RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8702
(194 letters)
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 45.3 bits (108), Expect = 4e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
H+ KPY C CGK F R+ L +H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 23.0 bits (50), Expect = 5.8
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 8/25 (32%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHT 52
K+F+ S L H HT
Sbjct: 15 KAFSRS--------SILVQHQRVHT 31
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 44.7 bits (106), Expect = 8e-08
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTH 79
THT KPY C+ C K FR+ L H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 22.7 bits (49), Expect = 7.4
Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 8/26 (30%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTD 53
K+F K L H + D
Sbjct: 16 KTFRQK--------QLLDMHFKRYHD 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.4 bits (103), Expect = 2e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 50 THTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDV 84
TH+ KPYEC C F ++ ++ H L +V
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 43.2 bits (102), Expect = 2e-07
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
T KP++C C + F R+ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 42.7 bits (100), Expect = 5e-07
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
KSFT K S H+ H +PY C CGK F+ L H H
Sbjct: 10 KSFTHK--------SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.6 bits (71), Expect = 0.006
Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 55 KPYECNSCGKVFRRNCDLRRH 75
K Y C CGK F RH
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRH 21
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 41.3 bits (97), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 47 HLLTHTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ + Y+C+ CGK F + DL +H TH
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 41.1 bits (97), Expect = 1e-06
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KP++C C + F R+ L H TH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 22.6 bits (49), Expect = 7.0
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 8/25 (32%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHT 52
++F+ +L TH+ THT
Sbjct: 11 RNFSRS--------DHLTTHIRTHT 27
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 40.7 bits (96), Expect = 2e-06
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
+ + C C + F R L+RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 23.0 bits (50), Expect = 5.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHK 55
++F + +LK H +HT+ K
Sbjct: 10 RAFARQ--------EHLKRHYRSHTNEK 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 40.3 bits (95), Expect = 3e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY+C CGK F +N L H H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 39.6 bits (93), Expect = 5e-06
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
K + C C K F R+ L +H TH
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 39.4 bits (92), Expect = 6e-06
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 51 HTDHKPYECNSCGKVFRRNCDLRRHALTH 79
+ +P+ C C F + RH H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.1 bits (89), Expect = 2e-05
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 55 KPYECNSCGKVFRRNCDLRRH 75
KPY C SCGK F R L H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGH 24
Score = 30.0 bits (68), Expect = 0.015
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 28 KSFTWKNLLTNVLTSNLKTHL-LTHTDHKPYECN 60
K F+ +L H+ HT +P++C
Sbjct: 13 KGFSRP--------DHLNGHIKQVHTSERPHKCQ 38
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 36.5 bits (85), Expect = 7e-05
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
KP++C C K + R +L+ H +H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 22.7 bits (49), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 8/25 (32%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHT 52
KS++ NLKTHL +HT
Sbjct: 12 KSYSRL--------ENLKTHLRSHT 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 36.5 bits (85), Expect = 7e-05
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 55 KPYECNS--CGKVFRRNCDLRRHALTH 79
+P+ C CGK F R+ +L+RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.0 bits (50), Expect = 4.4
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 8/28 (28%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHK 55
K FT L+ H THT K
Sbjct: 12 KRFTRS--------DELQRHKRTHTGEK 31
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 36.2 bits (84), Expect = 8e-05
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
KP++C CGK F + +LR H H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 35.8 bits (83), Expect = 1e-04
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
+PY C SC + F R+ DL RH H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 35.0 bits (81), Expect = 2e-04
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTH 79
+PY C+ C K F RN DL RH +H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.5 bits (77), Expect = 8e-04
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 28 KSFTWKNLLTNVLTSNLKTHLLTHTDHKPYEC 59
KSF +K +LK H+ H+D + Y C
Sbjct: 11 KSFNFK--------KHLKEHMKLHSDTRDYIC 34
Score = 31.6 bits (72), Expect = 0.005
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 57 YECN--SCGKVFRRNCDLRRHALTH 79
+ C +CGK F L+ H H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 32.6 bits (74), Expect = 0.003
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 42 SNLKTHLLTHTDHKPYECNSC--GKVFRRNCDLRRHALTH 79
++ ++ K +EC K F+R ++R H TH
Sbjct: 5 GSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 31.6 bits (72), Expect = 0.003
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 55 KPYECN--SCGKVFRRNCDLRRHALTHA 80
+PY C C K F ++ +L+ H LTHA
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.9 bits (70), Expect = 0.006
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KP+ C+ CG+ F R+ + +RH H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.6 bits (66), Expect = 0.018
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 59 CNSCGKVFRRNCDLRRHALTH 79
C CGK F + L+RH L H
Sbjct: 5 CAECGKAFVESSKLKRHQLVH 25
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 27.8 bits (61), Expect = 0.10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 57 YECNSCGKVFRRNCDLRRHALTH 79
+ C+ C + FRR +LR H ++H
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSH 27
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 27.7 bits (61), Expect = 0.12
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTHA 80
K C CGK+FR L RH L+H+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHS 29
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 28.0 bits (62), Expect = 0.14
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 57 YECNSCGKVFRRNCDLRRHALTHAV-------GDVPPE 87
C CGKVF LR+H H V D+PP
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPP 44
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.0 bits (59), Expect = 0.28
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRH 75
T KPYECN C K F RH
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRH 24
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 27.1 bits (60), Expect = 0.32
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 52 TDHKPYECNSCGKVFRRNCDLRRHALTH 79
D Y C C VF +CD+ H H
Sbjct: 26 KDQHVYVCAVCQNVFCVDCDVFVHDSLH 53
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 25.2 bits (54), Expect = 0.84
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 56 PYECNSCGKVFRRNCDLRRHAL 77
PY+C+SC + F + DL+ H +
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMI 23
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 25.0 bits (54), Expect = 0.84
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 56 PYECNSCGKVFRRNCDLRRHALTH 79
P++C CGK F R L+ H H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.2 bits (55), Expect = 0.91
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 56 PYECNSCGKVFRRNCDLRRHA 76
PY C C + F R L RHA
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHA 21
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 24.2 bits (52), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 56 PYECNSCGKVFRRNCDLRRH 75
P+EC CGK + R +L H
Sbjct: 1 PFECPKCGKCYFRKENLLEH 20
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 24.3 bits (52), Expect = 2.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 57 YECNSCGKVFRRNCDLRRHA 76
+ C+ CGK F R + RHA
Sbjct: 5 FVCSKCGKTFTRRNTMARHA 24
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 23.8 bits (51), Expect = 2.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
KPY C CG F+R + H +H
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRSH 26
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 23.9 bits (51), Expect = 2.5
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 57 YECN--SCGKVFRRNCDLRRHALTH 79
Y C+ +CGK F+++ L+ H +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 24.6 bits (53), Expect = 2.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 54 HKPYECNSCGKVFRRNC 70
+ + C CG +F C
Sbjct: 22 VRRHHCRQCGNIFCAEC 38
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.6 bits (53), Expect = 3.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 54 HKPYECNSCGKVFRRNCDLRRHALTH 79
++ + C SCG VF + L
Sbjct: 19 NRKHHCRSCGGVFCQEHSSNSIPLPD 44
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 24.5 bits (53), Expect = 4.3
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 57 YECNSCGKVFRRNCDLRR 74
+ C C +VF C LRR
Sbjct: 30 FPCRVCTRVFHDGC-LRR 46
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.0 bits (49), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 62 CGKVFRRNCDLRRHALTH 79
C K+FR N +R+H TH
Sbjct: 9 CTKMFRDNSAMRKHLHTH 26
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
taurus) [TaxId: 9913]}
Length = 98
Score = 24.3 bits (53), Expect = 5.7
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 55 KPYECNSCGKVFRRNCDLRRHALTH 79
+ C SCG ++ L H L H
Sbjct: 78 EAQRCPSCGTHYK----LVPHQLAH 98
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 24.1 bits (52), Expect = 6.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 47 HLLTHTDHKPYECNSCGK 64
H L T + Y C+ C +
Sbjct: 38 HELELTRVQVYTCDKCEE 55
>d3b2ua1 c.10.2.5 (A:312-480) EGF receptor extracellular domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 24.6 bits (53), Expect = 6.6
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 20 NPGLSLYTKSFTWKNLLTNVLTSNLKTHLLTHTDHKPYECNSCGK 64
N L Y + WK L ++ C + G+
Sbjct: 131 NKNLC-YANTINWKKLFGTS-----GQKTKIISNRGENSCKATGQ 169
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein
of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Length = 213
Score = 25.0 bits (54), Expect = 7.0
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 9 SNVGNVAKDSVNPGLSLYTKSFTWKNLLTN 38
+NV +V ++ P ++ W +L+TN
Sbjct: 160 ANVTSVRQEYAIPVGPVFPPGMNWTDLITN 189
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 22.4 bits (48), Expect = 8.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 55 KPYECNSCGKVFR 67
+ Y C+ C + FR
Sbjct: 4 RSYTCSFCKREFR 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.387
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,711
Number of extensions: 30078
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 67
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.4 bits)