RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8706
         (186 letters)



>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase.  The human
           homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
           is PRMT5, an arginine-N-methyltransferase. These
           proteins appear to be key mitotic regulators. They play
           a role in Jak signalling in higher eukaryotes.
          Length = 445

 Score = 29.5 bits (67), Expect = 1.2
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 15/80 (18%)

Query: 31  SIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDT--YFDLPSPVEFSTSP-ISTP 87
           + D NS       + F      + + D  L+   GYFD   Y D    VE S  P   TP
Sbjct: 351 NRDENSHNERYKTLEF------KIKHDGVLHGFAGYFDAVLYKD----VELSILPNTHTP 400

Query: 88  --THWKQSIFLLKTPITLSK 105
               W    F LK P+ + K
Sbjct: 401 NMISWFPIFFPLKKPVYVKK 420


>gnl|CDD|164773 PHA00006, D, external scaffolding protein.
          Length = 151

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 93  SIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFD- 151
           SI L++    L   + D DFL    +   T  S     +  C+EA       C+ G  D 
Sbjct: 16  SIKLIQASAVLDLTEDDFDFLTGDKVWIATDRS----RARRCVEA-------CVYGTLDF 64

Query: 152 -TYFDLPSPVEFSTSPISTPTH 172
             Y   P+PVEF  + I+   H
Sbjct: 65  VGYPRFPAPVEFIAAVIAYYVH 86


>gnl|CDD|86186 pfam02925, gpD, Bacteriophage scaffolding protein D. 
          Length = 141

 Score = 26.2 bits (57), Expect = 7.1
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 96  LLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFD--TY 153
           L++    L   + D DFL S  +   T  S     +  C+EA       C+ G  D   Y
Sbjct: 18  LIQASAVLDLTEDDFDFLTSNKVWIATDRS----RARRCVEA-------CVYGTLDFVGY 66

Query: 154 FDLPSPVEFSTSPISTPTH 172
              P+PVEF  + I+   H
Sbjct: 67  PRFPAPVEFIAAVIAYYVH 85


>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
          Length = 590

 Score = 26.6 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 18  PPDTIVTSS-----STLTSIDLNSRTTTSS 42
           PPD+I   S     S L+ I LN RT  S+
Sbjct: 425 PPDSIFNESDESLRSVLSEIRLNLRTGEST 454


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,835,419
Number of extensions: 730746
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 8
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)