BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8706
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 37 RTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD--LPSPVEFSTSPISTPTHWKQSI 94
TT+ S + FSS F L+ + + + GYFD YF+ + V FST P ST THWKQ++
Sbjct: 234 HTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTV 293
Query: 95 FLLKTPITLS 104
FLL+ P ++
Sbjct: 294 FLLEKPFSVK 303
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 120 RTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD--LPSPVEFSTSPISTPTHWKQSI 177
TT+ S + FSS F L+ + + + GYFD YF+ + V FST P ST THWKQ++
Sbjct: 234 HTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTV 293
Query: 178 FLLKTP 183
FLL+ P
Sbjct: 294 FLLEKP 299
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 37 RTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD--LPSPVEFSTSPISTPTHWKQSI 94
TT+ S + FSS F L + + GYFD YF+ + V FST P ST THWKQ+I
Sbjct: 215 HTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTI 274
Query: 95 FLLKTP------------ITLSKVKQD 109
FLL+ P IT+ K K+D
Sbjct: 275 FLLEKPFPVKAGEALKGKITVHKNKKD 301
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 120 RTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD--LPSPVEFSTSPISTPTHWKQSI 177
TT+ S + FSS F L + + GYFD YF+ + V FST P ST THWKQ+I
Sbjct: 215 HTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTI 274
Query: 178 FLLKTP 183
FLL+ P
Sbjct: 275 FLLEKP 280
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 38 TTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPS---PVEFSTSPISTPTHWKQSI 94
T S + F S+F L A++ +N +V +FD F P PVEFST P + THWKQ+I
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268
Query: 95 F 95
F
Sbjct: 269 F 269
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 121 TTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPS---PVEFSTSPISTPTHWKQSI 177
T S + F S F L A++ +N +V +FD F P PVEFST P + THWKQ+I
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268
Query: 178 F 178
F
Sbjct: 269 F 269
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 129 FSSPFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLK 181
F+SPFCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++
Sbjct: 249 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYME 302
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 46 FSSSFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLKTPITLS 104
F+S FCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++ +T+
Sbjct: 249 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVK 308
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 129 FSSPFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLK 181
F+SPFCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++
Sbjct: 245 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYME 298
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 46 FSSSFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLKTPITLS 104
F+S FCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++ +T+
Sbjct: 245 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVK 304
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 129 FSSPFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLK 181
F+SPFCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++
Sbjct: 236 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYME 289
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 46 FSSSFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLKTPITLS 104
F+S FCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++ +T+
Sbjct: 236 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVK 295
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 129 FSSPFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLK 181
F+SPFCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++
Sbjct: 239 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYME 292
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 46 FSSSFCLEARQDTRLNCLVGYFDTYF-DLPSPVEFSTSPISTPTHWKQSIFLLKTPITLS 104
F+S FCL+ +++ ++ LV YF+ F FSTSP S THWKQ++F ++ +T+
Sbjct: 239 FTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVK 298
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 75 SPVEFSTSPISTPTHWKQSIFLLKTPITLSKVKQDMD 111
P+ STSP THWKQ++ L P+ +V+QD D
Sbjct: 304 KPLVLSTSPFHPATHWKQALLYLNEPV---QVEQDTD 337
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 158 SPVEFSTSPISTPTHWKQSIFLLKTPI 184
P+ STSP THWKQ++ L P+
Sbjct: 304 KPLVLSTSPFHPATHWKQALLYLNEPV 330
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 37 RTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD------LPSPVEFSTSPISTP-TH 89
R+ +S +N + TRL G+FD F +E +T+P TH
Sbjct: 264 RSNVTSVINM---------EHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTH 314
Query: 90 WKQSIFLLKTPITLSK 105
W Q +F++ PI + +
Sbjct: 315 WGQQVFIMSNPINVEE 330
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 120 RTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD------LPSPVEFSTSPISTP-TH 172
R+ +S +N + TRL G+FD F +E +T+P TH
Sbjct: 264 RSNVTSVINM---------EHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTH 314
Query: 173 WKQSIFLLKTPI 184
W Q +F++ PI
Sbjct: 315 WGQQVFIMSNPI 326
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 34/138 (24%)
Query: 41 SSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLKTP 100
C+ + E R+ FD + + V STSP T W+ L
Sbjct: 269 EDCIPVLKRYAKEGRE----------FDYVINDLTAVPISTSPEEDST-WE--FLRLILD 315
Query: 101 ITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPV 160
+++ +KQD + T +CVN + L Q RL C PV
Sbjct: 316 LSMKVLKQDGKYF--------TQGNCVNLTEALSLYEEQLGRLYC-------------PV 354
Query: 161 EFSTSPISTPTHWKQSIF 178
EFS + P++ + +F
Sbjct: 355 EFSKEIVCVPSYLELWVF 372
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 5 TRLIYSDVQILTLPP 19
TRL YSDV+I TLPP
Sbjct: 562 TRLEYSDVKITTLPP 576
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 5 TRLIYSDVQILTLPP 19
TRL YSDV+I TLPP
Sbjct: 562 TRLEYSDVKITTLPP 576
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 5 TRLIYSDVQILTLPP 19
TRL YSDV+I TLPP
Sbjct: 562 TRLEYSDVKITTLPP 576
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 5 TRLIYSDVQILTLPP 19
TRL YSDV+I TLPP
Sbjct: 562 TRLEYSDVKITTLPP 576
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 38 TTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDL 73
TT+ CV+ E +D + C +G+FD D+
Sbjct: 272 VTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDV 307
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 38 TTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDL 73
TT+ CV+ E +D + C +G+FD D+
Sbjct: 272 VTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDV 307
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 38 TTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDL 73
TT+ CV+ E +D + C +G+FD D+
Sbjct: 272 VTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDV 307
>pdb|3MX3|A Chain A, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
pdb|3MX3|B Chain B, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 490
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 56 QDTRLNCLVGYFDTYFDLPSPV-EFSTSPI--STPTHWKQS--IFLLKTPITLSKVKQDM 110
Q N ++ +T ++L S +F PI + + WK++ F LK LSK + D
Sbjct: 137 QKEVXNFILSDLETAYELFSTAKDFDGDPILGGSISKWKKATTAFQLKVLXHLSKKESDA 196
Query: 111 DFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDT 152
D + AR S + S+ L+ + + N + + +T
Sbjct: 197 DLKVKERFARIVASGSLXESNEDNLQXKYADKANTVYPFHNT 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,700,745
Number of Sequences: 62578
Number of extensions: 166092
Number of successful extensions: 323
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 31
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)