RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8706
         (186 letters)



>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 316

 Score = 89.5 bits (221), Expect = 2e-22
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 1   MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRL 60
           MS +  +   +  +  + P  +VT++  +  +D+   T     + F+S FCL+ +++  +
Sbjct: 169 MSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIY--TVKVEDLTFTSPFCLQVKRNDYV 226

Query: 61  NCLVGYFDTYFDLP-SPVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
           + LV YF+  F        FSTSP S  THWKQ++F ++  +T+  
Sbjct: 227 HALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKT 272



 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 121 TTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLP-SPVEFSTSPISTPTHWKQSIFL 179
           T     + F+SPFCL+ +++  ++ LV YF+  F        FSTSP S  THWKQ++F 
Sbjct: 204 TVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFY 263

Query: 180 LKTPI 184
           ++  +
Sbjct: 264 MEDYL 268


>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 328

 Score = 84.5 bits (208), Expect = 2e-20
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 1   MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRL 60
            S    L+  +  + T+  + + T+S  L   DLN  T   S + F S+F L A++   +
Sbjct: 174 YSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN--TVKISDLAFKSNFKLTAKRQDMI 231

Query: 61  NCLVGYFDTYFDLPS---PVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
           N +V +FD  F  P    PVEFST P +  THWKQ+IF     +    
Sbjct: 232 NGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAET 279



 Score = 72.6 bits (177), Expect = 4e-16
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 120 RTTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFDLPS---PVEFSTSPISTPTHWKQS 176
            T   S + F S F L A++   +N +V +FD  F  P    PVEFST P +  THWKQ+
Sbjct: 208 NTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQT 267

Query: 177 IFLLKTPI 184
           IF     +
Sbjct: 268 IFYFPDDL 275


>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
           3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 82.6 bits (203), Expect = 8e-20
 Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 1   MSVMTRLIYSDVQILTLPPDTIVTSSSTLTSIDLNSRTTTSSCVNFSSSFCLEARQDTRL 60
           MS M + +  +  +  L P T+++    +  ID +  TT+ S + FSS F L+  + +  
Sbjct: 171 MSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCH--TTSISDLEFSSDFTLKITRTSMC 228

Query: 61  NCLVGYFDTYFD--LPSPVEFSTSPISTPTHWKQSIFLLKTPITLSK 105
             + GYFD YF+    + V FST P ST THWKQ++FLL+ P ++  
Sbjct: 229 TAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKA 275



 Score = 67.6 bits (164), Expect = 2e-14
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 121 TTTSSCVNFSSPFCLEARQDTRLNCLVGYFDTYFD--LPSPVEFSTSPISTPTHWKQSIF 178
           TT+ S + FSS F L+  + +    + GYFD YF+    + V FST P ST THWKQ++F
Sbjct: 206 TTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVF 265

Query: 179 LLKTPI 184
           LL+ P 
Sbjct: 266 LLEKPF 271


>d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of bacteriophage
           procapsid {Bacteriophage phi-X174 [TaxId: 10847]}
          Length = 138

 Score = 27.3 bits (60), Expect = 0.80
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 93  SIFLLKTPITLSKVKQDMDFLHSKSLARTTTSSCVNFSSPFCLEARQDTRLNCLVGYFD- 151
           SI L++    L   + D DFL S  +   T  S     +  C+EA       C+ G  D 
Sbjct: 11  SIKLIQASAVLDLTEDDFDFLTSNKVWIATDRS----RARRCVEA-------CVYGTLDF 59

Query: 152 -TYFDLPSPVEFSTSPISTPTH 172
             Y   P+PVEF  + I+   H
Sbjct: 60  VGYPRFPAPVEFIAAVIAYYVH 81


>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 128 NFS-SPFCLEARQDTRLNCLVGYFDTYFDLPSPVE 161
            FS  P  L    + R   L G  D YF   + +E
Sbjct: 666 TFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIE 700


>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 23.6 bits (51), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 100 PITLSKVKQDMDFLHSKSL 118
           PI +S VK++ DFL   ++
Sbjct: 41  PIDISLVKREHDFLDRDAI 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,863
Number of extensions: 25740
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 10
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)