RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8705
(200 letters)
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 149 bits (379), Expect = 2e-43
Identities = 57/65 (87%), Positives = 62/65 (95%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
TNLVPYPRIHFPL +YAP+ISAEKAYHEQ++VAEITNACFEPANQMVKCDPRHGKYMA
Sbjct: 254 FQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 313
Query: 194 CCMLY 198
CC+LY
Sbjct: 314 CCLLY 318
Score = 125 bits (315), Expect = 4e-34
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE IS+HIGQAG+QIGNACWELYCLEHGIQPDGQMPSDKTIG GDD+FNTFFSETG+ +
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 104 CPLS 107
P +
Sbjct: 61 VPRA 64
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 141 bits (358), Expect = 2e-40
Identities = 51/63 (80%), Positives = 59/63 (93%)
Query: 136 TNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACC 195
TNLVPYPRIHF L++YAP+ISAEKAYHEQ++VAEITN+ FEPAN M KCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACC 316
Query: 196 MLY 198
++Y
Sbjct: 317 LMY 319
Score = 128 bits (324), Expect = 3e-35
Identities = 49/64 (76%), Positives = 55/64 (85%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE IS+HIGQAG+Q+GNACWEL+CLEHGIQPDGQMPSDK IG DD+FNTFFSETGA +
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKH 61
Query: 104 CPLS 107
P
Sbjct: 62 VPRC 65
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 139 bits (351), Expect = 3e-39
Identities = 51/63 (80%), Positives = 59/63 (93%)
Query: 136 TNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACC 195
TNLVPYPRIHF L++YAPVISAEKAYHEQ++VAEITN+ FEPA+ M KCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACC 316
Query: 196 MLY 198
++Y
Sbjct: 317 LMY 319
Score = 135 bits (341), Expect = 7e-38
Identities = 52/62 (83%), Positives = 58/62 (93%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+G GDD+FNTFFSETGA +
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKH 61
Query: 104 CP 105
P
Sbjct: 62 VP 63
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 113 bits (285), Expect = 9e-30
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
+ TNLVPYPR+HFPL +Y P S A HE+ +V+E+TN F+P NQMV CDPR G+YMA
Sbjct: 253 IQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMA 312
Query: 194 CCMLY 198
C+L+
Sbjct: 313 VCLLF 317
Score = 90.5 bits (225), Expect = 2e-21
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETG 99
RE I++ +GQ G QIGNA WE CLEHGI PDG + GD+ F+ FF E
Sbjct: 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDE--GDERFDVFFYEAS 55
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 104 bits (263), Expect = 3e-29
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 142 PRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMACCMLY 198
PR+HF + YAP+ S KA H + +V E+T F+P N MV CDPRHGKY++C +L
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLI 57
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 88.2 bits (219), Expect = 5e-21
Identities = 30/68 (44%), Positives = 38/68 (55%)
Query: 131 FVVLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGK 190
LS NLVP+PR+HF + YAP+ S A + VAE+ NQMV CDP HG
Sbjct: 208 LRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGG 267
Query: 191 YMACCMLY 198
Y+A +L
Sbjct: 268 YIAALLLV 275
Score = 39.3 bits (92), Expect = 6e-04
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 45 ECISVHIGQAGVQIGNACWELYCL 68
E +++ +GQAG QIG WE L
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQLVL 24
Score = 38.5 bits (90), Expect = 0.001
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 18 ECISVHIGQAGVQIGNACWELY 39
E +++ +GQAG QIG WE
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL 22
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 79.6 bits (197), Expect = 9e-18
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 113 TGNLRSCYLSRESLSKLCFVVLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITN 172
T +LR L KL TNLVP+PR+HF ++AP+IS + E++ + +I N
Sbjct: 196 TASLRFPGYLNFDLRKLA-----TNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIIN 250
Query: 173 ACFEPANQMVKCDPRHGKYMACCMLY 198
F N CDP G+Y+A +++
Sbjct: 251 ELFNNDNSFFSCDPTKGRYLAAALIF 276
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 18 ECISVHIGQAGVQIGNACWELY 39
E IS+ IGQ G QIGN WEL
Sbjct: 1 EIISIQIGQCGNQIGNKFWELL 22
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 45 ECISVHIGQAGVQIGNACWELY 66
E IS+ IGQ G QIGN WEL
Sbjct: 1 EIISIQIGQCGNQIGNKFWELL 22
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 76.2 bits (188), Expect = 2e-16
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
L+ N+VP+PR+HF + +AP+ S + +TV E+T F+ N M CDPRHG+Y+
Sbjct: 252 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 311
Query: 194 CCMLY 198
++
Sbjct: 312 AAAIF 316
Score = 54.6 bits (132), Expect = 4e-09
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE + + GQ G QIG WE+ EHG+ P G D + N +F+E +
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDS--DLQLERINVYFNEASGGKY 58
Query: 104 CP 105
P
Sbjct: 59 VP 60
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 71.3 bits (175), Expect = 9e-15
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
L+ NLVP+PR+HF + +AP+ S + ++V E+T F+ N M DPRHG+Y+
Sbjct: 253 LAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLT 312
Query: 194 CCMLY 198
L+
Sbjct: 313 ASALF 317
Score = 48.6 bits (116), Expect = 6e-07
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 43 YRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGD---DSFNTFFSETG 99
RE + + GQ G QIG+ WE+ EHGI P G G D + N +++E
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTY-----QGDSDLQLERINVYYNEAT 55
Query: 100 ADQSCP 105
+ P
Sbjct: 56 GGRYVP 61
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 70.2 bits (172), Expect = 2e-14
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
L+ NL+P+PR+HF + +AP+ S + +TV E+T ++ N M DPRHG+Y+
Sbjct: 253 LAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLT 312
Query: 194 CCMLY 198
++
Sbjct: 313 ASAMF 317
Score = 43.3 bits (102), Expect = 3e-05
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE + + GQ G QIG WE+ C EHGI P G D + + N +++E +
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQL--ERINVYYNEASGGRY 59
Query: 104 CP 105
P
Sbjct: 60 VP 61
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 68.2 bits (167), Expect = 1e-13
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
++TNLVPYPR+HF ++ AP++S + + ++ C +P +QMV P GKY+A
Sbjct: 280 ITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLA 339
Query: 194 CCML 197
++
Sbjct: 340 TALI 343
Score = 41.6 bits (98), Expect = 1e-04
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEH-GIQPDGQMPSDKTIGAGDDSFNTFFSETGADQ 102
RE ++V +GQ G Q+G+ W++ EH I + Q DD+ ++FF +
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENV 52
Query: 103 SCP 105
+ P
Sbjct: 53 NRP 55
Score = 31.2 bits (71), Expect = 0.36
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 17 RECISVHIGQAGVQIGNACWEL 38
RE ++V +GQ G Q+G+ W++
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDV 23
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 64.3 bits (157), Expect = 7e-13
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 47 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQSCP 105
I + +G AG IGNA WEL C EHGI PDG + D N FF E+G P
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFH-------ADKINVFFEESGDGVYGP 53
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 62.0 bits (151), Expect = 1e-11
Identities = 19/64 (29%), Positives = 39/64 (60%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
++ NLVP+PR+HF +++ +P+ + ++ + F +Q+++ DP+HG Y+A
Sbjct: 209 ITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLA 268
Query: 194 CCML 197
C +L
Sbjct: 269 CALL 272
Score = 33.4 bits (77), Expect = 0.059
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEH 70
RE I V +GQ G QIG W+L EH
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH 27
Score = 31.1 bits (71), Expect = 0.37
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 17 RECISVHIGQAGVQIGNACWEL 38
RE I V +GQ G QIG W+L
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDL 22
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 55.2 bits (134), Expect = 3e-10
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 129 LCFVVLSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAE--ITNACFEPANQMVKCDP 186
+ F + T +VP F + P +A + AE I++ E +N M
Sbjct: 3 VDFADVKTVMVPMG---FAMMGIGPASGENRA----LEAAELAISSPLLEDSNIMGAKGV 55
Query: 187 RHGKYMACCM 196
+
Sbjct: 56 LV--NITGGP 63
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 56.1 bits (136), Expect = 2e-09
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE I++ +GQ G QIG+ W+ C EHGI PDG + T G D + FF + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHY 58
Query: 104 CP 105
P
Sbjct: 59 VP 60
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 137 NLVPYPRIHFPLATYAPVISAEKA-YHEQMTVAEITNACFEPANQMVKCDP-RHGKYMAC 194
+L+P PR+HF + +Y P+ S + A + TV ++ +P N MV ++G Y++
Sbjct: 257 SLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISI 316
Query: 195 CM 196
Sbjct: 317 LN 318
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 55.6 bits (134), Expect = 2e-09
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE I++ +GQ G QIG W+ CLEHGI DG + T G D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQ--GGDRKDVFFYQADDEHY 60
Query: 104 CP------LSP---HPLSTGNLRSCY 120
P L P + + R+ Y
Sbjct: 61 IPRALLIDLEPRVINGIQNSEYRNLY 86
Score = 33.7 bits (77), Expect = 0.047
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 132 VVLSTNLVPYPRIHFPLATYAPV-ISAEKAYHEQMTVAEITNACFEPANQMVKCDPR--- 187
V L +L+P PR HF + Y P+ + + + TV ++ + N MV R
Sbjct: 254 VGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKE 313
Query: 188 --HGKYMA 193
KY++
Sbjct: 314 ASQAKYIS 321
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and
basal bodies.
Length = 446
Score = 35.4 bits (82), Expect = 0.016
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 46 CISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSE 97
++V +GQ G Q+G+ ++ E D+ D+ FFSE
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSE 47
Score = 33.1 bits (76), Expect = 0.090
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 19 CISVHIGQAGVQIGNACWELYCST 42
++V +GQ G Q+G+ ++
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE 25
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome
partitioning].
Length = 440
Score = 28.6 bits (64), Expect = 2.5
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 89 DSFNTFFSETGADQSCPLSPH-------PLSTGNLRSCYLSRESLSKLCFVVLSTNLVPY 141
S FS T A S +SP S + YLSR+ LS+ + L+ Y
Sbjct: 323 ASDYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQNQW---DRTLIHY 379
>gnl|CDD|132787 cd06877, PX_SNX14, The phosphoinositide binding Phox Homology
domain of Sorting Nexin 14. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions. Sorting nexins (SNXs)
make up the largest group among PX domain containing
proteins. They are involved in regulating membrane
traffic and protein sorting in the endosomal system.
The PX domain of SNXs binds PIs and targets the protein
to PI-enriched membranes. SNXs differ from each other
in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway. SNX14 may
be involved in recruiting other proteins to the
membrane via protein-protein and protein-ligand
interaction. It is expressed in the embryonic nervous
system of mice, and is co-expressed in the motoneurons
and the anterior pituary with Islet-1. SNX14 shows a
similar domain architecture as SNX13, containing an
N-terminal PXA domain, a regulator of G protein
signaling (RGS) domain, a PX domain, and a C-terminal
domain that is conserved in some SNXs.
Length = 119
Score = 26.6 bits (59), Expect = 4.9
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 64 ELYCLE------HGIQPDGQMPSDKTIGAGDDSF 91
E Y LE HG PD +PS + G F
Sbjct: 52 EFYVLESKLTEFHGEFPDAPLPSRRIFGPKSYEF 85
>gnl|CDD|215337 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein.
Length = 351
Score = 27.1 bits (60), Expect = 6.3
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 5 ELDSIPVDMNHERECISVHIGQAGVQIGNACWELYCSTYRECISVHIGQAGVQIGNACWE 64
E D +PV+ E+ ++V Q G ++ A + LY S CIS G G + ++ E
Sbjct: 151 EADHLPVE---EKAQLNVL--QRGSRLVAAGYVLYSSATILCISFGSGTHGFTLDHSTGE 205
Query: 65 LYCLEHGIQ--PDGQMPS 80
I+ GQ+ S
Sbjct: 206 FVLTHPDIKIPERGQIYS 223
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 27.3 bits (61), Expect = 6.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 146 FPLATYAPVISAEKAYHEQMT-VAEITNACFEPA 178
+P+A A ++ E V T A FEP+
Sbjct: 315 YPIAKVAAKLAVGYGLDELKNPVTGTTPASFEPS 348
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.435
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,581,331
Number of extensions: 815271
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 43
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)