RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8704
(74 letters)
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 103 bits (260), Expect = 1e-29
Identities = 41/59 (69%), Positives = 45/59 (76%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AFGAVEAMSDR CI SGGK++V LS+ DL+SCC CG GC GG G AW YWVK GI T
Sbjct: 33 AFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVT 91
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 100 bits (252), Expect = 6e-28
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
A A AMSDR C G + V +S+ DL++CC CG GCNGG P AW Y+ G+ +
Sbjct: 102 AVAAASAMSDRFCTMGGVQD-VHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVS 159
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 96.6 bits (241), Expect = 1e-26
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGINT 69
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+ +
Sbjct: 37 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVS 96
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 97.4 bits (243), Expect = 1e-26
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGINT 69
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+ +
Sbjct: 94 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVS 153
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 88.9 bits (221), Expect = 1e-23
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 11 AFGAVEAMSDRVCIASGGK-KHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
A + AM+DR+ I G LS +++ C C GG W Y ++GI
Sbjct: 68 AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPD 125
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 82.5 bits (204), Expect = 1e-20
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMA-WRYWVKNGINT 69
+F ++ + R+ I + + LS ++VSC + GC GGFP + +Y G+
Sbjct: 236 SFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAGKYAQDFGLVE 294
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 51.0 bits (122), Expect = 1e-09
Identities = 5/61 (8%), Positives = 14/61 (22%), Gaps = 2/61 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRL--CGFGCNGGFPGMAWRYWVKNGIN 68
A A+ + + + ++ +G + K G+
Sbjct: 80 ANALAAAIQFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVC 139
Query: 69 T 69
Sbjct: 140 P 140
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease;
HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X
3ch2_X
Length = 265
Score = 46.9 bits (112), Expect = 4e-08
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKN--GI 67
F + + C+ + ++S+ + +C + C+ G M + +++ +
Sbjct: 36 IFASKYHLETIRCMKGY--EPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIEDYGFL 93
Query: 68 NT 69
Sbjct: 94 PA 95
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 43.8 bits (104), Expect = 6e-07
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y N G++
Sbjct: 123 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 180
Query: 69 T 69
+
Sbjct: 181 S 181
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 43.4 bits (103), Expect = 6e-07
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNGINT 69
+F A+ ++ + G + LS +L+ C G GC+GG+ A+ Y GI +
Sbjct: 141 SFSTTGAVEGQLALQRG--RLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYGIMS 198
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 42.2 bits (100), Expect = 2e-06
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF AV + I +G K V LS +LV C R GC GG+P A Y KNGI+
Sbjct: 133 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIHL 188
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 41.0 bits (97), Expect = 5e-06
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF V A + + L+ +LV C GC+G Y NG+
Sbjct: 36 AFSGVAATESAYLAYRQ--QSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQ 90
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 40.7 bits (96), Expect = 5e-06
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF V ++ I +G V LS +L+ C GC GG A+ Y N G+ T
Sbjct: 30 AFSTVVSVEGINAIRTG--SLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGLIT 87
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 40.7 bits (96), Expect = 7e-06
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKNGINT 69
AF M + + S LV C R G GC GG A++Y + G+ T
Sbjct: 118 AFSTTGTMEGQYMKNER--TSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLET 175
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 40.1 bits (95), Expect = 8e-06
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF AV + I +G K V LS +LV C R GC GG+P A Y KNGI+
Sbjct: 27 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRS-HGCKGGYPPYALEYVAKNGIHL 82
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR;
HET: E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 40.1 bits (95), Expect = 9e-06
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF V + I +G + + LS +L+ C R GC+GG+ + +Y V NG++T
Sbjct: 27 AFSTVATIEGINKIITG--QLISLSEQELLDCERRS-HGCDGGYQTTSLQYVVDNGVHT 82
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 40.3 bits (95), Expect = 1e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y KN GI++
Sbjct: 126 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSEN-DGCGGGYMTNAFQYVQKNRGIDS 182
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3
BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 39.8 bits (94), Expect = 1e-05
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
AF A A+ ++ +G + + LS +LV C G GCNGG A++Y N G++
Sbjct: 27 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 84
Query: 69 T 69
+
Sbjct: 85 S 85
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 39.9 bits (94), Expect = 1e-05
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF V A + + L+ +LV C GC+G Y NG+
Sbjct: 116 AFSGVAATESAYLAYRD--QSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQ 170
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 39.4 bits (93), Expect = 1e-05
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF + A+ I + K V LS +LV C GCNGG A+ + + GI T
Sbjct: 28 AFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITT 85
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 39.4 bits (93), Expect = 2e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF +V A+ ++ +G K + LS +LV C GC GG+ A++Y KN GI++
Sbjct: 27 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSEN-DGCGGGYMTNAFQYVQKNRGIDS 83
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 39.0 bits (92), Expect = 2e-05
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF AV + + I +G + S +L+ C R +GCNGG+P A + + GI+
Sbjct: 27 AFSAVVTIEGIIKIRTG--NLNQYSEQELLDCDRRS-YGCNGGYPWSALQLVAQYGIHY 82
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya}
SCOP: d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 39.0 bits (92), Expect = 2e-05
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
AF + + I +G + LS +LV C + +GC GG+ + +Y NG++T
Sbjct: 27 AFSTIATVEGINKIVTG--NLLELSEQELVDCDKHS-YGCKGGYQTTSLQYVANNGVHT 82
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 38.6 bits (91), Expect = 3e-05
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
F A+ V IA+G K + L+ LV C + GC GG P A+ Y N GI
Sbjct: 28 TFSTTGALESAVAIATG--KMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIM 85
Query: 69 T 69
Sbjct: 86 G 86
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 37.5 bits (88), Expect = 7e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
AF + A+ IA+G + LS +LV C R GC+GGF +++ + N GIN
Sbjct: 27 AFSTIAAVEGINKIATG--DLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGGIN 84
Query: 69 T 69
T
Sbjct: 85 T 85
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 37.4 bits (88), Expect = 9e-05
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINT 69
F +V A+ I +G + + LS +L+ C R +GC GGFP A +Y +GI+
Sbjct: 27 TFSSVAAVEGINKIVTG--QLLSLSEQELLDCERRS-YGCRGGFPLYALQYVANSGIHL 82
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 37.5 bits (88), Expect = 9e-05
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG-FGCNGGFPGMAWRYWVKN-GIN 68
AF A+ C +G K V LS +L+ C R G C+GG A++Y + + GI
Sbjct: 33 AFSTTGALEGAHCAKTG--KLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGGIC 90
Query: 69 T 69
+
Sbjct: 91 S 91
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 37.2 bits (87), Expect = 1e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG--FGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C GCNGGF A++Y + N GI
Sbjct: 125 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 182
Query: 68 NT 69
++
Sbjct: 183 DS 184
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 36.9 bits (86), Expect = 1e-04
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF + A+ ++ IA+G +S LV C GC+GG+ A+ Y +N GI++
Sbjct: 142 AFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAFTYVAQNGGIDS 200
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 36.3 bits (85), Expect = 2e-04
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF V A+ I +G + LS LV C GC GG+ A+++ V N GIN+
Sbjct: 29 AFSTVAAVEGINQIVTG--DLISLSEQQLVDCTT-ANHGCRGGWMNPAFQFIVNNGGINS 85
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET:
O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 36.3 bits (85), Expect = 2e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCG--FGCNGGFPGMAWRYWVKN-GI 67
AF AV A+ ++ + +G K V LS+ +LV C GCNGGF A++Y + N GI
Sbjct: 28 AFSAVGALEAQLKLKTG--KLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGI 85
Query: 68 NT 69
++
Sbjct: 86 DS 87
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 36.0 bits (84), Expect = 3e-04
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF +V ++ + I S +LV C GC GG+ A+ + G+ +
Sbjct: 46 AFSSVGSVESQYAIRKK--ALFLFSEQELVDCSVKN-NGCYGGYITNAFDDMIDLGGLCS 102
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 35.6 bits (83), Expect = 3e-04
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF ++ ++ + I K + LS +LV C +GCNGG A+ ++ GI
Sbjct: 44 AFSSIGSVESQYAIRKN--KLITLSEQELVDCSFKN-YGCNGGLINNAFEDMIELGGICP 100
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic
DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 35.6 bits (83), Expect = 4e-04
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF AV A+ I +G + + LS +LV C GCNGG+ A++Y + N GI+T
Sbjct: 27 AFSAVAAVESINKIRTG--QLISLSEQELVDCDTAS-HGCNGGWMNNAFQYIITNGGIDT 83
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4;
2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 35.3 bits (82), Expect = 5e-04
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF A A+ IA+G V LS +L+ C GC G+ ++ + VK+ GI +
Sbjct: 28 AFSATGAIEAAHAIATG--NLVSLSEQELIDCVDES-EGCYNGWHYQSFEWVVKHGGIAS 84
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 35.1 bits (82), Expect = 6e-04
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF + + + G + LS +L+ C + C GG P A+ G+ T
Sbjct: 27 AFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDK-MDKACMGGLPSNAYSAIKNLGGLET 83
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 34.2 bits (79), Expect = 0.001
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN-GINT 69
AF V + I +G + LS +LV C + GC GG A++Y + N GI+T
Sbjct: 27 AFSTVSTVESINQIRTG--NLISLSEQELVDCDKKN-HGCLGGAFVFAYQYIINNGGIDT 83
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 32.1 bits (74), Expect = 0.006
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN---GI 67
AF A+ + + +A LS LVSC + GC+GG A+ + V+ +
Sbjct: 27 AFSAIGNVECQWFLAGH--PLTNLSEQMLVSCDKTD-SGCSGGLMNNAFEWIVQENNGAV 83
Query: 68 NT 69
T
Sbjct: 84 YT 85
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology,
protein structure initiati midwest center for structural
genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans}
PDB: 3pn8_A* 4f66_A* 4f79_A*
Length = 480
Score = 27.1 bits (61), Expect = 0.38
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 50 CNGGFPGMAWRYWVKNGIN 68
+G +P ++YW + I
Sbjct: 274 VHGFYPEHIFKYWERKAIK 292
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, glycoside
hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus
plantarum}
Length = 481
Score = 27.1 bits (61), Expect = 0.40
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 50 CNGGFPGMAWRYWVKNGIN 68
CNG +P + N
Sbjct: 278 CNGTYPQWLRNRFESEHFN 296
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase;
2.30A {Escherichia coli}
Length = 479
Score = 26.7 bits (60), Expect = 0.53
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 50 CNGGFPGMAWRYWVKNGIN 68
G +P W + G N
Sbjct: 275 LRGYYPSYVLNEWERRGFN 293
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Length = 1247
Score = 25.0 bits (54), Expect = 2.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 33 RLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
R D +V G C G W+ +VKNG+ T+
Sbjct: 39 RWQHDKIVRST--HGVNCTGSCS---WKIYVKNGLVTW 71
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 24.5 bits (54), Expect = 3.7
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 9 DEAFGAVEAMSDRVCIASGGK 29
+EA +DR+ + G+
Sbjct: 200 EEAL----QYADRIAVMKQGR 216
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding,
molybdopterin; HET: MGD; 2.40A {Thermus thermophilus}
PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Length = 765
Score = 24.6 bits (54), Expect = 3.8
Identities = 3/26 (11%), Positives = 4/26 (15%), Gaps = 7/26 (26%)
Query: 41 SCCRLCGFGCNGGFPGMAWRYWVKNG 66
C C + C
Sbjct: 42 QICEGCFWRC-------GIVAHAVGN 60
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 85
Score = 22.7 bits (48), Expect = 9.9
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 21 RVCIASGGKKHVRLSSDDLVSCCRLCG 47
+C+ G+ + C CG
Sbjct: 27 PICLYEQGRDSFEDEGRWRLILCATCG 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.456
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,211,953
Number of extensions: 58313
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 48
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)