RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8705
         (200 letters)



>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score =  109 bits (274), Expect = 6e-31
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
             TNLVPYPR HFPLATYAPVISAEKAYHEQ++VAEITNACFEPANQMVKCDPRHGKYMA
Sbjct: 10  FQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMA 69

Query: 194 CCMLY 198
           CC+LY
Sbjct: 70  CCLLY 74


>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 184

 Score =  104 bits (261), Expect = 5e-29
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
           L+ N+VP+PR+HF +  +AP+ S     +  +TV E+T   F+  N M  CDPRHG+Y+ 
Sbjct: 10  LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 69

Query: 194 CCMLY 198
              ++
Sbjct: 70  VAAVF 74


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score =  105 bits (264), Expect = 5e-29
 Identities = 55/66 (83%), Positives = 59/66 (89%)

Query: 44  RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
           RECIS+H+GQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIG GDDSFNTFFSETGA + 
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 104 CPLSPH 109
            P +  
Sbjct: 62  VPRAVF 67


>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 180

 Score =  102 bits (255), Expect = 3e-28
 Identities = 19/65 (29%), Positives = 38/65 (58%)

Query: 134 LSTNLVPYPRIHFPLATYAPVISAEKAYHEQMTVAEITNACFEPANQMVKCDPRHGKYMA 193
           L TNLVP P +HF +  +AP+   +++  E++ + E+  + F+  +    C P  G++++
Sbjct: 7   LLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLS 66

Query: 194 CCMLY 198
             +LY
Sbjct: 67  TAVLY 71


>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 92.3 bits (229), Expect = 1e-23
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 44  RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGAGDDSFNTFFSETGADQS 103
           RE + +  GQ G QIG   WE+   EHGI P G    D  +    +  N +++E   ++ 
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL--QLERINVYYNEAAGNKY 59

Query: 104 CPLSPH 109
            P +  
Sbjct: 60  VPRAIL 65


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score = 86.2 bits (213), Expect = 2e-21
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 44  RECISVHIGQAGVQIGNACWELYCLEHGIQP-DGQMPSDKTIGAGDDSFNTFFSETGADQ 102
              I V IGQAG QI  + W+  CLEHGI P  GQ            SF +   E+ +  
Sbjct: 2   NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 61

Query: 103 SCP 105
             P
Sbjct: 62  YVP 64


>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 370

 Score = 26.4 bits (57), Expect = 2.3
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 50 HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIG 85
          +I   G Q     + L    +G+  DG+   D   G
Sbjct: 52 YIDDTGRQAAETLFALR--HYGLTWDGKEKYDHFAG 85


>d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida
           [TaxId: 303]}
          Length = 130

 Score = 25.2 bits (54), Expect = 3.4
 Identities = 8/63 (12%), Positives = 16/63 (25%)

Query: 10  PVDMNHERECISVHIGQAGVQIGNACWELYCSTYRECISVHIGQAGVQIGNACWELYCLE 69
              +    + ++  I    +   +    L         +  I  A   I  A W+     
Sbjct: 57  LKSLKQLLDDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKV 116

Query: 70  HGI 72
           H  
Sbjct: 117 HET 119


>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein
           RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 25.1 bits (55), Expect = 4.5
 Identities = 6/17 (35%), Positives = 7/17 (41%)

Query: 115 NLRSCYLSRESLSKLCF 131
            L    LSR  L + C 
Sbjct: 6   ELNRVRLSRHKLERWCH 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 738,800
Number of extensions: 31403
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 14
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)