Query psy8706
Match_columns 186
No_of_seqs 260 out of 1095
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:10:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499|consensus 100.0 1.3E-31 2.9E-36 228.0 10.5 133 1-137 196-331 (346)
2 KOG1499|consensus 99.9 5.6E-26 1.2E-30 193.7 6.6 134 51-185 122-298 (346)
3 KOG1500|consensus 99.6 1.2E-16 2.6E-21 136.3 4.5 110 6-118 325-436 (517)
4 PF05185 PRMT5: PRMT5 arginine 99.6 2.6E-15 5.6E-20 134.1 10.9 104 7-114 321-432 (448)
5 KOG1500|consensus 99.4 9.2E-14 2E-18 118.8 4.2 139 39-184 233-419 (517)
6 PF05185 PRMT5: PRMT5 arginine 99.3 1.7E-12 3.6E-17 116.1 6.2 126 57-185 260-420 (448)
7 KOG0822|consensus 97.8 5.4E-05 1.2E-09 68.7 7.4 104 7-113 502-608 (649)
8 PTZ00357 methyltransferase; Pr 96.3 0.036 7.8E-07 52.5 10.2 88 9-98 882-992 (1072)
9 KOG0822|consensus 94.7 0.025 5.4E-07 51.8 2.8 52 132-185 543-597 (649)
10 PTZ00357 methyltransferase; Pr 93.2 0.26 5.6E-06 46.9 6.6 52 130-181 935-992 (1072)
11 KOG1501|consensus 92.5 0.072 1.6E-06 48.1 1.8 81 15-99 228-320 (636)
12 KOG1501|consensus 50.6 46 0.001 30.6 5.9 68 20-98 528-604 (636)
13 PF04823 Herpes_UL49_2: Herpes 32.0 17 0.00037 25.9 0.3 24 158-181 14-37 (96)
14 cd06902 lectin_ERGIC-53_ERGL E 30.9 38 0.00083 27.7 2.2 23 129-151 61-85 (225)
15 PF00116 COX2: Cytochrome C ox 29.0 72 0.0016 23.3 3.2 54 95-148 42-103 (120)
16 PF03712 Cu2_monoox_C: Copper 28.7 45 0.00098 25.6 2.1 63 78-151 67-129 (156)
17 cd06901 lectin_VIP36_VIPL VIP3 22.4 67 0.0015 26.7 2.2 26 128-153 58-86 (248)
No 1
>KOG1499|consensus
Probab=99.97 E-value=1.3e-31 Score=228.04 Aligned_cols=133 Identities=25% Similarity=0.445 Sum_probs=123.0
Q ss_pred CccchhhhhcCceEEecCCCCcCCCCceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEec-CC--CcE
Q psy8706 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD-LP--SPV 77 (186)
Q Consensus 1 Ms~~~~~~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~-~~--~~v 77 (186)
||||++.+.+||+|+.+++++|+++||.++++|++|+ +++|++|+++|++++.|++.+||+++|||+.|+ ++ .++
T Consensus 196 ms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~--~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~ 273 (346)
T KOG1499|consen 196 MSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTV--KIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRL 273 (346)
T ss_pred hhhhhhhhhcccceeccChhHhcccceeeEEeeeeee--eccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcc
Confidence 8999999999999999999999999999999999999 999999999999999999999999999999999 44 789
Q ss_pred EEEecCCCCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEEEe
Q psy8706 78 EFSTSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEA 137 (186)
Q Consensus 78 ~LSTsP~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~~~ 137 (186)
.|||||.+|+||||||+||+++|+.|+.|+.|.|.+.+..+.. ...+|++...+.++.
T Consensus 274 ~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~--~~R~l~~~l~~~~~~ 331 (346)
T KOG1499|consen 274 GFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKK--NNRDLDISLSLNFKG 331 (346)
T ss_pred eeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCC--CCccceEEEEEecCC
Confidence 9999999999999999999999999999999999999998753 566777666555543
No 2
>KOG1499|consensus
Probab=99.92 E-value=5.6e-26 Score=193.70 Aligned_cols=134 Identities=27% Similarity=0.401 Sum_probs=100.5
Q ss_pred EEEeec-CceeeEEEEEEEEEec-------------------CCCcEEEEecCCCCCcccceeEeeecCee---------
Q psy8706 51 CLEARQ-DTRLNCLVGYFDTYFD-------------------LPSPVEFSTSPISTPTHWKQSIFLLKTPI--------- 101 (186)
Q Consensus 51 ~l~~~~-~~~v~g~~~wFd~~F~-------------------~~~~v~LSTsP~~~~THWkQtv~~l~~p~--------- 101 (186)
+|++.+ |.+++.|||||.++-. .|+...|.-.|......-...+-+|++.+
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~ 201 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKK 201 (346)
T ss_pred ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcCccccccccchhhhhh
Confidence 566666 8999999999988422 13455666666544333233333444332
Q ss_pred --------EeecCceeee-e--eeecccccccccccccccCCeEEEeccCCcEeEEEEEEEEEecC-C--CceEEccCCC
Q psy8706 102 --------TLSKVKQDMD-F--LHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDL-P--SPVEFSTSPI 167 (186)
Q Consensus 102 --------~v~~g~~I~g-~--v~~~dl~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~-~--~~v~lsT~P~ 167 (186)
++..++++.. . +...| ++|++.+|++|+++|+++++|++.+|||++||||.|++ + +++.|||||.
T Consensus 202 ~~~~e~lv~vv~~~~l~t~~~~i~~~D-l~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~ 280 (346)
T KOG1499|consen 202 IAIKEPLVDVVDPEQLLTEPCLIKEFD-LYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPS 280 (346)
T ss_pred hhhcccceeccChhHhcccceeeEEee-eeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCC
Confidence 3444555544 2 44444 55899999999999999999999999999999999994 4 7999999999
Q ss_pred CCCCceeeeEEeccCCCC
Q psy8706 168 STPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 168 ~~~THWkQt~~~l~~p~~ 185 (186)
+|+||||||||||++|++
T Consensus 281 ~p~THWKQtVfyl~~p~~ 298 (346)
T KOG1499|consen 281 SPYTHWKQTVFYLENPLT 298 (346)
T ss_pred CCCceeeeEEEEecCccc
Confidence 999999999999999975
No 3
>KOG1500|consensus
Probab=99.64 E-value=1.2e-16 Score=136.30 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=99.1
Q ss_pred hhhhcCceEEecCCCCcCCCCceEEEEecCccCCCCcce-eEeecEEEEeecCceeeEEEEEEEEEec-CCCcEEEEecC
Q psy8706 6 RLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCV-NFSSSFCLEARQDTRLNCLVGYFDTYFD-LPSPVEFSTSP 83 (186)
Q Consensus 6 ~~~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl-~~~~~f~l~~~~~~~v~g~~~wFd~~F~-~~~~v~LSTsP 83 (186)
+.++.+|+||.+|++-++..++. ..+|+..+ +.+|+ .+..++++.+...|++||++.|||+.|+ +--.+.|+|+|
T Consensus 325 ~eYFrQPvVDtFD~RilmA~sv~-h~~dF~~~--kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap 401 (517)
T KOG1500|consen 325 QEYFRQPVVDTFDIRILMAKSVF-HVIDFLNM--KEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAP 401 (517)
T ss_pred hhhhccccccccccceeeccchH-hhhhhhhc--ccchheeecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCC
Confidence 34588899999999988877764 58899999 99999 7999999999999999999999999999 34568899999
Q ss_pred CCCCcccceeEeeecCeeEeecCceeeeeeeeccc
Q psy8706 84 ISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSL 118 (186)
Q Consensus 84 ~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl 118 (186)
.+|.|||.|..+.|..|+-++.|+.+.|++..+.+
T Consensus 402 ~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~ 436 (517)
T KOG1500|consen 402 TAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIAN 436 (517)
T ss_pred CCCcccceeeeeeccCchhhhcCCeeeeeEEEEEc
Confidence 99999999999999999999999999999887664
No 4
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.62 E-value=2.6e-15 Score=134.10 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=87.4
Q ss_pred hhhcCceEEecCCCCcCCCC-ceEEEEecCccCCC---CcceeEeecEEEEeecCceeeEEEEEEEEEecCCCcEEEEec
Q psy8706 7 LIYSDVQILTLPPDTIVTSS-STLTSIDLNSRTTT---SSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTS 82 (186)
Q Consensus 7 ~~~~ep~v~~v~~~~ilt~~-~~i~~~Dl~t~~~~---~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTs 82 (186)
..+..|.|..+.+...|+++ ..+.+++..+. . .++......+++++.++|.+|||++|||+.|. +.|.|||+
T Consensus 321 ~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~--~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly--~~V~LSt~ 396 (448)
T PF05185_consen 321 SSFETPYVVHLSPFELLSDPPQPVFTFDHPNP--DLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLY--GDVVLSTS 396 (448)
T ss_dssp HHHTSSEEE--GGGGBCSCCEEEEEETTTCGG--G-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEE--CSEEEESS
T ss_pred hhcCCcEEEEccchhhhcCCceEEEEeccCCc--cccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEee--CCeeeecC
Confidence 45788999999999999999 88889998887 5 34557888999999999999999999999998 56999999
Q ss_pred CCC----CCcccceeEeeecCeeEeecCceeeeeee
Q psy8706 83 PIS----TPTHWKQSIFLLKTPITLSKVKQDMDFLH 114 (186)
Q Consensus 83 P~~----~~THWkQtv~~l~~p~~v~~g~~I~g~v~ 114 (186)
|.. +.|||+|++|+|++|+.|++|+.|.+.+.
T Consensus 397 P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~ 432 (448)
T PF05185_consen 397 PSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIW 432 (448)
T ss_dssp TTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEE
T ss_pred CCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEE
Confidence 998 89999999999999999999999988753
No 5
>KOG1500|consensus
Probab=99.43 E-value=9.2e-14 Score=118.78 Aligned_cols=139 Identities=24% Similarity=0.322 Sum_probs=95.9
Q ss_pred CCCcceeEeecEEEEeecCceeeEEEEEEEEEec------------CCCcE------EEEecCCCC----------Cccc
Q psy8706 39 TTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD------------LPSPV------EFSTSPIST----------PTHW 90 (186)
Q Consensus 39 ~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~------------~~~~v------~LSTsP~~~----------~THW 90 (186)
|++||+ +|+-.-|.+++.=+||..+--. .++.. .+-.+|++. ...|
T Consensus 233 GKiEdi------eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFW 306 (517)
T KOG1500|consen 233 GKIEDI------ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFW 306 (517)
T ss_pred Cccccc------cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhh
Confidence 577765 3444446778888887765322 22222 344578754 6679
Q ss_pred ceeEeeec---------------Cee--EeecCceeeee-eeecccccccccccc-cccCCeEEEeccCCcEeEEEEEEE
Q psy8706 91 KQSIFLLK---------------TPI--TLSKVKQDMDF-LHSKSLARTTTSSCV-NFSSPFCLEARQDTRLNCLVGYFD 151 (186)
Q Consensus 91 kQtv~~l~---------------~p~--~v~~g~~I~g~-v~~~dl~~~~~~~dl-~~~~~f~~~~~~~~~~~g~~~wFd 151 (186)
.|.-||=- .|+ .....-.+... .++.+.+. .+.+|| .+..|++|.+...|.+||++.|||
T Consensus 307 yQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv~h~~dF~~-~kEedlh~i~iPlkF~~~~~g~iHGLAfWFD 385 (517)
T KOG1500|consen 307 YQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSVFHVIDFLN-MKEEDLHEIDIPLKFHALQCGRIHGLAFWFD 385 (517)
T ss_pred hhhccccccchhhhhhhhhhhhccccccccccceeeccchHhhhhhhh-cccchheeecccceehhhhhcceeeeeeEEE
Confidence 88877632 222 00111111122 23444443 467888 699999999999999999999999
Q ss_pred EEecCC-CceEEccCCCCCCCceeeeEEeccCCC
Q psy8706 152 TYFDLP-SPVEFSTSPISTPTHWKQSIFLLKTPI 184 (186)
Q Consensus 152 ~~F~~~-~~v~lsT~P~~~~THWkQt~~~l~~p~ 184 (186)
|.|.|. ..+.|||+|.+|.|||.|.+++|..||
T Consensus 386 V~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi 419 (517)
T KOG1500|consen 386 VLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPI 419 (517)
T ss_pred EEeccceEEEccCCCCCCCcccceeeeeeccCch
Confidence 999974 478899999999999999999999997
No 6
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.33 E-value=1.7e-12 Score=116.13 Aligned_cols=126 Identities=27% Similarity=0.343 Sum_probs=84.1
Q ss_pred CceeeEEEEEEEEEec-------------------CCCcEEEEecCCCCCcccceeE-----eeecCee--EeecCceee
Q psy8706 57 DTRLNCLVGYFDTYFD-------------------LPSPVEFSTSPISTPTHWKQSI-----FLLKTPI--TLSKVKQDM 110 (186)
Q Consensus 57 ~~~v~g~~~wFd~~F~-------------------~~~~v~LSTsP~~~~THWkQtv-----~~l~~p~--~v~~g~~I~ 110 (186)
|.+|++++|.|-. .+ -|+...+..+|.+.+..|.+.. ..++.|+ .+.+...+.
T Consensus 260 DIIVSElLGsfg~-nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~~~~~~e~pyvv~~~~~~~Ls 338 (448)
T PF05185_consen 260 DIIVSELLGSFGD-NELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWWNPSSFETPYVVHLSPFELLS 338 (448)
T ss_dssp EEEEE---BTTBT-TTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHHGHHHHTSSEEE--GGGGBCS
T ss_pred eEEEEeccCCccc-cccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhcchhhcCCcEEEEccchhhhc
Confidence 6789999997643 11 1345566677876666666543 2355665 345555555
Q ss_pred ee-eeeccccc-ccc---cccccccCCeEEEeccCCcEeEEEEEEEEEecCCCceEEccCCCC----CCCceeeeEEecc
Q psy8706 111 DF-LHSKSLAR-TTT---SSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIS----TPTHWKQSIFLLK 181 (186)
Q Consensus 111 g~-v~~~dl~~-~~~---~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT~P~~----~~THWkQt~~~l~ 181 (186)
.. ..+....+ +.+ .++.+....++|+++++|.+|||++|||+.|.+. |.|||+|.. +.|||+|++|+|+
T Consensus 339 ~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~--V~LSt~P~~~~s~~~tsW~q~~fpL~ 416 (448)
T PF05185_consen 339 DPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGD--VVLSTSPSSAHSPPMTSWFQIFFPLE 416 (448)
T ss_dssp CCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECS--EEEESSTTS---TT--TTEEEEEEEE
T ss_pred CCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCC--eeeecCCCcCCCCCCCeEeEEEEEec
Confidence 54 33333311 112 4566789999999999999999999999999754 999999998 8999999999999
Q ss_pred CCCC
Q psy8706 182 TPIG 185 (186)
Q Consensus 182 ~p~~ 185 (186)
+|+.
T Consensus 417 ~Pl~ 420 (448)
T PF05185_consen 417 EPLY 420 (448)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 9974
No 7
>KOG0822|consensus
Probab=97.84 E-value=5.4e-05 Score=68.67 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=79.1
Q ss_pred hhhcCceEEecCCCCcCCCCceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEecCCCcEEEEecCCCC
Q psy8706 7 LIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIST 86 (186)
Q Consensus 7 ~~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTsP~~~ 86 (186)
.++..|+|-.+.+=..|+++..+++|.--....+++. +-.+..++++.++|.+|||+||||+..- ..+.||+-|...
T Consensus 502 ~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N-~R~~s~eF~~~~~~~lHGFaGYFd~~LY--kdI~LSI~P~T~ 578 (649)
T KOG0822|consen 502 NAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDN-SRSKSVEFKVKSNGVLHGFAGYFDAVLY--KDIFLSIEPNTH 578 (649)
T ss_pred cccccceEEEecceeecCCCCceeEEecCCccccccc-ccceeEEEecCCCceEeecchhhhhhhh--heeeEeeccCCC
Confidence 3577799999999899999999988754332001111 1122346777899999999999999776 679999988532
Q ss_pred ---CcccceeEeeecCeeEeecCceeeeee
Q psy8706 87 ---PTHWKQSIFLLKTPITLSKVKQDMDFL 113 (186)
Q Consensus 87 ---~THWkQtv~~l~~p~~v~~g~~I~g~v 113 (186)
-..|--.+|.+++|+.|.+|++|+..+
T Consensus 579 TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~ 608 (649)
T KOG0822|consen 579 TPGMFSWFPIFFPLKQPITVREGSTLSVHF 608 (649)
T ss_pred CCCceeeeeeeeeccCceEeCCCCeEEEEE
Confidence 456999999999999999999998753
No 8
>PTZ00357 methyltransferase; Provisional
Probab=96.34 E-value=0.036 Score=52.46 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=61.0
Q ss_pred hcCceEEecCCCCcCCCCceEEEEecCccCCCCc-----------------ceeEeecEEEEeecCceeeEEEEEEEEEe
Q psy8706 9 YSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSS-----------------CVNFSSSFCLEARQDTRLNCLVGYFDTYF 71 (186)
Q Consensus 9 ~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~-----------------dl~~~~~f~l~~~~~~~v~g~~~wFd~~F 71 (186)
+..++|-.+..-..|+.|..+++|.--+. ... +.+-.+...+++..++.+|||+|||++..
T Consensus 882 fet~YVV~L~s~~~La~PQPcFTFeHPn~--~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvL 959 (1072)
T PTZ00357 882 NHTLLVTNLSRAVTLAPPQPCWTFEHRFH--GGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVL 959 (1072)
T ss_pred cccceEEEecceeecCCCcceeEEECCCc--ccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEe
Confidence 44578888888778889998888876443 211 11223456678889999999999999977
Q ss_pred cCC---CcEEEEecCCCCC---cccceeEeeec
Q psy8706 72 DLP---SPVEFSTSPISTP---THWKQSIFLLK 98 (186)
Q Consensus 72 ~~~---~~v~LSTsP~~~~---THWkQtv~~l~ 98 (186)
-.+ ..+.|||.|.... --|-...|.|+
T Consensus 960 YkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLe 992 (1072)
T PTZ00357 960 YQSATAPATIIATAPVERTEDMYSWFPCVFALE 992 (1072)
T ss_pred ecCCCccceEeecCCCCCCCCccceeeeEEecC
Confidence 632 2378999996431 23777777665
No 9
>KOG0822|consensus
Probab=94.66 E-value=0.025 Score=51.83 Aligned_cols=52 Identities=25% Similarity=0.442 Sum_probs=41.4
Q ss_pred CeEEEeccCCcEeEEEEEEEEEecCCCceEEccCCCCC---CCceeeeEEeccCCCC
Q psy8706 132 PFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIST---PTHWKQSIFLLKTPIG 185 (186)
Q Consensus 132 ~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT~P~~~---~THWkQt~~~l~~p~~ 185 (186)
..+|+++++|.+|||++|||...- +-|.||+-|..- -+-|-.-+|.|++|+.
T Consensus 543 s~eF~~~~~~~lHGFaGYFd~~LY--kdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~ 597 (649)
T KOG0822|consen 543 SVEFKVKSNGVLHGFAGYFDAVLY--KDIFLSIEPNTHTPGMFSWFPIFFPLKQPIT 597 (649)
T ss_pred eEEEecCCCceEeecchhhhhhhh--heeeEeeccCCCCCCceeeeeeeeeccCceE
Confidence 457888999999999999997654 458899988522 3449999999999974
No 10
>PTZ00357 methyltransferase; Provisional
Probab=93.22 E-value=0.26 Score=46.93 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=39.8
Q ss_pred cCCeEEEeccCCcEeEEEEEEEEEecCC---CceEEccCCCCCCC---ceeeeEEecc
Q psy8706 130 SSPFCLEARQDTRLNCLVGYFDTYFDLP---SPVEFSTSPISTPT---HWKQSIFLLK 181 (186)
Q Consensus 130 ~~~f~~~~~~~~~~~g~~~wFd~~F~~~---~~v~lsT~P~~~~T---HWkQt~~~l~ 181 (186)
.....|++..++.+|||++|||...-.. ..|.|||.|..... -|-...|.|+
T Consensus 935 ya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLe 992 (1072)
T PTZ00357 935 AASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALE 992 (1072)
T ss_pred eEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecC
Confidence 3456788889999999999999876533 35889999964322 2998888887
No 11
>KOG1501|consensus
Probab=92.48 E-value=0.072 Score=48.07 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=58.3
Q ss_pred EecCCC-CcCCCCceEEEEecCccCCCCcceeEeecE--EEEeecCceeeEEEEEEEEEecCCCcEEEEecCCCC-----
Q psy8706 15 LTLPPD-TIVTSSSTLTSIDLNSRTTTSSCVNFSSSF--CLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIST----- 86 (186)
Q Consensus 15 ~~v~~~-~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f--~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTsP~~~----- 86 (186)
+..+.+ .+|+++-.++.+|+..- ++.++...+ ...+..+|++....+|+|+.|+.....-+..+|...
T Consensus 228 ~~~~~ef~~Ls~~~~~F~~df~~~----~~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~ 303 (636)
T KOG1501|consen 228 DAIEKEFKLLSSEGTIFYSDFPRW----IDSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIG 303 (636)
T ss_pred hcchhhheeecCcceeEEeecchh----hhcchhhhhhcCcccccccchhheeeeeeeeeccCcceEEEecceecCCChH
Confidence 333443 47889999999998633 222222222 233456899999999999999966777888888755
Q ss_pred ----CcccceeEeeecC
Q psy8706 87 ----PTHWKQSIFLLKT 99 (186)
Q Consensus 87 ----~THWkQtv~~l~~ 99 (186)
..||.|+++|.++
T Consensus 304 ~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 304 NSVFGLLWEQACPYPKE 320 (636)
T ss_pred HHHHHHHHHHhcCCChh
Confidence 5689999999984
No 12
>KOG1501|consensus
Probab=50.63 E-value=46 Score=30.61 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=47.6
Q ss_pred CCcCCCCceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEecCCCcEEEEec-----C----CCCCccc
Q psy8706 20 DTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTS-----P----ISTPTHW 90 (186)
Q Consensus 20 ~~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTs-----P----~~~~THW 90 (186)
..++++|..|..||+.-- -..+ +-.+.+.+-+.-|++.+|..-.|. .+.|||| | .. .-|+
T Consensus 528 ~~~~~d~~eIL~F~~~~~-V~~Q------k~~V~i~~~~sS~A~~mWME~~~~---~~nLSTGLL~~~~~G~~~W-N~~~ 596 (636)
T KOG1501|consen 528 GIVKGDAVEILRFPIDGR-VSSQ------KCVVNIDNMSSSNAIPMWMEWEFG---GINLSTGLLSISSAGVPEW-NKGY 596 (636)
T ss_pred CeecCCceeEEEeccCCc-cccc------eeEEEccCCCccccceeeEEeeeC---ceeecccceeecCCCCccc-Cccc
Confidence 346789999999888543 0111 223556677889999999999996 5667664 3 22 4589
Q ss_pred ceeEeeec
Q psy8706 91 KQSIFLLK 98 (186)
Q Consensus 91 kQtv~~l~ 98 (186)
||.+||..
T Consensus 597 KQ~VYF~~ 604 (636)
T KOG1501|consen 597 KQGVYFPI 604 (636)
T ss_pred cceeEEEh
Confidence 99999963
No 13
>PF04823 Herpes_UL49_2: Herpesvirus UL49 tegument protein; InterPro: IPR006908 This is a family of herpesvirus UL49 tegument proteins. It was shown that interactions between herpesvirus envelope and tegument proteins may play a role in secondary envelopment during herpesvirus virion maturation.
Probab=32.03 E-value=17 Score=25.89 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=19.4
Q ss_pred CceEEccCCCCCCCceeeeEEecc
Q psy8706 158 SPVEFSTSPISTPTHWKQSIFLLK 181 (186)
Q Consensus 158 ~~v~lsT~P~~~~THWkQt~~~l~ 181 (186)
++..|||.|.++.++|+-....++
T Consensus 14 k~l~FS~tP~s~t~pW~~~T~~fN 37 (96)
T PF04823_consen 14 KPLAFSTTPKSPTSPWRGATHAFN 37 (96)
T ss_pred CccccCCCCCCCCCCCcCCcccch
Confidence 468899999999999987665443
No 14
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=30.93 E-value=38 Score=27.68 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=11.8
Q ss_pred ccCCeEEEeccCCcE--eEEEEEEE
Q psy8706 129 FSSPFCLEARQDTRL--NCLVGYFD 151 (186)
Q Consensus 129 ~~~~f~~~~~~~~~~--~g~~~wFd 151 (186)
|+.+|.|++...+.. .||++||-
T Consensus 61 w~ie~~Fri~g~~~~~gdG~a~W~t 85 (225)
T cd06902 61 WEVEVTFRVTGRGRIGADGLAIWYT 85 (225)
T ss_pred EEEEEEEEEecCCCCCCCEEEEEEE
Confidence 555555555433322 45666664
No 15
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=28.99 E-value=72 Score=23.33 Aligned_cols=54 Identities=6% Similarity=-0.038 Sum_probs=33.7
Q ss_pred eeecCeeEeecCceeeeeeeecccccccccccccccC--------CeEEEeccCCcEeEEEE
Q psy8706 95 FLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSS--------PFCLEARQDTRLNCLVG 148 (186)
Q Consensus 95 ~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~--------~f~~~~~~~~~~~g~~~ 148 (186)
+..++++.+..|+.+...+...|..+...+.++.++. .+.+++++.|...|.|.
T Consensus 42 ~~~~~~l~lp~g~~v~~~ltS~DViHsf~ip~~~~k~d~~PG~~~~~~~~~~~~G~y~~~C~ 103 (120)
T PF00116_consen 42 LETDNELVLPAGQPVRFHLTSEDVIHSFWIPELGIKMDAIPGRTNSVTFTPDKPGTYYGQCA 103 (120)
T ss_dssp TEBSSEEEEETTSEEEEEEEESSS-EEEEETTCTEEEEEBTTCEEEEEEEESSSEEEEEEE-
T ss_pred ccccceecccccceEeEEEEcCCccccccccccCcccccccccceeeeeeeccCCcEEEcCc
Confidence 3455677888899888888877776655555554332 25555566666666554
No 16
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=28.73 E-value=45 Score=25.56 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=32.0
Q ss_pred EEEecCCCCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEEEeccCCcEeEEEEEEE
Q psy8706 78 EFSTSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFD 151 (186)
Q Consensus 78 ~LSTsP~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd 151 (186)
.+...|+. .-.|..+.+++|+.+.+||.|..++.-..... ...... +. -..+.++.++..|+-
T Consensus 67 l~~~~~~d---fn~Q~~y~l~~~v~i~~GD~l~~~C~Ydns~~---~~~v~~-G~----~t~DEMC~~~l~yyp 129 (156)
T PF03712_consen 67 LGRIPPYD---FNWQEFYPLKEPVTIPPGDTLRTECTYDNSDR---PRVVFG-GE----GTTDEMCNFYLMYYP 129 (156)
T ss_dssp EEEE-TTS-------S-EEEEEEEEE-TT-EEEEEEEEE-TT----SS-EEB-SS----STTSB-EEEEEEEEE
T ss_pred EEecCCCC---CccceeEECCCceEecCCCEEEEEEEEeCCCC---Cceeec-CC----CCcchHHhhhhheec
Confidence 33444443 33466889999999999999999876544211 111111 10 135677888888764
No 17
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=22.43 E-value=67 Score=26.70 Aligned_cols=26 Identities=0% Similarity=0.020 Sum_probs=15.2
Q ss_pred cccCCeEEEeccCC---cEeEEEEEEEEE
Q psy8706 128 NFSSPFCLEARQDT---RLNCLVGYFDTY 153 (186)
Q Consensus 128 ~~~~~f~~~~~~~~---~~~g~~~wFd~~ 153 (186)
+|+..|.|++...+ .=+||++|+--.
T Consensus 58 ~F~~~f~F~I~~~~~~~~GdGlAfw~t~~ 86 (248)
T cd06901 58 DWEMHVHFKVHGSGKNLFGDGFAIWYTKE 86 (248)
T ss_pred CEEEEEEEEEeCCCCCCCCCEEEEEEEcC
Confidence 46666666665432 126777777543
Done!