BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8704
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 45/59 (76%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AFGAVEAMSDR CI SGGK++V LS+ DL+SCC CG GC GG G AW YWVK GI T
Sbjct: 33 AFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVT 91
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 8 SDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNG 66
S AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P AW +W + G
Sbjct: 90 SSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKG 149
Query: 67 I 67
+
Sbjct: 150 L 150
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P AW +W + G+
Sbjct: 37 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 94
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL-CGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEAMSDR+CI + G+ +V +S++DL++CC + CG GCNGG+P AW +W + G+
Sbjct: 31 AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGL 88
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 94 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 151
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 37 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 94
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 32 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 89
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 33 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 90
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 31 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 88
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
A A AMSDR C GG + V +S+ DL++CC CG GCNGG P AW Y+ G+
Sbjct: 101 AVAAASAMSDRFCTM-GGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGL 156
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
A A AMSDR C GG + V +S+ DL++CC CG GCNGG P AW Y+ G+
Sbjct: 102 AVAAASAMSDRFCTM-GGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGL 157
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
A A AMSDR C GG + V +S+ DL++CC CG GCNGG P AW Y+ G+
Sbjct: 124 AVAAASAMSDRFCTM-GGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGL 179
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVS-CCRLCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI S G+ +V +S++D+++ C CG GCNGGFP AW +W K G+
Sbjct: 31 AFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGL 88
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 32 VRLSSDDLVSCC-RLCGFGCNGGFPGMAWRYWVKNGI 67
V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 39
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGF-PGMAWRYWVKNGI 67
AFGAVEA+SDR+CI S G+ +V +S++D+++CC G P AW +W K G+
Sbjct: 31 AFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGEPSGAWNFWTKKGL 88
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGIN 68
AF AV + I +G K V LS +LV C R GC GG+P A Y KNGI+
Sbjct: 27 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIH 81
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGIN 68
AF AV + I +G K V LS +LV C R GC GG+P A Y KNGI+
Sbjct: 27 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIH 81
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G K V LS +LV C R G GCNGGF A++
Sbjct: 18 NQKQCGSXWAFSATGALEGQMFRKTG--KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQ 75
Query: 61 YWVKNG 66
Y +NG
Sbjct: 76 YVKENG 81
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGIN 68
AF AV + I +G K V LS +LV C R GC GG+P A Y KNGI+
Sbjct: 133 AFSAVATVEGINKIRTG--KLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKNGIH 187
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 125 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 182
Query: 68 NT 69
++
Sbjct: 183 DS 184
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G K V LS +LV C R G GCNGGF A++Y +NG
Sbjct: 27 AFSATGALEGQMFRKTG--KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENG 81
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes
As P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes
As P1 Binding Elements
Length = 222
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 29 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 86
Query: 68 NT 69
++
Sbjct: 87 DS 88
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 28 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 85
Query: 68 NT 69
++
Sbjct: 86 DS 87
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin
S
Length = 217
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 30 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 87
Query: 68 NT 69
++
Sbjct: 88 DS 89
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 28 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 85
Query: 68 NT 69
++
Sbjct: 86 DS 87
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor
Cra- 14009
Length = 217
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 28 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 85
Query: 68 NT 69
++
Sbjct: 86 DS 87
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor
Cra- 14013
Length = 217
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCC--RLCGFGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C + GCNGGF A++Y + N GI
Sbjct: 27 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGI 84
Query: 68 NT 69
++
Sbjct: 85 DS 86
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ S AF AV + + I +G S +L+ C R +GCNGG+P A +
Sbjct: 169 NQGSCGSAWAFSAVSTIESIIKIRTGNLNE--YSEQELLDCDRR-SYGCNGGYPWSALQL 225
Query: 62 WVKNGI---NTY 70
+ GI NTY
Sbjct: 226 VAQYGIHYRNTY 237
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At
2.1 Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin
H
Length = 220
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRY 61
F A+ V IA+G K + L+ LV C + GC GG P A+ Y
Sbjct: 28 TFSTTGALESAVAIATG--KMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEY 77
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease
Ervatamin B: Insight Into The Structural Basis Of Its
Stability And Substrate Specificity
Length = 215
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF AV A+ I +G + + LS +LV C GCNGG+ A++Y
Sbjct: 18 NQKQCGSCWAFSAVAAVESINKIRTG--QLISLSEQELVDC-DTASHGCNGGWMNNAFQY 74
Query: 62 WVKNG 66
+ NG
Sbjct: 75 IITNG 79
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 11 AFGAVEAMSDRVCIASGG 28
AFGAVEA+SDR+CI S G
Sbjct: 31 AFGAVEAISDRICIHSNG 48
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF V + I +G + + LS +L+ C R GC+GG+ + +Y V NG++T
Sbjct: 27 AFSTVATIEGINKIITG--QLISLSEQELLDCERRS-HGCDGGYQTTSLQYVVDNGVHT 82
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ S AF AV + + I +G + S +L+ C R +GCNGG+P A +
Sbjct: 18 NQGSCGSXWAFSAVVTIEGIIKIRTGNLN--QYSEQELLDCDRRS-YGCNGGYPWSALQL 74
Query: 62 WVKNGI---NTY 70
+ GI NTY
Sbjct: 75 VAQYGIHYRNTY 86
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 32 VRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGIN 68
V LS +LV C L +GCN G+ + +Y +NGI+
Sbjct: 46 VELSEQELVDC-DLQSYGCNRGYQSTSLQYVAQNGIH 81
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ S AF AV + + I +G + S +L+ C R +GCNGG+P A +
Sbjct: 18 NQGSCGSXWAFSAVVTIEGIIKIRTGNLN--QYSEQELLDCDRRS-YGCNGGYPWSALQL 74
Query: 62 WVKNGI---NTY 70
+ GI NTY
Sbjct: 75 VAQYGIHYRNTY 86
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ S AF AV + + I +G S +L+ C R +GCNGG+P A +
Sbjct: 18 NQGSCGSXWAFSAVVTIEGIIKIRTGNLNE--YSEQELLDCDRRS-YGCNGGYPWSALQL 74
Query: 62 WVKNGI---NTY 70
+ GI NTY
Sbjct: 75 VAQYGIHYRNTY 86
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ S AF + + I +G + LS +LV C + +GC GG+ + +Y
Sbjct: 18 NQGACGSXWAFSTIATVEGINKIVTG--NLLELSEQELVDCDKHS-YGCKGGYQTTSLQY 74
Query: 62 WVKNGINTYK 71
NG++T K
Sbjct: 75 VANNGVHTSK 84
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFP 55
N+A S +F ++ + R+ I + + LS ++VSC + GC GGFP
Sbjct: 227 NQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQ-GCEGGFP 279
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor
Gly-Phe-Chn2
Length = 164
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGM 57
N+A S +F ++ + R+ I + + LS ++VSC + GC GGFP +
Sbjct: 21 NQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQ-GCEGGFPYL 75
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ S AF + A+ ++ IA+G +S LV C GC+GG+ A+ Y
Sbjct: 133 NQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVP-NALGCSGGWMNDAFTY 191
Query: 62 WVKNG 66
+NG
Sbjct: 192 VAQNG 196
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 30.0 bits (66), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 18 NQGQCGSXWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 75
Query: 61 YWVKNG 66
Y NG
Sbjct: 76 YVQDNG 81
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + + AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 18 NQGQCGASYAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 75
Query: 61 YWVKNG 66
Y NG
Sbjct: 76 YVQDNG 81
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of
Cathepsin L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of
Cathepsin L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 18 NQGQCGSXWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 75
Query: 61 YWVKNG 66
Y NG
Sbjct: 76 YVQDNG 81
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 18 NQGQCGSXWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 75
Query: 61 YWVKNG 66
Y NG
Sbjct: 76 YVQDNG 81
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent
Binding Mode Of A Common Sequence Of Endogenous Thiol
Protease Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design
Of Cathepsin K Inhibitors. Crystal Structures Of Two
Papain Inhibitor Complexes Demonstrate Binding To
S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design
Of Cathepsin K Inhibitors. Crystal Structures Of Two
Papain Inhibitor Complexes Demonstrate Binding To
S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI--- 67
AF AV + + I +G + S +L+ C R +GCNGG+P A + + GI
Sbjct: 27 AFSAVVTIEGIIKIRTGNLN--QYSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHYR 83
Query: 68 NTY 70
NTY
Sbjct: 84 NTY 86
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI--- 67
AF AV + + I +G + S +L+ C R +GCNGG+P A + + GI
Sbjct: 27 AFSAVVTIEGIIKIRTGNLN--QYSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHYR 83
Query: 68 NTY 70
NTY
Sbjct: 84 NTY 86
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGF-GCNGGFPGMAWR 60
++ + S AF + A+ IA+G + LS +LV C R GC+GGF ++
Sbjct: 18 DQGQCGSXWAFSTIAAVEGINKIATG--DLISLSEQELVDCGRTQNTRGCDGGFMTDGFQ 75
Query: 61 YWVKN-GINT 69
+ + N GINT
Sbjct: 76 FIINNGGINT 85
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 114 NQGQCGSXWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 171
Query: 61 YWVKNG 66
Y NG
Sbjct: 172 YVQDNG 177
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
In Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
In Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 18 NQGQCGSAWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 75
Query: 61 YWVKNG 66
Y NG
Sbjct: 76 YVQDNG 81
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 19 NQGQCGSAWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 76
Query: 61 YWVKNG 66
Y NG
Sbjct: 77 YVQDNG 82
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWR 60
N+ + S AF A A+ ++ +G + + LS +LV C G GCNGG A++
Sbjct: 110 NQGQCGSSWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQ 167
Query: 61 YWVKNG 66
Y NG
Sbjct: 168 YVQDNG 173
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI--- 67
AF AV + + I +G S +L+ C R +GCNGG+P A + + GI
Sbjct: 27 AFSAVVTIEGIIKIRTGNLNE--YSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHYR 83
Query: 68 NTY 70
NTY
Sbjct: 84 NTY 86
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGF-GCNGGFPGMAWRYWVKN-GIN 68
AF + A+ IA+G + LS +LV C R GC+GGF +++ + N GIN
Sbjct: 27 AFSTIAAVEGINKIATG--DLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGIN 84
Query: 69 T 69
T
Sbjct: 85 T 85
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 AFGAVEAMSDRVCIAS 26
AFGAVEA+SDR+CI +
Sbjct: 31 AFGAVEAISDRICIHT 46
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y NG
Sbjct: 27 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 81
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y NG
Sbjct: 65 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 119
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y NG
Sbjct: 28 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 82
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y NG
Sbjct: 27 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 81
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y NG
Sbjct: 27 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 81
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFP 55
N+ S +F ++ + R+ I + + LS ++VSC GC+GGFP
Sbjct: 226 NQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYAQ-GCDGGFP 278
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGF-GCNGGFPGMAWRYWVKN-GIN 68
AF A+ + I +G + LS +L+ C R GCNGG+ +++ + N GIN
Sbjct: 27 AFSAIATVEGINKIVTG--VLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGIN 84
Query: 69 T 69
T
Sbjct: 85 T 85
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF V + I +G + LS LV C + GC GG+ A++Y
Sbjct: 18 NQGKCGSCWAFSTVTTVESINQIRTG--NLISLSEQQLVDCSKK-NHGCKGGYFDRAYQY 74
Query: 62 WVKNG 66
+ NG
Sbjct: 75 IIANG 79
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y
Sbjct: 17 NQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQY 73
Query: 62 WVKN-GINT 69
KN GI++
Sbjct: 74 VQKNRGIDS 82
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y
Sbjct: 16 NQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQY 72
Query: 62 WVKN-GINT 69
KN GI++
Sbjct: 73 VQKNRGIDS 81
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y
Sbjct: 20 NQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQY 76
Query: 62 WVKN-GINT 69
KN GI++
Sbjct: 77 VQKNRGIDS 85
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With
7-Methyl- Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With
7-Methyl- Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Symmetric
Diacylaminomethyl Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Propanone
Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Pyrrolidinone
Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Pyrrolidinone
Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin
Sulfate Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective
2-Cyano-Pyrimidine Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y
Sbjct: 18 NQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQY 74
Query: 62 WVKN-GINT 69
KN GI++
Sbjct: 75 VQKNRGIDS 83
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y KN GI++
Sbjct: 126 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSEND-GCGGGYMTNAFQYVQKNRGIDS 182
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 NRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRY 61
N+ + S AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y
Sbjct: 18 NQGQCGSCWAFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQY 74
Query: 62 WVKN-GINT 69
KN GI++
Sbjct: 75 VQKNRGIDS 83
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF V A+ I +G + LS LV C GC GG+ A+++ V NG
Sbjct: 29 AFSTVAAVEGINQIVTG--DLISLSEQQLVDCT-TANHGCRGGWMNPAFQFIVNNG 81
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 46 CGFGCNGGFPGMAWRYWVKNGINTYK 71
CG C G +W+ +VKNG+ T++
Sbjct: 50 CGVNCTGS---CSWKIYVKNGLVTWE 72
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF ++ ++ + I K + LS +LV C +GCNGG A+ ++ G
Sbjct: 43 AFSSIGSVESQYAIRK--NKLITLSEQELVDCS-FKNYGCNGGLINNAFEDMIELG 95
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF ++ ++ + I K + LS +LV C +GCNGG A+ ++ G
Sbjct: 44 AFSSIGSVESQYAIRK--NKLITLSEQELVDC-SFKNYGCNGGLINNAFEDMIELG 96
>pdb|2WMH|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
In Complex With The H-Disaccharide Blood Group Antigen
Length = 581
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 36 SDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYK 71
+D +VS L G N G W++W K+ NT++
Sbjct: 222 TDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFE 257
>pdb|2WMG|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Complex With The Lewisy Pentasaccharide
Blood Group Antigen
Length = 581
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 36 SDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYK 71
+D +VS L G N G W++W K+ NT++
Sbjct: 222 TDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFE 257
>pdb|2WMF|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Its Native Form
Length = 581
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 36 SDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTYK 71
+D +VS L G N G W++W K+ NT++
Sbjct: 222 TDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFE 257
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 43 CRLCGFGCNGGFPGMAWRYWVKNGIN 68
C +GC GGFP A +Y +GI+
Sbjct: 56 CERRSYGCRGGFPLYALQYVANSGIH 81
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 32 VRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
V LS +L+ C GC GG A+ Y NG
Sbjct: 49 VSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNG 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,443,860
Number of Sequences: 62578
Number of extensions: 82558
Number of successful extensions: 204
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 89
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)