sbjct: 20 KSFSGK--------LRLLVHQRMHTREKPSGPSS 45
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.5 bits (107), Expect = 2e-07
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHA 80
S LK H+ THTD +PY C C F+ +L +H + A
Sbjct: 15 SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 29.7 bits (66), Expect = 0.10
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 57 YECNSCGKVFRRNCDLRRHALTHA 80
Y C CG ++ L++H TH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT 25
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ T KPY+C CGK FR + L +H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 29.8 bits (68), Expect = 0.066
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F S+L H H+ +P +S
Sbjct: 20 KAFRVS--------SHLVQHHSVHSGERPSGPSS 45
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 45.4 bits (108), Expect = 2e-07
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
L H+ HT KP++C C + F R+ L H TH
Sbjct: 35 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.2 bits (92), Expect = 4e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 42 SNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+NL +++ +PY C SC + F R+ +L RH H
Sbjct: 7 NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIH 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.6 bits (106), Expect = 3e-07
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
+ KPY C C + F N L +H H P S
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHT-VKSGPSS 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 44.5 bits (106), Expect = 3e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+ + + KPY C SCGK F R L H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
Score = 37.2 bits (87), Expect = 2e-04
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 9/40 (22%)
Query: 28 KSFTWKNLLTNVLTSNLKTHL-LTHTDHKPYECNSCGKVF 66
K F+ +L H+ HT +P++C
Sbjct: 20 KGFSRP--------DHLNGHIKQVHTSERPHKCQVWVSGP 51
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 44.1 bits (105), Expect = 3e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KPY C+ CGK F + L H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 4e-07
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + K ++C+ CG+ F L +H H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 26.0 bits (58), Expect = 1.7
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
+ FT K S+L H HT KP +S
Sbjct: 20 RGFTLK--------SHLNQHQRIHTGEKPSGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 44.1 bits (105), Expect = 4e-07
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + YEC CGK FR+ L H H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 4e-07
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + + + C+ CGK F + + +H H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.5 bits (62), Expect = 0.49
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K F SN H HT KP +S
Sbjct: 20 KFFLQA--------SNFIQHRRIHTGEKPSGPSS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 43.3 bits (103), Expect = 8e-07
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ KP+ C+ C K F L H TH
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 32.9 bits (76), Expect = 0.005
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F+ K S L H TH + KP +S
Sbjct: 18 KAFSSK--------SYLLVHQQTHAEEKPSGPSS 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.0 bits (102), Expect = 1e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + K + C+ CGK F LR H H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 25.6 bits (57), Expect = 2.3
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNS 61
K+F + S L+ H H K +S
Sbjct: 20 KNFCYI--------SALRIHQRVHMGEKCSGPSS 45
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 43.5 bits (103), Expect = 1e-06
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 41 TSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+S+LK H THT KP+ C+ C + F R+ +L RH TH
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.9 bits (78), Expect = 0.004
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 41 TSNLKTHLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+S + + + + C+ CGK + ++ L+ H TH
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 42.3 bits (100), Expect = 2e-06
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 46 THLLTHTDHKPYECN--SCGKVFRRNCDLRRHALTH 79
+ + T KP+ C CG F R+ +L RH +H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 29.2 bits (66), Expect = 0.11
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 42 SNLKTHLLTHTDHKPYECNS 61
L H +H+ KP +S
Sbjct: 28 DELSRHRRSHSGVKPSGPSS 47
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 41.3 bits (96), Expect = 2e-05
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 1/75 (1%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH-ALTHAVGDVPPESSLAESIGSLKRD 100
S+ K + T + C C + +L H T D E+ K
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 101 NLPPAPSPTGSQSSE 115
+ +
Sbjct: 65 KRSLLEMEGKEDAQK 79
Score = 33.6 bits (76), Expect = 0.012
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+L K +C CG F DL H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 39.1 bits (91), Expect = 3e-05
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
+ + P++C+ C +VF + L +H THA P
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 38.5 bits (90), Expect = 4e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
T KP++C C + F R+ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 38.4 bits (90), Expect = 5e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ PY C CGK F + L H +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 25.3 bits (56), Expect = 2.7
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 8/30 (26%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPY 57
KSFT + +L H + + P
Sbjct: 19 KSFTQR--------GSLAVHQRSCSQSGPS 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.0 bits (88), Expect = 8e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ K C CGK+FR L RH L+H
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 31.1 bits (70), Expect = 0.025
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 41 TSNLKTHLLTHTDHKPYECNSC 62
+L H L+H+ KPY
Sbjct: 25 VYHLNRHKLSHSGEKPYSSGPS 46
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 36.6 bits (84), Expect = 5e-04
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 46 THLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
T + K C C K + L +
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 36.2 bits (83), Expect = 5e-04
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+ + H + +C+ CG +F R L R
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.4 bits (77), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
+P+ C CGK F R+ +L+RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 32.7 bits (74), Expect = 0.005
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTHA 80
+PY C+ C K F RN DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 32.3 bits (74), Expect = 0.007
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
+ + C C + F R L+RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 32.2 bits (73), Expect = 0.026
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVP 85
SC + F +L H VG
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE 54
Score = 31.1 bits (70), Expect = 0.071
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 8/39 (20%)
Query: 21 PGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
KSF K L H+ HT K
Sbjct: 63 EECPREGKSFKAK--------YKLVNHIRVHTGEKSGPS 93
Score = 29.6 bits (66), Expect = 0.19
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 9/47 (19%)
Query: 42 SNLKTHLL-THTDHKPY--------ECNSCGKVFRRNCDLRRHALTH 79
L TH+ H EC GK F+ L H H
Sbjct: 39 HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.0 bits (69), Expect = 0.028
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH--AVGDVPPESS 89
+ KPY C CG F+R + H +H +VG P S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.4 bits (70), Expect = 0.077
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
S+ LL + C C F + L++H
Sbjct: 60 SSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
Score = 31.4 bits (70), Expect = 0.084
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHA 76
+LK H+ C C K F H
Sbjct: 88 VSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.1 bits (64), Expect = 0.13
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 56 PYECNSCGKVFRRNCDLRRHALTHAVGDVPPES 88
EC CGK+FR + L H HA G+ P S
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHA-GESGPSS 43
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.7 bits (64), Expect = 0.16
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 55 KPYEC--NSCGKVFRRNCDLRRHALTH 79
K +EC C K F+R ++R H TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.19
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ K ++C CG++F + L H + H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLH 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.9 bits (62), Expect = 0.24
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 55 KPYECNSCGKVFRRNCDLRRHA 76
K Y C C + F R L RHA
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHA 22
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.36
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 37 TNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGD 83
T + Y+C+ C V DL H +H +
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 27.0 bits (59), Expect = 0.44
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C C + F L+RH H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.5 bits (59), Expect = 0.69
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
K + C+ CGKV+ + LR H H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.69
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
K + C+ CGK F+ L+ H L H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLH 32
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 0.76
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTHAVG 82
+ K ++CN C K F + L +H H G
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRG 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.83
Identities = 40/249 (16%), Positives = 65/249 (26%), Gaps = 89/249 (35%)
Query: 1 ISTPRKNHSNVGNVAKDSVNPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHK--PYE 58
+ P + + ++ N L T+ F + T L L + P +
Sbjct: 20 LLVPTASFFI-ASQLQEQFNKILPEPTEGFAADDEPTTPA--ELVGKFLGYVSSLVEPSK 76
Query: 59 CNSCGKV-------FRRNCDLRR---HALTH------------------------AVGDV 84
+V F L HAL +
Sbjct: 77 VGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 85 P----PESSLAESI--GSLK------------------RDNL----PPAPSPTGSQSSED 116
P S+L ++ G+ + RD L S+E
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTYHVLVGDLIKFSAET 194
Query: 117 I-EIERTPSEERSLEPS--DMLG-RRSRSRTPSPPLRSHSPISIFRRHQSPSP-IGIYRR 171
+ E+ RT + + ++L + S TP PIS P IG+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--------PLIGVI-- 244
Query: 172 HSQSPQPAH 180
Q AH
Sbjct: 245 -----QLAH 248
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring
finger; NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 26.7 bits (59), Expect = 1.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 57 YECNSCGKVFRRNCDLRRHALTH 79
Y C C VF +CD+ H H
Sbjct: 31 YVCAVCQNVFCVDCDVFVHDSLH 53
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 1.2
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 34 NLLTNVLTSNLKTHLLT-HTDHKPYECNSCGKVFRRNCDLRRHAL-THAVGDVPPESSLA 91
N++T LK H+ +C C K F+ L H + H+ E+S
Sbjct: 31 NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEG 90
Query: 92 ESIG 95
G
Sbjct: 91 GESG 94
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.7 bits (61), Expect = 1.6
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 39 VLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
++ H+L + C++C D H
Sbjct: 120 FQKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIH 155
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.5 bits (55), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 57 YECNSCGKVFRRNCDLRRHALTHA 80
Y+C+ C + F+ D RH L H
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHG 33
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 1.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
LK H + + C +CG+ DL+ H
Sbjct: 30 LKLKEHED-YCGARTELCGNCGRNVLVK-DLKTHPEVC 65
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.1 bits (54), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
+PY C+ CGK F + H H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.9 bits (54), Expect = 3.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 57 YECNSCGKVFRRNCDLRRHALTH 79
+ C C K F R+ L H L H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.5 bits (60), Expect = 3.0
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
S H K + +V DLR
Sbjct: 194 SQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 24.7 bits (53), Expect = 3.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C CGK F ++ L H H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.0 bits (59), Expect = 3.9
Identities = 12/112 (10%), Positives = 26/112 (23%)
Query: 81 VGDVPPESSLAESIGSLKRDNLPPAPSPTGSQSSEDIEIERTPSEERSLEPSDMLGRRSR 140
+G + + + P+ S T + S + + P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Query: 141 SRTPSPPLRSHSPISIFRRHQSPSPIGIYRRHSQSPQPAHSSSIPFRHHSPI 192
I + + R+ + P P +S P +
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase,
deubiquitinase, cell cycle, hydrolase; 1.55A
{Saccharomyces cerevisiae} PDB: 3c0r_A
Length = 212
Score = 26.8 bits (59), Expect = 4.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 45 KTHLLTHTDHKPYECNSCGKVFRRNCDLRRHA 76
+T +T +CN+C F ++ RHA
Sbjct: 169 QTGYSFNTHKAQIKCNTCQMTFVGEREVARHA 200
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 24.7 bits (53), Expect = 4.2
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ +P+ C C F + RH H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.5 bits (53), Expect = 4.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 57 YECNSCGKVFRRNCDLRRHALTH 79
+ C C K F R+ L +H H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 4.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 49 LTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + K + C C KVF+ L+ H H
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 25.3 bits (55), Expect = 4.8
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 42 SNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+L HL + +C CG F H
Sbjct: 30 RDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESH 62
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 26.0 bits (56), Expect = 4.8
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 41 TSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRH 75
+ LK + ++K C C + F+ + + RH
Sbjct: 54 SPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRH 88
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 86 PESSLAESIGSLKRDNLPPAPSPTGSQSSEDIEIERTPSEERSLEPSD 133
P L S P P ++ E++E+E + LE +
Sbjct: 278 PPRYLVIKRESGPGIAPGPEPHGLTNKKLEEVELEPELDLDLDLEAEE 325
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel,
gating ring, rossman fold, transport, ION trans; 3.10A
{Homo sapiens}
Length = 798
Score = 26.5 bits (57), Expect = 7.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 165 PIGIYRRHSQSPQPAHSSSIPF 186
GIYR + +
Sbjct: 696 CFGIYRLRDAHLSTPSQCTKRY 717
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 26.0 bits (58), Expect = 8.8
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 13/40 (32%)
Query: 45 KTHLLTHTDH---------KPYECNSCGKVFRRNCDLRRH 75
KT +L+H H + YE +FR L+ H
Sbjct: 21 KTSVLSHALHYGTSVFEGIRAYETAKGPAIFR----LKEH 56
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 26.2 bits (57), Expect = 9.1
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 2/114 (1%)
Query: 72 LRRHALTHAVGDVPPES-SLAESIGSLKRDNLPPAPSPTGSQSSEDIEIERTPSEERSLE 130
R+ + + D P ++ SI R N P +++ E+ + +R
Sbjct: 9 FRKKVMGNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGG 68
Query: 131 PSDMLGRRSRSRTPSPPLRSHSPISIFRRHQSPSPIGIYRRHSQSPQPAHSSSI 184
M R P S + P P S+
Sbjct: 69 VG-MPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSL 121
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 24.4 bits (52), Expect = 9.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 57 YECNSCGKVFRRNCDLRRHALTHAV 81
C CGKVF LR+H H V
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQHGV 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.387
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,806,641
Number of extensions: 149454
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 353
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.5 bits)