Query psy8706
Match_columns 186
No_of_seqs 260 out of 1095
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 17:10:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7e_A Protein arginine N-meth 99.9 1.3E-25 4.6E-30 192.5 14.5 133 1-137 202-335 (349)
2 4hc4_A Protein arginine N-meth 99.9 1.8E-25 6.1E-30 194.2 12.0 131 1-135 220-362 (376)
3 1g6q_1 HnRNP arginine N-methyl 99.9 5.6E-24 1.9E-28 180.9 12.5 132 1-136 174-308 (328)
4 3r0q_C Probable protein argini 99.9 1.3E-23 4.4E-28 181.9 11.7 133 1-137 211-360 (376)
5 2fyt_A Protein arginine N-meth 99.9 8.6E-23 2.9E-27 174.6 13.3 127 1-131 200-328 (340)
6 2y1w_A Histone-arginine methyl 99.8 6.3E-19 2.1E-23 150.8 13.5 107 9-118 201-309 (348)
7 3ua3_A Protein arginine N-meth 99.8 4.7E-19 1.6E-23 163.1 13.0 110 2-115 585-698 (745)
8 3b3j_A Histone-arginine methyl 99.7 5.6E-18 1.9E-22 151.2 11.9 107 9-118 309-417 (480)
9 3q7e_A Protein arginine N-meth 99.7 4.6E-18 1.6E-22 145.6 7.0 80 106-185 221-302 (349)
10 4gqb_A Protein arginine N-meth 99.7 2.2E-17 7.4E-22 151.4 11.7 104 8-115 497-604 (637)
11 4hc4_A Protein arginine N-meth 99.7 2.4E-17 8.1E-22 143.1 5.5 72 113-185 254-331 (376)
12 1g6q_1 HnRNP arginine N-methyl 99.6 1.4E-16 4.6E-21 135.3 6.8 72 113-185 202-276 (328)
13 3r0q_C Probable protein argini 99.6 1.5E-16 5E-21 137.6 5.2 89 97-185 227-327 (376)
14 2fyt_A Protein arginine N-meth 99.6 6.8E-16 2.3E-20 131.7 7.0 70 115-185 230-301 (340)
15 2y1w_A Histone-arginine methyl 99.6 2.2E-15 7.5E-20 128.8 6.1 70 115-185 222-293 (348)
16 3b3j_A Histone-arginine methyl 99.5 1.8E-14 6.2E-19 128.5 5.0 70 115-185 330-401 (480)
17 3ua3_A Protein arginine N-meth 99.4 8.3E-14 2.8E-18 128.5 6.3 87 97-185 592-685 (745)
18 4gqb_A Protein arginine N-meth 99.4 1.1E-13 3.9E-18 126.9 6.1 127 57-185 430-591 (637)
19 3hfn_A ASL2047 protein; HFQ, S 84.5 0.65 2.2E-05 30.5 2.6 46 131-181 24-69 (72)
20 3hfo_A SSR3341 protein; HFQ, S 82.5 1.1 3.6E-05 29.3 3.0 46 131-181 22-67 (70)
21 3hfn_A ASL2047 protein; HFQ, S 81.1 1.4 4.7E-05 28.9 3.2 46 48-98 24-69 (72)
22 3hfo_A SSR3341 protein; HFQ, S 79.0 1.9 6.6E-05 28.1 3.3 45 49-98 23-67 (70)
23 1yi9_A PAM, peptidyl-glycine a 31.4 23 0.00078 29.2 2.2 54 89-150 223-276 (309)
24 2cua_A Protein (CUA); CUA cent 26.4 35 0.0012 24.4 2.2 50 99-148 60-117 (135)
25 1xe0_A Nucleophosmin; drosophi 24.3 76 0.0026 22.3 3.6 40 106-145 61-103 (114)
26 2ylb_A Protein HFQ; RNA-bindin 24.3 73 0.0025 20.6 3.2 30 130-164 21-50 (74)
27 1nlq_A Nucleoplasmin-like prot 22.1 1.1E+02 0.0039 21.1 4.1 39 106-145 57-99 (108)
No 1
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.93 E-value=1.3e-25 Score=192.53 Aligned_cols=133 Identities=23% Similarity=0.457 Sum_probs=122.3
Q ss_pred CccchhhhhcCceEEecCCCCcCCCCceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEec-CCCcEEE
Q psy8706 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD-LPSPVEF 79 (186)
Q Consensus 1 Ms~~~~~~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~-~~~~v~L 79 (186)
|++|++.++.+|.|+.+++.+++++++.+.++|+.++ +.+++.+.++|++++.++|.+|||++|||+.|. ++.++.|
T Consensus 202 ~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~--~~~~l~~~~~~~~~~~~~~~~~g~~~~Fd~~~~~~~~~v~l 279 (349)
T 3q7e_A 202 MSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTV--KVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGF 279 (349)
T ss_dssp CGGGHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTC--CGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEE
T ss_pred hHHHhHhhhcCcEEEEEChhhEecccEEEEEEEcccC--chhhcceeeeEEEEEccCCEEEEEEEEEEEEecCCCCccEE
Confidence 7889999999999999999999999999999999999 999999999999999999999999999999998 4568999
Q ss_pred EecCCCCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEEEe
Q psy8706 80 STSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEA 137 (186)
Q Consensus 80 STsP~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~~~ 137 (186)
||+|.++.|||+|++|+|++|+.|++|+.|.|++.++.+.. ...+++++..+.++-
T Consensus 280 st~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~--~~r~~~~~~~~~~~~ 335 (349)
T 3q7e_A 280 STSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAK--NNRDLDFTIDLDFKG 335 (349)
T ss_dssp ECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSS--CSSCEEEEEEEEEEC
T ss_pred ECCCCcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCC--CCeeEEEEEEEEeCC
Confidence 99999999999999999999999999999999999988653 566777777766653
No 2
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=194.24 Aligned_cols=131 Identities=15% Similarity=0.288 Sum_probs=113.7
Q ss_pred Cccchhhhh------cCceEEecCCCCcCCCCceEEEEecCccCCCCcc---eeEeecEEEEeecCceeeEEEEEEEEEe
Q psy8706 1 MSVMTRLIY------SDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSC---VNFSSSFCLEARQDTRLNCLVGYFDTYF 71 (186)
Q Consensus 1 Ms~~~~~~~------~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~d---l~~~~~f~l~~~~~~~v~g~~~wFd~~F 71 (186)
||||++.+. .+|.|+.++++++|++|+.++++|++++ +.++ +.+..+|++++.++|.+|||++|||+.|
T Consensus 220 ~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~--~~~~~~~~~~~~~f~~~~~~~g~vhg~~~WFd~~f 297 (376)
T 4hc4_A 220 MSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRA--GLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTF 297 (376)
T ss_dssp CGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCT--THHHHHHHCEEEEEEEECCSSEEEEEEEEEEEEEE
T ss_pred chhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCC--CccccccccceeEEEEEecCCcEEEEEEEEEEEEe
Confidence 788877653 5899999999999999999999999999 8764 4688999999999999999999999999
Q ss_pred c---CCCcEEEEecCCCCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEE
Q psy8706 72 D---LPSPVEFSTSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCL 135 (186)
Q Consensus 72 ~---~~~~v~LSTsP~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~ 135 (186)
+ ++.++.|||||.+++|||+|++|+|++|+.|++|+.|.|++.+..+.. ...+++++..|++
T Consensus 298 ~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~--n~R~~~i~i~~~~ 362 (376)
T 4hc4_A 298 PGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRD--NPRRLRVLLRYKV 362 (376)
T ss_dssp CCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSS--CTTSEEEEEEEEE
T ss_pred cCCCCCCceEEeCCCCcCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCC--CCceeEEEEEEEe
Confidence 7 456799999999999999999999999999999999999999888642 4566766666655
No 3
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.91 E-value=5.6e-24 Score=180.91 Aligned_cols=132 Identities=28% Similarity=0.410 Sum_probs=118.6
Q ss_pred CccchhhhhcCceEEecCCCCcCCCCceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEecC---CCcE
Q psy8706 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDL---PSPV 77 (186)
Q Consensus 1 Ms~~~~~~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~~---~~~v 77 (186)
|+++++.+..+|.|+.+++.+++++|+.+.++|+.++ +.+++.+..+|++++.++|.+||+++|||+.|.. +.++
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~~~v 251 (328)
T 1g6q_1 174 YSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTV--KISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPV 251 (328)
T ss_dssp CTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTC--CGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCC
T ss_pred hHHHhhhhhcCCeEEEeccceeecCCEEEEEEECCCC--ChhHhceeeeEEEEEecCcEEEEEEEEEEEEcCCCCCCCce
Confidence 5678888899999999999999999999999999999 9999999999999999999999999999999973 4579
Q ss_pred EEEecCCCCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEEE
Q psy8706 78 EFSTSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLE 136 (186)
Q Consensus 78 ~LSTsP~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~~ 136 (186)
.|||+|.++.|||+|++++|++|+.|++|+.|.+++.++.+.. ...+++++..+++.
T Consensus 252 ~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~--~~r~~~~~~~~~~~ 308 (328)
T 1g6q_1 252 EFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEK--NNRDLNIKISYKFE 308 (328)
T ss_dssp EEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETT--EEEEEEEEEEEEEE
T ss_pred EEECCCCcCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCC--CCceEEEEEEEEec
Confidence 9999999999999999999999999999999999999988643 35666666666554
No 4
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.90 E-value=1.3e-23 Score=181.95 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=116.3
Q ss_pred Cccchhh--------hhcCceEEecCCCCcCCCCceEEEEecCccCCCCcce-eEeecEEEEe-ecCceeeEEEEEEEEE
Q psy8706 1 MSVMTRL--------IYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCV-NFSSSFCLEA-RQDTRLNCLVGYFDTY 70 (186)
Q Consensus 1 Ms~~~~~--------~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl-~~~~~f~l~~-~~~~~v~g~~~wFd~~ 70 (186)
|++|++. ++.+|+++.+++.+++++|+.++++|++++ +.+++ .+.++|++++ .++|.+|||++|||+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~g~~~wfd~~ 288 (376)
T 3r0q_C 211 MGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA--SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQ 288 (376)
T ss_dssp CGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTC--CGGGTSEEEEEEEEBCSCSCEEEEEEEEEEEEE
T ss_pred hHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcC--CHHHhcccccceEEEEeccCceEEEEEEEEEEE
Confidence 5667665 679999999999999999999999999999 99999 4999999999 9999999999999999
Q ss_pred ecC------CCcEEEEecCC-CCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEEEe
Q psy8706 71 FDL------PSPVEFSTSPI-STPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEA 137 (186)
Q Consensus 71 F~~------~~~v~LSTsP~-~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~~~ 137 (186)
|.+ +.++.|||||. .+.|||+|++++|++|+.|++|+.|.|++.+..+.. ...+++++..+.++-
T Consensus 289 ~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~--~~r~~~~~~~~~~~~ 360 (376)
T 3r0q_C 289 FSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKE--NHRLMEIELNCEIKE 360 (376)
T ss_dssp EEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSS--CTTSEEEEEEEEEEC
T ss_pred ecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEEEEEEEECCC--CCeeEEEEEEEEecC
Confidence 962 34699999999 579999999999999999999999999999988642 355777766666653
No 5
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.89 E-value=8.6e-23 Score=174.60 Aligned_cols=127 Identities=28% Similarity=0.505 Sum_probs=114.2
Q ss_pred CccchhhhhcCceEEecCCCCcCCCCceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEe-c-CCCcEE
Q psy8706 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYF-D-LPSPVE 78 (186)
Q Consensus 1 Ms~~~~~~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F-~-~~~~v~ 78 (186)
|+++++.++.+|.++.+++.+++++|+.+.++|+.++ +.+++.|..+|.+++.++|.+||+++|||+.| + +.+++.
T Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~v~ 277 (340)
T 2fyt_A 200 MSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTT--SISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVV 277 (340)
T ss_dssp CGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTC--CGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEE
T ss_pred hHHHHHhhhcCcEEEEechhhcccCCEEEEEEECCCC--cccccceEeeEEEEEccCcEEEEEEEEEEEEeecCCCCCEE
Confidence 5678888899999999999999999999999999999 99999999999999999999999999999999 3 557899
Q ss_pred EEecCCCCCcccceeEeeecCeeEeecCceeeeeeeecccccccccccccccC
Q psy8706 79 FSTSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSS 131 (186)
Q Consensus 79 LSTsP~~~~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~ 131 (186)
|||+|.++.|||+|++++|++|+.|++|+.|.+++.++.+.. ...+++++.
T Consensus 278 lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~--~~r~~~~~~ 328 (340)
T 2fyt_A 278 FSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKK--DPRSLTVTL 328 (340)
T ss_dssp EECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSS--CTTSEEEEE
T ss_pred EECCCCcCCCccccEEEEeCCceEcCCCCEEEEEEEEEECCC--CCceEEEEE
Confidence 999999999999999999999999999999999998887642 345555443
No 6
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.79 E-value=6.3e-19 Score=150.84 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=93.6
Q ss_pred hcCceEEecCCCCcCCCCceEEEEecCccCCCCcce-eEeecEEEEeecCceeeEEEEEEEEEec-CCCcEEEEecCCCC
Q psy8706 9 YSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCV-NFSSSFCLEARQDTRLNCLVGYFDTYFD-LPSPVEFSTSPIST 86 (186)
Q Consensus 9 ~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl-~~~~~f~l~~~~~~~v~g~~~wFd~~F~-~~~~v~LSTsP~~~ 86 (186)
+.+|.++..+..... .+.....+|+.++ +.+++ .+..+|++++.++|.+|||++|||+.|. ++..+.|||+|..+
T Consensus 201 f~~p~~d~~~~~~~~-~~~~~~~~df~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~ 277 (348)
T 2y1w_A 201 FRQPVVDTFDIRILM-AKSVKYTVNFLEA--KEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEP 277 (348)
T ss_dssp HTSCEEECCCGGGBC-BCCEEEEEETTTC--CGGGGSEEEEEEEEEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTSC
T ss_pred ccCCeEEeECCeeec-CcceEEEEECCcC--ChHHhceeeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCcC
Confidence 578999887765444 4444568899999 88888 5889999999999999999999999998 45579999999999
Q ss_pred CcccceeEeeecCeeEeecCceeeeeeeeccc
Q psy8706 87 PTHWKQSIFLLKTPITLSKVKQDMDFLHSKSL 118 (186)
Q Consensus 87 ~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl 118 (186)
.|||+|++++|++|+.|++|+.|.|++.++.+
T Consensus 278 ~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~ 309 (348)
T 2y1w_A 278 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIAN 309 (348)
T ss_dssp CCTTCEEEEEEEEEEEECTTCEEEEEEEEEEC
T ss_pred CCeeeeEEEeeCCceEeCCCCEEEEEEEEEEC
Confidence 99999999999999999999999999987764
No 7
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=99.79 E-value=4.7e-19 Score=163.13 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=102.6
Q ss_pred ccchhhhhcCceEEecCCCCcCCC-CceEEEEecCccCCCCcceeEeecEEEEeecCceeeEEEEEEEEEecCCCcEEEE
Q psy8706 2 SVMTRLIYSDVQILTLPPDTIVTS-SSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFS 80 (186)
Q Consensus 2 s~~~~~~~~ep~v~~v~~~~ilt~-~~~i~~~Dl~t~~~~~~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LS 80 (186)
+|+++.++.+|+|..+.+.++|++ ++.+++||+.+. +.++..+.++|++++.++|.+|||++|||+.|. ..|.||
T Consensus 585 ~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vftFdhp~~--~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Ly--k~V~LS 660 (745)
T 3ua3_A 585 QGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNF--MNSSNERSDSIEFVMDRNADLMGFAGYFDLQLY--KTVMLS 660 (745)
T ss_dssp TCHHHHHHSSCEEECCCSCEESSSSCEEEEEEESSCT--TCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEE--TTEEEE
T ss_pred cccccccccccEEEeeccceecCCCCceEEEEECCCC--CccccceeEEEEEEeCCCcEEEEEEEEEEEEec--CCcEEe
Confidence 456888899999999999999999 999999999999 888889999999999999999999999999998 679999
Q ss_pred ecCCCC---CcccceeEeeecCeeEeecCceeeeeeee
Q psy8706 81 TSPIST---PTHWKQSIFLLKTPITLSKVKQDMDFLHS 115 (186)
Q Consensus 81 TsP~~~---~THWkQtv~~l~~p~~v~~g~~I~g~v~~ 115 (186)
|+|.++ .|||+|++|+|++|+.|++|+.|.+.+.-
T Consensus 661 T~P~t~s~~mThWfQtfFPL~ePL~V~~GdeI~g~~~R 698 (745)
T 3ua3_A 661 IEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDR 698 (745)
T ss_dssp CSSTTCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEE
T ss_pred cCCCCCCCCCccceeEEEecCCceEeCCCCEEEEEEEE
Confidence 999876 68999999999999999999999998744
No 8
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.75 E-value=5.6e-18 Score=151.16 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=95.6
Q ss_pred hcCceEEecCCCCcCCCCceEEEEecCccCCCCcce-eEeecEEEEeecCceeeEEEEEEEEEec-CCCcEEEEecCCCC
Q psy8706 9 YSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCV-NFSSSFCLEARQDTRLNCLVGYFDTYFD-LPSPVEFSTSPIST 86 (186)
Q Consensus 9 ~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~~dl-~~~~~f~l~~~~~~~v~g~~~wFd~~F~-~~~~v~LSTsP~~~ 86 (186)
+.+|+++..+.....+++.. ..+|+.+. +.+++ .+..+|++++.++|.+|||++|||+.|+ +...+.|||+|..+
T Consensus 309 f~~pvvd~~~~~~~y~~tl~-~~~d~~~~--~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~~~~~~~~v~lST~P~~~ 385 (480)
T 3b3j_A 309 FRQPVVDTFDIRILMAKSVK-YTVNFLEA--KEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEP 385 (480)
T ss_dssp TTSCEECCCCSTTBCSCCEE-EEEETTTC--CTTTTTEEEEEEEEECSSCEEEEEEEEEEEEEEECSSCEEESSSCCSSS
T ss_pred cCCcEEEEeecccccchhhh-hhhhhhcC--ChhhhcceeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEeCCCCcC
Confidence 67799988888777766654 58999999 88888 5889999999999999999999999998 45579999999999
Q ss_pred CcccceeEeeecCeeEeecCceeeeeeeeccc
Q psy8706 87 PTHWKQSIFLLKTPITLSKVKQDMDFLHSKSL 118 (186)
Q Consensus 87 ~THWkQtv~~l~~p~~v~~g~~I~g~v~~~dl 118 (186)
.|||+|++++|++|+.|++|+.|.|.+.++.+
T Consensus 386 ~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~ 417 (480)
T 3b3j_A 386 LTHWYQVRCLFQSPLFAKAGDTLSGTCLLIAN 417 (480)
T ss_dssp CCCSEEEEEEEEEEEEECTTCEEEEEEEEEEC
T ss_pred CCeeeeEEEEeCCceEeCCCCEEEEEEEEEEC
Confidence 99999999999999999999999999988765
No 9
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.72 E-value=4.6e-18 Score=145.59 Aligned_cols=80 Identities=31% Similarity=0.534 Sum_probs=66.9
Q ss_pred Cceeeeeeeeccc-ccccccccccccCCeEEEeccCCcEeEEEEEEEEEecC-CCceEEccCCCCCCCceeeeEEeccCC
Q psy8706 106 VKQDMDFLHSKSL-ARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDL-PSPVEFSTSPISTPTHWKQSIFLLKTP 183 (186)
Q Consensus 106 g~~I~g~v~~~dl-~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~-~~~v~lsT~P~~~~THWkQt~~~l~~p 183 (186)
.+.+.-......+ ..+++.+||.|..+|++++.++|.+|||++|||+.|.+ +.+|.|||||.++.|||||++|+|++|
T Consensus 221 ~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p 300 (349)
T 3q7e_A 221 KQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDY 300 (349)
T ss_dssp GGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEE
T ss_pred hhEecccEEEEEEEcccCchhhcceeeeEEEEEccCCEEEEEEEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCc
Confidence 3334333333333 34688999999999999999999999999999999985 568999999999999999999999998
Q ss_pred CC
Q psy8706 184 IG 185 (186)
Q Consensus 184 ~~ 185 (186)
+.
T Consensus 301 ~~ 302 (349)
T 3q7e_A 301 LT 302 (349)
T ss_dssp EE
T ss_pred eE
Confidence 74
No 10
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=99.72 E-value=2.2e-17 Score=151.44 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=93.2
Q ss_pred hhcCceEEecCCCCcCCCCceEEEEecCccCCCC-cceeEeecEEEEeecCceeeEEEEEEEEEecCCCcEEEEecCCC-
Q psy8706 8 IYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTS-SCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIS- 85 (186)
Q Consensus 8 ~~~ep~v~~v~~~~ilt~~~~i~~~Dl~t~~~~~-~dl~~~~~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTsP~~- 85 (186)
.+.+|.|..+++.+++++++.++++|+.+. .. ++..+..+|++++.++|.+|||++|||+.|. +.+.|||+|..
T Consensus 497 ~~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~--~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~--~~V~LST~P~~~ 572 (637)
T 4gqb_A 497 QFEMPYVVRLHNFHQLSAPQPCFTFSHPNR--DPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLY--QDITLSIRPETH 572 (637)
T ss_dssp GGGSCEECBCCSCEECSCCEEEEEEESSCC--STTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEE--TTEEEECSGGGC
T ss_pred hcCCcEEEEecCccccCCCEEEEEEECCCC--CccccceEEEEEEEEecCCcEEEEEEEEEEEEee--CCeEEECCCCCC
Confidence 468899999999999999999999999776 44 3457889999999999999999999999998 77999999973
Q ss_pred --CCcccceeEeeecCeeEeecCceeeeeeee
Q psy8706 86 --TPTHWKQSIFLLKTPITLSKVKQDMDFLHS 115 (186)
Q Consensus 86 --~~THWkQtv~~l~~p~~v~~g~~I~g~v~~ 115 (186)
+.|||+|++|+|++|+.|++|+.|++++..
T Consensus 573 s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R 604 (637)
T 4gqb_A 573 SPGMFSWFPILFPIKQPITVREGQTICVRFWR 604 (637)
T ss_dssp CTTCCSCCCEEEEEEEEEEECTTCEEEEEEEE
T ss_pred CCCCCcccCeEEEeCCCeEECCCCEEEEEEEE
Confidence 469999999999999999999999998753
No 11
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=143.14 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=60.0
Q ss_pred eeecccccccccc---cccccCCeEEEeccCCcEeEEEEEEEEEecC---CCceEEccCCCCCCCceeeeEEeccCCCC
Q psy8706 113 LHSKSLARTTTSS---CVNFSSPFCLEARQDTRLNCLVGYFDTYFDL---PSPVEFSTSPISTPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 113 v~~~dl~~~~~~~---dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~---~~~v~lsT~P~~~~THWkQt~~~l~~p~~ 185 (186)
+...|+. +++.+ ++.|..+|++++.++|.+|||++|||+.|.+ +++|.|||||.+|+|||||++|+|++|+.
T Consensus 254 i~~~D~~-~~~~~~~~~~~~~~~f~~~~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~ 331 (376)
T 4hc4_A 254 FAQLELS-RAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQ 331 (376)
T ss_dssp EEEEETT-CTTHHHHHHHCEEEEEEEECCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEE
T ss_pred EEEEECC-CCCccccccccceeEEEEEecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEeCCceE
Confidence 3344444 45655 3468889999999999999999999999974 46899999999999999999999999974
No 12
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.65 E-value=1.4e-16 Score=135.29 Aligned_cols=72 Identities=39% Similarity=0.600 Sum_probs=63.0
Q ss_pred eeecccccccccccccccCCeEEEeccCCcEeEEEEEEEEEecC---CCceEEccCCCCCCCceeeeEEeccCCCC
Q psy8706 113 LHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDL---PSPVEFSTSPISTPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 113 v~~~dl~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~---~~~v~lsT~P~~~~THWkQt~~~l~~p~~ 185 (186)
+...|+. +++.++++|..+|+++++++|.+|||++|||+.|.. +.++.|||||.++.|||||++|+|++|+.
T Consensus 202 ~~~~d~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~ 276 (328)
T 1g6q_1 202 LIEFDLN-TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLD 276 (328)
T ss_dssp EEEEETT-TCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEE
T ss_pred EEEEECC-CCChhHhceeeeEEEEEecCcEEEEEEEEEEEEcCCCCCCCceEEECCCCcCCCcceeEEEEeCCcee
Confidence 3334444 577899999999999999999999999999999974 45899999999999999999999999863
No 13
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.63 E-value=1.5e-16 Score=137.58 Aligned_cols=89 Identities=26% Similarity=0.388 Sum_probs=68.9
Q ss_pred ecCee-E-eecCceeeeeeeeccc-cccccccccc-ccCCeEEEe-ccCCcEeEEEEEEEEEecC------CCceEEccC
Q psy8706 97 LKTPI-T-LSKVKQDMDFLHSKSL-ARTTTSSCVN-FSSPFCLEA-RQDTRLNCLVGYFDTYFDL------PSPVEFSTS 165 (186)
Q Consensus 97 l~~p~-~-v~~g~~I~g~v~~~dl-~~~~~~~dl~-~~~~f~~~~-~~~~~~~g~~~wFd~~F~~------~~~v~lsT~ 165 (186)
+.+|+ . +.+.+.++-......+ .++++.+|+. |+++|++++ .++|.+|||++|||+.|.+ +++|.||||
T Consensus 227 ~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~ 306 (376)
T 3r0q_C 227 IQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTA 306 (376)
T ss_dssp TSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGTSEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ccCceEEEEChHHccCCCeEEEEEEcCcCCHHHhcccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECC
Confidence 34554 2 2444444443444433 3468889996 999999999 9999999999999999963 247999999
Q ss_pred CC-CCCCceeeeEEeccCCCC
Q psy8706 166 PI-STPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 166 P~-~~~THWkQt~~~l~~p~~ 185 (186)
|. .+.|||||++|+|++|+.
T Consensus 307 P~~~~~thW~q~~~~l~~p~~ 327 (376)
T 3r0q_C 307 PSEQHCTHWGQQVFIMSNPIN 327 (376)
T ss_dssp CCSSCCCTTCEEEEEEEEEEE
T ss_pred CCcCCCCceeeEEEEECCcee
Confidence 99 579999999999999873
No 14
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.61 E-value=6.8e-16 Score=131.72 Aligned_cols=70 Identities=43% Similarity=0.702 Sum_probs=61.8
Q ss_pred ecccccccccccccccCCeEEEeccCCcEeEEEEEEEEEe-c-CCCceEEccCCCCCCCceeeeEEeccCCCC
Q psy8706 115 SKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYF-D-LPSPVEFSTSPISTPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 115 ~~dl~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F-~-~~~~v~lsT~P~~~~THWkQt~~~l~~p~~ 185 (186)
..++. +++.+++.|..+|.+++.++|.+|||++|||+.| + +..++.|||||.++.|||||++|+|++|+.
T Consensus 230 ~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~ 301 (340)
T 2fyt_A 230 HIDCH-TTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFS 301 (340)
T ss_dssp EEETT-TCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEE
T ss_pred EEECC-CCcccccceEeeEEEEEccCcEEEEEEEEEEEEeecCCCCCEEEECCCCcCCCccccEEEEeCCceE
Confidence 34433 5678889999999999999999999999999999 4 457899999999999999999999999863
No 15
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.56 E-value=2.2e-15 Score=128.81 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=60.9
Q ss_pred eccccccccccccc-ccCCeEEEeccCCcEeEEEEEEEEEecC-CCceEEccCCCCCCCceeeeEEeccCCCC
Q psy8706 115 SKSLARTTTSSCVN-FSSPFCLEARQDTRLNCLVGYFDTYFDL-PSPVEFSTSPISTPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 115 ~~dl~~~~~~~dl~-~~~~f~~~~~~~~~~~g~~~wFd~~F~~-~~~v~lsT~P~~~~THWkQt~~~l~~p~~ 185 (186)
+.++. +.+.+|+. +..+|++++.++|.+|||++|||+.|.+ ++.|.|||||.++.|||||++|+|++|+.
T Consensus 222 ~~df~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~ 293 (348)
T 2y1w_A 222 TVNFL-EAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLF 293 (348)
T ss_dssp EEETT-TCCGGGGSEEEEEEEEEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEE
T ss_pred EEECC-cCChHHhceeeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceE
Confidence 34544 46677874 8899999999999999999999999985 56899999999999999999999999963
No 16
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.48 E-value=1.8e-14 Score=128.45 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=60.5
Q ss_pred eccccccccccccc-ccCCeEEEeccCCcEeEEEEEEEEEecC-CCceEEccCCCCCCCceeeeEEeccCCCC
Q psy8706 115 SKSLARTTTSSCVN-FSSPFCLEARQDTRLNCLVGYFDTYFDL-PSPVEFSTSPISTPTHWKQSIFLLKTPIG 185 (186)
Q Consensus 115 ~~dl~~~~~~~dl~-~~~~f~~~~~~~~~~~g~~~wFd~~F~~-~~~v~lsT~P~~~~THWkQt~~~l~~p~~ 185 (186)
..++. +.+.+|+. +..+|++++.++|.+|||++|||+.|.+ ++.+.|||||.++.|||||++|+|++|+.
T Consensus 330 ~~d~~-~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~ 401 (480)
T 3b3j_A 330 TVNFL-EAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLF 401 (480)
T ss_dssp EEETT-TCCTTTTTEEEEEEEEECSSCEEEEEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEE
T ss_pred hhhhh-cCChhhhcceeeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceE
Confidence 34443 46677875 7899999999999999999999999984 56799999999999999999999999963
No 17
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=99.44 E-value=8.3e-14 Score=128.46 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=66.6
Q ss_pred ecCeeE--eecCceeee-eeeeccc-ccccccccccccCCeEEEeccCCcEeEEEEEEEEEecCCCceEEccCCCCC---
Q psy8706 97 LKTPIT--LSKVKQDMD-FLHSKSL-ARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIST--- 169 (186)
Q Consensus 97 l~~p~~--v~~g~~I~g-~v~~~dl-~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT~P~~~--- 169 (186)
+++|+- +..-..+.. ...+..+ ..+.+++|+++..+|+|+++++|.+|||++|||+.|.+ .|.|||+|..+
T Consensus 592 ~e~PyVv~l~~~~~Ls~~pq~vftFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk--~V~LST~P~t~s~~ 669 (745)
T 3ua3_A 592 MDQIYVVYLSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYK--TVMLSIEPSTHTPG 669 (745)
T ss_dssp HSSCEEECCCSCEESSSSCEEEEEEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEET--TEEEECSSTTCCTT
T ss_pred ccccEEEeeccceecCCCCceEEEEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecC--CcEEecCCCCCCCC
Confidence 445552 233333443 3333333 22456778999999999999999999999999999984 69999999987
Q ss_pred CCceeeeEEeccCCCC
Q psy8706 170 PTHWKQSIFLLKTPIG 185 (186)
Q Consensus 170 ~THWkQt~~~l~~p~~ 185 (186)
.|||||++|+|++|+.
T Consensus 670 mThWfQtfFPL~ePL~ 685 (745)
T 3ua3_A 670 MVSWFPAVIPLRDQLR 685 (745)
T ss_dssp CCSCCCEEEEEEEEEE
T ss_pred CccceeEEEecCCceE
Confidence 6899999999999873
No 18
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=99.42 E-value=1.1e-13 Score=126.87 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=85.4
Q ss_pred CceeeEEEEEEEEEec------------------CCCcEEEEecCCCCCcccceeEee----------ecCeeE--eecC
Q psy8706 57 DTRLNCLVGYFDTYFD------------------LPSPVEFSTSPISTPTHWKQSIFL----------LKTPIT--LSKV 106 (186)
Q Consensus 57 ~~~v~g~~~wFd~~F~------------------~~~~v~LSTsP~~~~THWkQtv~~----------l~~p~~--v~~g 106 (186)
|.+|+.++|+|...-. -|+...+..+|...+..|.+...+ ++.|+. +..-
T Consensus 430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~e~~~~~~~~~~~~~~~~~p~Vv~~~~~ 509 (637)
T 4gqb_A 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREKDRDPEAQFEMPYVVRLHNF 509 (637)
T ss_dssp EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHHHHHTTCCTTSCTTGGGGSCEECBCCSC
T ss_pred CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEccccceEEEEEecCHHHHHHHHhcccccccchhhcCCcEEEEecCc
Confidence 6789999998865221 135556666675444444433222 334442 2223
Q ss_pred ceeeeeeee--cccccccccccccccCCeEEEeccCCcEeEEEEEEEEEecCCCceEEccCCCC---CCCceeeeEEecc
Q psy8706 107 KQDMDFLHS--KSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPIS---TPTHWKQSIFLLK 181 (186)
Q Consensus 107 ~~I~g~v~~--~dl~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT~P~~---~~THWkQt~~~l~ 181 (186)
..+.....+ .+.......++.++..+|+|++.++|.+|||++|||+.|.+ .|.|||+|.. +.|||+|++|+|+
T Consensus 510 ~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~~--~V~LST~P~~~s~~~THW~Q~vfpL~ 587 (637)
T 4gqb_A 510 HQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLYQ--DITLSIRPETHSPGMFSWFPILFPIK 587 (637)
T ss_dssp EECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEET--TEEEECSGGGCCTTCCSCCCEEEEEE
T ss_pred cccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEEEEEEEEEEeeC--CeEEECCCCCCCCCCCcccCeEEEeC
Confidence 333333222 33333334456789999999999999999999999999974 5999999974 5699999999999
Q ss_pred CCCC
Q psy8706 182 TPIG 185 (186)
Q Consensus 182 ~p~~ 185 (186)
+|+.
T Consensus 588 ~Pl~ 591 (637)
T 4gqb_A 588 QPIT 591 (637)
T ss_dssp EEEE
T ss_pred CCeE
Confidence 9974
No 19
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=84.45 E-value=0.65 Score=30.53 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCeEEEeccCCcEeEEEEEEEEEecCCCceEEccCCCCCCCceeeeEEecc
Q psy8706 131 SPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLK 181 (186)
Q Consensus 131 ~~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT~P~~~~THWkQt~~~l~ 181 (186)
.+.+++....+.+.|-+.|+|-+| +-|..+=..+-.-|||.+-|+.
T Consensus 24 ~~V~I~L~tGd~l~G~i~WQD~~c-----l~L~~~~~~~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 24 APVEIKLVTGDAITGRVLWQDPTC-----VCIADENSRQTTIWKQAIAYLQ 69 (72)
T ss_dssp CEEEEEETTSCEEEEEEEEECSSE-----EEEEC---CEEEEEGGGEEEEE
T ss_pred ceEEEEecCCCEEEEEEEEECCCE-----EEEEcCCCCeEEEEeeeeEEEE
Confidence 456777778899999999999888 3344322334556999888774
No 20
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=82.49 E-value=1.1 Score=29.34 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=33.1
Q ss_pred CCeEEEeccCCcEeEEEEEEEEEecCCCceEEccCCCCCCCceeeeEEecc
Q psy8706 131 SPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLK 181 (186)
Q Consensus 131 ~~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT~P~~~~THWkQt~~~l~ 181 (186)
.+.+++......+.|-+.|||-+| +-|..+=..+-.-|||.+-|+.
T Consensus 22 ~~V~I~L~tG~~l~G~i~WQD~~c-----l~L~~~~~~~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 22 TPVEIKLLTGDSLFGTIRWQDTDG-----LGLVDDSERSTIVRLAAIAYIT 67 (70)
T ss_dssp CEEEEEETTSCEEEEEEEEECSSE-----EEEECTTCCEEEEEGGGEEEEE
T ss_pred ceEEEEecCCCEEEEEEEEeCCCE-----EEEEcCCCCeEEEEeeeeEEEe
Confidence 466777778899999999999887 4444322234456898887764
No 21
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=81.13 E-value=1.4 Score=28.94 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=33.1
Q ss_pred ecEEEEeecCceeeEEEEEEEEEecCCCcEEEEecCCCCCcccceeEeeec
Q psy8706 48 SSFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLK 98 (186)
Q Consensus 48 ~~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTsP~~~~THWkQtv~~l~ 98 (186)
.+.+++...+..+.|-..|+|-+| +.|..+-..+..-|||++.++.
T Consensus 24 ~~V~I~L~tGd~l~G~i~WQD~~c-----l~L~~~~~~~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 24 APVEIKLVTGDAITGRVLWQDPTC-----VCIADENSRQTTIWKQAIAYLQ 69 (72)
T ss_dssp CEEEEEETTSCEEEEEEEEECSSE-----EEEEC---CEEEEEGGGEEEEE
T ss_pred ceEEEEecCCCEEEEEEEEECCCE-----EEEEcCCCCeEEEEeeeeEEEE
Confidence 345677778889999999999976 4565543455677999988864
No 22
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=79.02 E-value=1.9 Score=28.08 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=33.5
Q ss_pred cEEEEeecCceeeEEEEEEEEEecCCCcEEEEecCCCCCcccceeEeeec
Q psy8706 49 SFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLK 98 (186)
Q Consensus 49 ~f~l~~~~~~~v~g~~~wFd~~F~~~~~v~LSTsP~~~~THWkQtv~~l~ 98 (186)
+.++....+..+.|-..|||-++ +.|..+-..+..-|||++-++.
T Consensus 23 ~V~I~L~tG~~l~G~i~WQD~~c-----l~L~~~~~~~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 23 PVEIKLLTGDSLFGTIRWQDTDG-----LGLVDDSERSTIVRLAAIAYIT 67 (70)
T ss_dssp EEEEEETTSCEEEEEEEEECSSE-----EEEECTTCCEEEEEGGGEEEEE
T ss_pred eEEEEecCCCEEEEEEEEeCCCE-----EEEEcCCCCeEEEEeeeeEEEe
Confidence 45677778889999999999976 5565543445677899888764
No 23
>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A
Probab=31.38 E-value=23 Score=29.20 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=34.0
Q ss_pred ccceeEeeecCeeEeecCceeeeeeeecccccccccccccccCCeEEEeccCCcEeEEEEEE
Q psy8706 89 HWKQSIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYF 150 (186)
Q Consensus 89 HWkQtv~~l~~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~~~f~~~~~~~~~~~g~~~wF 150 (186)
+|-|.++.|++|+.+.+||.+..++....... +... -+-. -.++.++.++..|+
T Consensus 223 ~~~Q~~y~l~~~v~i~~GD~L~~~C~yd~s~r----~~~t---~~G~-~t~dEMC~~yi~Yy 276 (309)
T 1yi9_A 223 QLPQAFYPVEHPVDVTFGDILAARCVFTGEGR----TEAT---HIGG-TSSDEICNLYIMYY 276 (309)
T ss_dssp TSCCSCEEEEEEEEECTTCEEEEEEEEECC----------------------CCEEEEEEEE
T ss_pred CCceeEEEcCCceEECCCCEEEEEEEecCCCC----Ccce---eCCC-CccchhhheeEEEE
Confidence 57799999999999999999999876653211 0010 1111 13667888888886
No 24
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=26.41 E-value=35 Score=24.45 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=27.8
Q ss_pred CeeEeecCceeeeeeeeccccccccccccccc--------CCeEEEeccCCcEeEEEE
Q psy8706 99 TPITLSKVKQDMDFLHSKSLARTTTSSCVNFS--------SPFCLEARQDTRLNCLVG 148 (186)
Q Consensus 99 ~p~~v~~g~~I~g~v~~~dl~~~~~~~dl~~~--------~~f~~~~~~~~~~~g~~~ 148 (186)
+.+.+..|+.|.-.+...|..+.....++.++ ..+.++.++.|...+.|.
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~ip~~~~k~d~~PG~~~~~~~~~~~~G~y~~~C~ 117 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICN 117 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEEECCSCEEEEEECC
T ss_pred CEEEEcCCCEEEEEEEeCCccceEEecCCCceeEeCCCCcEEEEEEcCCCEEEEEECc
Confidence 45677888887776655555444444443221 235555566665555443
No 25
>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP), nucleoplasmin (NP), histone binding, X-RAY crystallography, chaperone; 1.70A {Xenopus laevis} SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A
Probab=24.33 E-value=76 Score=22.32 Aligned_cols=40 Identities=15% Similarity=0.005 Sum_probs=27.7
Q ss_pred Cceeeeeeeeccc--ccccccccccccCCeEEEe-ccCCcEeE
Q psy8706 106 VKQDMDFLHSKSL--ARTTTSSCVNFSSPFCLEA-RQDTRLNC 145 (186)
Q Consensus 106 g~~I~g~v~~~dl--~~~~~~~dl~~~~~f~~~~-~~~~~~~g 145 (186)
|+.+...+..... ...++..+++|+.|..|+. ..+|.||=
T Consensus 61 g~~ikv~la~Lk~s~~p~v~L~~le~~ppVtF~L~~GsGPVhi 103 (114)
T 1xe0_A 61 GKTIKIALASLKPSVQPTVSLGGFEITPPVILRLKSGSGPVYV 103 (114)
T ss_dssp SCEEEEEEEEEBTTTBCEEEEEEEEECSCEEEEEEESCCCEEE
T ss_pred CCcceEEEEEEcCCCcceEEeCCcEECCCEEEEEEEcCCCEEE
Confidence 7777666544433 3347788999998888888 46677663
No 26
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=24.28 E-value=73 Score=20.60 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=21.8
Q ss_pred cCCeEEEeccCCcEeEEEEEEEEEecCCCceEEcc
Q psy8706 130 SSPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFST 164 (186)
Q Consensus 130 ~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~v~lsT 164 (186)
..+..+.......+.|.+.|||-.. |.|..
T Consensus 21 k~~Vti~L~nG~~l~G~I~~fD~f~-----vlL~~ 50 (74)
T 2ylb_A 21 RVPVSIYLVNGIKLQGQIESFDQFV-----ILLKN 50 (74)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSE-----EEEES
T ss_pred CCcEEEEEeCCCEEEEEEEEECCcE-----EEEEC
Confidence 3466666666678999999999653 56654
No 27
>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1
Probab=22.11 E-value=1.1e+02 Score=21.08 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=24.6
Q ss_pred Cceeeeeeeeccc--ccccccccccc-cCCeEEEec-cCCcEeE
Q psy8706 106 VKQDMDFLHSKSL--ARTTTSSCVNF-SSPFCLEAR-QDTRLNC 145 (186)
Q Consensus 106 g~~I~g~v~~~dl--~~~~~~~dl~~-~~~f~~~~~-~~~~~~g 145 (186)
|+.+...+..... ...++. |++| +.|+.|+.+ .+|.||=
T Consensus 57 ~~~~kv~LatLk~~~~~~~~l-~l~f~~~pVtf~L~~GsGPVhi 99 (108)
T 1nlq_A 57 KDSVQIPIAVLKAGETRAVNP-DVEFYESKVTFKLIKGSGPVYI 99 (108)
T ss_dssp GGTEEEEEEEEEBTTBSEECC-CEEEESSCEEEEEEESCCCEEE
T ss_pred CCCcEEEEEEECCCCcceEec-ceEEeCCCEEEEEEecCCCEEE
Confidence 5555554443333 234666 8899 688999865 6777763
Done!