RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8706
(186 letters)
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 92.8 bits (230), Expect = 4e-23
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRL 60
S L+ + + T+ + + T+S L DLN T S + F S+F L A++ +
Sbjct: 174 YSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN--TVKISDLAFKSNFKLTAKRQDMI 231
Query: 61 NCLVGYFDTYFDLPS---PVEFSTSPISTPTHWKQSIFLLKTPITLSK---VKQDMDFLH 114
N +V +FD F P PVEFST P + THWKQ+IF + ++ ++
Sbjct: 232 NGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSP 291
Query: 115 SKSLART 121
++ R
Sbjct: 292 NEKNNRD 298
Score = 73.2 bits (179), Expect = 6e-16
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 98 KTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLP 157
T S + D T S + F S F L A++ +N +V +FD F P
Sbjct: 193 NNVNTTSDKLIEFDL-------NTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAP 245
Query: 158 S---PVEFSTSPISTPTHWKQSIFLLKTPI 184
PVEFST P + THWKQ+IF +
Sbjct: 246 KGKRPVEFSTGPHAPYTHWKQTIFYFPDDL 275
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 87.0 bits (215), Expect = 8e-21
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRL 60
MS + + + + + P +VT++ + +D+ T + F+S FCL+ +++ +
Sbjct: 202 MSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIY--TVKVEDLTFTSPFCLQVKRNDYV 259
Query: 61 NCLVGYFDTYFD-LPSPVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
+ LV YF+ F FSTSP S THWKQ++F ++ +T+
Sbjct: 260 HALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKT 305
Score = 67.4 bits (164), Expect = 8e-14
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 73 LPSPVEFSTSPISTPTHWKQSIFLLKT--PITLSKVKQDM------DFLHSKSLA----- 119
P + I + I + +S +K D + K L
Sbjct: 170 FPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACL 229
Query: 120 ------RTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD-LPSPVEFSTSPISTPTH 172
T + F+SPFCL+ +++ ++ LV YF+ F FSTSP S TH
Sbjct: 230 IKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTH 289
Query: 173 WKQSIFLLKTPI 184
WKQ++F ++ +
Sbjct: 290 WKQTVFYMEDYL 301
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 84.7 bits (209), Expect = 5e-20
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRL 60
MS M + + + + L P T+++ + ID + TT+ S + FSS F L+ + +
Sbjct: 200 MSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCH--TTSISDLEFSSDFTLKITRTSMC 257
Query: 61 NCLVGYFDTYF--DLPSPVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
+ GYFD YF + + V FST P ST THWKQ++FLL+ P ++
Sbjct: 258 TAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKA 304
Score = 63.1 bits (153), Expect = 2e-12
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 120 RTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYF--DLPSPVEFSTSPISTPTHWKQSI 177
TT+ S + FSS F L+ + + + GYFD YF + + V FST P ST THWKQ++
Sbjct: 234 HTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTV 293
Query: 178 FLLKTPI 184
FLL+ P
Sbjct: 294 FLLEKPF 300
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 72.7 bits (178), Expect = 1e-15
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 13 QILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD 72
+ T ++ S T ++ F ++ L +FD F
Sbjct: 205 VVDTFDIRILMAKSVKYT-VNFLE-AKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFI 262
Query: 73 -LPSPVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
V ST+P THW Q L ++P+
Sbjct: 263 GSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKA 296
Score = 69.3 bits (169), Expect = 2e-14
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 113 LHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD-LPSPVEFSTSPISTPT 171
++ + PF ++ L +FD F V ST+P T
Sbjct: 220 KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLT 279
Query: 172 HWKQSIFLLKTPI 184
HW Q L ++P+
Sbjct: 280 HWYQVRCLFQSPL 292
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 72.9 bits (178), Expect = 1e-15
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 13 QILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFD 72
+ T ++ S T ++ F ++ L +FD F
Sbjct: 313 VVDTFDIRILMAKSVKYT-VNFLE-AKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFI 370
Query: 73 -LPSPVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
V ST+P THW Q L ++P+
Sbjct: 371 GSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKA 404
Score = 69.0 bits (168), Expect = 3e-14
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 113 LHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD-LPSPVEFSTSPISTPT 171
++ + PF ++ L +FD F V ST+P T
Sbjct: 328 KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLT 387
Query: 172 HWKQSIFLLKTPI 184
HW Q L ++P+
Sbjct: 388 HWYQVRCLFQSPL 400
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 69.5 bits (169), Expect = 2e-14
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 9 YSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLE--ARQDTRLNCLVGY 66
L P I+ + + + +D T + S + S + TRL G+
Sbjct: 227 IQTAMWNDLNPQQIIGTPTIVKEMDCL--TASVSEIEEVRSNVTSVINMEHTRLCGFGGW 284
Query: 67 FDTYFD------LPSPVEFSTSPISTP-THWKQSIFLLKTPITLSK 105
FD F +E +T+P THW Q +F++ PI + +
Sbjct: 285 FDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEE 330
Score = 56.0 bits (134), Expect = 7e-10
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 113 LHSKSLARTTTSSCVNFSSPF-CLEARQDTRLNCLVGYFDTYFD------LPSPVEFSTS 165
+ + S S + + TRL G+FD F +E +T+
Sbjct: 247 VKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTA 306
Query: 166 PISTP-THWKQSIFLLKTPI 184
P THW Q +F++ PI
Sbjct: 307 PSEQHCTHWGQQVFIMSNPI 326
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 48.9 bits (115), Expect = 2e-07
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 18 PPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVGYFDTYFDLPSPV 77
+ ++ + + + + +S+ S S ++ L GYFD L V
Sbjct: 602 KYIPLAETTKPVFTFEHPNFMNSSN--ERSDSIEFVMDRNADLMGFAGYFDL--QLYKTV 657
Query: 78 EFSTSPISTPTH---WKQSIFLLKTPITLSK 105
S P + W ++ L+ + + +
Sbjct: 658 MLSIEPSTHTPGMVSWFPAVIPLRDQLRVGE 688
Score = 47.3 bits (111), Expect = 9e-07
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 16/123 (13%)
Query: 66 YFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLKTPITLSKVKQDM-DFLHSKSLARTTTS 124
D + P + + + L I L++ + + F H +
Sbjct: 574 DEDEMWIQKYPQGHVRNNMDQIY-----VVYLSKYIPLAETTKPVFTFEHP-----NFMN 623
Query: 125 SCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTH---WKQSIFLLK 181
S S ++ L GYFD L V S P + W ++ L+
Sbjct: 624 SSNERSDSIEFVMDRNADLMGFAGYFDL--QLYKTVMLSIEPSTHTPGMVSWFPAVIPLR 681
Query: 182 TPI 184
+
Sbjct: 682 DQL 684
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 2e-04
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 100/224 (44%)
Query: 7 LIYSDVQILTLPPDTIVTSSSTLTSIDLNSRT--TT--SSCVNFSSS-----FCLEARQD 57
L+ +VQ ++ + +L+ + TT +F S+ L+
Sbjct: 248 LVLLNVQ-----------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 58 T-----RLNCLVGYFDT-YFDLPSPVEFSTSP-------------ISTPTHWKQ------ 92
T + L+ Y D DLP V +T+P ++T +WK
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 93 -----------------------SIFLLKTPI---TLSK---------VKQDMDFLHSKS 117
S+F I LS V ++ LH S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 118 LARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPVE 161
L +E + + Y +L +E
Sbjct: 416 L----------------VEKQPKES---TISIPSIYLELKVKLE 440
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.007
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 53/185 (28%)
Query: 8 IYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTT-SSCVNFSSSFCLEA--RQDTRLNCLV 64
I++ L DT + + L + +R S+S A + +L +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAI 159
Query: 65 ----GYFDTYFDLPSPVEFSTSPISTPTHWKQSIFLLKTPITLSKVKQDMDFLHS----- 115
G D YF+ E + ++ +T L D +
Sbjct: 160 FGGQGNTDDYFE-----EL------------RDLY--QTYHVLVG-----DLIKFSAETL 195
Query: 116 KSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPSPVEFSTSPISTPTHWKQ 175
L RTT + F+ + ++ + + + P + PIS P
Sbjct: 196 SELIRTTLDAEKVFTQGL------N-----ILEWLENPSNTPDKDYLLSIPISCPL---- 240
Query: 176 SIFLL 180
I ++
Sbjct: 241 -IGVI 244
Score = 31.9 bits (72), Expect = 0.11
Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 67/201 (33%)
Query: 1 MSVMTRLIYSDVQIL------TLPPDTIVTSSSTLTSIDL-NSRTTTSSCVNF------S 47
M ++ L VQ LP V I L N N
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQV-------EISLVNGAK------NLVVSGPPQ 384
Query: 48 S--SFCLEARQDTRLNCLVGYFDTY---FDLPSPVEFSTS--PISTPTHWKQSIFLLKTP 100
S L R + G D F FS P+++P H S L P
Sbjct: 385 SLYGLNLTLR---KAKAPSG-LDQSRIPFSERKLK-FSNRFLPVASPFH---SHLL--VP 434
Query: 101 ITLSKVKQDMDF----LHSKSLA----RTTTSSCVNFSSPFCLEARQDTRL-NCLVGYFD 151
+ + +D+ ++K + T S + L R+ +C++
Sbjct: 435 AS-DLINKDLVKNNVSFNAKDIQIPVYDTFDGS--DLRV---LSGSISERIVDCIIR--- 485
Query: 152 TYFDLPSPVEFSTSPISTPTH 172
PV++ T+ TH
Sbjct: 486 ------LPVKWETTTQFKATH 500
Score = 31.9 bits (72), Expect = 0.12
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 6 RLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRLNCLVG 65
R +Y L D I S+ TL+ + RTT + F+ + ++
Sbjct: 174 RDLYQTYH--VLVGDLIKFSAETLSEL---IRTTLDAEKVFTQGL------N-----ILE 217
Query: 66 YFDTYFDLPSPVEFSTSPISTPTHWKQSIFLL 97
+ + + P + PIS P I ++
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPL-----IGVI 244
>1tx9_A GPD, scaffolding protein D; assembly, conformational switching,
structural protein; 3.31A {Enterobacteria phage PHIX174}
SCOP: a.84.1.1 PDB: 1al0_1 1cd3_1 1m0f_1
Length = 151
Score = 27.0 bits (59), Expect = 2.4
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 93 SIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFD- 151
SI L++ L + D DFL S + T S + C+EA C+ G D
Sbjct: 16 SIKLIQASAVLDLTEDDFDFLTSNKVWIATDRS----RARRCVEA-------CVYGTLDF 64
Query: 152 -TYFDLPSPVEFSTSPISTPTH 172
Y P+PVEF + I+ H
Sbjct: 65 VGYPRFPAPVEFIAAVIAYYVH 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.395
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,563,735
Number of extensions: 126548
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 24
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)