Query psy8705
Match_columns 200
No_of_seqs 165 out of 1201
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:08:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 2.9E-55 6.4E-60 384.7 8.7 156 43-200 1-319 (443)
2 PLN00221 tubulin alpha chain; 100.0 2E-43 4.4E-48 323.4 6.8 158 43-200 1-321 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1.2E-42 2.5E-47 318.3 7.8 158 43-200 1-321 (448)
4 cd02188 gamma_tubulin Gamma-tu 100.0 1.2E-41 2.6E-46 310.3 7.0 155 44-200 1-322 (431)
5 PLN00222 tubulin gamma chain; 100.0 7.6E-41 1.6E-45 306.7 7.1 156 43-200 2-328 (454)
6 PTZ00010 tubulin beta chain; P 100.0 2.7E-40 5.8E-45 302.6 6.1 156 43-200 1-319 (445)
7 cd02186 alpha_tubulin The tubu 100.0 2.9E-40 6.3E-45 301.6 6.3 157 44-200 1-320 (434)
8 PLN00220 tubulin beta chain; P 100.0 1.8E-39 3.9E-44 297.3 5.5 156 43-200 1-319 (447)
9 PTZ00387 epsilon tubulin; Prov 100.0 2.7E-39 5.8E-44 297.1 6.5 149 43-200 1-346 (465)
10 cd02187 beta_tubulin The tubul 100.0 2.5E-38 5.4E-43 288.2 6.9 155 44-200 1-318 (425)
11 KOG1376|consensus 100.0 1.5E-38 3.2E-43 278.6 4.9 150 43-200 1-313 (407)
12 KOG1374|consensus 100.0 1.3E-37 2.8E-42 273.9 6.4 156 43-200 2-327 (448)
13 cd02189 delta_tubulin The tubu 100.0 3.1E-34 6.7E-39 262.7 8.3 149 46-200 2-344 (446)
14 cd02190 epsilon_tubulin The tu 100.0 2.3E-33 5E-38 252.3 4.9 131 44-200 1-275 (379)
15 cd06059 Tubulin The tubulin su 99.9 3.2E-28 6.9E-33 219.0 4.1 68 133-200 211-278 (382)
16 cd00286 Tubulin_FtsZ Tubulin/F 99.9 2.3E-22 5E-27 177.3 3.5 68 133-200 210-277 (328)
17 PF00091 Tubulin: Tubulin/FtsZ 99.7 5.9E-18 1.3E-22 141.4 2.1 82 45-132 1-95 (216)
18 KOG1375|consensus 99.7 2.2E-17 4.8E-22 145.6 1.4 63 133-200 183-245 (369)
19 PF03953 Tubulin_C: Tubulin C- 99.6 5.6E-17 1.2E-21 125.1 2.6 59 142-200 1-59 (126)
20 COG5023 Tubulin [Cytoskeleton] 99.1 6.5E-11 1.4E-15 105.4 3.0 35 16-56 1-35 (443)
21 KOG1374|consensus 98.7 1.3E-08 2.9E-13 90.9 2.9 36 15-56 1-36 (448)
22 PLN00222 tubulin gamma chain; 98.6 1.3E-08 2.8E-13 94.1 2.8 30 15-44 1-30 (454)
23 PLN00221 tubulin alpha chain; 98.6 1.3E-08 2.9E-13 93.9 2.6 29 16-44 1-29 (450)
24 PTZ00387 epsilon tubulin; Prov 98.6 1.9E-08 4.1E-13 93.3 2.6 30 16-45 1-30 (465)
25 PTZ00335 tubulin alpha chain; 98.6 2.8E-08 6.1E-13 91.7 2.6 29 16-44 1-29 (448)
26 PLN00220 tubulin beta chain; P 98.4 9.6E-08 2.1E-12 88.1 2.7 29 16-44 1-29 (447)
27 cd02188 gamma_tubulin Gamma-tu 98.4 1E-07 2.3E-12 87.6 2.6 28 17-44 1-28 (431)
28 PTZ00010 tubulin beta chain; P 98.3 2.3E-07 5.1E-12 85.6 2.6 29 16-44 1-29 (445)
29 cd02186 alpha_tubulin The tubu 98.3 2.3E-07 5E-12 85.3 2.5 28 17-44 1-28 (434)
30 KOG1376|consensus 98.3 3.2E-07 6.9E-12 81.8 1.4 29 16-44 1-29 (407)
31 cd02190 epsilon_tubulin The tu 98.2 5.6E-07 1.2E-11 81.5 2.5 27 17-43 1-27 (379)
32 cd02187 beta_tubulin The tubul 98.1 1.1E-06 2.4E-11 80.6 2.6 28 17-44 1-28 (425)
33 cd02189 delta_tubulin The tubu 98.1 1.3E-06 2.9E-11 80.6 2.4 26 19-44 2-27 (446)
34 PF00091 Tubulin: Tubulin/FtsZ 97.9 5.3E-06 1.1E-10 69.3 2.0 27 18-44 1-27 (216)
35 smart00865 Tubulin_C Tubulin/F 97.3 5E-05 1.1E-09 56.4 -0.2 55 133-196 7-63 (120)
36 cd06059 Tubulin The tubulin su 97.3 0.00017 3.6E-09 65.3 2.7 53 45-132 1-60 (382)
37 cd00286 Tubulin_FtsZ Tubulin/F 96.7 0.0012 2.5E-08 58.4 2.6 20 18-37 1-20 (328)
38 cd06060 misato Human Misato sh 96.2 0.0052 1.1E-07 57.7 4.3 48 44-99 1-48 (493)
39 PF10644 Misat_Tub_SegII: Misa 94.5 0.024 5.2E-07 43.1 2.0 22 44-65 1-22 (115)
40 PF10644 Misat_Tub_SegII: Misa 94.0 0.033 7.1E-07 42.3 1.9 20 17-36 1-20 (115)
41 cd06060 misato Human Misato sh 90.9 0.13 2.8E-06 48.5 1.8 22 17-38 1-22 (493)
42 KOG2530|consensus 90.3 0.25 5.4E-06 45.8 3.0 34 43-76 1-34 (483)
43 KOG2530|consensus 86.3 0.38 8.3E-06 44.6 1.6 23 16-38 1-23 (483)
44 smart00864 Tubulin Tubulin/Fts 81.0 0.52 1.1E-05 38.5 0.1 40 93-132 3-52 (192)
45 PF08259 Periviscerokin: Periv 74.8 1.4 3.1E-05 19.8 0.5 9 136-144 3-11 (11)
46 TIGR00253 RNA_bind_YhbY putati 33.5 1.1E+02 0.0025 22.3 4.9 49 21-71 19-69 (95)
47 COG5428 Uncharacterized conser 28.7 14 0.00031 25.6 -0.6 25 40-64 25-49 (69)
48 PRK10343 RNA-binding protein Y 21.4 2.5E+02 0.0054 20.6 4.8 50 21-72 21-72 (97)
49 PF12357 PLD_C: Phospholipase 20.9 60 0.0013 22.9 1.4 22 56-77 18-39 (74)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=2.9e-55 Score=384.69 Aligned_cols=156 Identities=45% Similarity=0.824 Sum_probs=150.4
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||||+||+||||||||++||++||+||||++||.+.+..+ .+++++++||+|++.+||| ||||+|| ++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 89999999999999999999999999999999999877655 3568999999999999999 9999999 89
Q ss_pred CCCccccccccc----ccccCcc---------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----LSKLCFV--------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~gagNNw--------------------------------------------------------- 132 (200)
|+|++||+|+|+ +||||||
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 999999999999 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeeccc
Q psy8705 133 -------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYS 199 (200)
Q Consensus 133 -------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~R 199 (200)
+|++||||||||||+++||+|+++.....+++.|+.|++++||+|+|+|++|||+.|+||++|++||
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 9999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred C
Q psy8705 200 V 200 (200)
Q Consensus 200 g 200 (200)
|
T Consensus 319 G 319 (443)
T COG5023 319 G 319 (443)
T ss_pred c
Confidence 8
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2e-43 Score=323.42 Aligned_cols=158 Identities=68% Similarity=1.190 Sum_probs=144.1
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||||+|||||||||||.+||+++|+||+|+++|++......+..++++++||+|+.+++|+ ||||+|| ++
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 89999999999999999999999999999999998754432222456789999999999887 9999999 67
Q ss_pred CCCccccccccc----ccccCcc---------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----LSKLCFV--------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~gagNNw--------------------------------------------------------- 132 (200)
++++++|+|+++ +||||||
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 788899999999 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence
Q ss_pred -------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeeccc
Q psy8705 133 -------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYS 199 (200)
Q Consensus 133 -------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~R 199 (200)
++.+|||||||+||+++||+|++......++++++.+|++++|+++++|+++||+.|||||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 8999999999999999999999887667778899999999999999999999999999999999999
Q ss_pred C
Q psy8705 200 V 200 (200)
Q Consensus 200 g 200 (200)
|
T Consensus 321 G 321 (450)
T PLN00221 321 G 321 (450)
T ss_pred C
Confidence 8
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.2e-42 Score=318.25 Aligned_cols=158 Identities=66% Similarity=1.147 Sum_probs=144.2
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||||+||+||||||||.+||+++++||+++++|.+......+..++++++||+|+.+++|+ ||||+|| +.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 89999999999999999999999999999999998754332222356789999999999987 9999999 67
Q ss_pred CCCccccccccc----ccccCcc---------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----LSKLCFV--------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~gagNNw--------------------------------------------------------- 132 (200)
++++++|+|+|+ +||||||
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 888899999999 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence
Q ss_pred -------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeeccc
Q psy8705 133 -------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYS 199 (200)
Q Consensus 133 -------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~R 199 (200)
|+.+|||||||+||++++|+|+.......++++++.+|++++|+++|+|++|||+.|+|||+++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 8999999999999999999999887667778999999999999999999999999999999999999
Q ss_pred C
Q psy8705 200 V 200 (200)
Q Consensus 200 g 200 (200)
|
T Consensus 321 G 321 (448)
T PTZ00335 321 G 321 (448)
T ss_pred C
Confidence 8
No 4
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.2e-41 Score=310.31 Aligned_cols=155 Identities=30% Similarity=0.542 Sum_probs=142.0
Q ss_pred cceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---ccC
Q psy8705 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---STG 114 (200)
Q Consensus 44 ~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~g 114 (200)
||||+|||||||||||++||++++.||+++++|.+.+..+ ..++++++||+|+.+++|| ||||+|| +++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 6999999999999999999999999999999998754322 2356789999999999987 9999999 678
Q ss_pred CCccccccccc----c--cccCcc--------------------------------------------------------
Q psy8705 115 NLRSCYLSRES----L--SKLCFV-------------------------------------------------------- 132 (200)
Q Consensus 115 ~~~~lf~p~n~----~--gagNNw-------------------------------------------------------- 132 (200)
+++++|+|+|+ + ||||||
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~ 158 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDR 158 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhH
Confidence 88999999999 4 999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 159 y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t 238 (431)
T cd02188 159 YPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAST 238 (431)
T ss_pred cCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCcc
Confidence
Q ss_pred --------------eeeccccCCCcccccccccccccchh-hhhhccccHHhHHHHhcCCCCceeecCC-CCCceeeeee
Q psy8705 133 --------------VLSTNLVPYPRIHFPLATYAPVISAE-KAYHEQMTVAEITNACFEPANQMVKCDP-RHGKYMACCM 196 (200)
Q Consensus 133 --------------kl~tNLVPfPrLhFl~~S~aPl~~~~-~~~~~~~tv~dl~~~lf~~~n~m~~~~p-~~gkyla~~~ 196 (200)
|+.+|||||||+||++++|+|+.... +...++.++.+|++++|+++|+|++||| ++||||||++
T Consensus 239 ~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~ 318 (431)
T cd02188 239 TTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILN 318 (431)
T ss_pred cceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHH
Confidence 89999999999999999999998876 5667889999999999999999999999 9999999999
Q ss_pred cccC
Q psy8705 197 LYSV 200 (200)
Q Consensus 197 l~Rg 200 (200)
+|||
T Consensus 319 ~~RG 322 (431)
T cd02188 319 IIQG 322 (431)
T ss_pred HHcC
Confidence 9998
No 5
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=7.6e-41 Score=306.68 Aligned_cols=156 Identities=28% Similarity=0.467 Sum_probs=140.2
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||||+|||||||||||.+||+++++||+++++|.+....+ ..++++++||+|+.+++|| ||||+|| +.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999999998744322 2356789999999999987 9999999 67
Q ss_pred CCCccccccccc----c--cccCcc-------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----L--SKLCFV------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~--gagNNw------------------------------------------------------- 132 (200)
++++++|+|+|+ + ||||||
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d 159 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALND 159 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHh
Confidence 788999999999 3 699999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 160 ~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~ 239 (454)
T PLN00222 160 RYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239 (454)
T ss_pred hcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCc
Confidence
Q ss_pred ---------------eeeccccCCCcccccccccccccch-hhhhhccccHHhHHHHhcCCCCceeecCCCC-----Cce
Q psy8705 133 ---------------VLSTNLVPYPRIHFPLATYAPVISA-EKAYHEQMTVAEITNACFEPANQMVKCDPRH-----GKY 191 (200)
Q Consensus 133 ---------------kl~tNLVPfPrLhFl~~S~aPl~~~-~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~-----gky 191 (200)
|+.+|||||||+||++++|+|+... ....++..++.++++++|+++|+|+.|||+. |||
T Consensus 240 T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~ 319 (454)
T PLN00222 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKY 319 (454)
T ss_pred ccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccch
Confidence 9999999999999999999999765 2345688999999999999999999999998 999
Q ss_pred eeeeecccC
Q psy8705 192 MACCMLYSV 200 (200)
Q Consensus 192 la~~~l~Rg 200 (200)
||++++|||
T Consensus 320 la~~~~~RG 328 (454)
T PLN00222 320 ISILNIIQG 328 (454)
T ss_pred HHHHHHHhC
Confidence 999999998
No 6
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.7e-40 Score=302.60 Aligned_cols=156 Identities=30% Similarity=0.569 Sum_probs=143.0
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||||+||+||||||||++||++++.||+++++|++....+. ..+++++||+|+.+++|| |+||+|| +.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 899999999999999999999999999999999987544322 235789999999999887 9999999 67
Q ss_pred CCCccccccccc----ccccCcc---------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----LSKLCFV--------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~gagNNw--------------------------------------------------------- 132 (200)
++++.+|+|+++ +||||||
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 788899999998 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence
Q ss_pred -------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeeccc
Q psy8705 133 -------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYS 199 (200)
Q Consensus 133 -------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~R 199 (200)
++.+||||||++||++++|+|+.......+.++++.+|++++|+++|+|+++||++|||||++++||
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 7999999999999999999999887666778899999999999999999999999999999999999
Q ss_pred C
Q psy8705 200 V 200 (200)
Q Consensus 200 g 200 (200)
|
T Consensus 319 G 319 (445)
T PTZ00010 319 G 319 (445)
T ss_pred C
Confidence 8
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.9e-40 Score=301.55 Aligned_cols=157 Identities=72% Similarity=1.242 Sum_probs=142.7
Q ss_pred cceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---ccC
Q psy8705 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---STG 114 (200)
Q Consensus 44 ~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~g 114 (200)
||||+||+||||||||.+||+++++||+|+++|++......+..++++++||+|+.+++|+ |+||++| +.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 6999999999999999999999999999999998754432223456889999999999887 9999999 667
Q ss_pred CCccccccccc----ccccCcc----------------------------------------------------------
Q psy8705 115 NLRSCYLSRES----LSKLCFV---------------------------------------------------------- 132 (200)
Q Consensus 115 ~~~~lf~p~n~----~gagNNw---------------------------------------------------------- 132 (200)
+++.+|+|+++ +||||||
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 78899999988 7899999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence
Q ss_pred ------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 133 ------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 133 ------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
+|.+||||||++||++++|+|+........+++++.+|++++|+++|+|+.|||+.|+|||+++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 89999999999999999999998876667788999999999999999999999999999999999998
No 8
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.8e-39 Score=297.32 Aligned_cols=156 Identities=29% Similarity=0.581 Sum_probs=143.1
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||||+||+||||||||.+||+++++||+++++|++....+. ..+++++||+|+.+++|+ |+||+|| ++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 899999999999999999999999999999999987554332 346789999999998887 9999999 67
Q ss_pred CCCccccccccc----ccccCcc---------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----LSKLCFV--------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~gagNNw--------------------------------------------------------- 132 (200)
++++.+|+|+++ +||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 889999999999 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence
Q ss_pred -------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeeccc
Q psy8705 133 -------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYS 199 (200)
Q Consensus 133 -------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~R 199 (200)
++++||||||++||++++++|+........+++++.++++++|+++++|++++|++|+|||+++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 8999999999999999999999876666678899999999999999999999999999999999999
Q ss_pred C
Q psy8705 200 V 200 (200)
Q Consensus 200 g 200 (200)
|
T Consensus 319 G 319 (447)
T PLN00220 319 G 319 (447)
T ss_pred C
Confidence 8
No 9
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.7e-39 Score=297.05 Aligned_cols=149 Identities=28% Similarity=0.487 Sum_probs=133.2
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcC-CCCCCCCCCCCCCCCCCCcccccccccC-----CCC--CC------CCCC
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHG-IQPDGQMPSDKTIGAGDDSFNTFFSETG-----ADQ--SC------PLSP 108 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~-i~~~g~~~~~~~~~~~~~~~~~fF~e~~-----~~~--~v------DlEp 108 (200)
|||||+|||||||||||++||+++|+||+ |+++|.+ ++++++||+|.+ +++ |+ ||||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 89999999999999999999999999999 7777753 346789998532 233 66 9999
Q ss_pred CCC---ccCCCccccccccc----ccccCcc-------------------------------------------------
Q psy8705 109 HPL---STGNLRSCYLSRES----LSKLCFV------------------------------------------------- 132 (200)
Q Consensus 109 ~vI---~~g~~~~lf~p~n~----~gagNNw------------------------------------------------- 132 (200)
+|| +.++++++|+|+|+ +||||||
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 999 77889999999999 8999999
Q ss_pred ------------------------------------------------------------------e-------------
Q psy8705 133 ------------------------------------------------------------------V------------- 133 (200)
Q Consensus 133 ------------------------------------------------------------------k------------- 133 (200)
+
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~ 231 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGP 231 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccccc
Confidence 1
Q ss_pred ------------------------------------------------eeccccCCCcccccccccccccchhhhhhccc
Q psy8705 134 ------------------------------------------------LSTNLVPYPRIHFPLATYAPVISAEKAYHEQM 165 (200)
Q Consensus 134 ------------------------------------------------l~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~ 165 (200)
+.+|||||||+||+++|++|+.......++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~ 311 (465)
T PTZ00387 232 QPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPR 311 (465)
T ss_pred cccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccC
Confidence 56799999999999999999988766677889
Q ss_pred cHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 166 TVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 166 tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
++.+|++++|+++++|+.+||+.|+||||++++||
T Consensus 312 s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG 346 (465)
T PTZ00387 312 RLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRG 346 (465)
T ss_pred CHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999998
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.5e-38 Score=288.21 Aligned_cols=155 Identities=30% Similarity=0.598 Sum_probs=140.7
Q ss_pred cceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---ccC
Q psy8705 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---STG 114 (200)
Q Consensus 44 ~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~g 114 (200)
||||+||+||||||||.+||++++.||+++++|.+....+ ...+++++||+|+.+++|+ |+||+|| +.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSD--LQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCcc--ccccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 6999999999999999999999999999999987644332 1246788999999898887 9999999 667
Q ss_pred CCccccccccc----ccccCcc----------------------------------------------------------
Q psy8705 115 NLRSCYLSRES----LSKLCFV---------------------------------------------------------- 132 (200)
Q Consensus 115 ~~~~lf~p~n~----~gagNNw---------------------------------------------------------- 132 (200)
+++.+|+|+++ +||||||
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 78889999999 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence
Q ss_pred ------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 133 ------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 133 ------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
++.+||||||++||++++|+|+........+++++.+|++++|+++++|+++||++|+|||+++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 89999999999999999999998876666788999999999999999999999999999999999998
No 11
>KOG1376|consensus
Probab=100.00 E-value=1.5e-38 Score=278.63 Aligned_cols=150 Identities=71% Similarity=1.211 Sum_probs=140.6
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
|||+|+|||||+|.|||+++|+++|.||||+++|.++...+....++.+++||+++..+|++ |+||. | ++
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 89999999999999999999999999999999999887655444566899999999999887 99999 7 99
Q ss_pred CCCccccccccc----ccccCcc---------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES----LSKLCFV--------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~----~gagNNw--------------------------------------------------------- 132 (200)
|+|+.+|+|+++ ++|+||+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 999999999999 8999998
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence
Q ss_pred -------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeeccc
Q psy8705 133 -------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYS 199 (200)
Q Consensus 133 -------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~R 199 (200)
+++||||||| + |||+.+..+....++++.+++.++|++.|+|++|||++|||||||++||
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 9999999999 2 9999998888889999999999999999999999999999999999999
Q ss_pred C
Q psy8705 200 V 200 (200)
Q Consensus 200 g 200 (200)
|
T Consensus 313 g 313 (407)
T KOG1376|consen 313 G 313 (407)
T ss_pred C
Confidence 8
No 12
>KOG1374|consensus
Probab=100.00 E-value=1.3e-37 Score=273.85 Aligned_cols=156 Identities=28% Similarity=0.457 Sum_probs=135.8
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---cc
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---ST 113 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~ 113 (200)
+|||||+|+||||||||.+||+.+|+||||.++|.+....+ .+.++.++||+|.++++|+ ||||+|| .+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 57999999999999999999999999999999999765543 4567889999999999998 9999999 67
Q ss_pred CCCccccccccc------ccccCcc-------------------------------------------------------
Q psy8705 114 GNLRSCYLSRES------LSKLCFV------------------------------------------------------- 132 (200)
Q Consensus 114 g~~~~lf~p~n~------~gagNNw------------------------------------------------------- 132 (200)
++|+.+|+|+|+ .||||||
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d 159 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND 159 (448)
T ss_pred chhhcccCccceEEecCCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH
Confidence 789999999999 7899999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 160 rypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~s 239 (448)
T KOG1374|consen 160 RYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAS 239 (448)
T ss_pred hchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence
Q ss_pred ---------------eeeccccCCCcccccccccccccchhhhhh--ccccHHhHHHHhcCCCCceeecCC---CCCcee
Q psy8705 133 ---------------VLSTNLVPYPRIHFPLATYAPVISAEKAYH--EQMTVAEITNACFEPANQMVKCDP---RHGKYM 192 (200)
Q Consensus 133 ---------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~--~~~tv~dl~~~lf~~~n~m~~~~p---~~gkyl 192 (200)
.|...|||+|++||++++|.|++......+ ++.++.|.+++++.|+|+|+...+ ....|+
T Consensus 240 t~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~ 319 (448)
T KOG1374|consen 240 TTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYI 319 (448)
T ss_pred cccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchH
Confidence 788999999999999999999998655444 899999999999999999999655 223566
Q ss_pred eeeecccC
Q psy8705 193 ACCMLYSV 200 (200)
Q Consensus 193 a~~~l~Rg 200 (200)
++..+..|
T Consensus 320 si~n~iqg 327 (448)
T KOG1374|consen 320 SILNIIQG 327 (448)
T ss_pred hHHhhhhc
Confidence 66555443
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=3.1e-34 Score=262.72 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=130.9
Q ss_pred eeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---ccCCC
Q psy8705 46 CISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---STGNL 116 (200)
Q Consensus 46 iI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~g~~ 116 (200)
||+|||||||||||++||++|++||+++++|.+. ...+++++||+|..+++|+ ||||+|| +++..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 7999999999999999999999999999888653 1345789999999888887 9999999 55443
Q ss_pred --ccccccccc----ccccCcc----------------------------------------------------------
Q psy8705 117 --RSCYLSRES----LSKLCFV---------------------------------------------------------- 132 (200)
Q Consensus 117 --~~lf~p~n~----~gagNNw---------------------------------------------------------- 132 (200)
+++|+|+++ +||||||
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 468999999 8999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8705 133 -------------------------------------------------------------------------------- 132 (200)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (200)
T Consensus 156 ~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~ 235 (446)
T cd02189 156 PESLLLNIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPS 235 (446)
T ss_pred CccceeeeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHh
Confidence
Q ss_pred -------------------eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhc---CCCCceee-------
Q psy8705 133 -------------------VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACF---EPANQMVK------- 183 (200)
Q Consensus 133 -------------------kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf---~~~n~m~~------- 183 (200)
++.+||||||++||++++++|++.......+++++.+|+++++ .+++.|..
T Consensus 236 r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~ 315 (446)
T cd02189 236 LDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVR 315 (446)
T ss_pred hccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhccccccccccccccc
Confidence 5888999999999999999999887666778899999999877 78888877
Q ss_pred ------------cCCCCCceeeeeecccC
Q psy8705 184 ------------CDPRHGKYMACCMLYSV 200 (200)
Q Consensus 184 ------------~~p~~gkyla~~~l~Rg 200 (200)
++|+.++|||+++++||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~ls~~~i~RG 344 (446)
T cd02189 316 PEGSAASLLSGNKSTHFNKSLANLLILRG 344 (446)
T ss_pred cccccccccccccCCcccceeeeeeeeeC
Confidence 46789999999999998
No 14
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.98 E-value=2.3e-33 Score=252.32 Aligned_cols=131 Identities=27% Similarity=0.507 Sum_probs=119.1
Q ss_pred cceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC---ccCCCcccc
Q psy8705 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSCPLSPHPL---STGNLRSCY 120 (200)
Q Consensus 44 ~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~vDlEp~vI---~~g~~~~lf 120 (200)
||||+||+||||||||++||++++.|| + ....-+||+||+|| +.++++++|
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh-------~-------------------~pR~v~iD~e~~~i~~i~~~~~~~~~ 54 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH-------L-------------------KARAVLIDMEEGVVNEILKGPLRDLF 54 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh-------c-------------------CCcceeccCChhHHHHHhcCcccccc
Confidence 699999999999999999999999999 1 11233459999999 677888999
Q ss_pred ccccc----ccccCcc----------------------------------------------------------------
Q psy8705 121 LSRES----LSKLCFV---------------------------------------------------------------- 132 (200)
Q Consensus 121 ~p~n~----~gagNNw---------------------------------------------------------------- 132 (200)
+|+|+ +||||||
T Consensus 55 ~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~ 134 (379)
T cd02190 55 DETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRF 134 (379)
T ss_pred CcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceE
Confidence 99999 8999999
Q ss_pred -------------------------------------------------------------------------eeecccc
Q psy8705 133 -------------------------------------------------------------------------VLSTNLV 139 (200)
Q Consensus 133 -------------------------------------------------------------------------kl~tNLV 139 (200)
++.+|||
T Consensus 135 ~~~v~P~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLv 214 (379)
T cd02190 135 VTSVYPSADDDVITSPYNSVLALRELIEHADCVLPIENQALVPFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLV 214 (379)
T ss_pred EEeecCCCCCCceecccHHHHHHHHHHHhCCeeEEeccHHHHHHHHHHHHHHhhhcCccceeecccccccchhhhccccc
Confidence 8999999
Q ss_pred CCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 140 PYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 140 PfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
||||+||++++++|+........++.++.||++++|+++++|+.+||++|||||+++++||
T Consensus 215 P~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 215 PFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred cCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 9999999999999998876666788999999999999999999999999999999999998
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.94 E-value=3.2e-28 Score=219.01 Aligned_cols=68 Identities=37% Similarity=0.789 Sum_probs=64.5
Q ss_pred eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 133 VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 133 kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
++.+||||||++||++++++|+.......++..++.++++++|+++++|+.++|+.|+|||+++++||
T Consensus 211 ~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 278 (382)
T cd06059 211 KLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRG 278 (382)
T ss_pred HHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhC
Confidence 89999999999999999999998876666788999999999999999999999999999999999998
No 16
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.85 E-value=2.3e-22 Score=177.28 Aligned_cols=68 Identities=44% Similarity=0.743 Sum_probs=63.2
Q ss_pred eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 133 VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 133 kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
++.+||||||++||++++|+|+.......+.+.++.++++++|+++++++.++++.++|+++++++||
T Consensus 210 ~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG 277 (328)
T cd00286 210 ELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRG 277 (328)
T ss_pred HHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhC
Confidence 77999999999999999999998765566778899999999999999999999999999999999998
No 17
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.69 E-value=5.9e-18 Score=141.39 Aligned_cols=82 Identities=35% Similarity=0.548 Sum_probs=71.0
Q ss_pred ceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC------CCCCCCC---ccCC
Q psy8705 45 ECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSC------PLSPHPL---STGN 115 (200)
Q Consensus 45 EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~v------DlEp~vI---~~g~ 115 (200)
|||+|||||||||||.+||++++.||+++++.. ....+++.++||+|...++|+ |+||++| +.++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 799999999999999999999999999998711 123566789999999998887 9999999 5566
Q ss_pred Cccccccccc----ccccCcc
Q psy8705 116 LRSCYLSRES----LSKLCFV 132 (200)
Q Consensus 116 ~~~lf~p~n~----~gagNNw 132 (200)
.+.+|+++++ +|+||||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~ 95 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNW 95 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSH
T ss_pred ccccccccccccccccccccc
Confidence 6689999998 6999999
No 18
>KOG1375|consensus
Probab=99.65 E-value=2.2e-17 Score=145.56 Aligned_cols=63 Identities=33% Similarity=0.694 Sum_probs=61.0
Q ss_pred eeeccccCCCcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 133 VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 133 kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
++.+||||||||||+.++++|++..+...++.+++.++++++|+.+|+|..|| ||+++.++||
T Consensus 183 kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG 245 (369)
T KOG1375|consen 183 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG 245 (369)
T ss_pred hhhhccCCCcchhhccccccccccccccccccccccccccccccCcchhhhhh-----hhhhHHHhcc
Confidence 88999999999999999999999998888999999999999999999999998 9999999998
No 19
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.64 E-value=5.6e-17 Score=125.13 Aligned_cols=59 Identities=51% Similarity=1.024 Sum_probs=54.6
Q ss_pred CcccccccccccccchhhhhhccccHHhHHHHhcCCCCceeecCCCCCceeeeeecccC
Q psy8705 142 PRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLYSV 200 (200)
Q Consensus 142 PrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~~lf~~~n~m~~~~p~~gkyla~~~l~Rg 200 (200)
|||||+++||||++......+++.++.||++++|+++|+|++|||++||||||+++|||
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG 59 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRG 59 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEE
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhcccc
Confidence 89999999999999998888999999999999999999999999999999999999998
No 20
>COG5023 Tubulin [Cytoskeleton]
Probab=99.07 E-value=6.5e-11 Score=105.37 Aligned_cols=35 Identities=49% Similarity=0.847 Sum_probs=32.8
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhccccceeEEeecCccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYRECISVHIGQAGV 56 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~EiI~iqvGQcGn 56 (200)
|||||+||+||||+|||.+|||+||+||+ ||.+|.
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHG------I~~~G~ 35 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHG------IGPDGT 35 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhC------cCCCCC
Confidence 79999999999999999999999999996 777776
No 21
>KOG1374|consensus
Probab=98.65 E-value=1.3e-08 Score=90.94 Aligned_cols=36 Identities=36% Similarity=0.684 Sum_probs=33.5
Q ss_pred CccceEEEEeCcchhhhHHHHHHHhhccccceeEEeecCccc
Q psy8705 15 HERECISVHIGQAGVQIGNACWELYCSTYRECISVHIGQAGV 56 (200)
Q Consensus 15 ~~~~~~~~~~g~~g~~~g~~~w~~~~~~m~EiI~iqvGQcGn 56 (200)
|+|||+|||+||||+|+|.+||+.+|+||+ ++++|.
T Consensus 1 m~~eIiTlQ~GQCGNQiG~efwk~L~~Ehg------is~~g~ 36 (448)
T KOG1374|consen 1 MPREIITLQLGQCGNQIGFEFWKQLCLEHG------ISPDGI 36 (448)
T ss_pred CCceeEEEeccccccHHHHHHHHHHHHhcC------CCcCCc
Confidence 689999999999999999999999999994 788887
No 22
>PLN00222 tubulin gamma chain; Provisional
Probab=98.65 E-value=1.3e-08 Score=94.14 Aligned_cols=30 Identities=37% Similarity=0.682 Sum_probs=28.5
Q ss_pred CccceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 15 HERECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 15 ~~~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
||||||+||+||||+|||.+||+++|.||+
T Consensus 1 Mm~EiI~i~vGQcGnqiG~~~w~~l~~Eh~ 30 (454)
T PLN00222 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHG 30 (454)
T ss_pred CCccEEEEecCchHHHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999984
No 23
>PLN00221 tubulin alpha chain; Provisional
Probab=98.64 E-value=1.3e-08 Score=93.94 Aligned_cols=29 Identities=72% Similarity=1.426 Sum_probs=28.2
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
|||||+|||||||+|||.+||+++|.||+
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~ 29 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHG 29 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999996
No 24
>PTZ00387 epsilon tubulin; Provisional
Probab=98.60 E-value=1.9e-08 Score=93.26 Aligned_cols=30 Identities=30% Similarity=0.687 Sum_probs=28.7
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhccccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYRE 45 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~E 45 (200)
|||||+|||||||+|||++||+++|.||+.
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~ 30 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKK 30 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCc
Confidence 799999999999999999999999999974
No 25
>PTZ00335 tubulin alpha chain; Provisional
Probab=98.56 E-value=2.8e-08 Score=91.69 Aligned_cols=29 Identities=66% Similarity=1.264 Sum_probs=28.1
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
|||||+|||||||+|||.+||+++|.||+
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~ 29 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHG 29 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999995
No 26
>PLN00220 tubulin beta chain; Provisional
Probab=98.44 E-value=9.6e-08 Score=88.13 Aligned_cols=29 Identities=38% Similarity=0.699 Sum_probs=28.1
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
|||||+||+||||+|||.+||+++|.||+
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~ 29 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHG 29 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999995
No 27
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=98.43 E-value=1e-07 Score=87.58 Aligned_cols=28 Identities=39% Similarity=0.827 Sum_probs=27.0
Q ss_pred cceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 17 RECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 17 ~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
||||+|||||||+|||.+||+++|.||+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~ 28 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHG 28 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999984
No 28
>PTZ00010 tubulin beta chain; Provisional
Probab=98.34 E-value=2.3e-07 Score=85.56 Aligned_cols=29 Identities=34% Similarity=0.633 Sum_probs=27.8
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
||||++||+||||+|+|.+||+++|.||+
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~ 29 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHG 29 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999984
No 29
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=98.33 E-value=2.3e-07 Score=85.33 Aligned_cols=28 Identities=75% Similarity=1.375 Sum_probs=27.0
Q ss_pred cceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 17 RECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 17 ~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
||||+||+||||+|||.+||+++|.||+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~ 28 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHG 28 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999985
No 30
>KOG1376|consensus
Probab=98.25 E-value=3.2e-07 Score=81.79 Aligned_cols=29 Identities=72% Similarity=1.286 Sum_probs=28.0
Q ss_pred ccceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 16 ERECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
|||+|+|||||+|.|+|++|||+||+||+
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhg 29 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHG 29 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhc
Confidence 79999999999999999999999999985
No 31
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=98.23 E-value=5.6e-07 Score=81.49 Aligned_cols=27 Identities=44% Similarity=0.703 Sum_probs=25.7
Q ss_pred cceEEEEeCcchhhhHHHHHHHhhccc
Q psy8705 17 RECISVHIGQAGVQIGNACWELYCSTY 43 (200)
Q Consensus 17 ~~~~~~~~g~~g~~~g~~~w~~~~~~m 43 (200)
|||++|||||||+|||++||+++|.||
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh 27 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH 27 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999884
No 32
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=98.14 E-value=1.1e-06 Score=80.62 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=26.9
Q ss_pred cceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 17 RECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 17 ~~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
|||++||+||||+|||.+||+++|.||+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~ 28 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHG 28 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999985
No 33
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=98.11 E-value=1.3e-06 Score=80.58 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=24.9
Q ss_pred eEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 19 CISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 19 ~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
||+|||||||+|||.+||+++|.||+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~ 27 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEAS 27 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhC
Confidence 79999999999999999999999985
No 34
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=97.90 E-value=5.3e-06 Score=69.27 Aligned_cols=27 Identities=52% Similarity=0.892 Sum_probs=26.0
Q ss_pred ceEEEEeCcchhhhHHHHHHHhhcccc
Q psy8705 18 ECISVHIGQAGVQIGNACWELYCSTYR 44 (200)
Q Consensus 18 ~~~~~~~g~~g~~~g~~~w~~~~~~m~ 44 (200)
||++|+|||||+|||++||+++|.||+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~ 27 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHG 27 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999985
No 35
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=97.30 E-value=5e-05 Score=56.39 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=46.2
Q ss_pred eeeccccCCCcccccccccccccchhhhhhccccHHhHHH--HhcCCCCceeecCCCCCceeeeee
Q psy8705 133 VLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITN--ACFEPANQMVKCDPRHGKYMACCM 196 (200)
Q Consensus 133 kl~tNLVPfPrLhFl~~S~aPl~~~~~~~~~~~tv~dl~~--~lf~~~n~m~~~~p~~gkyla~~~ 196 (200)
++.+||+|+| |++++++|+... .+..+..+++. .+|++++++..+++.. ||+++.
T Consensus 7 dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~ 63 (120)
T smart00865 7 DVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP 63 (120)
T ss_pred HHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC
Confidence 6889999999 999999999862 45678888888 9999999998887764 888763
No 36
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=97.26 E-value=0.00017 Score=65.30 Aligned_cols=53 Identities=36% Similarity=0.495 Sum_probs=45.4
Q ss_pred ceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC---ccCCCccccc
Q psy8705 45 ECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSCPLSPHPL---STGNLRSCYL 121 (200)
Q Consensus 45 EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~vDlEp~vI---~~g~~~~lf~ 121 (200)
|||+|||||||||||++||+++ + +|||||+|| +.++.+++|+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----i------------------------------~iD~e~~~i~~i~~~~~~~~~~ 45 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----I------------------------------LVDLDPRVINEILQGQLSKLFD 45 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----H------------------------------cccCCcchhhhhhcccccccCC
Confidence 7899999999999999999998 2 128899988 5667778899
Q ss_pred cccc----ccccCcc
Q psy8705 122 SRES----LSKLCFV 132 (200)
Q Consensus 122 p~n~----~gagNNw 132 (200)
++++ +|+||||
T Consensus 46 ~~~~~~~~~g~gnn~ 60 (382)
T cd06059 46 PNQLVNGKEGSGNNW 60 (382)
T ss_pred cccEEeccccccccc
Confidence 9999 8999999
No 37
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=96.65 E-value=0.0012 Score=58.42 Aligned_cols=20 Identities=50% Similarity=0.998 Sum_probs=10.8
Q ss_pred ceEEEEeCcchhhhHHHHHH
Q psy8705 18 ECISVHIGQAGVQIGNACWE 37 (200)
Q Consensus 18 ~~~~~~~g~~g~~~g~~~w~ 37 (200)
||++|+|||||+|||++||+
T Consensus 1 eii~i~iG~~G~~i~~~~~~ 20 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWE 20 (328)
T ss_pred CeEEEecCccHhHHHHHHHH
Confidence 45555555555555555555
No 38
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=96.22 E-value=0.0052 Score=57.68 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=35.0
Q ss_pred cceeEEeecCccccchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCcccccccccC
Q psy8705 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETG 99 (200)
Q Consensus 44 ~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~ 99 (200)
|||||||+||+.|.||..||+.-...+...+|+.. ....-+++|+++.
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~--------~~~~~dvl~r~g~ 48 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA--------SELDHDVLYREGR 48 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc--------ccCCCceeeeccc
Confidence 79999999999999999999987666655555421 1123467788744
No 39
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=94.51 E-value=0.024 Score=43.05 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=20.7
Q ss_pred cceeEEeecCccccchHHHHHH
Q psy8705 44 RECISVHIGQAGVQIGNACWEL 65 (200)
Q Consensus 44 ~EiI~iqvGQcGnQIG~~fWe~ 65 (200)
|||||||+|+--|-||.-||..
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~ 22 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI 22 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh
Confidence 6999999999999999999984
No 40
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=94.04 E-value=0.033 Score=42.29 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=19.7
Q ss_pred cceEEEEeCcchhhhHHHHH
Q psy8705 17 RECISVHIGQAGVQIGNACW 36 (200)
Q Consensus 17 ~~~~~~~~g~~g~~~g~~~w 36 (200)
||||||++|+..+.||.-||
T Consensus 1 ~EIiTlq~G~~aN~vgtHfw 20 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFW 20 (115)
T ss_pred CcEEEEEcccccCcHHHhhh
Confidence 79999999999999999999
No 41
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=90.92 E-value=0.13 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.715 Sum_probs=20.8
Q ss_pred cceEEEEeCcchhhhHHHHHHH
Q psy8705 17 RECISVHIGQAGVQIGNACWEL 38 (200)
Q Consensus 17 ~~~~~~~~g~~g~~~g~~~w~~ 38 (200)
|||||||+|++.+.||..||..
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~ 22 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNL 22 (493)
T ss_pred CceEEEeccCccccHhhhhhhh
Confidence 8999999999999999999954
No 42
>KOG2530|consensus
Probab=90.26 E-value=0.25 Score=45.79 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=26.5
Q ss_pred ccceeEEeecCccccchHHHHHHHHhhcCCCCCC
Q psy8705 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDG 76 (200)
Q Consensus 43 m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i~~~g 76 (200)
||||+|||+|+-.|=+|.-||++=-.-.+..+|.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~ 34 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDS 34 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcc
Confidence 7999999999999999999998754444555443
No 43
>KOG2530|consensus
Probab=86.29 E-value=0.38 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.583 Sum_probs=21.4
Q ss_pred ccceEEEEeCcchhhhHHHHHHH
Q psy8705 16 ERECISVHIGQAGVQIGNACWEL 38 (200)
Q Consensus 16 ~~~~~~~~~g~~g~~~g~~~w~~ 38 (200)
||||+||++|+.-+-||.-||-.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~ 23 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQ 23 (483)
T ss_pred CceEEEEEeeccccchhhhhcch
Confidence 79999999999999999999943
No 44
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=80.97 E-value=0.52 Score=38.49 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=28.4
Q ss_pred ccccccCC-CCCC--CCCCCCC---ccCCCccccccccc----ccccCcc
Q psy8705 93 TFFSETGA-DQSC--PLSPHPL---STGNLRSCYLSRES----LSKLCFV 132 (200)
Q Consensus 93 ~fF~e~~~-~~~v--DlEp~vI---~~g~~~~lf~p~n~----~gagNNw 132 (200)
.||.++.. .|.| |+||+++ ..++.+.+|++++. .++||||
T Consensus 3 ~~~g~g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~ 52 (192)
T smart00864 3 KVFGVGGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNW 52 (192)
T ss_pred EEEEeCCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccc
Confidence 46666422 3444 9999988 44566778999666 7899999
No 45
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=74.77 E-value=1.4 Score=19.83 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=7.1
Q ss_pred ccccCCCcc
Q psy8705 136 TNLVPYPRI 144 (200)
Q Consensus 136 tNLVPfPrL 144 (200)
+-|+||||.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 568999984
No 46
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=33.51 E-value=1.1e+02 Score=22.32 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=34.4
Q ss_pred EEEeCcchhhhH--HHHHHHhhccccceeEEeecCccccchHHHHHHHHhhcC
Q psy8705 21 SVHIGQAGVQIG--NACWELYCSTYRECISVHIGQAGVQIGNACWELYCLEHG 71 (200)
Q Consensus 21 ~~~~g~~g~~~g--~~~w~~~~~~m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~ 71 (200)
.++||+.|.-=+ .++= -.+|.+|+|-|.+.+---.--.+..+.++...+
T Consensus 19 ~v~IGK~Glt~~vi~ei~--~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~ 69 (95)
T TIGR00253 19 VVLVGKNGLTEGVIKEIE--QALEHRELIKVKVATEDREDKTLIAEALVKETG 69 (95)
T ss_pred eEEECCCCCCHHHHHHHH--HHHHhCCcEEEEecCCChhHHHHHHHHHHHHHC
Confidence 689999996322 2222 346889999999987554455678888888764
No 47
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=28.73 E-value=14 Score=25.64 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.8
Q ss_pred hccccceeEEeecCccccchHHHHH
Q psy8705 40 CSTYRECISVHIGQAGVQIGNACWE 64 (200)
Q Consensus 40 ~~~m~EiI~iqvGQcGnQIG~~fWe 64 (200)
..|++|.|.|-+++-|+=+|-++|.
T Consensus 25 t~e~~edi~Idide~GkV~GiEi~~ 49 (69)
T COG5428 25 TIELGEDILIDIDENGKVIGIEIWN 49 (69)
T ss_pred hhhcCCcEEEEecCCCcEEEEEEEc
Confidence 4678899999999999999999997
No 48
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=21.37 E-value=2.5e+02 Score=20.64 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=34.2
Q ss_pred EEEeCcchhhhHHHHHHH--hhccccceeEEeecCccccchHHHHHHHHhhcCC
Q psy8705 21 SVHIGQAGVQIGNACWEL--YCSTYRECISVHIGQAGVQIGNACWELYCLEHGI 72 (200)
Q Consensus 21 ~~~~g~~g~~~g~~~w~~--~~~~m~EiI~iqvGQcGnQIG~~fWe~l~~Eh~i 72 (200)
.++||..|.-= .+-+. -.+|.+|+|-|.+.+.--.--.++-+.++...+.
T Consensus 21 vv~IGk~Glt~--~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~a 72 (97)
T PRK10343 21 VVLLGSNGLTE--GVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGA 72 (97)
T ss_pred eEEECCCCCCH--HHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCC
Confidence 57899988742 22222 4578899999999865545556677777776643
No 49
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=20.90 E-value=60 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=15.6
Q ss_pred ccchHHHHHHHHhhcCCCCCCC
Q psy8705 56 VQIGNACWELYCLEHGIQPDGQ 77 (200)
Q Consensus 56 nQIG~~fWe~l~~Eh~i~~~g~ 77 (200)
|+||.+.|++|..|.--+-.|.
T Consensus 18 n~iae~nW~~y~~ee~~dl~GH 39 (74)
T PF12357_consen 18 NEIAEENWKQYASEEVTDLPGH 39 (74)
T ss_pred HHHHHHHHHHhhccccccCCCc
Confidence 7888888988888765433343
Done!