RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8705
(200 letters)
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 134 bits (338), Expect = 8e-38
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
TNLVP+P HF A++AP+ A + + ++ F N D + G Y+A
Sbjct: 253 FVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAIDWQQGVYLA 312
Query: 194 CCMLY 198
L+
Sbjct: 313 ASALF 317
Score = 98.3 bits (245), Expect = 2e-24
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE +S+H+GQ G QI ++ W L EHG+ G + + + FF + +
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAA-ANSNMEVFFHKVRDGKY 60
Query: 104 CP 105
P
Sbjct: 61 VP 62
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 134 bits (338), Expect = 2e-37
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
L TNLVP P +HF + +AP+ +++ E++ + E+ + F+ + C P G++++
Sbjct: 259 LLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLS 318
Query: 194 CCMLY 198
+LY
Sbjct: 319 TAVLY 323
Score = 104 bits (260), Expect = 2e-26
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQ-MPSDKTIGAGDDSFNTFFSETGADQ 102
I V IGQAG QI + W+ CLEHGI P SF + E+ +
Sbjct: 4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 63
Query: 103 SCPLS----PHPLSTGNLRSCY 120
P + P N+++
Sbjct: 64 YVPRAIMVDLEPSVIDNVKATS 85
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 132 bits (335), Expect = 4e-37
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
TNLVPYPRIHFPLATYAPVISAEKAYHEQ++VAEITNACFEPANQMVKCDPRHGKYMA
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 314
Query: 194 CCMLY 198
CC+LY
Sbjct: 315 CCLLY 319
Score = 109 bits (274), Expect = 1e-28
Identities = 55/62 (88%), Positives = 58/62 (93%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RECIS+H+GQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIG GDDSFNTFFSETGA +
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 104 CP 105
P
Sbjct: 62 VP 63
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 130 bits (328), Expect = 3e-36
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
L+ N+VP+PR+HF + +AP+ S + +TV E+T F+ N M CDPRHG+Y+
Sbjct: 253 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLT 312
Query: 194 CCMLY 198
++
Sbjct: 313 VATIF 317
Score = 105 bits (264), Expect = 4e-27
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE + + GQ G QIG WE+ EHGI P G D + N +++E ++
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSD--LQLERINVYYNEATGNKY 59
Query: 104 CP 105
P
Sbjct: 60 VP 61
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 118 bits (298), Expect = 1e-31
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 134 LSTNLVPYPRIHFPLATYAPVISAE-KAYHEQMTVAEITNACFEPANQMVKCDPRHGK-- 190
L +L+P PR+HF + Y P+ + + A + TV ++ +P N MV
Sbjct: 256 LIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNH 315
Query: 191 -YMACCMLY 198
Y+A +
Sbjct: 316 CYIAILNII 324
Score = 107 bits (268), Expect = 1e-27
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 44 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
RE I++ +GQ G QIG W+ C EHGI P+ + T G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATE--GTDRKDVFFYQADDEHY 60
Query: 104 CPLS----PHPLSTGNLRS 118
P + P ++ +
Sbjct: 61 IPRAVLLDLEPRVIHSILN 79
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 26.6 bits (58), Expect = 5.0
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 3 KKELDSIPVDMNHERECISVHIGQAGVQIGNACWELYCSTYRECI 47
+K LD ++N+ + +G ++ G C+ELY +C+
Sbjct: 105 QKTLDEHDANVNNLYNKVKRALGSNAMEDGKGCFELYHKCDDQCM 149
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA; 2.50A
{Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 25.8 bits (56), Expect = 7.7
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 3 KKELDSIPVDMNHERECISVHIGQAGVQIGNACWELYCSTYRECI 47
+ +D +MN E + + ++GN C+++Y CI
Sbjct: 105 QHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACI 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.435
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,960,459
Number of extensions: 158232
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 15
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)