RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8704
(74 letters)
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 254
Score = 50.3 bits (119), Expect = 8e-10
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNGI 67
AFGAVEA+SDR+CI + V +S++DL++CC +CG GCNGG+P AW +W + G+
Sbjct: 32 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGL 89
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
[TaxId: 9606]}
Length = 217
Score = 41.5 bits (96), Expect = 1e-06
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN 65
AF AV A+ ++ + +G + + S + GCNGGF A++Y + N
Sbjct: 27 AFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDN 81
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 41.1 bits (95), Expect = 1e-06
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN 65
+F ++ + R+ I + + LS ++VSC + G +A +Y
Sbjct: 30 SFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDF 84
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
[TaxId: 5833]}
Length = 241
Score = 41.1 bits (95), Expect = 2e-06
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGIN 68
AF ++ ++ + I K + LS +LV C G GI
Sbjct: 44 AFSSIGSVESQYAIRKN--KLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGIC 99
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger
rhizome (Zingiber officinale) [TaxId: 94328]}
Length = 216
Score = 39.2 bits (90), Expect = 7e-06
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGI 67
AF V A+ I +G + LS LV C GC GG+ A+++ V NG
Sbjct: 27 AFSTVAAVEGINQIVTG--DLISLSEQQLVDCTT-ANHGCRGGWMNPAFQFIVNNGG 80
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia
coronaria) [TaxId: 52861]}
Length = 215
Score = 38.5 bits (88), Expect = 2e-05
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF AV A+ I +G + + LS +LV C GCNGG+ A++Y + NG
Sbjct: 27 AFSAVAAVESINKIRTG--QLISLSEQELVDCDT-ASHGCNGGWMNNAFQYIITNG 79
>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
9823]}
Length = 228
Score = 37.6 bits (86), Expect = 3e-05
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKN 65
F A+ V IA+G K + L+ LV C + GC GG P A+ Y N
Sbjct: 36 TFSTTGALESAVAIATG--KMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYN 89
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean
(Ricinus communis) [TaxId: 3988]}
Length = 224
Score = 37.7 bits (86), Expect = 3e-05
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF + A+ I + K V LS +LV C GCNGG A+ + + G
Sbjct: 28 AFSTIVAVEGINQIKTN--KLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRG 81
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 214
Score = 37.2 bits (85), Expect = 3e-05
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF + + + G + LS +L+ C + C GG P A+ G
Sbjct: 27 AFSVTGNVEGQWFLNQG--TLLSLSEQELLDCDK-MDKACMGGLPSNAYSAIKNLG 79
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 36.5 bits (83), Expect = 7e-05
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNG 66
AF +V A+ ++ +G K + LS +LV C C GG+ A++Y KN
Sbjct: 27 AFSSVGALEGQLKKKTG--KLLNLSPQNLVDCVSENDG-CGGGYMTNAFQYVQKNR 79
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 36.1 bits (82), Expect = 8e-05
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
AF V + I +G + LS +LV C + GC GG A++Y + NG
Sbjct: 27 AFSTVSTVESINQIRTG--NLISLSEQELVDCDK-KNHGCLGGAFVFAYQYIINNGGIDT 83
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 35.4 bits (80), Expect = 2e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCR-LCGFGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G K V LS +LV C R GCNGGF A++Y +NG
Sbjct: 27 AFSATGALEGQMFRKTG--KLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENG 81
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit
(Actinidia chinensis) [TaxId: 3625]}
Length = 218
Score = 33.4 bits (75), Expect = 0.001
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWVKNG 66
AF A+ + I +G + LS +L+ C R GCNGG+ +++ + NG
Sbjct: 27 AFSAIATVEGINKIVTG--VLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNG 81
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
papaya) [TaxId: 3649]}
Length = 216
Score = 33.1 bits (74), Expect = 0.001
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYW 62
AF AV + I +G K V LS +LV C R G P
Sbjct: 27 AFSAVATVEGINKIRTG--KLVELSEQELVDCERRSHGCKGGYPPYALEYVA 76
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId:
9606]}
Length = 275
Score = 32.0 bits (71), Expect = 0.003
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKNGINTY 70
A + AM+DR+ I G L S V C C GG W Y ++GI
Sbjct: 66 AHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEGGNDLSVWDYAHQHGIPDE 124
Query: 71 KP 72
Sbjct: 125 TC 126
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 218
Score = 31.9 bits (71), Expect = 0.003
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYW 62
AF + + I +G + LS +LV C + G
Sbjct: 27 AFSTIATVEGINKIVTG--NLLELSEQELVDCDKHSYGCKGGYQTTSLQYVA 76
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}
Length = 215
Score = 30.8 bits (68), Expect = 0.009
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN 65
AF A+ + + +A ++ + ++ C GC+GG A+ + V+
Sbjct: 27 AFSAIGNVECQWFLAGHPLTNLS---EQMLVSCDKTDSGCSGGLMNNAFEWIVQE 78
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 212
Score = 30.0 bits (66), Expect = 0.014
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLCGFGCNGGFPGMAWRYWVKN 65
AF AV + + I +G S +L+ C R +GCNGG+P A + +
Sbjct: 27 AFSAVVTIEGIIKIRTG--NLNEYSEQELLDCDR-RSYGCNGGYPWSALQLVAQY 78
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 27.7 bits (60), Expect = 0.12
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 11 AFGAVEAMSDRVCIASGGKKHVRLSSDDLVSCCRLC-GFGCNGGFPGMAWRYWVKNG 66
AF A A+ ++ +G + + LS +LV C GCNGG A++Y NG
Sbjct: 123 AFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 177
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 24.1 bits (52), Expect = 2.3
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVR-LSSDDLVSCCRLCGFGCNGGFPGMAW 59
RA + + A GAV R + + +VR D L G G +A
Sbjct: 191 PARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQ 250
Query: 60 R 60
Sbjct: 251 E 251
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 23.1 bits (48), Expect = 4.4
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 41 SCCRLCGFGCNGGFPGMAWRYWVKNG 66
+ CR CG GC ++G
Sbjct: 6 APCRFCGTGCG-------VMVGTRDG 24
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 23.0 bits (49), Expect = 5.4
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 1 MNRAEMSSDEAFGAVEAMSDRVCIASGGKKHVRLS-SDDLVSCCRLCGFGCNGGFPGMAW 59
N++ + A GAV R + V + L G+G + P +A
Sbjct: 181 ENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLAL 240
Query: 60 R 60
Sbjct: 241 E 241
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 85
Score = 22.2 bits (47), Expect = 6.0
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 21 RVCIASGGKKHVRLSSDDLVSCCRLCG 47
+C+ G+ + C CG
Sbjct: 27 PICLYEQGRDSFEDEGRWRLILCATCG 53
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate
dehydrogenase, large subunit {Desulfovibrio gigas
[TaxId: 879]}
Length = 812
Score = 22.5 bits (47), Expect = 8.8
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 41 SCCRLCGFGCN 51
S C C GC
Sbjct: 15 SVCCYCSVGCG 25
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter
thermophilus [TaxId: 940]}
Length = 80
Score = 21.8 bits (45), Expect = 9.1
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 40 VSCCRLCGFGCNGGFPGMAWRYWVKN 65
++C L + +A +Y +
Sbjct: 11 MACHDLKAKKVGPAYADVAKKYAGRK 36
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
chain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 597
Score = 22.3 bits (46), Expect = 9.9
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 41 SCCRLCGFGCNGGFPGMAWRYWVKNG 66
CR CG GC VK+G
Sbjct: 8 GVCRYCGTGCG-------VLVGVKDG 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.456
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 301,949
Number of extensions: 11396
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 31
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)