BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8709
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 89/130 (68%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
IRTESY+ I N +F +K V+DVG GTGILS+F +++S+I Y+ +DII
Sbjct: 47 IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 106
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
R NK + I + +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A+N++L G
Sbjct: 107 RLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 166
Query: 304 VCPNRFTLSL 313
V P+ T+SL
Sbjct: 167 VYPDICTISL 176
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 89/130 (68%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RTESY+ I N +F +K V+DVG GTGILS+F +++S+I Y+ +DII
Sbjct: 28 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDII 87
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
R NK + I + +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A++++L G
Sbjct: 88 RLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGS 147
Query: 304 VCPNRFTLSL 313
V P+ T+SL
Sbjct: 148 VYPDICTISL 157
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y++++ +N+ LF +K V+DVG+GTGIL +F IE S I+ + I+
Sbjct: 49 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 108
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ NK D + + +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG+
Sbjct: 109 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 168
Query: 304 VCPNRFTL 311
+ P+R TL
Sbjct: 169 IFPDRATL 176
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y++++ +N+ LF +K V+DVG+GTGIL +F IE S I+ + I+
Sbjct: 43 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 102
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ NK D + + +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG+
Sbjct: 103 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 162
Query: 304 VCPNRFTL 311
+ P+R TL
Sbjct: 163 IFPDRATL 170
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y++++ +N+ LF +K V+DVG+GTGIL +F IE S I+ + I+
Sbjct: 40 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 99
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ NK D + + +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG+
Sbjct: 100 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 159
Query: 304 VCPNRFTL 311
+ P+R TL
Sbjct: 160 IFPDRATL 167
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y++++ +N+ LF +K V+DVG+GTGIL +F IE S I+ + I+
Sbjct: 53 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 112
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ NK D + + +E+VELPVE VDIIISEWMGY L +++M+++V+ AR+++L PDG+
Sbjct: 113 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGL 172
Query: 304 VCPNRFTL 311
+ P+R TL
Sbjct: 173 IFPDRATL 180
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 53/204 (25%)
Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFXXXXXX 171
YYF+SY+ IH EM++DTVRT SY++AI+ N LF +K V+DVG GTGILS+F
Sbjct: 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAA---- 57
Query: 172 XXXXXIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIE 231
K G KHVI V + I
Sbjct: 58 -------KHGA--------------------KHVIGVDMSSII----------------- 73
Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
++A E +++ N + +I + LEDV LP VDIIISEWMGYFLL+E+M+D+V+
Sbjct: 74 --EMAKELVEL---NGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVL 128
Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
AR+ +L G++ P++ ++ L G
Sbjct: 129 YARDHYLVEGGLIFPDKCSIHLAG 152
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+R ++Y +A+ NK F K V+DVG G+GIL+I+ +E + +A ++
Sbjct: 46 VRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALV 105
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ N D +EV +ED+ LP E VD+IISEWMGYFLL E+M DSVI AR+R+LKP GV
Sbjct: 106 KANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV 164
Query: 304 VCPNRFTLSLC 314
+ P+ + L
Sbjct: 165 MYPSHARMWLA 175
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT++Y+ IL N + K V+DVGAGTGILSIF +E S I + +++
Sbjct: 66 VRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVV 125
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
R N + ++ V +E VELP E VD I+SEWMGY LL E+M+ SV+ AR ++LK G+
Sbjct: 126 RFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGL 184
Query: 304 VCP 306
+ P
Sbjct: 185 LLP 187
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y+ AIL N + F +K V+DVG G+GILS F +E S +A ++
Sbjct: 141 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 200
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ N +I V +E+V LP E VDIIISE MGY L E M++S + A+ ++LKP G
Sbjct: 201 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 258
Query: 304 VCPN 307
+ P
Sbjct: 259 MFPT 262
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y+ AIL N + F +K V+DVG G+GILS F +E S +A ++
Sbjct: 33 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 92
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ N +I V +E+V LP E VDIIISE MGY L E M++S + A+ ++LKP G
Sbjct: 93 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 150
Query: 304 VCPN 307
+ P
Sbjct: 151 MFPT 154
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y+ AIL N + F +K V+DVG G+GILS F +E S +A ++
Sbjct: 28 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 87
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ N +I V +E+V LP E VDIIISE MGY L E M++S + A+ ++LKP G
Sbjct: 88 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 145
Query: 304 VCPN 307
+ P
Sbjct: 146 MFPT 149
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y+ AIL N + F +K V+DVG G+GILS F +E S +A ++
Sbjct: 24 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 83
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ N +I V +E+V LP E VDIIISE MGY L E M++S + A+ ++LKP G
Sbjct: 84 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 141
Query: 304 VCPN 307
+ P
Sbjct: 142 MFPT 145
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
+RT +Y+ AIL N + F +K V+DVG G+GILS F +E S +A ++
Sbjct: 29 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 88
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ N +I V +E+V LP E VDIIISE MGY L E M++S + A+ ++LKP G
Sbjct: 89 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 146
Query: 304 VCPN 307
+ P
Sbjct: 147 MFPT 150
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
+EK+ A T++ R ++ SQ+ V + + P E DII+SE +G F E +
Sbjct: 411 VEKNPNAVITLEGWRYEEWGSQVTVVSGDXREWKAP-EKADIIVSELLGSFGDNE-LSPE 468
Query: 290 VIDARNRFLKPDGVVCPNRFT 310
+D FLK DGV P +T
Sbjct: 469 CLDGAQHFLKDDGVSIPGEYT 489
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
+EK+ A T++ + ++ SQ+ V + + P E DII+SE +G F E +
Sbjct: 391 VEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNE-LSPE 448
Query: 290 VIDARNRFLKPDGVVCPNRFT 310
+D FLK DGV P +T
Sbjct: 449 CLDGAQHFLKDDGVSIPGEYT 469
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 199 LFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDIIRKNKYDSQIEVYHKL 258
L N V+D+G GTG S+F D + E +++ R+ + +E
Sbjct: 52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLV----DPSKEXLEVAREKGVKNVVEAKA-- 105
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
ED+ P + + +++ +G L + D R L PDG++
Sbjct: 106 -EDLPFPSGAFEAVLA--LGDVLSYVENKDKAFSEIRRVLVPDGLLI 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,720,961
Number of Sequences: 62578
Number of extensions: 262198
Number of successful extensions: 690
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 35
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)