Query psy8709
Match_columns 319
No_of_seqs 495 out of 2622
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:15:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499|consensus 100.0 3E-31 6.5E-36 242.6 12.9 159 107-318 19-177 (346)
2 KOG1500|consensus 99.9 1.8E-25 4E-30 201.8 12.5 157 108-319 137-293 (517)
3 COG2226 UbiE Methylase involve 99.8 1.4E-18 3E-23 154.5 11.6 117 187-307 37-155 (238)
4 PF12847 Methyltransf_18: Meth 99.8 4.2E-18 9E-23 134.5 11.9 108 201-309 1-112 (112)
5 PF05185 PRMT5: PRMT5 arginine 99.7 1.7E-17 3.6E-22 161.0 13.2 116 201-318 186-307 (448)
6 PF01209 Ubie_methyltran: ubiE 99.7 9.5E-18 2.1E-22 150.0 9.3 115 188-306 34-151 (233)
7 PF08241 Methyltransf_11: Meth 99.7 1.5E-16 3.2E-21 121.1 9.6 94 206-306 1-95 (95)
8 PLN02244 tocopherol O-methyltr 99.7 4.2E-16 9E-21 147.2 13.1 120 187-309 99-224 (340)
9 PLN02233 ubiquinone biosynthes 99.7 5.9E-16 1.3E-20 140.9 13.0 119 189-310 61-184 (261)
10 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.8E-16 3.9E-21 139.1 8.8 109 200-314 58-167 (243)
11 PF13847 Methyltransf_31: Meth 99.7 5.8E-16 1.3E-20 129.5 11.5 105 201-310 3-112 (152)
12 PRK11207 tellurite resistance 99.7 7.9E-16 1.7E-20 134.4 11.8 109 194-306 23-132 (197)
13 PRK15068 tRNA mo(5)U34 methylt 99.6 1.4E-15 3E-20 142.5 12.9 133 171-308 93-226 (322)
14 COG2230 Cfa Cyclopropane fatty 99.6 1.8E-15 3.8E-20 137.1 12.2 123 186-312 57-180 (283)
15 TIGR02752 MenG_heptapren 2-hep 99.6 2.2E-15 4.8E-20 134.4 12.8 118 187-308 31-151 (231)
16 TIGR00452 methyltransferase, p 99.6 1.5E-15 3.3E-20 141.1 11.9 134 171-309 92-226 (314)
17 PF02353 CMAS: Mycolic acid cy 99.6 1.6E-15 3.6E-20 138.5 11.8 123 185-312 46-170 (273)
18 PLN02396 hexaprenyldihydroxybe 99.6 1.2E-15 2.7E-20 142.3 10.3 108 200-311 130-238 (322)
19 TIGR00477 tehB tellurite resis 99.6 2.1E-15 4.5E-20 131.5 11.0 110 192-306 21-131 (195)
20 PRK11036 putative S-adenosyl-L 99.6 2E-15 4.4E-20 136.9 10.8 112 193-309 37-150 (255)
21 PF08003 Methyltransf_9: Prote 99.6 3.3E-15 7.2E-20 135.6 10.3 140 167-311 82-222 (315)
22 TIGR02469 CbiT precorrin-6Y C5 99.6 1.5E-14 3.3E-19 115.7 13.0 118 186-310 4-124 (124)
23 PF03848 TehB: Tellurite resis 99.6 8.8E-15 1.9E-19 126.3 11.9 111 193-308 22-133 (192)
24 PRK10258 biotin biosynthesis p 99.6 6.7E-15 1.4E-19 133.1 11.5 114 187-310 28-142 (251)
25 PTZ00098 phosphoethanolamine N 99.6 1.1E-14 2.4E-19 132.7 11.9 116 190-309 41-157 (263)
26 PRK00107 gidB 16S rRNA methylt 99.6 1.1E-14 2.5E-19 125.8 11.2 102 201-311 45-148 (187)
27 PF05175 MTS: Methyltransferas 99.6 1.4E-14 3E-19 123.6 11.5 114 192-307 22-139 (170)
28 TIGR00138 gidB 16S rRNA methyl 99.6 1.9E-14 4.1E-19 124.0 11.5 103 200-311 41-145 (181)
29 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.7E-14 3.6E-19 130.4 11.4 106 200-308 55-164 (247)
30 KOG1540|consensus 99.6 2.7E-14 5.9E-19 125.7 11.5 114 189-305 88-211 (296)
31 PRK14103 trans-aconitate 2-met 99.6 1.7E-14 3.6E-19 130.9 10.4 106 191-308 19-126 (255)
32 PRK10909 rsmD 16S rRNA m(2)G96 99.6 2.6E-14 5.6E-19 124.7 11.0 148 158-310 9-161 (199)
33 PF13659 Methyltransf_26: Meth 99.6 1.3E-14 2.9E-19 115.4 8.3 108 202-309 1-116 (117)
34 PRK12335 tellurite resistance 99.5 3.5E-14 7.7E-19 131.1 11.8 102 200-306 119-221 (287)
35 KOG1270|consensus 99.5 7.9E-15 1.7E-19 129.7 6.5 103 202-311 90-198 (282)
36 COG2242 CobL Precorrin-6B meth 99.5 1E-13 2.2E-18 117.7 12.6 123 182-312 15-139 (187)
37 PRK15001 SAM-dependent 23S rib 99.5 7.2E-14 1.6E-18 132.8 13.1 118 190-308 217-340 (378)
38 PRK11873 arsM arsenite S-adeno 99.5 5.2E-14 1.1E-18 128.8 11.8 106 199-308 75-183 (272)
39 PRK01683 trans-aconitate 2-met 99.5 5E-14 1.1E-18 127.8 11.4 111 189-309 19-131 (258)
40 PF13649 Methyltransf_25: Meth 99.5 3.1E-14 6.6E-19 110.8 8.3 95 205-302 1-101 (101)
41 COG4123 Predicted O-methyltran 99.5 3.8E-14 8.3E-19 126.3 9.5 110 201-310 44-172 (248)
42 PLN02336 phosphoethanolamine N 99.5 7.2E-14 1.6E-18 137.7 12.4 112 193-309 258-370 (475)
43 PRK00377 cbiT cobalt-precorrin 99.5 1.2E-13 2.7E-18 120.6 12.5 124 182-311 21-148 (198)
44 PF05401 NodS: Nodulation prot 99.5 4.6E-14 9.9E-19 120.9 9.3 110 195-309 37-147 (201)
45 TIGR00740 methyltransferase, p 99.5 8.4E-14 1.8E-18 125.1 11.5 106 201-309 53-162 (239)
46 PF06325 PrmA: Ribosomal prote 99.5 9.4E-14 2E-18 127.8 11.8 114 183-308 145-259 (295)
47 PRK08287 cobalt-precorrin-6Y C 99.5 2E-13 4.4E-18 118.1 13.2 118 182-308 12-131 (187)
48 PRK13944 protein-L-isoaspartat 99.5 1.7E-13 3.7E-18 120.4 12.6 115 186-309 57-174 (205)
49 COG2264 PrmA Ribosomal protein 99.5 9.9E-14 2.1E-18 126.8 11.0 117 183-308 146-263 (300)
50 TIGR00406 prmA ribosomal prote 99.5 3.1E-13 6.7E-18 124.8 14.1 101 201-309 159-260 (288)
51 PRK00121 trmB tRNA (guanine-N( 99.5 8.4E-14 1.8E-18 122.1 9.9 109 201-310 40-158 (202)
52 TIGR00537 hemK_rel_arch HemK-r 99.5 1.3E-13 2.8E-18 118.4 10.8 109 198-311 16-143 (179)
53 PRK08317 hypothetical protein; 99.5 2.9E-13 6.2E-18 120.4 13.3 119 187-310 5-126 (241)
54 smart00828 PKS_MT Methyltransf 99.5 1.1E-13 2.5E-18 122.8 10.5 103 203-309 1-105 (224)
55 PF13489 Methyltransf_23: Meth 99.5 9.8E-14 2.1E-18 116.0 8.6 107 190-311 10-118 (161)
56 TIGR01177 conserved hypothetic 99.5 2.8E-13 6.1E-18 127.4 12.2 122 187-310 168-296 (329)
57 PF03602 Cons_hypoth95: Conser 99.5 1.7E-13 3.8E-18 118.1 9.5 145 164-311 3-156 (183)
58 PRK14967 putative methyltransf 99.5 6.3E-13 1.4E-17 118.3 13.2 111 197-310 32-161 (223)
59 PRK13942 protein-L-isoaspartat 99.5 4.7E-13 1E-17 118.2 11.8 115 185-309 60-177 (212)
60 TIGR00080 pimt protein-L-isoas 99.5 6.9E-13 1.5E-17 117.3 12.3 114 187-310 63-179 (215)
61 PRK07402 precorrin-6B methylas 99.5 8.4E-13 1.8E-17 115.1 12.5 122 182-311 21-145 (196)
62 PF08242 Methyltransf_12: Meth 99.5 1.9E-14 4.1E-19 111.4 1.9 95 206-304 1-99 (99)
63 TIGR00536 hemK_fam HemK family 99.5 7.5E-13 1.6E-17 122.0 12.8 128 182-310 94-246 (284)
64 TIGR03533 L3_gln_methyl protei 99.5 1E-12 2.2E-17 121.2 13.5 125 185-310 104-253 (284)
65 PRK06922 hypothetical protein; 99.5 6.2E-13 1.4E-17 132.3 12.7 111 197-309 414-538 (677)
66 TIGR02072 BioC biotin biosynth 99.4 4.9E-13 1.1E-17 119.1 10.8 101 201-309 34-136 (240)
67 PLN03075 nicotianamine synthas 99.4 7.9E-12 1.7E-16 114.6 18.8 107 202-310 124-235 (296)
68 PRK00216 ubiE ubiquinone/menaq 99.4 7.7E-13 1.7E-17 117.9 12.0 116 190-308 40-158 (239)
69 PRK09489 rsmC 16S ribosomal RN 99.4 7.2E-13 1.6E-17 124.9 12.3 116 191-310 186-305 (342)
70 PLN02490 MPBQ/MSBQ methyltrans 99.4 6.4E-13 1.4E-17 124.6 11.6 115 186-307 97-214 (340)
71 TIGR02021 BchM-ChlM magnesium 99.4 9.8E-13 2.1E-17 116.6 11.8 119 187-310 39-160 (219)
72 TIGR00091 tRNA (guanine-N(7)-) 99.4 5.9E-13 1.3E-17 116.0 9.8 109 202-311 17-135 (194)
73 PRK11805 N5-glutamine S-adenos 99.4 1.5E-12 3.3E-17 121.2 13.1 106 203-309 135-264 (307)
74 PRK11705 cyclopropane fatty ac 99.4 1E-12 2.2E-17 125.8 12.3 116 187-310 153-269 (383)
75 PRK00517 prmA ribosomal protei 99.4 1.2E-12 2.6E-17 118.5 12.1 96 200-309 118-214 (250)
76 TIGR00095 RNA methyltransferas 99.4 7.9E-13 1.7E-17 114.7 10.3 147 160-310 7-161 (189)
77 COG2813 RsmC 16S RNA G1207 met 99.4 1.2E-12 2.5E-17 119.2 11.8 116 190-308 147-266 (300)
78 PLN02336 phosphoethanolamine N 99.4 9.1E-13 2E-17 129.9 12.0 116 190-310 26-144 (475)
79 KOG1271|consensus 99.4 5.2E-13 1.1E-17 112.0 8.7 127 186-312 48-185 (227)
80 TIGR03534 RF_mod_PrmC protein- 99.4 1.9E-12 4.1E-17 116.6 13.1 123 184-309 71-218 (251)
81 PRK05785 hypothetical protein; 99.4 8.6E-13 1.9E-17 117.7 10.0 90 201-302 51-141 (226)
82 KOG4300|consensus 99.4 6.7E-13 1.5E-17 113.5 8.7 101 203-307 78-181 (252)
83 COG4106 Tam Trans-aconitate me 99.4 5.3E-13 1.2E-17 114.9 7.9 113 192-314 21-135 (257)
84 PRK14966 unknown domain/N5-glu 99.4 2.9E-12 6.2E-17 122.4 13.3 124 182-309 234-382 (423)
85 PRK01544 bifunctional N5-gluta 99.4 2.2E-12 4.8E-17 127.7 12.6 127 182-309 95-270 (506)
86 PRK14968 putative methyltransf 99.4 4.1E-12 8.8E-17 109.3 12.2 111 199-311 21-151 (188)
87 PRK10901 16S rRNA methyltransf 99.4 3.2E-12 6.8E-17 124.4 12.8 120 192-313 235-377 (427)
88 TIGR00446 nop2p NOL1/NOP2/sun 99.4 2.7E-12 5.9E-17 117.1 11.3 116 197-313 67-204 (264)
89 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 4.2E-12 9.1E-17 112.0 11.9 114 189-308 27-143 (223)
90 TIGR03840 TMPT_Se_Te thiopurin 99.4 4.6E-12 1E-16 111.9 11.8 107 200-308 33-152 (213)
91 smart00138 MeTrc Methyltransfe 99.4 2.4E-12 5.3E-17 117.4 10.4 110 200-310 98-244 (264)
92 COG0742 N6-adenine-specific me 99.4 5.3E-12 1.1E-16 107.8 11.7 146 166-311 6-157 (187)
93 PRK00312 pcm protein-L-isoaspa 99.4 6.3E-12 1.4E-16 110.8 12.6 114 185-309 62-176 (212)
94 TIGR02716 C20_methyl_CrtF C-20 99.4 5.9E-12 1.3E-16 117.3 12.9 117 190-309 138-255 (306)
95 PRK09328 N5-glutamine S-adenos 99.4 7.4E-12 1.6E-16 114.5 13.2 125 183-309 90-239 (275)
96 PRK14901 16S rRNA methyltransf 99.4 4.3E-12 9.4E-17 123.7 12.0 122 191-313 242-389 (434)
97 PRK15128 23S rRNA m(5)C1962 me 99.4 3E-12 6.4E-17 122.9 10.4 115 200-314 219-345 (396)
98 TIGR00563 rsmB ribosomal RNA s 99.4 5E-12 1.1E-16 123.0 11.8 123 190-312 227-372 (426)
99 TIGR01983 UbiG ubiquinone bios 99.4 1.5E-11 3.2E-16 109.0 13.8 103 202-309 46-150 (224)
100 PRK14121 tRNA (guanine-N(7)-)- 99.4 6.3E-12 1.4E-16 119.3 11.8 111 199-310 120-237 (390)
101 PRK14904 16S rRNA methyltransf 99.3 7.7E-12 1.7E-16 122.3 12.5 116 195-312 244-381 (445)
102 TIGR03587 Pse_Me-ase pseudamin 99.3 6.6E-12 1.4E-16 110.2 10.8 98 200-307 42-141 (204)
103 PRK14903 16S rRNA methyltransf 99.3 6.8E-12 1.5E-16 122.0 11.7 120 193-313 229-371 (431)
104 COG2890 HemK Methylase of poly 99.3 1.2E-11 2.5E-16 113.7 12.3 125 181-309 91-239 (280)
105 COG2518 Pcm Protein-L-isoaspar 99.3 1E-11 2.2E-16 107.8 11.1 114 185-309 56-170 (209)
106 PRK04266 fibrillarin; Provisio 99.3 1.6E-11 3.4E-16 109.4 12.1 103 196-307 67-175 (226)
107 PRK14902 16S rRNA methyltransf 99.3 1E-11 2.3E-16 121.4 11.9 120 192-313 241-384 (444)
108 TIGR03704 PrmC_rel_meth putati 99.3 1.9E-11 4E-16 110.8 12.6 124 183-310 67-218 (251)
109 PRK11783 rlmL 23S rRNA m(2)G24 99.3 6.5E-12 1.4E-16 129.0 10.5 113 201-313 538-661 (702)
110 PRK05134 bifunctional 3-demeth 99.3 1.8E-11 3.9E-16 109.4 11.6 113 191-309 38-152 (233)
111 PRK13255 thiopurine S-methyltr 99.3 2.4E-11 5.1E-16 107.7 12.1 102 199-305 35-152 (218)
112 PRK11088 rrmA 23S rRNA methylt 99.3 9.6E-12 2.1E-16 114.0 9.8 93 201-309 85-182 (272)
113 smart00650 rADc Ribosomal RNA 99.3 1.5E-11 3.2E-16 104.7 10.0 111 191-309 3-114 (169)
114 cd02440 AdoMet_MTases S-adenos 99.3 4.1E-11 8.8E-16 91.0 10.5 101 204-307 1-103 (107)
115 PF01135 PCMT: Protein-L-isoas 99.3 2.2E-11 4.7E-16 107.1 10.0 116 184-309 55-173 (209)
116 PRK07580 Mg-protoporphyrin IX 99.3 3.8E-11 8.3E-16 106.7 11.7 102 200-306 62-164 (230)
117 TIGR03438 probable methyltrans 99.2 7.2E-11 1.6E-15 109.7 12.5 109 201-310 63-179 (301)
118 PRK06202 hypothetical protein; 99.2 4.3E-11 9.4E-16 107.0 10.7 101 200-307 59-165 (232)
119 PLN02781 Probable caffeoyl-CoA 99.2 3.9E-11 8.5E-16 107.5 10.0 109 197-311 64-181 (234)
120 KOG2904|consensus 99.2 8.8E-11 1.9E-15 104.6 11.7 128 182-309 126-286 (328)
121 PHA03412 putative methyltransf 99.2 5.3E-11 1.1E-15 105.5 9.8 101 201-308 49-163 (241)
122 PRK13943 protein-L-isoaspartat 99.2 1.1E-10 2.3E-15 109.1 12.3 111 187-307 66-179 (322)
123 PRK11188 rrmJ 23S rRNA methylt 99.2 5.9E-11 1.3E-15 104.6 9.9 99 199-308 49-165 (209)
124 PRK13168 rumA 23S rRNA m(5)U19 99.2 8E-11 1.7E-15 115.1 11.7 116 186-310 282-402 (443)
125 PLN02585 magnesium protoporphy 99.2 9.7E-11 2.1E-15 109.2 11.4 99 201-305 144-247 (315)
126 KOG1501|consensus 99.2 3.8E-11 8.3E-16 112.7 8.4 149 123-318 35-185 (636)
127 TIGR00438 rrmJ cell division p 99.2 9.3E-11 2E-15 101.5 10.0 104 194-308 25-146 (188)
128 PRK04457 spermidine synthase; 99.2 1.1E-10 2.3E-15 106.5 10.4 110 200-309 65-178 (262)
129 COG2519 GCD14 tRNA(1-methylade 99.2 1.5E-10 3.2E-15 102.8 10.8 111 192-311 85-198 (256)
130 PRK00811 spermidine synthase; 99.2 1.2E-10 2.5E-15 107.4 10.6 112 201-312 76-195 (283)
131 PHA03411 putative methyltransf 99.2 1.4E-10 3.1E-15 105.0 9.9 100 201-307 64-182 (279)
132 KOG2899|consensus 99.2 5E-11 1.1E-15 104.4 6.7 154 143-310 53-211 (288)
133 PF03291 Pox_MCEL: mRNA cappin 99.2 2.8E-10 6E-15 106.8 12.0 110 201-310 62-188 (331)
134 PTZ00146 fibrillarin; Provisio 99.2 2.8E-10 6E-15 104.1 11.6 113 187-307 115-236 (293)
135 COG1092 Predicted SAM-dependen 99.2 1.2E-10 2.7E-15 110.7 9.6 114 202-315 218-343 (393)
136 PRK03522 rumB 23S rRNA methylu 99.2 2.1E-10 4.4E-15 107.4 10.6 117 187-311 159-277 (315)
137 COG2263 Predicted RNA methylas 99.1 4E-10 8.7E-15 95.7 11.1 80 196-280 40-120 (198)
138 PF10672 Methyltrans_SAM: S-ad 99.1 1.4E-10 3E-15 106.3 8.7 114 201-314 123-244 (286)
139 COG1041 Predicted DNA modifica 99.1 4.7E-10 1E-14 104.1 11.3 121 187-309 183-311 (347)
140 PLN02672 methionine S-methyltr 99.1 6.1E-10 1.3E-14 117.4 12.9 127 183-310 99-280 (1082)
141 PF01596 Methyltransf_3: O-met 99.1 5.9E-10 1.3E-14 97.8 10.4 115 192-312 36-159 (205)
142 PLN02476 O-methyltransferase 99.1 7E-10 1.5E-14 101.2 10.9 114 191-310 108-230 (278)
143 COG4076 Predicted RNA methylas 99.1 2.1E-10 4.6E-15 96.9 6.3 109 203-316 34-143 (252)
144 PF01170 UPF0020: Putative RNA 99.1 2E-09 4.3E-14 92.6 12.5 124 185-308 12-151 (179)
145 TIGR02081 metW methionine bios 99.1 4E-10 8.7E-15 98.0 8.2 90 201-301 13-105 (194)
146 KOG1975|consensus 99.1 4.9E-10 1.1E-14 101.9 8.6 124 187-310 100-239 (389)
147 TIGR00479 rumA 23S rRNA (uraci 99.1 8.3E-10 1.8E-14 107.6 10.7 115 186-308 277-396 (431)
148 PF10294 Methyltransf_16: Puta 99.1 1.6E-09 3.5E-14 92.6 11.0 110 197-309 41-157 (173)
149 TIGR02085 meth_trns_rumB 23S r 99.0 9.9E-10 2.1E-14 105.1 10.6 115 187-309 219-335 (374)
150 PF07021 MetW: Methionine bios 99.0 6.2E-10 1.3E-14 95.3 8.1 98 200-311 12-112 (193)
151 KOG1541|consensus 99.0 7.7E-10 1.7E-14 95.8 8.7 115 187-308 34-160 (270)
152 PF08704 GCD14: tRNA methyltra 99.0 1.8E-09 4E-14 97.0 11.2 112 191-310 30-148 (247)
153 KOG3010|consensus 99.0 2.2E-10 4.7E-15 100.5 5.0 97 204-305 36-134 (261)
154 PRK13256 thiopurine S-methyltr 99.0 1.6E-09 3.4E-14 96.2 10.5 107 200-308 42-163 (226)
155 PF02475 Met_10: Met-10+ like- 99.0 2.2E-09 4.7E-14 93.6 10.7 124 172-305 72-199 (200)
156 COG4122 Predicted O-methyltran 99.0 1.8E-09 3.8E-14 95.1 10.1 116 191-312 49-170 (219)
157 PLN02366 spermidine synthase 99.0 2.1E-09 4.5E-14 99.9 10.9 114 200-313 90-211 (308)
158 COG4976 Predicted methyltransf 99.0 8.9E-11 1.9E-15 102.1 1.5 112 190-311 114-228 (287)
159 PF02390 Methyltransf_4: Putat 99.0 2.1E-09 4.5E-14 93.7 9.8 105 203-308 19-133 (195)
160 TIGR00417 speE spermidine synt 99.0 2.8E-09 6E-14 97.6 10.0 114 200-313 71-191 (270)
161 PRK03612 spermidine synthase; 99.0 1.5E-09 3.2E-14 108.1 8.4 114 200-313 296-420 (521)
162 PTZ00338 dimethyladenosine tra 99.0 2.3E-09 5E-14 99.1 9.0 92 186-280 21-113 (294)
163 PRK14896 ksgA 16S ribosomal RN 99.0 3E-09 6.6E-14 96.7 9.2 89 186-280 14-103 (258)
164 PF05724 TPMT: Thiopurine S-me 98.9 4.5E-09 9.7E-14 93.1 9.2 107 197-305 33-152 (218)
165 PLN02232 ubiquinone biosynthes 98.9 2.8E-09 6.1E-14 90.0 7.6 79 228-309 1-82 (160)
166 PRK00274 ksgA 16S ribosomal RN 98.9 2.9E-09 6.2E-14 97.6 8.0 88 187-279 28-116 (272)
167 PF05891 Methyltransf_PK: AdoM 98.9 2.5E-09 5.4E-14 93.3 7.1 103 202-306 56-159 (218)
168 PRK01581 speE spermidine synth 98.9 4.7E-09 1E-13 98.6 9.4 114 199-312 148-272 (374)
169 PLN02589 caffeoyl-CoA O-methyl 98.9 9.3E-09 2E-13 92.6 10.2 109 197-311 75-193 (247)
170 COG2521 Predicted archaeal met 98.9 1.4E-09 2.9E-14 95.1 4.2 109 197-305 130-242 (287)
171 PRK04338 N(2),N(2)-dimethylgua 98.9 1.1E-08 2.4E-13 97.9 10.1 116 187-310 42-160 (382)
172 PRK11933 yebU rRNA (cytosine-C 98.9 2E-08 4.3E-13 98.3 11.7 114 198-312 110-246 (470)
173 PF00891 Methyltransf_2: O-met 98.8 2E-08 4.4E-13 90.2 10.3 108 191-309 90-200 (241)
174 PRK11727 23S rRNA mA1618 methy 98.8 2.9E-08 6.3E-13 92.6 11.0 80 201-280 114-201 (321)
175 COG0220 Predicted S-adenosylme 98.8 2E-08 4.3E-13 89.3 9.3 105 203-308 50-164 (227)
176 COG0116 Predicted N6-adenine-s 98.8 6.4E-08 1.4E-12 91.2 12.8 130 182-311 172-347 (381)
177 COG2520 Predicted methyltransf 98.8 2.2E-08 4.9E-13 93.5 9.6 130 173-309 160-290 (341)
178 PRK05031 tRNA (uracil-5-)-meth 98.8 2.3E-08 5E-13 95.3 9.9 114 186-310 192-322 (362)
179 TIGR00755 ksgA dimethyladenosi 98.8 5.3E-08 1.2E-12 88.3 11.3 88 186-279 14-105 (253)
180 TIGR02143 trmA_only tRNA (urac 98.8 3.3E-08 7.1E-13 93.9 10.0 113 187-310 184-313 (353)
181 KOG2361|consensus 98.7 2E-08 4.3E-13 88.4 5.3 103 204-309 74-184 (264)
182 KOG3191|consensus 98.7 1E-07 2.2E-12 80.4 9.2 106 202-310 44-170 (209)
183 COG3963 Phospholipid N-methylt 98.7 1.2E-07 2.7E-12 78.9 9.5 116 183-305 30-153 (194)
184 KOG0820|consensus 98.7 7.5E-08 1.6E-12 86.0 8.7 90 187-279 44-134 (315)
185 COG2265 TrmA SAM-dependent met 98.7 6.8E-08 1.5E-12 93.7 8.9 120 183-310 275-398 (432)
186 KOG3420|consensus 98.7 5.1E-08 1.1E-12 79.3 6.5 89 189-279 36-125 (185)
187 KOG2940|consensus 98.6 3.3E-08 7.2E-13 86.2 4.9 98 203-306 74-172 (325)
188 PF05148 Methyltransf_8: Hypot 98.6 6.4E-08 1.4E-12 83.9 6.1 103 187-313 61-163 (219)
189 PF02527 GidB: rRNA small subu 98.6 4.7E-07 1E-11 78.0 11.5 97 204-309 51-149 (184)
190 TIGR00478 tly hemolysin TlyA f 98.6 1.1E-07 2.3E-12 84.8 7.6 96 192-305 65-168 (228)
191 PLN02823 spermine synthase 98.6 2.1E-07 4.6E-12 87.5 9.7 110 201-310 103-222 (336)
192 COG0030 KsgA Dimethyladenosine 98.6 1.9E-07 4.1E-12 84.2 8.6 90 187-280 16-107 (259)
193 PF06080 DUF938: Protein of un 98.6 3.2E-07 6.9E-12 79.7 9.6 102 204-306 28-139 (204)
194 PF01739 CheR: CheR methyltran 98.6 5.8E-07 1.2E-11 78.3 10.7 109 201-310 31-177 (196)
195 PRK11783 rlmL 23S rRNA m(2)G24 98.6 5.4E-07 1.2E-11 92.9 12.3 127 183-309 171-348 (702)
196 KOG1661|consensus 98.6 2E-07 4.3E-12 80.4 7.4 113 186-307 65-192 (237)
197 PF12147 Methyltransf_20: Puta 98.5 1.3E-06 2.8E-11 79.3 12.7 131 182-312 112-253 (311)
198 PRK01544 bifunctional N5-gluta 98.5 2.8E-07 6.1E-12 91.5 9.3 108 201-309 347-463 (506)
199 KOG3045|consensus 98.5 1.7E-07 3.7E-12 83.2 6.1 91 200-313 179-269 (325)
200 PF02384 N6_Mtase: N-6 DNA Met 98.5 4.5E-07 9.7E-12 84.6 9.2 125 183-307 28-182 (311)
201 KOG1663|consensus 98.5 1.1E-06 2.3E-11 77.1 10.8 119 189-313 61-188 (237)
202 TIGR00308 TRM1 tRNA(guanine-26 98.5 3.9E-07 8.5E-12 86.9 8.7 100 203-310 46-149 (374)
203 PRK10611 chemotaxis methyltran 98.5 2.2E-07 4.8E-12 85.5 6.7 107 203-310 117-264 (287)
204 PF09445 Methyltransf_15: RNA 98.5 2.9E-07 6.4E-12 77.5 6.8 74 204-278 2-79 (163)
205 PF05958 tRNA_U5-meth_tr: tRNA 98.5 3.8E-07 8.3E-12 86.6 8.4 95 184-281 180-291 (352)
206 PF05219 DREV: DREV methyltran 98.5 6.5E-07 1.4E-11 80.1 9.3 94 201-308 94-188 (265)
207 COG0144 Sun tRNA and rRNA cyto 98.5 1.2E-06 2.5E-11 83.4 11.3 118 195-313 150-293 (355)
208 PF03141 Methyltransf_29: Puta 98.5 1.2E-07 2.5E-12 91.7 3.8 120 187-312 99-223 (506)
209 PRK04148 hypothetical protein; 98.4 2E-06 4.3E-11 70.0 10.1 79 188-275 3-84 (134)
210 COG0421 SpeE Spermidine syntha 98.4 1E-06 2.2E-11 80.8 9.4 112 203-315 78-197 (282)
211 PRK00536 speE spermidine synth 98.4 1.6E-06 3.4E-11 78.8 10.1 103 200-314 71-177 (262)
212 PF01564 Spermine_synth: Sperm 98.4 4.4E-07 9.5E-12 82.0 6.1 112 201-312 76-195 (246)
213 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 1.3E-06 2.8E-11 80.5 8.1 117 196-313 80-224 (283)
214 KOG2915|consensus 98.4 2.7E-06 5.9E-11 76.2 9.6 107 191-305 95-207 (314)
215 COG3897 Predicted methyltransf 98.3 1E-06 2.3E-11 75.3 6.1 108 187-303 65-173 (218)
216 COG1352 CheR Methylase of chem 98.3 4.1E-06 9E-11 76.2 9.9 107 202-309 97-242 (268)
217 TIGR02987 met_A_Alw26 type II 98.3 3.1E-06 6.7E-11 84.7 9.6 114 201-315 31-203 (524)
218 KOG0822|consensus 98.3 2.6E-06 5.7E-11 82.4 8.0 114 203-318 369-488 (649)
219 COG2242 CobL Precorrin-6B meth 98.3 2E-05 4.3E-10 67.4 12.2 119 125-249 16-154 (187)
220 PF06325 PrmA: Ribosomal prote 98.2 2.4E-06 5.3E-11 78.9 7.0 55 135-191 150-204 (295)
221 PF07942 N2227: N2227-like pro 98.2 1.1E-05 2.3E-10 73.4 10.8 101 201-305 56-199 (270)
222 COG0357 GidB Predicted S-adeno 98.2 5.9E-06 1.3E-10 72.7 8.7 95 202-305 68-165 (215)
223 PRK00050 16S rRNA m(4)C1402 me 98.2 3E-06 6.5E-11 78.3 7.2 85 189-276 7-98 (296)
224 PF00398 RrnaAD: Ribosomal RNA 98.2 4E-06 8.6E-11 76.5 7.9 91 185-279 14-108 (262)
225 KOG2187|consensus 98.2 4.4E-06 9.5E-11 80.9 8.2 121 184-312 366-493 (534)
226 PF04816 DUF633: Family of unk 98.2 1.1E-05 2.4E-10 70.7 10.0 98 205-307 1-100 (205)
227 PF08123 DOT1: Histone methyla 98.2 8.4E-06 1.8E-10 71.5 8.9 114 188-305 29-155 (205)
228 PF01728 FtsJ: FtsJ-like methy 98.1 4.3E-06 9.4E-11 71.7 6.3 96 201-307 23-138 (181)
229 KOG2730|consensus 98.1 3E-06 6.6E-11 73.7 5.2 76 201-277 94-174 (263)
230 COG2264 PrmA Ribosomal protein 98.1 2.1E-06 4.5E-11 78.9 4.5 44 146-189 160-203 (300)
231 COG0500 SmtA SAM-dependent met 98.1 3.3E-05 7.1E-10 61.6 10.9 102 205-312 52-159 (257)
232 PF13578 Methyltransf_24: Meth 98.1 2.4E-06 5.2E-11 66.6 3.1 99 206-308 1-105 (106)
233 KOG1331|consensus 98.1 3.8E-06 8.3E-11 75.9 4.2 95 202-306 46-141 (293)
234 COG0293 FtsJ 23S rRNA methylas 98.0 3E-05 6.5E-10 67.5 9.5 98 199-307 43-158 (205)
235 PRK11760 putative 23S rRNA C24 98.0 2.8E-05 6.1E-10 72.6 9.3 88 199-301 209-296 (357)
236 KOG1122|consensus 98.0 3.8E-05 8.2E-10 72.8 10.2 115 197-313 237-376 (460)
237 KOG1269|consensus 98.0 7.7E-06 1.7E-10 77.6 5.7 104 200-306 109-213 (364)
238 KOG3178|consensus 98.0 1.4E-05 3.1E-10 74.3 6.9 97 203-309 179-276 (342)
239 PF05971 Methyltransf_10: Prot 98.0 3.6E-05 7.8E-10 70.9 9.2 95 186-281 82-190 (299)
240 KOG1709|consensus 98.0 4.9E-05 1.1E-09 66.1 8.8 100 200-306 100-204 (271)
241 PF03059 NAS: Nicotianamine sy 97.9 8.1E-05 1.8E-09 68.0 10.8 106 203-310 122-232 (276)
242 PF01269 Fibrillarin: Fibrilla 97.9 0.0001 2.2E-09 64.7 10.9 114 187-308 56-178 (229)
243 PRK10742 putative methyltransf 97.9 6.4E-05 1.4E-09 67.4 8.5 89 191-280 76-176 (250)
244 PF13679 Methyltransf_32: Meth 97.9 4.2E-05 9.1E-10 63.1 6.9 74 200-274 24-105 (141)
245 COG2263 Predicted RNA methylas 97.8 3.5E-05 7.6E-10 65.8 5.9 44 143-186 40-83 (198)
246 PF11968 DUF3321: Putative met 97.8 4.5E-05 9.7E-10 66.7 6.5 101 186-303 32-139 (219)
247 PF09243 Rsm22: Mitochondrial 97.8 0.00014 3E-09 66.8 10.0 118 190-310 22-142 (274)
248 COG4262 Predicted spermidine s 97.8 0.00011 2.4E-09 68.5 9.0 114 202-315 290-414 (508)
249 TIGR03439 methyl_EasF probable 97.8 0.00019 4.1E-09 67.1 10.8 105 201-307 76-196 (319)
250 PF04672 Methyltransf_19: S-ad 97.8 0.00017 3.6E-09 65.4 9.4 109 203-313 70-195 (267)
251 TIGR01444 fkbM_fam methyltrans 97.8 8.8E-05 1.9E-09 60.7 7.0 57 204-261 1-59 (143)
252 COG1189 Predicted rRNA methyla 97.7 0.00012 2.5E-09 64.9 7.9 107 188-306 66-176 (245)
253 PTZ00357 methyltransferase; Pr 97.7 0.00025 5.5E-09 71.0 9.9 115 203-318 702-852 (1072)
254 COG2384 Predicted SAM-dependen 97.7 0.00027 5.9E-09 61.8 8.8 92 203-299 18-111 (226)
255 KOG4058|consensus 97.5 0.00065 1.4E-08 55.8 8.6 110 189-306 60-170 (199)
256 COG1889 NOP1 Fibrillarin-like 97.5 0.00086 1.9E-08 58.0 9.7 113 187-307 59-179 (231)
257 KOG3201|consensus 97.5 0.00019 4.1E-09 59.8 5.0 122 185-309 13-141 (201)
258 KOG4589|consensus 97.5 0.00056 1.2E-08 58.4 7.7 98 199-307 67-183 (232)
259 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00031 6.6E-09 63.6 6.6 108 200-307 55-198 (256)
260 PF06962 rRNA_methylase: Putat 97.4 0.00057 1.2E-08 56.0 7.4 83 226-309 1-93 (140)
261 KOG2352|consensus 97.4 0.00063 1.4E-08 66.0 8.3 103 204-308 51-161 (482)
262 PF04445 SAM_MT: Putative SAM- 97.4 0.0006 1.3E-08 60.7 7.2 87 193-280 65-163 (234)
263 TIGR00006 S-adenosyl-methyltra 97.3 0.0011 2.3E-08 61.6 8.7 86 189-276 8-100 (305)
264 TIGR00452 methyltransferase, p 97.3 0.00063 1.4E-08 63.6 7.2 66 119-184 92-157 (314)
265 KOG1499|consensus 97.3 0.0002 4.4E-09 66.7 3.4 31 153-183 65-95 (346)
266 KOG2899|consensus 97.2 0.00039 8.5E-09 61.6 4.4 47 199-245 56-104 (288)
267 PF12847 Methyltransf_18: Meth 97.2 0.00043 9.2E-09 53.9 4.1 39 148-186 1-40 (112)
268 COG2227 UbiG 2-polyprenyl-3-me 97.2 0.00038 8.3E-09 61.8 3.9 43 147-190 58-100 (243)
269 KOG2671|consensus 97.2 0.00048 1E-08 63.9 4.6 111 195-306 202-352 (421)
270 TIGR00478 tly hemolysin TlyA f 97.2 0.00084 1.8E-08 59.9 6.1 46 137-182 64-109 (228)
271 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0018 3.9E-08 62.1 8.2 102 203-311 51-157 (377)
272 KOG2798|consensus 97.1 0.0022 4.7E-08 59.0 7.9 100 202-305 151-293 (369)
273 COG4798 Predicted methyltransf 97.0 0.0017 3.8E-08 55.7 6.5 116 193-310 40-168 (238)
274 KOG1500|consensus 97.0 0.00053 1.2E-08 63.4 3.3 37 153-189 182-218 (517)
275 KOG2198|consensus 96.9 0.0049 1.1E-07 58.0 9.0 115 197-312 151-300 (375)
276 PRK08287 cobalt-precorrin-6Y C 96.9 0.034 7.4E-07 47.7 13.8 56 125-185 13-69 (187)
277 TIGR00138 gidB 16S rRNA methyl 96.9 0.0017 3.6E-08 55.9 5.4 38 147-184 41-79 (181)
278 PF01861 DUF43: Protein of unk 96.9 0.016 3.5E-07 51.7 11.6 124 178-309 19-150 (243)
279 PHA01634 hypothetical protein 96.9 0.0039 8.5E-08 50.0 6.6 71 201-275 28-99 (156)
280 TIGR00406 prmA ribosomal prote 96.9 0.0011 2.4E-08 61.2 4.2 41 146-186 157-197 (288)
281 PRK15068 tRNA mo(5)U34 methylt 96.8 0.0019 4.1E-08 60.7 5.7 44 141-184 115-158 (322)
282 KOG1270|consensus 96.8 0.0019 4.1E-08 58.1 5.0 44 146-190 87-130 (282)
283 PF08003 Methyltransf_9: Prote 96.8 0.0022 4.8E-08 59.1 5.2 54 141-194 108-161 (315)
284 PRK00517 prmA ribosomal protei 96.8 0.0013 2.9E-08 59.4 3.8 41 146-186 117-157 (250)
285 PRK07402 precorrin-6B methylas 96.7 0.054 1.2E-06 46.9 13.7 42 144-185 36-78 (196)
286 KOG3987|consensus 96.7 0.00061 1.3E-08 59.1 1.3 92 203-308 114-207 (288)
287 PF03141 Methyltransf_29: Puta 96.7 0.0019 4.1E-08 63.1 4.6 101 203-309 367-468 (506)
288 COG0286 HsdM Type I restrictio 96.7 0.013 2.9E-07 58.2 10.6 122 183-304 168-322 (489)
289 PF07091 FmrO: Ribosomal RNA m 96.7 0.014 3.1E-07 52.3 9.4 120 186-315 92-215 (251)
290 PRK00377 cbiT cobalt-precorrin 96.6 0.0048 1E-07 53.6 6.2 56 125-185 22-79 (198)
291 KOG1227|consensus 96.6 0.0013 2.7E-08 60.1 2.2 73 202-275 195-269 (351)
292 PF04989 CmcI: Cephalosporin h 96.5 0.008 1.7E-07 52.5 7.0 103 201-309 32-148 (206)
293 COG3897 Predicted methyltransf 96.5 0.0013 2.7E-08 56.7 2.0 49 134-182 65-113 (218)
294 PLN02396 hexaprenyldihydroxybe 96.5 0.0065 1.4E-07 57.1 6.8 40 146-186 129-168 (322)
295 KOG3420|consensus 96.5 0.002 4.2E-08 52.9 2.8 51 136-186 36-86 (185)
296 PF05175 MTS: Methyltransferas 96.5 0.0061 1.3E-07 51.7 6.1 50 133-186 20-70 (170)
297 TIGR02021 BchM-ChlM magnesium 96.5 0.0062 1.3E-07 53.7 6.2 39 146-185 53-91 (219)
298 KOG1596|consensus 96.4 0.011 2.4E-07 52.5 7.2 107 195-309 150-262 (317)
299 PF07757 AdoMet_MTase: Predict 96.4 0.028 6E-07 43.8 8.4 31 203-234 60-90 (112)
300 PF03492 Methyltransf_7: SAM d 96.3 0.022 4.7E-07 53.9 9.2 110 199-309 14-184 (334)
301 PF10294 Methyltransf_16: Puta 96.3 0.035 7.6E-07 47.3 9.6 84 143-232 40-128 (173)
302 KOG3115|consensus 96.3 0.011 2.5E-07 51.2 6.4 106 203-308 62-183 (249)
303 TIGR00095 RNA methyltransferas 96.3 0.0057 1.2E-07 53.0 4.6 40 146-185 47-86 (189)
304 PRK00107 gidB 16S rRNA methylt 96.3 0.012 2.7E-07 50.8 6.6 39 148-186 45-84 (187)
305 PF13659 Methyltransf_26: Meth 96.2 0.0051 1.1E-07 48.2 3.8 37 149-185 1-37 (117)
306 COG5459 Predicted rRNA methyla 96.2 0.01 2.2E-07 55.5 6.1 107 198-307 110-224 (484)
307 TIGR00477 tehB tellurite resis 96.2 0.005 1.1E-07 53.5 3.9 40 145-185 27-66 (195)
308 PRK00274 ksgA 16S ribosomal RN 96.1 0.01 2.2E-07 54.4 5.6 41 144-185 38-78 (272)
309 COG0275 Predicted S-adenosylme 96.1 0.033 7.2E-07 51.2 8.5 87 187-275 9-103 (314)
310 KOG1253|consensus 96.0 0.0044 9.6E-08 60.2 2.9 106 201-313 109-221 (525)
311 PF13847 Methyltransf_31: Meth 96.0 0.011 2.3E-07 49.0 4.7 39 148-186 3-43 (152)
312 TIGR02469 CbiT precorrin-6Y C5 96.0 0.02 4.4E-07 44.9 6.1 41 144-184 15-56 (124)
313 PF11599 AviRa: RRNA methyltra 96.0 0.14 3.1E-06 44.9 11.5 121 187-307 37-213 (246)
314 PF01795 Methyltransf_5: MraW 95.9 0.015 3.4E-07 54.0 6.0 86 189-276 8-101 (310)
315 smart00650 rADc Ribosomal RNA 95.9 0.014 3.1E-07 49.3 5.3 39 143-182 8-46 (169)
316 KOG1099|consensus 95.9 0.014 3E-07 51.6 5.0 92 203-305 43-160 (294)
317 PRK14896 ksgA 16S ribosomal RN 95.9 0.018 3.8E-07 52.4 5.9 46 138-184 19-64 (258)
318 PF06859 Bin3: Bicoid-interact 95.8 0.0067 1.4E-07 47.5 2.6 43 268-310 1-46 (110)
319 PRK14967 putative methyltransf 95.8 0.017 3.7E-07 51.1 5.5 41 145-185 33-73 (223)
320 PLN02668 indole-3-acetate carb 95.8 0.055 1.2E-06 51.9 9.2 53 256-308 150-237 (386)
321 COG3129 Predicted SAM-dependen 95.8 0.024 5.3E-07 50.1 6.1 79 201-280 78-165 (292)
322 TIGR00537 hemK_rel_arch HemK-r 95.7 0.01 2.2E-07 50.6 3.7 40 146-186 17-56 (179)
323 PRK10909 rsmD 16S rRNA m(2)G96 95.7 0.02 4.3E-07 50.1 5.3 101 147-256 52-158 (199)
324 KOG2187|consensus 95.7 0.022 4.9E-07 55.7 6.1 113 136-260 371-493 (534)
325 COG2230 Cfa Cyclopropane fatty 95.7 0.019 4.1E-07 52.6 5.3 45 138-182 62-106 (283)
326 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.035 7.6E-07 52.4 7.0 102 202-311 53-157 (380)
327 TIGR02752 MenG_heptapren 2-hep 95.6 0.026 5.6E-07 50.0 6.1 42 143-184 40-83 (231)
328 COG2226 UbiE Methylase involve 95.6 0.028 6.1E-07 50.4 6.1 52 135-186 38-90 (238)
329 PRK15001 SAM-dependent 23S rib 95.6 0.017 3.8E-07 55.3 5.0 39 148-186 228-267 (378)
330 KOG1562|consensus 95.6 0.036 7.7E-07 50.8 6.6 115 199-313 119-241 (337)
331 PRK04266 fibrillarin; Provisio 95.6 0.018 4E-07 51.3 4.8 41 143-183 67-108 (226)
332 KOG2793|consensus 95.5 0.059 1.3E-06 48.5 7.8 102 202-306 87-197 (248)
333 cd00315 Cyt_C5_DNA_methylase C 95.5 0.033 7.2E-07 51.1 6.4 70 204-280 2-74 (275)
334 PF13489 Methyltransf_23: Meth 95.5 0.03 6.5E-07 46.1 5.6 36 146-182 20-55 (161)
335 KOG2920|consensus 95.5 0.011 2.5E-07 53.7 3.2 59 122-180 87-148 (282)
336 PRK11207 tellurite resistance 95.5 0.023 5E-07 49.4 5.0 39 146-185 28-66 (197)
337 PRK13944 protein-L-isoaspartat 95.4 0.038 8.2E-07 48.4 6.1 45 140-184 64-110 (205)
338 PRK04148 hypothetical protein; 95.4 0.14 3E-06 41.8 8.8 95 139-248 7-103 (134)
339 TIGR00438 rrmJ cell division p 95.4 0.038 8.1E-07 47.5 5.9 39 144-182 28-68 (188)
340 TIGR03587 Pse_Me-ase pseudamin 95.3 0.032 7E-07 48.9 5.5 41 146-186 41-82 (204)
341 TIGR00080 pimt protein-L-isoas 95.3 0.039 8.5E-07 48.5 5.9 43 142-184 71-115 (215)
342 PRK07580 Mg-protoporphyrin IX 95.3 0.05 1.1E-06 48.0 6.5 40 146-186 61-100 (230)
343 PRK13942 protein-L-isoaspartat 95.2 0.042 9E-07 48.4 5.9 46 138-183 66-113 (212)
344 PRK01683 trans-aconitate 2-met 95.2 0.041 8.8E-07 49.7 6.0 43 142-184 25-68 (258)
345 PLN02233 ubiquinone biosynthes 95.2 0.051 1.1E-06 49.5 6.5 43 144-186 69-113 (261)
346 PRK06202 hypothetical protein; 95.2 0.045 9.8E-07 48.7 6.1 38 147-184 59-101 (232)
347 PF03848 TehB: Tellurite resis 95.2 0.028 6.1E-07 48.8 4.5 41 144-185 26-66 (192)
348 PF05185 PRMT5: PRMT5 arginine 95.1 0.036 7.8E-07 54.4 5.6 65 122-186 152-229 (448)
349 PRK11188 rrmJ 23S rRNA methylt 95.1 0.031 6.7E-07 49.2 4.6 36 146-181 49-86 (209)
350 PRK11524 putative methyltransf 95.1 0.023 5.1E-07 52.3 4.0 58 251-308 8-80 (284)
351 PRK14103 trans-aconitate 2-met 95.1 0.04 8.7E-07 49.8 5.3 41 144-184 25-66 (255)
352 PF07021 MetW: Methionine bios 95.0 0.03 6.6E-07 48.3 4.0 37 146-182 11-47 (193)
353 COG4123 Predicted O-methyltran 95.0 0.031 6.8E-07 50.3 4.2 51 131-183 29-80 (248)
354 PRK11705 cyclopropane fatty ac 94.9 0.047 1E-06 52.6 5.5 45 140-184 159-203 (383)
355 PRK12335 tellurite resistance 94.8 0.036 7.8E-07 51.1 4.5 38 147-185 119-156 (287)
356 PRK13168 rumA 23S rRNA m(5)U19 94.8 0.06 1.3E-06 52.9 6.2 42 144-186 293-334 (443)
357 PRK08317 hypothetical protein; 94.8 0.063 1.4E-06 47.2 5.8 46 138-183 9-56 (241)
358 TIGR00755 ksgA dimethyladenosi 94.8 0.067 1.5E-06 48.4 6.0 44 140-184 21-64 (253)
359 COG2890 HemK Methylase of poly 94.7 0.03 6.6E-07 51.5 3.7 40 151-190 113-153 (280)
360 PLN02244 tocopherol O-methyltr 94.7 0.068 1.5E-06 50.6 6.1 39 147-185 117-155 (340)
361 PF02353 CMAS: Mycolic acid cy 94.7 0.062 1.4E-06 49.3 5.6 43 139-181 53-95 (273)
362 PTZ00098 phosphoethanolamine N 94.7 0.056 1.2E-06 49.2 5.3 43 141-183 45-87 (263)
363 PRK00121 trmB tRNA (guanine-N( 94.7 0.039 8.6E-07 48.1 4.1 39 148-186 40-79 (202)
364 PRK05785 hypothetical protein; 94.7 0.041 9E-07 48.9 4.3 39 148-186 51-89 (226)
365 PRK13699 putative methylase; P 94.6 0.036 7.7E-07 49.5 3.8 54 253-306 3-70 (227)
366 TIGR00027 mthyl_TIGR00027 meth 94.5 0.45 9.8E-06 43.3 10.8 124 186-311 67-200 (260)
367 PRK03522 rumB 23S rRNA methylu 94.5 0.067 1.5E-06 50.0 5.5 39 147-186 172-210 (315)
368 PRK11036 putative S-adenosyl-L 94.4 0.11 2.3E-06 47.0 6.4 38 147-185 43-80 (255)
369 PRK10258 biotin biosynthesis p 94.3 0.099 2.1E-06 47.0 6.1 37 147-184 41-77 (251)
370 PF01209 Ubie_methyltran: ubiE 94.3 0.042 9.2E-07 49.2 3.6 43 144-186 43-87 (233)
371 PRK09880 L-idonate 5-dehydroge 94.3 0.17 3.8E-06 47.5 7.9 97 198-307 166-265 (343)
372 PF08241 Methyltransf_11: Meth 94.3 0.058 1.3E-06 39.9 3.8 30 153-182 1-30 (95)
373 PRK05134 bifunctional 3-demeth 94.3 0.12 2.6E-06 45.8 6.4 40 143-183 43-82 (233)
374 TIGR01177 conserved hypothetic 94.2 0.075 1.6E-06 50.0 5.3 47 139-186 173-219 (329)
375 PTZ00338 dimethyladenosine tra 94.2 0.085 1.8E-06 48.9 5.5 46 139-185 27-72 (294)
376 COG2813 RsmC 16S RNA G1207 met 94.1 0.07 1.5E-06 49.2 4.6 48 139-186 149-197 (300)
377 PRK00312 pcm protein-L-isoaspa 94.1 0.12 2.5E-06 45.3 5.9 40 142-182 72-111 (212)
378 COG1064 AdhP Zn-dependent alco 94.1 0.16 3.5E-06 47.8 7.0 94 197-308 162-259 (339)
379 COG2518 Pcm Protein-L-isoaspar 94.1 0.099 2.1E-06 45.8 5.2 40 142-182 66-105 (209)
380 PLN02585 magnesium protoporphy 94.1 0.07 1.5E-06 50.0 4.6 39 147-186 143-181 (315)
381 TIGR03704 PrmC_rel_meth putati 94.0 0.093 2E-06 47.5 5.2 39 148-186 86-125 (251)
382 TIGR02085 meth_trns_rumB 23S r 94.0 0.09 2E-06 50.5 5.4 39 147-186 232-270 (374)
383 PRK09328 N5-glutamine S-adenos 94.0 0.088 1.9E-06 47.8 5.1 52 134-185 94-146 (275)
384 COG1568 Predicted methyltransf 94.0 0.2 4.4E-06 45.6 7.0 105 198-309 149-261 (354)
385 PRK15451 tRNA cmo(5)U34 methyl 93.9 0.071 1.5E-06 48.0 4.2 41 146-186 54-97 (247)
386 COG2519 GCD14 tRNA(1-methylade 93.9 0.65 1.4E-05 41.9 10.2 55 138-192 84-142 (256)
387 PRK14966 unknown domain/N5-glu 93.9 0.079 1.7E-06 51.4 4.7 54 131-186 236-290 (423)
388 COG4301 Uncharacterized conser 93.9 0.85 1.8E-05 41.0 10.7 109 196-307 73-192 (321)
389 PRK15128 23S rRNA m(5)C1962 me 93.9 0.079 1.7E-06 51.3 4.7 39 147-185 219-257 (396)
390 PRK09489 rsmC 16S ribosomal RN 93.9 0.09 1.9E-06 49.9 5.0 39 148-186 196-235 (342)
391 KOG1501|consensus 93.8 0.052 1.1E-06 52.3 3.2 48 134-181 50-99 (636)
392 PRK00216 ubiE ubiquinone/menaq 93.7 0.14 3E-06 45.2 5.6 38 145-182 48-87 (239)
393 PRK14968 putative methyltransf 93.6 0.1 2.2E-06 44.3 4.5 37 147-184 22-58 (188)
394 PF01135 PCMT: Protein-L-isoas 93.6 0.14 3E-06 45.1 5.3 48 135-182 59-108 (209)
395 PTZ00146 fibrillarin; Provisio 93.6 0.1 2.2E-06 48.2 4.5 38 143-180 127-166 (293)
396 COG1189 Predicted rRNA methyla 93.5 0.16 3.5E-06 45.2 5.6 44 138-181 69-112 (245)
397 PRK11524 putative methyltransf 93.5 0.2 4.4E-06 46.1 6.5 57 187-245 195-252 (284)
398 PRK06922 hypothetical protein; 93.5 0.14 3E-06 52.3 5.7 42 145-186 415-457 (677)
399 TIGR03533 L3_gln_methyl protei 93.4 0.087 1.9E-06 48.6 4.0 39 148-186 121-160 (284)
400 PHA03411 putative methyltransf 93.4 0.31 6.6E-06 44.7 7.4 37 148-184 64-101 (279)
401 KOG2904|consensus 93.4 0.18 4E-06 45.9 5.8 45 142-186 142-187 (328)
402 PHA03412 putative methyltransf 93.4 0.057 1.2E-06 48.3 2.6 39 148-186 49-91 (241)
403 TIGR02081 metW methionine bios 93.4 0.11 2.4E-06 44.8 4.4 35 148-182 13-47 (194)
404 TIGR00740 methyltransferase, p 93.4 0.11 2.4E-06 46.4 4.5 38 147-184 52-92 (239)
405 COG4076 Predicted RNA methylas 93.3 0.065 1.4E-06 46.0 2.7 59 121-184 9-67 (252)
406 PHA01634 hypothetical protein 93.3 0.24 5.1E-06 40.0 5.6 77 146-234 26-102 (156)
407 TIGR01934 MenG_MenH_UbiE ubiqu 93.3 0.24 5.3E-06 43.1 6.5 37 146-182 37-75 (223)
408 PF05711 TylF: Macrocin-O-meth 93.2 0.47 1E-05 42.9 8.1 120 187-311 60-215 (248)
409 COG0030 KsgA Dimethyladenosine 93.2 0.17 3.7E-06 45.9 5.3 45 137-182 19-63 (259)
410 TIGR00536 hemK_fam HemK family 93.2 0.15 3.2E-06 47.0 5.0 37 150-186 116-153 (284)
411 PF01555 N6_N4_Mtase: DNA meth 93.1 0.21 4.5E-06 43.5 5.8 52 187-240 178-230 (231)
412 PRK13943 protein-L-isoaspartat 93.1 0.22 4.7E-06 46.9 6.0 43 142-184 74-118 (322)
413 PRK11873 arsM arsenite S-adeno 93.1 0.11 2.4E-06 47.2 4.1 42 145-186 74-117 (272)
414 PF10354 DUF2431: Domain of un 93.0 0.43 9.4E-06 40.4 7.3 104 208-311 3-128 (166)
415 PRK13699 putative methylase; P 93.0 0.28 6.1E-06 43.7 6.5 58 187-246 150-208 (227)
416 PF13679 Methyltransf_32: Meth 93.0 0.46 9.9E-06 38.9 7.3 43 144-186 21-68 (141)
417 PF08242 Methyltransf_12: Meth 92.9 0.071 1.5E-06 40.4 2.1 32 153-184 1-33 (99)
418 TIGR00091 tRNA (guanine-N(7)-) 92.8 0.13 2.9E-06 44.4 4.0 37 148-184 16-53 (194)
419 PLN02672 methionine S-methyltr 92.7 0.12 2.6E-06 55.8 4.1 41 146-186 116-157 (1082)
420 PF13649 Methyltransf_25: Meth 92.6 0.14 3.1E-06 39.0 3.5 34 152-185 1-38 (101)
421 PF03602 Cons_hypoth95: Conser 92.4 0.16 3.5E-06 43.7 4.0 36 147-182 41-76 (183)
422 TIGR00479 rumA 23S rRNA (uraci 92.4 0.23 5E-06 48.5 5.6 41 145-186 289-329 (431)
423 TIGR03534 RF_mod_PrmC protein- 92.3 0.15 3.2E-06 45.5 3.8 39 148-186 87-126 (251)
424 PF00145 DNA_methylase: C-5 cy 92.3 0.17 3.8E-06 46.8 4.4 69 204-280 2-73 (335)
425 cd08283 FDH_like_1 Glutathione 92.2 0.68 1.5E-05 44.3 8.4 105 196-307 179-305 (386)
426 KOG0024|consensus 92.1 0.28 6.1E-06 45.7 5.2 96 198-307 166-272 (354)
427 PF08123 DOT1: Histone methyla 92.0 0.35 7.6E-06 42.4 5.7 45 142-186 36-81 (205)
428 PRK11805 N5-glutamine S-adenos 92.0 0.15 3.3E-06 47.6 3.5 37 150-186 135-172 (307)
429 smart00138 MeTrc Methyltransfe 92.0 0.33 7.2E-06 44.3 5.7 40 147-186 98-147 (264)
430 PRK11727 23S rRNA mA1618 methy 91.9 0.19 4.1E-06 47.2 4.1 39 148-186 114-153 (321)
431 TIGR02072 BioC biotin biosynth 91.8 0.22 4.8E-06 43.7 4.2 36 147-182 33-69 (240)
432 COG1063 Tdh Threonine dehydrog 91.6 0.31 6.6E-06 46.3 5.2 94 200-306 167-267 (350)
433 KOG2651|consensus 91.6 0.47 1E-05 45.1 6.2 55 187-241 139-194 (476)
434 cd02440 AdoMet_MTases S-adenos 91.6 0.21 4.5E-06 36.7 3.3 33 151-183 1-33 (107)
435 COG4627 Uncharacterized protei 91.6 0.054 1.2E-06 45.1 0.1 50 262-312 41-90 (185)
436 smart00828 PKS_MT Methyltransf 91.5 0.26 5.6E-06 43.3 4.3 33 150-182 1-34 (224)
437 TIGR03840 TMPT_Se_Te thiopurin 91.4 0.16 3.6E-06 44.7 3.0 39 147-186 33-71 (213)
438 COG2265 TrmA SAM-dependent met 91.4 2.5 5.5E-05 41.4 11.4 94 140-234 285-398 (432)
439 PF01170 UPF0020: Putative RNA 91.4 0.24 5.1E-06 42.4 3.8 50 137-186 17-76 (179)
440 PRK04457 spermidine synthase; 91.2 0.86 1.9E-05 41.5 7.5 38 148-185 66-104 (262)
441 PLN02490 MPBQ/MSBQ methyltrans 91.2 0.41 8.8E-06 45.3 5.5 37 147-183 112-149 (340)
442 TIGR01444 fkbM_fam methyltrans 91.1 0.23 5.1E-06 40.2 3.4 35 151-185 1-36 (143)
443 PF00398 RrnaAD: Ribosomal RNA 91.0 0.38 8.3E-06 43.7 5.0 42 139-181 21-62 (262)
444 PF08704 GCD14: tRNA methyltra 90.9 0.41 8.9E-06 43.3 5.0 48 139-186 31-80 (247)
445 PRK13255 thiopurine S-methyltr 90.9 0.21 4.5E-06 44.2 3.1 39 147-186 36-74 (218)
446 PRK10901 16S rRNA methyltransf 90.9 0.36 7.8E-06 47.1 5.0 42 145-186 241-283 (427)
447 TIGR03438 probable methyltrans 90.8 0.57 1.2E-05 43.5 6.1 36 148-183 63-100 (301)
448 COG4106 Tam Trans-aconitate me 90.7 0.28 6.1E-06 43.2 3.6 55 131-186 14-69 (257)
449 TIGR00675 dcm DNA-methyltransf 90.7 0.4 8.7E-06 44.9 5.0 69 205-279 1-70 (315)
450 PF02475 Met_10: Met-10+ like- 90.5 0.4 8.8E-06 41.9 4.5 37 146-182 99-136 (200)
451 PRK11088 rrmA 23S rRNA methylt 90.4 0.35 7.5E-06 44.2 4.2 39 148-186 85-127 (272)
452 TIGR02716 C20_methyl_CrtF C-20 90.3 0.56 1.2E-05 43.5 5.6 41 139-179 140-181 (306)
453 PF02636 Methyltransf_28: Puta 90.3 0.95 2.1E-05 40.8 6.9 72 202-278 19-105 (252)
454 COG0742 N6-adenine-specific me 90.3 0.74 1.6E-05 39.7 5.8 40 146-185 41-80 (187)
455 COG2933 Predicted SAM-dependen 90.1 0.67 1.5E-05 42.0 5.5 72 198-277 208-279 (358)
456 PRK01747 mnmC bifunctional tRN 89.9 0.77 1.7E-05 47.4 6.7 103 203-305 59-203 (662)
457 KOG1271|consensus 89.9 0.47 1E-05 40.8 4.2 36 151-186 70-106 (227)
458 PF03269 DUF268: Caenorhabditi 89.8 0.55 1.2E-05 39.4 4.5 98 202-308 2-111 (177)
459 KOG2078|consensus 89.8 0.39 8.4E-06 46.3 4.0 88 171-261 219-310 (495)
460 PRK11760 putative 23S rRNA C24 89.7 0.48 1E-05 44.7 4.5 36 145-181 208-243 (357)
461 PRK14121 tRNA (guanine-N(7)-)- 89.6 0.42 9.1E-06 46.0 4.1 38 148-185 122-160 (390)
462 PRK14902 16S rRNA methyltransf 89.4 0.59 1.3E-05 45.9 5.2 42 144-185 246-289 (444)
463 PRK10458 DNA cytosine methylas 89.2 1.8 3.9E-05 42.8 8.4 75 202-279 88-180 (467)
464 PF10237 N6-adenineMlase: Prob 89.2 2.7 5.8E-05 35.5 8.3 98 201-311 25-126 (162)
465 COG1565 Uncharacterized conser 89.0 0.92 2E-05 43.0 5.8 71 174-246 49-132 (370)
466 TIGR02143 trmA_only tRNA (urac 88.8 0.55 1.2E-05 44.7 4.3 36 150-186 199-234 (353)
467 COG0116 Predicted N6-adenine-s 88.7 0.71 1.5E-05 44.1 5.0 38 134-171 177-214 (381)
468 PRK09424 pntA NAD(P) transhydr 88.7 2.1 4.5E-05 42.9 8.4 101 199-308 162-285 (509)
469 KOG3924|consensus 88.7 1.6 3.6E-05 41.7 7.3 114 188-305 179-305 (419)
470 KOG2915|consensus 88.6 2 4.3E-05 39.2 7.4 48 139-186 96-145 (314)
471 PRK00811 spermidine synthase; 88.6 0.53 1.1E-05 43.4 4.0 39 148-186 76-115 (283)
472 KOG2912|consensus 88.6 1.4 3E-05 41.1 6.5 75 205-279 106-189 (419)
473 KOG1541|consensus 88.5 0.49 1.1E-05 41.9 3.4 38 148-186 50-87 (270)
474 PF04072 LCM: Leucine carboxyl 88.5 1.7 3.7E-05 37.1 6.8 109 185-294 61-182 (183)
475 PRK11677 hypothetical protein; 88.4 1.2 2.6E-05 36.2 5.4 55 41-96 5-59 (134)
476 COG0686 Ald Alanine dehydrogen 88.2 1.2 2.5E-05 41.6 5.8 108 203-318 169-289 (371)
477 TIGR00563 rsmB ribosomal RNA s 88.1 0.82 1.8E-05 44.7 5.2 42 145-186 235-277 (426)
478 TIGR00446 nop2p NOL1/NOP2/sun 88.0 0.72 1.6E-05 42.0 4.4 41 145-185 68-110 (264)
479 PLN02781 Probable caffeoyl-CoA 87.9 0.52 1.1E-05 42.2 3.4 39 145-183 65-105 (234)
480 TIGR00417 speE spermidine synt 87.7 2.5 5.5E-05 38.5 7.8 37 148-184 72-109 (270)
481 PRK05031 tRNA (uracil-5-)-meth 87.7 0.67 1.5E-05 44.3 4.2 36 150-186 208-243 (362)
482 cd08281 liver_ADH_like1 Zinc-d 87.5 1.8 4E-05 41.0 7.1 96 195-306 185-288 (371)
483 cd08254 hydroxyacyl_CoA_DH 6-h 87.5 3.1 6.6E-05 38.4 8.5 93 197-306 161-261 (338)
484 cd08230 glucose_DH Glucose deh 87.4 2.3 4.9E-05 40.1 7.6 93 199-306 170-267 (355)
485 TIGR03451 mycoS_dep_FDH mycoth 87.4 2.4 5.3E-05 39.9 7.8 94 197-306 172-274 (358)
486 KOG0821|consensus 87.2 1.1 2.3E-05 39.7 4.7 73 188-262 37-110 (326)
487 cd08232 idonate-5-DH L-idonate 87.2 2.4 5.3E-05 39.3 7.6 90 201-306 165-260 (339)
488 KOG0820|consensus 87.0 1.2 2.7E-05 40.6 5.2 50 134-184 44-93 (315)
489 COG0270 Dcm Site-specific DNA 86.9 1.4 3.1E-05 41.4 5.9 74 203-281 4-80 (328)
490 PRK14904 16S rRNA methyltransf 86.9 0.97 2.1E-05 44.4 4.9 43 144-186 246-290 (445)
491 cd05188 MDR Medium chain reduc 86.8 1.4 3E-05 39.0 5.5 92 199-306 132-230 (271)
492 PRK04338 N(2),N(2)-dimethylgua 86.3 0.95 2.1E-05 43.6 4.4 38 149-186 58-96 (382)
493 PRK08324 short chain dehydroge 86.3 28 0.00062 36.1 15.6 73 200-276 420-506 (681)
494 PF05206 TRM13: Methyltransfer 86.2 6.5 0.00014 35.8 9.5 65 199-263 16-86 (259)
495 KOG2920|consensus 85.8 0.6 1.3E-05 42.7 2.5 109 200-311 115-237 (282)
496 PRK00050 16S rRNA m(4)C1402 me 85.8 1.3 2.8E-05 41.2 4.8 42 145-186 16-59 (296)
497 PRK14903 16S rRNA methyltransf 85.4 1.2 2.6E-05 43.6 4.7 42 145-186 234-277 (431)
498 PRK14901 16S rRNA methyltransf 85.2 1.4 3E-05 43.2 5.0 43 144-186 248-292 (434)
499 COG4976 Predicted methyltransf 84.9 0.9 2E-05 40.5 3.1 39 144-183 121-159 (287)
500 cd08237 ribitol-5-phosphate_DH 84.8 3.9 8.5E-05 38.3 7.8 90 199-306 161-254 (341)
No 1
>KOG1499|consensus
Probab=99.97 E-value=3e-31 Score=242.61 Aligned_cols=159 Identities=53% Similarity=0.878 Sum_probs=151.2
Q ss_pred CCcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 107 RRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 107 ~~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
...+++||.+|.++++|+.|++|.+|+.+|+.++..|..+|.+
T Consensus 19 ~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~d------------------------------------- 61 (346)
T KOG1499|consen 19 MTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKD------------------------------------- 61 (346)
T ss_pred cchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCC-------------------------------------
Confidence 3478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV 266 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~ 266 (319)
+.|||+|||||.++++++++|+.+|+|+|.|.+++.|.+.+..|++.+.++++++.++++.+|.
T Consensus 62 ----------------K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~ 125 (346)
T KOG1499|consen 62 ----------------KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPV 125 (346)
T ss_pred ----------------CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCc
Confidence 6788888888888888889889999999999988999999999999989999999999999998
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA 318 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~ 318 (319)
+++|+|+|+||+|++.+++++..+|.+..++|+|||.++|+.++++++|+++
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d 177 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIED 177 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccC
Confidence 9999999999999999999999999999999999999999999999999875
No 2
>KOG1500|consensus
Probab=99.93 E-value=1.8e-25 Score=201.80 Aligned_cols=157 Identities=45% Similarity=0.676 Sum_probs=146.2
Q ss_pred CcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHH
Q psy8709 108 RHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTE 187 (319)
Q Consensus 108 ~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~ 187 (319)
...++||+.|++....+.|+.|.+|+..|.+++..|-..|.+
T Consensus 137 sSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~-------------------------------------- 178 (517)
T KOG1500|consen 137 SSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQD-------------------------------------- 178 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCC--------------------------------------
Confidence 457899999999999999999999999999999999998888
Q ss_pred HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE 267 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~ 267 (319)
+.|||+|||+|+++++++++|+++|++++.|.|.+.|++.++.|.+.++|+++.|.++++.+| +
T Consensus 179 ---------------kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-E 242 (517)
T KOG1500|consen 179 ---------------KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-E 242 (517)
T ss_pred ---------------cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-h
Confidence 677777888888888888888899999999999999999999999999999999999999999 8
Q ss_pred ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeeccccC
Q psy8709 268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE 319 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~e 319 (319)
+.|+||+++|++.+..+.+++..+.+. ++|||.|.++|+...++++|+++|
T Consensus 243 k~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDE 293 (517)
T ss_pred hccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchH
Confidence 999999999999999999999998877 999999999999999999999876
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.4e-18 Score=154.51 Aligned_cols=117 Identities=21% Similarity=0.329 Sum_probs=103.3
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~ 264 (319)
..|++.+...+...+|.+|||+|||||.++..+++. |.++|+|+|+|+ |++.+++++...+... ++|+.+|++++|+
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf 115 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence 567777777777778999999999999999999994 677999999999 9999999999888754 9999999999999
Q ss_pred CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
++++||+|.+...++.+ .+++++|++++|+|||||++++-
T Consensus 116 ~D~sFD~vt~~fglrnv---~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 116 PDNSFDAVTISFGLRNV---TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CCCccCEEEeeehhhcC---CCHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999976655444 78999999999999999988743
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=4.2e-18 Score=134.53 Aligned_cols=108 Identities=26% Similarity=0.295 Sum_probs=91.3
Q ss_pred CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cccccCCCceeEEEecc-
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDVELPVESVDIIISEW- 276 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~~~~~~~fD~Iis~~- 276 (319)
|+.+|||+|||+|.++..+++ .+..+|+|+|+|+ +++.+++++...+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 468999999999999999999 3566999999999 9999999997778889999999999 333333 6799999988
Q ss_pred chhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..+++...+....+++.+.+.|+|||+++++.|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 445444446788999999999999999999875
No 5
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.74 E-value=1.7e-17 Score=160.99 Aligned_cols=116 Identities=43% Similarity=0.662 Sum_probs=95.1
Q ss_pred CCcceeeccCCCchHHHHHHHcC-----CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAG-----AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS 274 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g-----~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis 274 (319)
++..|||+|||+|.++.++++++ ..+|++||.++ +....++.++.+++.++|+++++|++++..| +++|+|||
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 34789999999999998888865 57999999999 6655666778899989999999999999988 69999999
Q ss_pred ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709 275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA 318 (319)
Q Consensus 275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~ 318 (319)
+++|.+..+| ...+.|..+.|+|||||+++|+..+.|++|+++
T Consensus 265 ElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss 307 (448)
T PF05185_consen 265 ELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISS 307 (448)
T ss_dssp ---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-
T ss_pred eccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeC
Confidence 9999887665 556789999999999999999999999999975
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=9.5e-18 Score=149.97 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=83.8
Q ss_pred HHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~ 264 (319)
.|++.+.+.....++.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|++++...+. .+++++++|++++++
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhcC
Confidence 34445555566777889999999999999999885 3 46999999999 99999999998887 499999999999999
Q ss_pred CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
++++||+|++....+.+ .++...+++++|+|||||++++
T Consensus 113 ~d~sfD~v~~~fglrn~---~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNF---PDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp -TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhh---CCHHHHHHHHHHHcCCCeEEEE
Confidence 99999999987655544 5678899999999999999884
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=1.5e-16 Score=121.10 Aligned_cols=94 Identities=24% Similarity=0.369 Sum_probs=80.9
Q ss_pred eeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhcch
Q psy8709 206 IDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFE 284 (319)
Q Consensus 206 LDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~ 284 (319)
||+|||+|..+..+++.+..+|+++|+++ +++.++++.... ++.+..+|+.++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 79999999999999999666999999999 999988877553 4569999999999999999999998888776
Q ss_pred hhHHHHHHHHhcccCCCcEEEe
Q psy8709 285 TMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 285 ~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7889999999999999999985
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=4.2e-16 Score=147.16 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHHHHHHhccccc-----CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709 187 ESYKSAILNNKSL-----FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE 260 (319)
Q Consensus 187 ~~~~~~i~~~l~~-----~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~ 260 (319)
..+.+.++..+.. .++.+|||+|||+|.++..+++....+|+|+|+|+ +++.++++.+..+..++++++.+|+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 4455556655554 56789999999999999999986345999999999 99999999998888788999999999
Q ss_pred ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
++++++++||+|++....+++ .+...+++++.++|||||.+++...
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHM---PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cCCCCCCCccEEEECCchhcc---CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 988888999999997766555 5677899999999999999998653
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=5.9e-16 Score=140.93 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=95.7
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHH--hcCCCCcEEEEEcCccccc
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIR--KNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~--~~g~~~~i~~i~~d~~~~~ 263 (319)
+.+.+...+...++.+|||+|||+|.++..+++. + ..+|+|+|+|+ |++.|+++.. ..+...+++++++|+++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3444445556667889999999999999988874 3 35999999999 9999987653 2223358999999999999
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+++++||+|+++...+++ .++..+++++.|+|||||.+++...+
T Consensus 141 ~~~~sfD~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CCCCCEeEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 988899999987776655 56789999999999999999876543
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.67 E-value=1.8e-16 Score=139.11 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=96.1
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
.++.+|||+|||.|.++..+|+.|+ +|+|+|+++ +++.|+.....+++ ++.+....++++....++||+|+|.-+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 5678999999999999999999985 999999999 99999999999887 5788888888887666899999997765
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC 314 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~ 314 (319)
.++ +++..+++.+.+++||||.+++++.+..+.
T Consensus 135 EHv---~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 135 EHV---PDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred Hcc---CCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 544 778889999999999999999999876543
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=5.8e-16 Score=129.45 Aligned_cols=105 Identities=30% Similarity=0.388 Sum_probs=91.2
Q ss_pred CCcceeeccCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQ-A-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~-~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~ 275 (319)
++.+|||+|||+|.++..+++ . +..+++|+|+|+ +++.|+++++..++. +++++++|+.+++ ++ ++||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 457999999999999999994 3 456999999999 999999999999985 9999999999976 55 799999998
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.+.+++ .+...+++++.++|++||.+++....
T Consensus 81 ~~l~~~---~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF---PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT---SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc---cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 877655 66778999999999999999987665
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=7.9e-16 Score=134.41 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=92.1
Q ss_pred hcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEE
Q psy8709 194 LNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDII 272 (319)
Q Consensus 194 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~I 272 (319)
+..+...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++....++ .++++...|+.+.+++ ++||+|
T Consensus 23 ~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I 99 (197)
T PRK11207 23 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFI 99 (197)
T ss_pred HHhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEE
Confidence 3334455668999999999999999999876 999999999 99999999888887 5689999999887665 679999
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+++.++|++ .......+++++.++|+|||++++
T Consensus 100 ~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 100 LSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EEecchhhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999887765 345788999999999999999543
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=142.45 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=102.3
Q ss_pred CceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709 171 AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD 249 (319)
Q Consensus 171 a~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~ 249 (319)
...+.++.++. .++.....+.+...+...++++|||+|||+|.++..++..|...|+|+|+|+ ++..++...+..+..
T Consensus 93 ~~~~~~~~~~~-ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~ 171 (322)
T PRK15068 93 PFSLFGIHIDT-EWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND 171 (322)
T ss_pred CccccCeeecc-eehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC
Confidence 34444444443 3444444556666776667899999999999999999998877899999999 887655443333333
Q ss_pred CcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 250 ~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.++.++.++++++++ .++||+|+|..+.|+. .++..+++++++.|+|||.+++++
T Consensus 172 ~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~---~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 172 QRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHR---RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCeEEEeCCHHHCCC-cCCcCEEEECChhhcc---CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 589999999999887 5889999997776654 567889999999999999999875
No 14
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1.8e-15 Score=137.10 Aligned_cols=123 Identities=24% Similarity=0.222 Sum_probs=108.8
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~ 264 (319)
.....+.+...+.+.+|++|||||||.|.+++.+++.-..+|+|+++|+ +.+.+++.++..|+..+++++..|..++.
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 3566788889999999999999999999999999997445999999999 99999999999999889999999998865
Q ss_pred CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
++||.|+|-.++.++.. +..+.+++.++++|+|||.++..+.+..
T Consensus 136 --e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 136 --EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred --cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 44999999999888755 5689999999999999999997776543
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.64 E-value=2.2e-15 Score=134.39 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=99.5
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
..+.+.++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.+++++...++ ++++++.+|+.+.+
T Consensus 31 ~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence 445566777777788899999999999999999874 345999999999 99999999887777 68999999999888
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
++.++||+|++....+++ ++...+++++.++|+|||++++..
T Consensus 110 ~~~~~fD~V~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCCCCccEEEEecccccC---CCHHHHHHHHHHHcCcCeEEEEEE
Confidence 777899999987665544 566789999999999999998644
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.64 E-value=1.5e-15 Score=141.07 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=103.4
Q ss_pred CceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709 171 AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD 249 (319)
Q Consensus 171 a~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~ 249 (319)
...+.++.+ +..++.+.....++..+...++++|||+|||+|.++..++..|...|+|+|+|+ |+..+....+..+..
T Consensus 92 ~~~l~~~~~-~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~ 170 (314)
T TIGR00452 92 PFELSGIKI-DSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND 170 (314)
T ss_pred CcccccccC-CHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC
Confidence 334444444 345556666677777777788899999999999999999888877899999999 887654333222223
Q ss_pred CcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 250 ~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.++.+..+++++++.. .+||+|+|..+.++. .++..+|+++++.|+|||.|++++.
T Consensus 171 ~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 171 KRAILEPLGIEQLHEL-YAFDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCeEEEECCHHHCCCC-CCcCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 5788999999888754 589999998877665 5667899999999999999998754
No 17
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.64 E-value=1.6e-15 Score=138.54 Aligned_cols=123 Identities=25% Similarity=0.279 Sum_probs=98.7
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
...+..+.+.+.+.+.+|.+|||||||.|.++..+++. |+ +|+|+.+|+ ..+.+++.++..|+.+++++...|..++
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 34677888999999999999999999999999999997 65 999999999 9999999999999999999999999876
Q ss_pred ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
+ .+||.|+|-.++.++. ....+.+++.+.++|||||.++++..+..
T Consensus 125 ~---~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 125 P---GKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp -----S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred C---CCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 5 3899999988876654 36789999999999999999998766543
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.63 E-value=1.2e-15 Score=142.26 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=92.8
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
.++.+|||||||+|.++..+++.|. +|+|+|+++ +++.|+++....+...+++++++++++++++.++||+|++..+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4567999999999999999998765 999999999 99999988766655568999999999887777899999987776
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+++ .+...+++++.++|||||.+++++.+.
T Consensus 209 eHv---~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 EHV---ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred Hhc---CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 665 567889999999999999999887543
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=2.1e-15 Score=131.53 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=89.6
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD 270 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD 270 (319)
.+...+...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++...+++ ++.+...|+...+++ ++||
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD 96 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALN-EDYD 96 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhcccc-CCCC
Confidence 333444455568999999999999999999875 999999999 99999998888776 377888888765554 6899
Q ss_pred EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+|+++.+++++. ......+++++.++|+|||++++
T Consensus 97 ~I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 97 FIFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 999988877653 35678999999999999998553
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=2e-15 Score=136.93 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=94.2
Q ss_pred HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCcee
Q psy8709 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVD 270 (319)
Q Consensus 193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD 270 (319)
+++.+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++++...++.++++++++|+.++. .+.++||
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCC
Confidence 344443 3457999999999999999999865 999999999 99999999998888788999999998764 4557999
Q ss_pred EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+|++..+.+++ .++..++.++.++|||||++++...
T Consensus 115 ~V~~~~vl~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 115 LILFHAVLEWV---ADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEEehhHHHhh---CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 99998887766 4567899999999999999986543
No 21
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.60 E-value=3.3e-15 Score=135.57 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=112.4
Q ss_pred HhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709 167 AQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK 245 (319)
Q Consensus 167 a~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~ 245 (319)
.+.|+-.++++.+|. .|+++...+.+...+....|++|||||||+|+.+..++..|++.|+|+|.+. ...+.....+-
T Consensus 82 WRKGPf~l~gi~IDt-EWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~ 160 (315)
T PF08003_consen 82 WRKGPFSLFGIHIDT-EWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF 160 (315)
T ss_pred cccCCcccCCEeecc-cccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH
Confidence 466788899999985 7888888888999988889999999999999999999999999999999999 55443322222
Q ss_pred cCCCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 246 NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 246 ~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
.|....+.++...+++++. .+.||+|+|-+++||. .++-..|.+++..|+|||.+++++..+
T Consensus 161 lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 161 LGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHR---RSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred hCCCccEEEcCcchhhccc-cCCcCEEEEeeehhcc---CCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 3333345555567777776 5899999998887775 667788999999999999999877653
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.60 E-value=1.5e-14 Score=115.71 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=95.0
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV- 262 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~- 262 (319)
...+...+...+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++..+. .+++++.+|+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEAL 82 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccC
Confidence 4556666777777777789999999999999999985 457999999999 99999999988877 4789999987653
Q ss_pred ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+...++||.|++.... .....+++.+.+.|+|||.++++..|
T Consensus 83 ~~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~~ 124 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSG------GLLQEILEAIWRRLRPGGRIVLNAIT 124 (124)
T ss_pred hhhcCCCCEEEECCcc------hhHHHHHHHHHHHcCCCCEEEEEecC
Confidence 2223689999986532 33468999999999999999988654
No 23
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.60 E-value=8.8e-15 Score=126.26 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=90.3
Q ss_pred HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI 271 (319)
Q Consensus 193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~ 271 (319)
+++..+..++.++||+|||.|+.+.++++.|. .|+++|.|+ .++.+.+.+...++ .++....|+.+..++ +.||+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcccc-CCcCE
Confidence 33344555678999999999999999999998 999999999 99999998888887 499999999988876 78999
Q ss_pred EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
|++..+++++.. +..+.++..+...++|||++++.+
T Consensus 98 I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999888877654 677999999999999999988743
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.60 E-value=6.7e-15 Score=133.10 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=93.4
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
....+.+++.+...++.+|||+|||+|.++..+++.+ .+|+++|+|+ |++.++++.. ...++.+|+++++++
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC
Confidence 4455556666665566899999999999999988876 4999999999 9988876532 346789999998888
Q ss_pred CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.++||+|+++.+.+|. .++..++.++.++|+|||.+++++..
T Consensus 101 ~~~fD~V~s~~~l~~~---~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 101 TATFDLAWSNLAVQWC---GNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCcEEEEEECchhhhc---CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 7899999999887765 56789999999999999999987543
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.59 E-value=1.1e-14 Score=132.75 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=94.6
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES 268 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~ 268 (319)
...++..+.+.++.+|||+|||+|..+..+++....+|+|+|+|+ +++.++++... .+++.++.+|+.+.+++.++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCC
Confidence 445566677788899999999999999988875344999999999 99999887643 25799999999888888889
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
||+|++....+++ ...+...++++++++|||||.+++...
T Consensus 118 FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 118 FDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred eEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999986554443 224678999999999999999998654
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.58 E-value=1.1e-14 Score=125.83 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=88.0
Q ss_pred CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
++.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.|+++++.+++. +++++++|+.++.. .++||+|+++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 478999999999999998887 4557999999999 999999999999984 59999999988766 579999998653
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
..++.+++.+.++|+|||++++.....
T Consensus 122 ------~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 122 ------ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred ------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 346789999999999999999776553
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=1.4e-14 Score=123.59 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=89.3
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA-KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV 269 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f 269 (319)
.+.+.+...++.+|||+|||+|.++..+++.+.. +|+++|+++ +++.+++++..+++.+ ++++..|..+.. +.++|
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-~~~~f 99 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-PDGKF 99 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-CTTCE
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-cccce
Confidence 3344444446689999999999999999997543 799999999 9999999999999855 999999987643 35899
Q ss_pred eEEEeccchhhhcc--hhhHHHHHHHHhcccCCCcEEEee
Q psy8709 270 DIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 270 D~Iis~~~~~~l~~--~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
|+|+||++.+.-.. ......++..+.++|+|||.+++-
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99999998654321 135788999999999999998653
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.57 E-value=1.9e-14 Score=123.98 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=85.5
Q ss_pred CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM 277 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~ 277 (319)
.++.+|||+|||+|.++..++.. +..+|+|+|.|+ +++.++++++.+++ ++++++++|+.++. ..++||+|+++..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~-~~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ-HEEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc-ccCCccEEEehhh
Confidence 35789999999999999998875 356899999999 99999999988887 57999999998864 3478999998752
Q ss_pred hhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
..+..+++.+.++|+|||.+++.....
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 234567888899999999999775443
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=1.7e-14 Score=130.40 Aligned_cols=106 Identities=17% Similarity=0.267 Sum_probs=90.8
Q ss_pred CCCcceeeccCCCchHHHHHHH---cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQ---AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~---~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
.++.+|||+|||+|.++..+++ .+..+++|+|+|+ |++.|++++...+...+++++.+|+.+++++ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 3557999999999999988876 2456999999999 9999999998888767899999999887654 59999998
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
...+++.. .....+++++++.|||||.+++..
T Consensus 133 ~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 88877653 456889999999999999999875
No 30
>KOG1540|consensus
Probab=99.56 E-value=2.7e-14 Score=125.66 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=98.5
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CC------CEEEEEecHH-HHHHHHHHHHhcCCCCc--EEEEEcC
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GA------AKVFAIEKSD-IAYETIDIIRKNKYDSQ--IEVYHKL 258 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~gvD~s~-~i~~a~~~~~~~g~~~~--i~~i~~d 258 (319)
|.+.....+...++.++||++||||-++..+.+. +. ++|+.+|+++ |+..+.++..+.++... +.++.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 5677778888888999999999999999998884 33 6999999999 99999999888777555 9999999
Q ss_pred ccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 259 ~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
++++++++.+||...+.. .+..-..+++.+++++|+|||||+|.
T Consensus 168 AE~LpFdd~s~D~yTiaf---GIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIAF---GIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred cccCCCCCCcceeEEEec---ceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999999999999543 33444678899999999999999987
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=1.7e-14 Score=130.94 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=88.5
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES 268 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~ 268 (319)
..++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|++ .+++++.+|++++. +.++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~-~~~~ 89 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGDVRDWK-PKPD 89 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcChhhCC-CCCC
Confidence 45566677777899999999999999999886 345999999999 9988864 24788999998764 4579
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
||+|+++.+++|+ .+...+++++.+.|||||.+++..
T Consensus 90 fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 90 TDVVVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ceEEEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEEc
Confidence 9999999988876 456889999999999999999864
No 32
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.56 E-value=2.6e-14 Score=124.74 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=116.0
Q ss_pred CCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-H
Q psy8709 158 GTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-I 235 (319)
Q Consensus 158 GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~ 235 (319)
|++.+.+.+.+++.+.+...+....++.++.+.+.+++.+.. .++.+|||+|||+|.++..++..++.+|+++|.++ +
T Consensus 9 ~~~~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a 88 (199)
T PRK10909 9 GSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAV 88 (199)
T ss_pred CCCCEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHH
Confidence 445566777778888888777777899999998888887643 56789999999999999976666677999999999 9
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCc
Q psy8709 236 AYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFT 310 (319)
Q Consensus 236 i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t 310 (319)
++.++++++.++. .+++++++|+.+.. ...++||+|++++++.. .....++..+. .+|+|+|++++++..
T Consensus 89 ~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 89 AQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFRK----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCCC----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 9999999999987 58999999987642 22357999999999532 23344445444 458999999988755
No 33
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=1.3e-14 Score=115.36 Aligned_cols=108 Identities=24% Similarity=0.288 Sum_probs=90.0
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEeccch
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEWMG 278 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~ 278 (319)
|.+|||+|||+|.++..+++.+..+++|+|+++ .++.++.++..++..++++++++|+.+.. ++.++||+|++|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999998767999999999 99999999999988889999999998875 667899999999987
Q ss_pred hhhcc-----hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 279 YFLLF-----ETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 279 ~~l~~-----~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..... ......+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 53211 12457889999999999999987654
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=3.5e-14 Score=131.05 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=88.0
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.+++++..+++ ++++...|+....+ .++||+|++..++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999988877 68888889877655 4789999999887
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+++. .+....+++++.++|+|||++++
T Consensus 195 ~~l~-~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 195 MFLN-RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 7754 45778999999999999999654
No 35
>KOG1270|consensus
Probab=99.54 E-value=7.9e-15 Score=129.74 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=85.5
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-----cEEEEEcCccccccCCCceeEEEec
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-----QIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-----~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
|++|||+|||+|.++..+++.|+ .|+|||+++ |++.|++......... ++.+.+.+++... ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 47899999999999999999986 999999999 9999998855443322 3667777777654 459999987
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
-+..+. .++..++..+.+.|||||.+++++..-
T Consensus 166 evleHV---~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV---KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH---hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 775544 889999999999999999999887653
No 36
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.54 E-value=1e-13 Score=117.72 Aligned_cols=123 Identities=24% Similarity=0.255 Sum_probs=107.8
Q ss_pred CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
.+++.++++...+..+.+.++..++|||||||.++..++.. +..+|+++|.++ +++..++|+++.+. +|++++.+++
T Consensus 15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~A 93 (187)
T COG2242 15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDA 93 (187)
T ss_pred CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccc
Confidence 45788999999999999999999999999999999999964 567999999999 99999999999996 8999999999
Q ss_pred cccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 260 ~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.+......++|.|+.... ..++.+++.+...|||||+++.+..|+.
T Consensus 94 p~~L~~~~~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 94 PEALPDLPSPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred hHhhcCCCCCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 876433347999996543 4578899999999999999999988764
No 37
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.54 E-value=7.2e-14 Score=132.76 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=94.5
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCC--CcEEEEEcCccccccC
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYD--SQIEVYHKLLEDVELP 265 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~--~~i~~i~~d~~~~~~~ 265 (319)
.+.+++.++...+.+|||+|||+|.++..+++. +..+|+++|.|+ +++.++++++.++.. .+++++.+|.... .+
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 445666666555679999999999999999885 456999999999 999999999888653 3789999888653 33
Q ss_pred CCceeEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 266 VESVDIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.++||+|+||+++|... ......+++..+.++|+|||.+++..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 46899999999987542 22345788999999999999999764
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=5.2e-14 Score=128.79 Aligned_cols=106 Identities=26% Similarity=0.374 Sum_probs=90.5
Q ss_pred cCCCcceeeccCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
..++.+|||+|||+|..+..+++. +. .+|+|+|+++ +++.|+++....+. ++++++.+|+++++++.++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEc
Confidence 445689999999999988877763 43 4899999999 99999999888887 58999999999988877899999998
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.++++. .+...+++++.++|||||++++..
T Consensus 154 ~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLS---PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 876654 456789999999999999999864
No 39
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=5e-14 Score=127.84 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=91.7
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV 266 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~ 266 (319)
..+.++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.++++. .++.++.+|+.++. +.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CC
Confidence 4455666667777889999999999999999875 456999999999 999887653 46889999998764 34
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
++||+|+++.+++++ .+...+++++.+.|||||.+++...
T Consensus 92 ~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 689999999888776 4567899999999999999998653
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.53 E-value=3.1e-14 Score=110.76 Aligned_cols=95 Identities=17% Similarity=0.322 Sum_probs=79.1
Q ss_pred eeeccCCCchHHHHHHHc---C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec-cch
Q psy8709 205 VIDVGAGTGILSIFAAQA---G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE-WMG 278 (319)
Q Consensus 205 VLDiGcGtG~ls~~la~~---g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~-~~~ 278 (319)
|||+|||+|..+..+++. + ..+++|+|+|+ |++.++++....+. +++++++|+.+++...++||+|++. .+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999986 2 26999999999 99999999887665 8899999999988777899999994 435
Q ss_pred hhhcchhhHHHHHHHHhcccCCCc
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDG 302 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG 302 (319)
++ ...+....+++++.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 55 566788999999999999998
No 41
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.52 E-value=3.8e-14 Score=126.26 Aligned_cols=110 Identities=24% Similarity=0.311 Sum_probs=94.3
Q ss_pred CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEecc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEW 276 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~ 276 (319)
...+|||+|||+|.+++.++++ ...+++|||+.+ +.+.|+++++.+++.++++++++|+.++. .+..+||+|+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 3589999999999999999997 557999999999 99999999999999999999999998874 3345799999999
Q ss_pred chhhhcch---------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 277 MGYFLLFE---------------TMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 277 ~~~~l~~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+++-.... ..++.+++.+.++|||||.+.+-...
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 98754322 23788999999999999999865543
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=7.2e-14 Score=137.68 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=92.4
Q ss_pred HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI 271 (319)
Q Consensus 193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~ 271 (319)
++..+...++.+|||+|||+|..+..+++....+|+|+|+|+ ++..|+++.. +...+++++.+|+.+.+++.++||+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEE
Confidence 334444566789999999999999988885445999999999 9999987765 3335899999999988887789999
Q ss_pred EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
|+|..+.+++ .+...++++++++|||||.++++..
T Consensus 336 I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 336 IYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9998776555 5678999999999999999998754
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=120.56 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=101.2
Q ss_pred CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL 258 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d 258 (319)
.+++.++++...+..+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++.+++.+++.++.+|
T Consensus 21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d 100 (198)
T PRK00377 21 IPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100 (198)
T ss_pred CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 34566777777778888889999999999999999998874 346999999999 999999999998866789999999
Q ss_pred ccccc-cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 259 LEDVE-LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 259 ~~~~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+.+.. ...++||.|+++.. ...+..+++.+.+.|+|||+++++.+++
T Consensus 101 ~~~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 101 APEILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred hhhhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 87642 22368999997542 1456788999999999999999876654
No 44
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.52 E-value=4.6e-14 Score=120.86 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=88.5
Q ss_pred cccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709 195 NNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII 273 (319)
Q Consensus 195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii 273 (319)
..++...-.++||+|||.|.++..++.+ +.+++++|+|+ .++.|++++... ++|+++++++.+.. |.++||+|+
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-P~~~FDLIV 111 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-PEGRFDLIV 111 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-CCCCeeEEE
Confidence 3466666679999999999999999998 46999999999 999999888643 68999999998764 568999999
Q ss_pred eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..-++|++...+++..++..+...|+|||.+++.+.
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999998778899999999999999999998664
No 45
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.52 E-value=8.4e-14 Score=125.07 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=90.2
Q ss_pred CCcceeeccCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW 276 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~ 276 (319)
++.+|||+|||+|.++..+++. +..+++|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 5579999999999999988874 356999999999 9999999988776656899999999987764 589999988
Q ss_pred chhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+.+++.. .....+++++++.|+|||.+++...
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 8777643 4578899999999999999998753
No 46
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.52 E-value=9.4e-14 Score=127.82 Aligned_cols=114 Identities=27% Similarity=0.351 Sum_probs=86.1
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
.+++.-..+.+... ..++++|||+|||+|.+++.+++.|+++|+|+|+++ .++.|++|+..|++.+++.+. ...
T Consensus 145 H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~- 219 (295)
T PF06325_consen 145 HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE- 219 (295)
T ss_dssp CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS-
T ss_pred CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec-
Confidence 34444444444443 345689999999999999999999999999999999 999999999999998877653 121
Q ss_pred cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
....++||+|++|... +.+..++..+.++|+|||++++|-
T Consensus 220 -~~~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 220 -DLVEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp -CTCCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred -ccccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 2234899999999764 345677888899999999999764
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=2e-13 Score=118.06 Aligned_cols=118 Identities=29% Similarity=0.333 Sum_probs=96.6
Q ss_pred CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
.+...+.++..+++.+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++..++. .+++++.+|.
T Consensus 12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~ 90 (187)
T PRK08287 12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEA 90 (187)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCc
Confidence 44566777888888888788899999999999999999885 446999999999 99999999988877 5799999987
Q ss_pred cccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 260 ~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.. .++ ++||+|+++... ..+..++..+.+.|+|||+++++.
T Consensus 91 ~~-~~~-~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 91 PI-ELP-GKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hh-hcC-cCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 53 333 689999986542 234678889999999999999864
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=1.7e-13 Score=120.43 Aligned_cols=115 Identities=22% Similarity=0.188 Sum_probs=91.3
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
...+...+++.+...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|..+.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 3445566667777778889999999999999888874 2 45999999999 9999999999988866799999999775
Q ss_pred ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..+..+||+|+++....++ ..++.+.|+|||++++...
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI---------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CccCCCccEEEEccCcchh---------hHHHHHhcCcCcEEEEEEc
Confidence 4445789999987654322 2456789999999986543
No 49
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=9.9e-14 Score=126.75 Aligned_cols=117 Identities=26% Similarity=0.326 Sum_probs=88.8
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
.+++.-..+++-+... ++++|||+|||+|.+++.+++.|+.+|+|+|++| .++.+++|+..|+....++....+...
T Consensus 146 HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 146 HPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred ChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 3444444444443333 6789999999999999999999999999999999 999999999999985433333333332
Q ss_pred cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.+ ..++||+|++|-.- +.+..+...+.+.|||||+++++-
T Consensus 224 ~~-~~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 224 VP-ENGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred hc-ccCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEEe
Confidence 22 23699999998743 445688889999999999999874
No 50
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.50 E-value=3.1e-13 Score=124.84 Aligned_cols=101 Identities=30% Similarity=0.417 Sum_probs=85.0
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY 279 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~ 279 (319)
++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++..++.+..++... ...++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH-
Confidence 5689999999999999999988888999999999 999999999999887778877776432 334689999998653
Q ss_pred hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..+..++.++.++|||||+++++..
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3456788999999999999998754
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.50 E-value=8.4e-14 Score=122.07 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=88.4
Q ss_pred CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cccc--cCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDVE--LPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~~--~~~~~fD~Iis~ 275 (319)
++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.+.+++..++. .++.++++|+ +.++ ++.++||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4579999999999999999875 456899999999 99999999988887 6899999999 6665 566789999987
Q ss_pred cchhhhcch-----hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 276 WMGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 276 ~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.+..|.... .....+++++.++|||||.+++.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 654332110 12467899999999999999987654
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=1.3e-13 Score=118.44 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=88.4
Q ss_pred ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709 198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW 276 (319)
Q Consensus 198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~ 276 (319)
...++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. +++++.+|+.+.. .++||+|++++
T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~ 90 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNP 90 (179)
T ss_pred HhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECC
Confidence 344557899999999999999999876 999999999 99999999988775 6889999986643 35899999998
Q ss_pred chhhhcc------------------hhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 277 MGYFLLF------------------ETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 277 ~~~~l~~------------------~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+++.... ......++.++.++|+|||.+++...+.
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 8754321 1125678999999999999998765443
No 53
>PRK08317 hypothetical protein; Provisional
Probab=99.50 E-value=2.9e-13 Score=120.44 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=97.9
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
..+.+.+...+...++.+|||+|||+|.++..+++. +..+++|+|+++ +++.++++... ...+++++.+|+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC
Confidence 455666777778888899999999999999999885 346999999999 98888877332 2368999999998887
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
++.++||+|++..+.+++ .+...+++++.++|+|||.+++..+.
T Consensus 83 ~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 777899999988776555 56788999999999999999977653
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=1.1e-13 Score=122.79 Aligned_cols=103 Identities=19% Similarity=0.194 Sum_probs=88.7
Q ss_pred cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF 280 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~ 280 (319)
++|||+|||+|.++..+++. +..+|+|+|+|+ +++.+++++...++.++++++.+|+...+++ ++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 36999999999999998885 346999999999 9999999999888888999999999766555 68999998777666
Q ss_pred hcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 281 LLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+ .+...+++++.++|+|||.+++...
T Consensus 80 ~---~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I---KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C---CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 5 4578999999999999999997654
No 55
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.49 E-value=9.8e-14 Score=116.01 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=82.8
Q ss_pred HHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709 190 KSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE 267 (319)
Q Consensus 190 ~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~ 267 (319)
.+.+....+ ..++.+|||+|||+|.++..+++.|. +++|+|+++ +++. .++.....+......+.+
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhcccc
Confidence 333333333 56678999999999999999988877 999999999 7766 123333333334445668
Q ss_pred ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+||+|+|..+.+++ .++..+++.+.++|||||+++++....
T Consensus 78 ~fD~i~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 78 SFDLIICNDVLEHL---PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SEEEEEEESSGGGS---SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred chhhHhhHHHHhhc---ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999998888777 568999999999999999999887764
No 56
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.48 E-value=2.8e-13 Score=127.42 Aligned_cols=122 Identities=20% Similarity=0.146 Sum_probs=100.9
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
..+...+.+.....++.+|||+|||+|.++..++..+. +++|+|+++ |+..++.+++..++.+ +.++.+|+.+++++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS 245 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc
Confidence 55666777777778888999999999999988877755 999999999 9999999999988854 89999999998877
Q ss_pred CCceeEEEeccchhhhc------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 266 VESVDIIISEWMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.++||+|++++++.... .......++.++.++|+|||++++..++
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 78999999998753211 1133688999999999999998876554
No 57
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.48 E-value=1.7e-13 Score=118.05 Aligned_cols=145 Identities=21% Similarity=0.184 Sum_probs=109.4
Q ss_pred HHHHhcCCceEEeeecCCCcccHHHHHHHHhccccc--CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q psy8709 164 IFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL--FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETI 240 (319)
Q Consensus 164 i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~ 240 (319)
+.+++++++.+..++...++++++.+++.+++.+.. ..+.++||+.||+|.++..++.+|+.+|+.||.++ .+...+
T Consensus 3 Ii~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~ 82 (183)
T PF03602_consen 3 IIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK 82 (183)
T ss_dssp --SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH
T ss_pred EEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 455678899999999999999999999999999886 48899999999999999999999999999999999 999999
Q ss_pred HHHHhcCCCCcEEEEEcCccccc--c--CCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCcc
Q psy8709 241 DIIRKNKYDSQIEVYHKLLEDVE--L--PVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFTL 311 (319)
Q Consensus 241 ~~~~~~g~~~~i~~i~~d~~~~~--~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t~ 311 (319)
+|++..+..++++++.+|+...- . ...+||+|+.++|+..-. ....++..+. .+|+++|.+++.+..-
T Consensus 83 ~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 83 KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH---HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch---HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99999988778999999975432 2 458999999999875421 1355666665 8999999999887543
No 58
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=6.3e-13 Score=118.27 Aligned_cols=111 Identities=21% Similarity=0.210 Sum_probs=88.6
Q ss_pred cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
....++.+|||+|||+|.++..+++.+..+++++|+++ +++.+++++..++. +++++.+|+.+. ++.++||+|+++
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~n 108 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSN 108 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEEC
Confidence 34566789999999999999999987767999999999 99999999988776 588999998764 455789999999
Q ss_pred cchhhhcc------------------hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 276 WMGYFLLF------------------ETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 276 ~~~~~l~~------------------~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+++..... ...+..++.++.++|||||++++...+
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 86542111 112567889999999999999975433
No 59
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=4.7e-13 Score=118.20 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=91.8
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
....+...+++.+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.++++++..+. .+++++.+|...
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~ 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTL 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCccc
Confidence 44566677777778888999999999999999988885 3 35999999999 99999999998887 689999999987
Q ss_pred cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
...+..+||+|++..... .+...+.+.|||||++++...
T Consensus 139 ~~~~~~~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcCCCcCEEEECCCcc---------cchHHHHHhhCCCcEEEEEEc
Confidence 655567899999865321 122355668999999987543
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.46 E-value=6.9e-13 Score=117.33 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=90.8
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
......+++.+...++.+|||+|||+|.++..+++.. ..+|+++|+++ +++.|+++++.+++ ++++++.+|..+..
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC
Confidence 4455666677777888999999999999999998863 24699999999 99999999999988 78999999997754
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
....+||+|+++.... .+...+.+.|+|||++++...+
T Consensus 142 ~~~~~fD~Ii~~~~~~---------~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGP---------KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred cccCCCCEEEEcCCcc---------cccHHHHHhcCcCcEEEEEEcC
Confidence 4446899999865422 2234567789999999876543
No 61
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.46 E-value=8.4e-13 Score=115.08 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=97.0
Q ss_pred CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
.++........+...+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++.++. .+++++.+|+
T Consensus 21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~ 99 (196)
T PRK07402 21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSA 99 (196)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECch
Confidence 45667777878888888888899999999999999998874 446999999999 99999999998887 5799999998
Q ss_pred ccc-ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 260 EDV-ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 260 ~~~-~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
.+. ......+|.++... ...+..++.++.++|+|||.+++...+.
T Consensus 100 ~~~~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 652 21123457766432 1345788999999999999999887654
No 62
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.46 E-value=1.9e-14 Score=111.36 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=62.8
Q ss_pred eeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-c-CCCceeEEEeccchhhh
Q psy8709 206 IDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-L-PVESVDIIISEWMGYFL 281 (319)
Q Consensus 206 LDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~-~~~~fD~Iis~~~~~~l 281 (319)
||+|||+|.++..+.+. +..+++|+|+|+ |++.+++++...+. .+...+..+..+.. . +.++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999998885 556999999999 99888888887764 34444444444332 1 12599999998888877
Q ss_pred cchhhHHHHHHHHhcccCCCcEE
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVV 304 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~l 304 (319)
+++..+++.++++|+|||+|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 77889999999999999986
No 63
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=7.5e-13 Score=122.05 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=98.9
Q ss_pred CcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709 182 TPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL 258 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d 258 (319)
.++.++.+.+.++..+. ..+..+|||+|||+|.++..++.. +..+|+|+|+|+ +++.|+++++.+++.++++++.+|
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34556777777665542 222368999999999999999985 346999999999 999999999999886679999999
Q ss_pred ccccccCCCceeEEEeccchhhhc----------ch------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 259 LEDVELPVESVDIIISEWMGYFLL----------FE------------TMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 259 ~~~~~~~~~~fD~Iis~~~~~~l~----------~~------------~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+.+. ++..+||+|++|+++.... ++ ..+..++..+.++|+|||++++....
T Consensus 174 ~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 174 LFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred hhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 8763 3434899999997653210 11 24677899999999999999987764
No 64
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.45 E-value=1e-12 Score=121.16 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=94.2
Q ss_pred cHHHHHHHHhc-ccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 185 RTESYKSAILN-NKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 185 ~~~~~~~~i~~-~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
.++.+....+. .+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++.++++++.+|+.+
T Consensus 104 ~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 104 PIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred chHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 33444433332 232234568999999999999999985 446999999999 999999999999987789999999865
Q ss_pred cccCCCceeEEEeccchhhh----------cch------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 262 VELPVESVDIIISEWMGYFL----------LFE------------TMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 262 ~~~~~~~fD~Iis~~~~~~l----------~~~------------~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
. ++.++||+|++|+++.-. .++ .....++..+.++|+|||+++++...
T Consensus 184 ~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 184 A-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred c-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 3 344689999999875311 011 23467899999999999999987653
No 65
>PRK06922 hypothetical protein; Provisional
Probab=99.45 E-value=6.2e-13 Score=132.31 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=91.1
Q ss_pred cccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEE
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDII 272 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~I 272 (319)
....++.+|||+|||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ ++.++||+|
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEE
Confidence 3445678999999999999888887 4556999999999 9999998876554 47889999998876 667899999
Q ss_pred Eeccchhhhc----------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 273 ISEWMGYFLL----------FETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 273 is~~~~~~l~----------~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+++++.|++. ....+..+++++.++|||||.+++...
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998777542 135678999999999999999998653
No 66
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=4.9e-13 Score=119.08 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=85.2
Q ss_pred CCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
++.+|||+|||+|.++..+++.+ ..+++++|+++ ++..+.+... +++.++.+|+.+.+++.++||+|+++.+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 34689999999999999998864 45799999999 8887776543 37889999999888777899999998887
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+++ .++..++.++.++|+|||.+++...
T Consensus 109 ~~~---~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 109 QWC---DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhc---cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 765 5678899999999999999998653
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=99.45 E-value=7.9e-12 Score=114.61 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=84.0
Q ss_pred CcceeeccCCCchHH-HHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHh-cCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709 202 NKHVIDVGAGTGILS-IFAA-QA-GAAKVFAIEKSD-IAYETIDIIRK-NKYDSQIEVYHKLLEDVELPVESVDIIISEW 276 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls-~~la-~~-g~~~V~gvD~s~-~i~~a~~~~~~-~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~ 276 (319)
+++|+|||||.|.++ ..++ .. +.++++|+|.++ +++.|++.+.. .++.++++|..+|+.+.....+.||+|++..
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~A 203 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAA 203 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEec
Confidence 378999999977443 3333 33 556899999999 99999999964 7887889999999987643347899999984
Q ss_pred chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
..++ . .....+++..+.+.|+|||.+++....
T Consensus 204 Li~~-d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 204 LVGM-D-KEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred cccc-c-cccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 3332 1 256789999999999999999987643
No 68
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.45 E-value=7.7e-13 Score=117.93 Aligned_cols=116 Identities=21% Similarity=0.246 Sum_probs=94.1
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV 266 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~ 266 (319)
...++..+...++.+|||+|||+|.++..++..+ ..+++++|+++ +++.+++++..++...++.++.+|+.+.+.+.
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3344444455567899999999999999998865 47999999999 99999998877666678999999998877666
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
++||+|++....++. .++..++.++.+.|+|||.+++..
T Consensus 120 ~~~D~I~~~~~l~~~---~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 120 NSFDAVTIAFGLRNV---PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCccEEEEecccccC---CCHHHHHHHHHHhccCCcEEEEEE
Confidence 789999976554433 567889999999999999988643
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=7.2e-13 Score=124.94 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=90.8
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES 268 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~ 268 (319)
+.+++.+......+|||+|||+|.++..+++. +..+|+++|+|+ +++.++++++.+++ ..+++.+|+... . .++
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~-~-~~~ 261 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD-I-KGR 261 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc-c-CCC
Confidence 34444444444568999999999999999986 446999999999 99999999999887 356777887552 2 478
Q ss_pred eeEEEeccchhhhcc--hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 269 VDIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 269 fD~Iis~~~~~~l~~--~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
||+|+||+++|.... ......++.++.++|||||.+++...+
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 999999999875322 245688999999999999999865443
No 70
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.44 E-value=6.4e-13 Score=124.63 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=91.4
Q ss_pred HHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 186 TESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 186 ~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
++.+.+.++..... .++.+|||+|||+|.++..+++. +..+|+++|+|+ |++.|+++... .+++++.+|+++.
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l 172 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL 172 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC
Confidence 34555555555444 35679999999999999888774 456999999999 99998876542 4678999999998
Q ss_pred ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
+++.++||+|+++.+.+++ .+...+++++.++|+|||.+++.
T Consensus 173 p~~~~sFDvVIs~~~L~~~---~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 173 PFPTDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCCCCceeEEEEcChhhhC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 8887899999998776654 45568999999999999998764
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.44 E-value=9.8e-13 Score=116.56 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHHHhcccc--cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKS--LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
+.+.+.+++.+. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+ ++..|++++...+...++++..+|+.+.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 344555555544 45678999999999999999998755 999999999 99999999888776568999999998765
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
++||+|++....+++ ....+..++.++.+++++++++.+...+
T Consensus 118 ---~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred ---CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 689999986655544 2355778899999999988877765443
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=5.9e-13 Score=115.97 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=87.9
Q ss_pred CcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEecc
Q psy8709 202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISEW 276 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~~ 276 (319)
..++||+|||+|.++..+++. +..+++|+|+++ +++.|.+++...++ .+++++++|+.++. ++.+.+|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 468999999999999988884 556999999999 99999999988888 58999999998653 4456899999887
Q ss_pred chhhhcch-----hhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 277 MGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 277 ~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+..|.... -....+++++.++|||||.+++.+-+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 65443211 112578999999999999999776443
No 73
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=121.16 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=86.8
Q ss_pred cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF 280 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~ 280 (319)
.+|||+|||+|.++..++.. +..+|+++|+|+ +++.|+++++.+++.++++++++|+.+. ++.++||+|++|+++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 68999999999999999885 456999999999 9999999999998877899999998653 34468999999986531
Q ss_pred h----------cc------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 281 L----------LF------------ETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 281 l----------~~------------~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
. .+ ......++..+.++|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 01 12346789999999999999998654
No 74
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=1e-12 Score=125.84 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=94.0
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
......+...+...++.+|||+|||+|.++..+++....+|+|+|+|+ +++.|+++.. +. .+++...|..++
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--- 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---
Confidence 445566777778888899999999999999999985344999999999 9999988774 33 478888888665
Q ss_pred CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.++||.|++..+++++. ...+..+++++.++|||||++++...+
T Consensus 226 ~~~fD~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCCEEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 36899999988776653 355678999999999999999987543
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.43 E-value=1.2e-12 Score=118.50 Aligned_cols=96 Identities=26% Similarity=0.368 Sum_probs=78.6
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
.++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++..++.+..++ .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcH
Confidence 45689999999999999998888877899999999 999999999988875455544332 279999987643
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..+..++.++.++|||||+++++..
T Consensus 190 ------~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 ------NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3356788999999999999998743
No 76
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=7.9e-13 Score=114.68 Aligned_cols=147 Identities=17% Similarity=0.094 Sum_probs=114.4
Q ss_pred ChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHH
Q psy8709 160 GILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAY 237 (319)
Q Consensus 160 G~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~ 237 (319)
+.+-+.+.+++.+.+..+.....+++.+.+.+.+.+.+. ...+.+|||++||+|.++..++.+|+.+|+++|.++ +++
T Consensus 7 ~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~ 86 (189)
T TIGR00095 7 KKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQ 86 (189)
T ss_pred ceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 344455567777888877777788889999988888764 346789999999999999999999988999999999 999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCcccc-c-c--CCCceeEEEeccchhhhcchhhHHHHHHHH--hcccCCCcEEEeecCc
Q psy8709 238 ETIDIIRKNKYDSQIEVYHKLLEDV-E-L--PVESVDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVVCPNRFT 310 (319)
Q Consensus 238 ~a~~~~~~~g~~~~i~~i~~d~~~~-~-~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~t 310 (319)
.++++++.++..++++++.+|+... . + ....||+|+.++++..- ....++..+ ..+|+++|.+++++..
T Consensus 87 ~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~----~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 87 TLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNG----ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCC----cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9999999998877899999999553 1 1 12358999998886432 223333333 4589999999988754
No 77
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.2e-12 Score=119.17 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=91.9
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE 267 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~ 267 (319)
.+.+++.++...+.+|||+|||.|.++..+++. +..+++-+|.+. .++.+++++..|+.. +..++..|..+- .+ +
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~-v~-~ 223 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP-VE-G 223 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc-cc-c
Confidence 456677777777779999999999999999995 567999999999 999999999999884 336666666542 23 4
Q ss_pred ceeEEEeccchhhhcc--hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 268 SVDIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~~--~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+||.|+||+++|--.. .....+++.+..+.|++||.|.+-.
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 9999999999873211 1123489999999999999987543
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=9.1e-13 Score=129.88 Aligned_cols=116 Identities=20% Similarity=0.325 Sum_probs=92.8
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc--cccCC
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED--VELPV 266 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~--~~~~~ 266 (319)
...+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.+.+. ++..++++++++|+.. .+++.
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCC
Confidence 3455666666667899999999999999999874 4999999999 98876542 2233689999999964 45667
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
++||+|+++++.+++.. ..+..++.++.++|||||++++....
T Consensus 102 ~~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 89999999998887744 45789999999999999999886543
No 79
>KOG1271|consensus
Probab=99.43 E-value=5.2e-13 Score=112.02 Aligned_cols=127 Identities=15% Similarity=0.222 Sum_probs=98.7
Q ss_pred HHHHHHHHhcccc---cCCCc-ceeeccCCCchHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 186 TESYKSAILNNKS---LFNNK-HVIDVGAGTGILSIFAAQAGAA-KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 186 ~~~~~~~i~~~l~---~~~~~-~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
.+++.+++.+... ..+.. +|||+|||+|.+...+++.|.. ..+|+|.|+ .++.|...++..++++.|+|.+.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 3555566655544 33434 9999999999999999998764 499999999 9999999999999988899999999
Q ss_pred cccccCCCceeEEEeccchhhh-----cchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 260 EDVELPVESVDIIISEWMGYFL-----LFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 260 ~~~~~~~~~fD~Iis~~~~~~l-----~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.+..+..++||+|+--..+..+ .....+...+..+.++|+|||+|++..|++-
T Consensus 128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 8876666889998854432211 1123345567888999999999999999874
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.43 E-value=1.9e-12 Score=116.62 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=95.7
Q ss_pred ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
+.+..+.+.+++.+. ..+.+|||+|||+|.++..+++. +..+++|+|+++ +++.+++++..+++ .++.++.+|+.+
T Consensus 71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhc
Confidence 445666666666554 23468999999999999999985 456999999999 99999999998888 479999999976
Q ss_pred cccCCCceeEEEeccchhhhcc-----------------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 262 VELPVESVDIIISEWMGYFLLF-----------------------ETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 262 ~~~~~~~fD~Iis~~~~~~l~~-----------------------~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.++.++||+|++++++..... ......++..+.++|+|||.+++...
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 345678999999987553110 01134788999999999999998653
No 81
>PRK05785 hypothetical protein; Provisional
Probab=99.42 E-value=8.6e-13 Score=117.67 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=75.7
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY 279 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~ 279 (319)
++.+|||+|||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++....+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 3579999999999999999887334999999999 99988753 1357899999999999999999987665
Q ss_pred hhcchhhHHHHHHHHhcccCCCc
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDG 302 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG 302 (319)
++ .+++.++++++|+|||.+
T Consensus 122 ~~---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 AS---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cc---CCHHHHHHHHHHHhcCce
Confidence 44 678899999999999953
No 82
>KOG4300|consensus
Probab=99.41 E-value=6.7e-13 Score=113.50 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=85.7
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCccccc-cCCCceeEEEeccchh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLEDVE-LPVESVDIIISEWMGY 279 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~~~~-~~~~~fD~Iis~~~~~ 279 (319)
..||++|||||..-.+.--.+...|+++|+++ |-+.+.+.++++.. .++. |+.++.++++ +++.+||+|++.....
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 47899999999887776655566999999999 99999998888855 5666 9999999997 7889999999876643
Q ss_pred hhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
. .+++.+.|+++.|+|+|||++++-
T Consensus 157 S---ve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 157 S---VEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred c---cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 377889999999999999999853
No 83
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.41 E-value=5.3e-13 Score=114.94 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=94.9
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV 269 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f 269 (319)
.++..++..+..+|.|+|||+|..+..++++ +...++|+|-|+ |++.|.+.+ .+++|..+|+.+... ...+
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p-~~~~ 93 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP-EQPT 93 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC-CCcc
Confidence 4555667777789999999999999999984 777999999999 999997654 688999999998764 4789
Q ss_pred eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709 270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC 314 (319)
Q Consensus 270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~ 314 (319)
|++++|.+++|+ .+...+|..+...|.|||.+.+.-..-+-.
T Consensus 94 dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 94 DLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred chhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCccCc
Confidence 999999999998 556678888999999999999776654433
No 84
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=2.9e-12 Score=122.36 Aligned_cols=124 Identities=21% Similarity=0.118 Sum_probs=96.9
Q ss_pred CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
.++.++.+.+.+++.+. ++.+|||+|||+|.++..++.. +..+|+|+|+|+ +++.|+++++.++. +++++++|+
T Consensus 234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 46667888888877654 4468999999999999988874 566999999999 99999999988774 799999998
Q ss_pred cccccC-CCceeEEEeccchhhhc----------------------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 260 EDVELP-VESVDIIISEWMGYFLL----------------------FETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 260 ~~~~~~-~~~fD~Iis~~~~~~l~----------------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.+...+ .++||+|+||+++.... +...+..++..+.++|+|||.+++...
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 664332 35799999999753110 011255788888899999999987654
No 85
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.40 E-value=2.2e-12 Score=127.66 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=97.9
Q ss_pred CcccHHHHHHHHhcccc------------------------cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-H
Q psy8709 182 TPIRTESYKSAILNNKS------------------------LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-I 235 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~------------------------~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~ 235 (319)
.++.++.+.+.+++.+. ..++.+|||+|||+|.++..++.. +..+|+|+|+|+ +
T Consensus 95 PRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~a 174 (506)
T PRK01544 95 PRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDA 174 (506)
T ss_pred CCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHH
Confidence 56777888887765432 113458999999999999988764 566999999999 9
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc-----------ch------------hhHHHHHH
Q psy8709 236 AYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL-----------FE------------TMIDSVID 292 (319)
Q Consensus 236 i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~-----------~~------------~~~~~~l~ 292 (319)
++.|++++..+++.+++.++.+|+.+. ++.++||+|+||+++.... ++ ..+..++.
T Consensus 175 l~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~ 253 (506)
T PRK01544 175 IEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAE 253 (506)
T ss_pred HHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHH
Confidence 999999999988877899999998642 3446899999998754211 00 22456788
Q ss_pred HHhcccCCCcEEEeecC
Q psy8709 293 ARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 293 ~~~r~LkpgG~li~~~~ 309 (319)
.+.++|+|||.+++...
T Consensus 254 ~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 254 NAKQFLKPNGKIILEIG 270 (506)
T ss_pred HHHHhccCCCEEEEEEC
Confidence 89999999999998643
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=99.39 E-value=4.1e-12 Score=109.28 Aligned_cols=111 Identities=24% Similarity=0.292 Sum_probs=87.7
Q ss_pred cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCc-EEEEEcCccccccCCCceeEEEecc
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQ-IEVYHKLLEDVELPVESVDIIISEW 276 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~-i~~i~~d~~~~~~~~~~fD~Iis~~ 276 (319)
..++.+|||+|||+|.++..+++.+ .+++|+|.|+ +++.+++++..++..++ +.++.+|+.+. ++..+||+|++++
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECC
Confidence 3566899999999999999999884 5999999999 99999999988877433 88999988764 3445899999987
Q ss_pred chhhhc------------------chhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 277 MGYFLL------------------FETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 277 ~~~~l~------------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
++.... ....+..+++++.++|+|||.+++...+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 653210 12335678999999999999988765543
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=3.2e-12 Score=124.37 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=95.1
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCC
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVE 267 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~ 267 (319)
.+...+...++.+|||+|||+|..+..+++.. ..+|+++|+++ ++..++++++.+|+ +++++.+|+.+.. ++.+
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccC
Confidence 33445566788999999999999999998863 36999999999 99999999999887 3789999997653 2346
Q ss_pred ceeEEEeccchhh------------hcchh-------hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 268 SVDIIISEWMGYF------------LLFET-------MIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 268 ~fD~Iis~~~~~~------------l~~~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
+||.|+++++... ..... ....++..+.++|||||.+++++|+++.
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 8999998876432 11111 2357899999999999999999998764
No 88
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.38 E-value=2.7e-12 Score=117.09 Aligned_cols=116 Identities=19% Similarity=0.074 Sum_probs=93.7
Q ss_pred cccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII 273 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii 273 (319)
+...++.+|||+|||+|..+..+++. + ...|+++|+++ +++.++++++.+++ .+++++..|...+....++||.|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEE
Confidence 45567789999999999999998874 2 35899999999 99999999999988 579999999887654456799999
Q ss_pred eccchhhh------------cchh-------hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 274 SEWMGYFL------------LFET-------MIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 274 s~~~~~~l------------~~~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
++++.... ..+. ....+|..+.++|||||+++.++|++..
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 88764422 1111 2346899999999999999999999764
No 89
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.38 E-value=4.2e-12 Score=111.99 Aligned_cols=114 Identities=22% Similarity=0.247 Sum_probs=91.2
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
+...++..+...++.+|||+|||+|.++..+++... .+++++|+++ ++..++++.. ...+++++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 344455555555778999999999999999988644 4899999999 8888887765 335789999999988776
Q ss_pred CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.++||+|+++...++. .++..+++++.+.|+|||.+++..
T Consensus 104 ~~~~D~i~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNV---TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCcEEEEEEeeeeCCc---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6789999986654433 567889999999999999998644
No 90
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.38 E-value=4.6e-12 Score=111.87 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc-----------CCCCcEEEEEcCccccccC-C
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN-----------KYDSQIEVYHKLLEDVELP-V 266 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~-----------g~~~~i~~i~~d~~~~~~~-~ 266 (319)
.++.+|||+|||.|..+..++++|. +|+|+|+|+ +++.+.+..... ....+++++++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4567999999999999999999988 899999999 888754321100 0124789999999887642 3
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+.||.|+....++++ ..+....++..+.++|||||++++.+
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 579999976665554 45677889999999999999765443
No 91
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.37 E-value=2.4e-12 Score=117.36 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCCcceeeccCCCch----HHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHh----cC-----------------
Q psy8709 200 FNNKHVIDVGAGTGI----LSIFAAQAG------AAKVFAIEKSD-IAYETIDIIRK----NK----------------- 247 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~----ls~~la~~g------~~~V~gvD~s~-~i~~a~~~~~~----~g----------------- 247 (319)
.++.+|+|+|||||. +++.+++.+ ..+|+|+|+|+ |++.|++.+.. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999995 555565531 24899999999 99999874310 01
Q ss_pred -----CCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 248 -----YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 248 -----~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+..+++|.++|+.+.+++.++||+|+|..+.+++. .+....+++++++.|+|||++++....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 12478999999998777678999999977776653 356778999999999999999976544
No 92
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.37 E-value=5.3e-12 Score=107.82 Aligned_cols=146 Identities=19% Similarity=0.212 Sum_probs=118.9
Q ss_pred HHhcCCceEEeeecCCCcccHHHHHHHHhccccc--CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q psy8709 166 AAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL--FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDI 242 (319)
Q Consensus 166 aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~ 242 (319)
.++++++.+-.++...++++++.+++.+++.+.. ..+.++||+-+|+|.++..++.+|+.+++.||.+. .....++|
T Consensus 6 ~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N 85 (187)
T COG0742 6 GGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN 85 (187)
T ss_pred eccccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH
Confidence 4567778888888899999999999999999976 78899999999999999999999999999999999 99999999
Q ss_pred HHhcCCCCcEEEEEcCcccc--ccCC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 243 IRKNKYDSQIEVYHKLLEDV--ELPV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 243 ~~~~g~~~~i~~i~~d~~~~--~~~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
++..+...+++++..|+... .... ++||+|+.+++++.-.......-..-.-..+|+|+|.+++.+..-
T Consensus 86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 99988878999999999844 2222 259999999997732121122222222568899999999887755
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.37 E-value=6.3e-12 Score=110.85 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=90.3
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
....+...++..+...++.+|||+|||+|.++..+++.. .+|+++|.++ +++.++++++..++ .+++++.+|..+..
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGW 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCC
Confidence 345566677777778888999999999999999888874 4899999999 99999999998887 56999999986543
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.+.++||+|++...... +...+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 33478999998654322 23456789999999987654
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.37 E-value=5.9e-12 Score=117.26 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=94.3
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES 268 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~ 268 (319)
.+.+.+.....++.+|||+|||+|.++..+++. +..+++++|..++++.+++++...++.++++++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 445556666777789999999999999999885 5569999998559999999999999888999999999875555 3
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+|+|++..+.|.. ..+....+++++++.|+|||++++...
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6998866555543 334567899999999999999987654
No 95
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=7.4e-12 Score=114.50 Aligned_cols=125 Identities=20% Similarity=0.162 Sum_probs=97.1
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE 260 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~ 260 (319)
++.++.+.+.+.......++.+|||+|||+|.++..++.. +..+++|+|+++ +++.+++++. +....++.++.+|+.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 4556777777776666667789999999999999999885 456999999999 9999999887 334468999999986
Q ss_pred ccccCCCceeEEEeccchhhhc-----------------------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 261 DVELPVESVDIIISEWMGYFLL-----------------------FETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 261 ~~~~~~~~fD~Iis~~~~~~l~-----------------------~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+.. +.++||+|++++++.... .......++.++.++|+|||.+++...
T Consensus 169 ~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 169 EPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 532 347899999998753210 112356788889999999999998653
No 96
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=4.3e-12 Score=123.67 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=97.0
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---- 263 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---- 263 (319)
..+...+...++.+|||+|||+|..+..+++. +.++|+++|+++ +++.++++++..|+ .+++++++|+.+..
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccc
Confidence 33444466778899999999999999998884 345999999999 99999999999998 56999999998765
Q ss_pred cCCCceeEEEeccchhhhc----c--------hh-------hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 264 LPVESVDIIISEWMGYFLL----F--------ET-------MIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~----~--------~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
...++||.|+++++..... + .. ....++.++.++|||||+++.++|+++.
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 3346899999876532210 0 11 1467899999999999999999999863
No 97
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.36 E-value=3e-12 Score=122.91 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=92.7
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc--c--CCCceeEEE
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE--L--PVESVDIII 273 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~--~--~~~~fD~Ii 273 (319)
.++++|||+|||+|.++..++..++.+|+++|+|+ +++.|++++..|++. ++++++++|+.+.. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 35689999999999999887777777999999999 999999999999985 48999999997752 1 245899999
Q ss_pred eccchhhhcc------hhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709 274 SEWMGYFLLF------ETMIDSVIDARNRFLKPDGVVCPNRFTLSLC 314 (319)
Q Consensus 274 s~~~~~~l~~------~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~ 314 (319)
++++.+.-.. ...+..++..+.++|+|||.++..+|+-++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 9998642211 1235566777889999999999988876543
No 98
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.35 E-value=5e-12 Score=122.96 Aligned_cols=123 Identities=13% Similarity=0.050 Sum_probs=94.7
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc--C
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL--P 265 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~--~ 265 (319)
...+...+...++.+|||+|||+|..+..+++. +.++|+|+|+++ +++.++++++..|+..++++..+|...... +
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 344455567778899999999999999999884 446999999999 999999999999885344557777665443 4
Q ss_pred CCceeEEEeccchhhhc---c---------h-------hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 266 VESVDIIISEWMGYFLL---F---------E-------TMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~---~---------~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.++||.|+++++..... . . .....+|.++.++|||||.++.++||+.
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 56899999875433211 0 0 1146789999999999999999999985
No 99
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.35 E-value=1.5e-11 Score=109.04 Aligned_cols=103 Identities=26% Similarity=0.294 Sum_probs=85.5
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchh
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGY 279 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~ 279 (319)
+.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+. .++++..+++.+.+.+ .++||+|++..+.+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 47999999999999998888765 799999999 99999988877665 3688999998776543 36899999876655
Q ss_pred hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+. ..+..++.++.++|+|||.+++..+
T Consensus 124 ~~---~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HV---PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hC---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 54 5677899999999999999998764
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.35 E-value=6.3e-12 Score=119.28 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=90.6
Q ss_pred cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEe
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIIS 274 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis 274 (319)
...+..+||||||+|.++..+++. +...++|+|+++ ++..+.+++..+++ .++.++.+|+..+ .++.+++|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 344579999999999999999985 556999999999 99999999999888 6899999999764 466789999999
Q ss_pred ccchhhhcchh---hHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 275 EWMGYFLLFET---MIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 275 ~~~~~~l~~~~---~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+.+..|..... ....++.++.|+|+|||.+.+.+-.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 87665532211 1368899999999999999876543
No 101
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=7.7e-12 Score=122.27 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=93.0
Q ss_pred cccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709 195 NNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI 271 (319)
Q Consensus 195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~ 271 (319)
..+...++.+|||+|||+|..+..+++. +..+|+++|+++ +++.++++++..|+ .+++++.+|+.... +.++||.
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCE
Confidence 3455667889999999999999888873 345999999999 99999999999988 57999999998765 4468999
Q ss_pred EEeccchhhh------------cchh-------hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 272 IISEWMGYFL------------LFET-------MIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 272 Iis~~~~~~l------------~~~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
|+++++.... .... ....+|..+.++|||||++++++|++.
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9986543211 1111 234689999999999999999999985
No 102
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.34 E-value=6.6e-12 Score=110.23 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=79.5
Q ss_pred CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM 277 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~ 277 (319)
.++.+|||+|||+|.++..+++. +..+++|+|+|+ +++.|+++. .++.++++|+.+ +++.++||+|+++.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 35578999999999999999885 556999999999 999887653 356788899887 677789999999988
Q ss_pred hhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 278 GYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.+++. ...+..+++++.+++ ++++++.
T Consensus 115 L~hl~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 115 LIHIN-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred hhhCC-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 87764 467889999999997 4455543
No 103
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=6.8e-12 Score=122.00 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=96.0
Q ss_pred HhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCc
Q psy8709 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVES 268 (319)
Q Consensus 193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~ 268 (319)
+...+...++.+|||+|||+|..+..++.. +..+|+++|+++ +++.++++++..|+ .+++++.+|+..++ ...++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYVQDT 307 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhhhcc
Confidence 333456677889999999999999988884 346999999999 99999999999988 56999999998765 33468
Q ss_pred eeEEEeccchhhhcc------------h-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 269 VDIIISEWMGYFLLF------------E-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 269 fD~Iis~~~~~~l~~------------~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
||.|+++++...+.. . ....++|.++.++|||||.+++++||+..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 999998776532211 0 12366799999999999999999999753
No 104
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.2e-11 Score=113.66 Aligned_cols=125 Identities=21% Similarity=0.199 Sum_probs=96.3
Q ss_pred CCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709 181 GTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL 258 (319)
Q Consensus 181 ~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d 258 (319)
..++.++.+.+.++........ +|||+|||+|.++..++.. +...|+|+|+|+ .++.|++|+..+++ .++.++.+|
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~d 168 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSD 168 (280)
T ss_pred ecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeee
Confidence 3456677787776633333333 7999999999999999996 446999999999 99999999999998 677777777
Q ss_pred ccccccCCCceeEEEeccchhhhc----------c------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 259 LEDVELPVESVDIIISEWMGYFLL----------F------------ETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 259 ~~~~~~~~~~fD~Iis~~~~~~l~----------~------------~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..+- .+ ++||+|+||+++---. + ......++..+.++|+|||.+++...
T Consensus 169 lf~~-~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 169 LFEP-LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccc-cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 6542 33 4899999999752211 1 12467889999999999999997765
No 105
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1e-11 Score=107.77 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=92.9
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
....+...+.+.+.+.++.+|||||||+|+.+..+++... +|+.+|..+ ..+.|+++++..|+ .|+.++++|...-.
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~ 133 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGW 133 (209)
T ss_pred cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCC
Confidence 3355677888889999999999999999999999999744 999999999 99999999999999 56999999998765
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.+..+||.|+...... ..+..+ .+.|||||++++-..
T Consensus 134 ~~~aPyD~I~Vtaaa~-----~vP~~L----l~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAP-----EVPEAL----LDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccC-----CCCHHH----HHhcccCCEEEEEEc
Confidence 5558999999765432 222333 458999999986443
No 106
>PRK04266 fibrillarin; Provisional
Probab=99.32 E-value=1.6e-11 Score=109.42 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=81.4
Q ss_pred ccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCce
Q psy8709 196 NKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESV 269 (319)
Q Consensus 196 ~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~f 269 (319)
.++..++.+|||+|||+|.++..+++. +..+|+|+|+++ |++.+.++++.. .++.++.+|+.+. .++ ++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence 567788899999999999999999985 445899999999 999887776653 5789999998752 223 569
Q ss_pred eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
|+|+++... ......++.++.++|||||.++++
T Consensus 143 D~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 999975431 123345689999999999999984
No 107
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=1e-11 Score=121.37 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=95.5
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCC
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPV 266 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~ 266 (319)
.+...+...++.+|||+|||+|..+..+++. +..+|+++|+++ +++.++++++.+|+ .+++++++|+.+.. ++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~- 318 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHEKFA- 318 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccchhc-
Confidence 3344556677889999999999999998884 356999999999 99999999999998 45999999998753 33
Q ss_pred CceeEEEeccchhhhc------------chhh-------HHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 267 ESVDIIISEWMGYFLL------------FETM-------IDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~------------~~~~-------~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
++||+|+++++..... .+.. ...++..+.++|||||.++.++|+++.
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 6899999987643211 1111 246899999999999999999999853
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.32 E-value=1.9e-11 Score=110.76 Aligned_cols=124 Identities=16% Similarity=0.040 Sum_probs=91.4
Q ss_pred cccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 183 PIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
+..++.+.+.++..+.. ..+.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.++ ++++++|+
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 34556777766655432 23458999999999999998874 445999999999 9999999998765 36888998
Q ss_pred ccccc--CCCceeEEEeccchhhhc-----------c------------hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 260 EDVEL--PVESVDIIISEWMGYFLL-----------F------------ETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 260 ~~~~~--~~~~fD~Iis~~~~~~l~-----------~------------~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.+... ..++||+|++|+++.-.. + ...+..++..+.++|+|||.+++.+..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 65321 125799999999864210 0 112467888899999999999987643
No 109
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=6.5e-12 Score=129.05 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=93.4
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc-cCCCceeEEEeccc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE-LPVESVDIIISEWM 277 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~-~~~~~fD~Iis~~~ 277 (319)
++++|||+|||+|.++..++..|+.+|+++|+|+ +++.|++++..|++. ++++++++|+.+.. ...++||+|+++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 4689999999999999999998888999999999 999999999999985 58999999987642 11368999999987
Q ss_pred hhhh--------cchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 278 GYFL--------LFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 278 ~~~l--------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
.+.- ........++..+.++|+|||.++++++.-.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~ 661 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF 661 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence 5421 11234677888899999999999998876543
No 110
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.31 E-value=1.8e-11 Score=109.36 Aligned_cols=113 Identities=24% Similarity=0.241 Sum_probs=90.1
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCc
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVES 268 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~ 268 (319)
+++...+...++.+|||+|||+|.++..+++.+. +++++|+++ ++..++++....+. ++.++..++.+.+ .+.++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCC
Confidence 4444444556678999999999999999988764 899999999 99999888876665 5788888887664 23478
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
||+|++..+.++. .....+++.+.++|+|||.+++...
T Consensus 115 fD~Ii~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 115 FDVVTCMEMLEHV---PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccEEEEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999987655443 5667899999999999999998754
No 111
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.31 E-value=2.4e-11 Score=107.74 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=81.3
Q ss_pred cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC--------------CCcEEEEEcCccccc
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY--------------DSQIEVYHKLLEDVE 263 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~--------------~~~i~~i~~d~~~~~ 263 (319)
..++.+|||+|||.|..+..+++.|. +|+|+|+|+ .++.+.. ++++ ..++++.++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 34567999999999999999999988 899999999 8877642 2222 257899999998875
Q ss_pred cC-CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 264 LP-VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 264 ~~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
.. .+.||.|+...+++++ ..+....++..+.++|+|||+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 33 2589999987666655 45778899999999999998644
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=9.6e-12 Score=113.96 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=74.1
Q ss_pred CCcceeeccCCCchHHHHHHHc-C---CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-G---AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g---~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
+..+|||+|||+|.++..+++. + ...++|+|+|+ +++.|.++. .++.+..+|+.++++++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 4468999999999999988764 2 23799999999 988886542 46889999999988888899999974
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.. ...+.++.|+|||||++++...
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEEEEeC
Confidence 32 1235778999999999997544
No 113
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=1.5e-11 Score=104.70 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=86.0
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV 269 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f 269 (319)
+.+++.+...++.+|||+|||+|.++..+++. ..+|+++|+++ +++.+++++.. .++++++++|+.+++++..+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence 34555666677789999999999999999998 45999999999 99999887754 258999999999988776679
Q ss_pred eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
|.|++|.+++. ..+.+..++... .+.++|.+++..-
T Consensus 79 d~vi~n~Py~~--~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYNI--STPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCccc--HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 99999988763 234455555432 3558888886653
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.28 E-value=4.1e-11 Score=91.00 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=82.5
Q ss_pred ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEeccchhhh
Q psy8709 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEWMGYFL 281 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~~~~~l 281 (319)
+++|+|||+|.++..+++.+..+++++|.++ .+..+.+.....+ ..++.++.+|+.+... +.++||+|+++.+.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999885567999999999 7777775443333 3689999999988764 45789999998876542
Q ss_pred cchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
......+++.+.+.|+|||.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467889999999999999999986
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.28 E-value=2.2e-11 Score=107.13 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=86.8
Q ss_pred ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE 260 (319)
Q Consensus 184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~ 260 (319)
.....+...+++.+.+.++.+|||||||+|+.+..++.. + ..+|+++|..+ +++.|++++...+. .+++++.+|..
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~ 133 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGS 133 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GG
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchh
Confidence 344667778888888999999999999999999999985 3 34799999999 99999999999888 69999999987
Q ss_pred ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
....+..+||.|++..... ..+. .+.+.|++||++++-..
T Consensus 134 ~g~~~~apfD~I~v~~a~~-----~ip~----~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 134 EGWPEEAPFDRIIVTAAVP-----EIPE----ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GTTGGG-SEEEEEESSBBS-----S--H----HHHHTEEEEEEEEEEES
T ss_pred hccccCCCcCEEEEeeccc-----hHHH----HHHHhcCCCcEEEEEEc
Confidence 6544457899999876432 2223 34568999999996433
No 116
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.27 E-value=3.8e-11 Score=106.74 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=81.5
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++....+..+++.+..+|+.. ..++||+|++..+.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchh
Confidence 4567999999999999999998865 799999999 999999998887776689999999543 34789999987665
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+++ .......+++.+.+.+++++.+.+
T Consensus 138 ~~~-~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 138 IHY-PQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred hcC-CHHHHHHHHHHHHhhcCCeEEEEE
Confidence 443 235677888888887766665543
No 117
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.25 E-value=7.2e-11 Score=109.73 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=81.5
Q ss_pred CCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCC----ceeEE
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVE----SVDII 272 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~----~fD~I 272 (319)
++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.+.+++.......++.++++|+.+. +++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 45789999999999999998863 35899999999 9999998877643324678899999763 34322 23344
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
++....+++ .......+|+++++.|+|||.|++..-.
T Consensus 143 ~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 444444444 3566789999999999999999975543
No 118
>PRK06202 hypothetical protein; Provisional
Probab=99.25 E-value=4.3e-11 Score=106.98 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=76.7
Q ss_pred CCCcceeeccCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII 273 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii 273 (319)
.++.+|||+|||+|.++..+++. | ..+|+|+|+|+ |++.|+++.... ++++...+...++.+.++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence 45579999999999998888752 3 24899999999 999988765433 45666666666655667999999
Q ss_pred eccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
++.++|++.. .....+++++.++++ + .+++.
T Consensus 135 ~~~~lhh~~d-~~~~~~l~~~~r~~~-~-~~~i~ 165 (232)
T PRK06202 135 SNHFLHHLDD-AEVVRLLADSAALAR-R-LVLHN 165 (232)
T ss_pred ECCeeecCCh-HHHHHHHHHHHHhcC-e-eEEEe
Confidence 9988887644 346789999999998 4 44443
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=3.9e-11 Score=107.54 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=88.0
Q ss_pred cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc------cCCC
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE------LPVE 267 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------~~~~ 267 (319)
....++++|||+|||+|..+..++.. +.++|+++|+++ +++.|+++++.+|+.++++++.+|+.+.- .+.+
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 34445689999999999988877773 456999999999 99999999999999889999999997641 1236
Q ss_pred ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+||+|+.+.. ...+..++..+.++|+|||+++++..-+
T Consensus 144 ~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 144 EFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 8999997643 2445678888899999999999876533
No 120
>KOG2904|consensus
Probab=99.23 E-value=8.8e-11 Score=104.60 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=101.2
Q ss_pred CcccHHHHHHHHhccccc---CCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE
Q psy8709 182 TPIRTESYKSAILNNKSL---FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH 256 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~ 256 (319)
.++.++++.+++...+.. .++..+||+|||+|..+..++. .+...|+++|.|+ ++..|.+|++.+++.+++.+++
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 578889999988877643 3445799999999999999888 4677999999999 9999999999999999999986
Q ss_pred cCcccc-----ccCCCceeEEEeccchhhhc-----------------------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 257 KLLEDV-----ELPVESVDIIISEWMGYFLL-----------------------FETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 257 ~d~~~~-----~~~~~~fD~Iis~~~~~~l~-----------------------~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
-+++.- +...+++|+++||+++-.-. +-..+..++.-+.|.|+|||.+.++.
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 654432 34568999999999853210 11234566777789999999999876
Q ss_pred C
Q psy8709 309 F 309 (319)
Q Consensus 309 ~ 309 (319)
.
T Consensus 286 ~ 286 (328)
T KOG2904|consen 286 V 286 (328)
T ss_pred c
Confidence 5
No 121
>PHA03412 putative methyltransferase; Provisional
Probab=99.22 E-value=5.3e-11 Score=105.47 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=78.9
Q ss_pred CCcceeeccCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
.+.+|||+|||+|.++..+++. +..+|+++|+++ +++.|+++. .++.++.+|+....+ .++||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEEC
Confidence 3579999999999999988874 345899999999 888888664 357899999987654 3689999999
Q ss_pred cchhhhcch---------hhHHHHHHHHhcccCCCcEEEeec
Q psy8709 276 WMGYFLLFE---------TMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 276 ~~~~~l~~~---------~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
++++-.... .....++..+.+++++|+.++|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 998743211 225568888889888888877654
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=109.09 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=85.9
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
..+...+++.+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|+++++.++. ++++++.+|.....
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc
Confidence 344555666667778889999999999999999885 2 24799999999 99999999998887 68999999987655
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.+..+||+|++..... .+...+.+.|+|||.+++.
T Consensus 145 ~~~~~fD~Ii~~~g~~---------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 PEFAPYDVIFVTVGVD---------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccCCccEEEECCchH---------HhHHHHHHhcCCCCEEEEE
Confidence 4446899999764321 1223456789999998863
No 123
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.22 E-value=5.9e-11 Score=104.61 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=75.7
Q ss_pred cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cCCCc
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LPVES 268 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~~~~ 268 (319)
..++.+|||+|||+|.++..+++. + ..+|+|+|++++ +.. .+++++++|+.+.. ++.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 456789999999999999998885 2 359999999983 122 46899999998853 45678
Q ss_pred eeEEEeccchhhhcch--h------hHHHHHHHHhcccCCCcEEEeec
Q psy8709 269 VDIIISEWMGYFLLFE--T------MIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~--~------~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
||+|+|+...++.... + ....++..+.++|+|||.|++..
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999998754443211 0 13568999999999999999853
No 124
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.22 E-value=8e-11 Score=115.12 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=93.0
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE- 263 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~- 263 (319)
++.+.+.+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhh
Confidence 47777888887777788899999999999999999875 5999999999 99999999999888 57999999987532
Q ss_pred ---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 ---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+..++||+|+++++...+ ...+..+.+ ++|++++++++..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEEEeCh
Confidence 334679999999885422 234444444 6899988887643
No 125
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.21 E-value=9.7e-11 Score=109.16 Aligned_cols=99 Identities=21% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC----CCcEEEEEcCccccccCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY----DSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.++++.+..+. ..++.+..+|++++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 567999999999999999999865 999999999 99999998876421 24678888888654 3789999987
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
.+.+++.. +....+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~-~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQ-DKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCH-HHHHHHHHHHHh-hcCCEEEE
Confidence 76554433 344566776765 45666654
No 126
>KOG1501|consensus
Probab=99.21 E-value=3.8e-11 Score=112.75 Aligned_cols=149 Identities=29% Similarity=0.369 Sum_probs=123.9
Q ss_pred hhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCC
Q psy8709 123 HAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNN 202 (319)
Q Consensus 123 ~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~ 202 (319)
+-+|+.|..|+..|..+|..... +.++++|.| .
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIt--e~kh~~~~g---------------------------------------------k 67 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTIT--EPKHVLDIG---------------------------------------------K 67 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhc--ccceeccCc---------------------------------------------e
Confidence 45899999999999998876543 555666653 1
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGYF 280 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~ 280 (319)
..|||+|.|||.+++.+++.|+..|++++.-. |.+.|++...++|+.++|+++.....++... ....|+++.....--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 47999999999999999999999999999999 9999999999999999999999887776533 345788887665555
Q ss_pred hcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709 281 LLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA 318 (319)
Q Consensus 281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~ 318 (319)
+..+..++.+=.+..++++||-..+|.+.|.|+.++.+
T Consensus 148 ligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES 185 (636)
T KOG1501|consen 148 LIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVES 185 (636)
T ss_pred hhccccchhHHHHHHHhcccCCeeccccceEEEEEehh
Confidence 66667778887778889999999999999999998864
No 127
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.20 E-value=9.3e-11 Score=101.52 Aligned_cols=104 Identities=20% Similarity=0.312 Sum_probs=75.5
Q ss_pred hcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------
Q psy8709 194 LNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE-------- 263 (319)
Q Consensus 194 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-------- 263 (319)
.......++.+|||+|||+|.++..+++. +..+|+++|++++. .. .+++++.+|+.+..
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHH
Confidence 33345567889999999999999988874 34589999999921 12 46788888886642
Q ss_pred cCCCceeEEEeccchh----hhc----chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 264 LPVESVDIIISEWMGY----FLL----FETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~----~l~----~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.+.++||+|+++...+ +.. .......++..+.++|+|||++++..
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3456899999875321 111 11235788999999999999999854
No 128
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=1.1e-10 Score=106.49 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=83.7
Q ss_pred CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEecc
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEW 276 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~ 276 (319)
.++++|||+|||+|.++..+++. +..+++++|+++ +++.|++++...+..++++++.+|+.+.- ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 34578999999999999988874 567999999999 99999988766555578999999986642 2236899999874
Q ss_pred chh-hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 277 MGY-FLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 277 ~~~-~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
... .....-....+++.+.+.|+|||+++++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 211 111101236899999999999999998643
No 129
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.5e-10 Score=102.75 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=96.8
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES 268 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~ 268 (319)
.|...+.+.++.+|+|.|.|+|.++..+++. +.++|+.+|+-+ .++.|++|++..++.+++++..+|+.+...+ +.
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~ 163 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-ED 163 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-cc
Confidence 6677788999999999999999999999973 457999999999 9999999999999988899999999988776 49
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
||.|+.+. .++..++..+++.|+|||.+++-.+++
T Consensus 164 vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 164 VDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 99999665 456678899999999999998665553
No 130
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=1.2e-10 Score=107.38 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=85.9
Q ss_pred CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--CC--CCcEEEEEcCccccc-cCCCceeEEE
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--KY--DSQIEVYHKLLEDVE-LPVESVDIII 273 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g~--~~~i~~i~~d~~~~~-~~~~~fD~Ii 273 (319)
++++||++|||+|.++..+++. +..+|+++|+++ +++.|++.+... +. .++++++.+|+.... ...++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999999886 667999999999 999999887642 11 468999999987652 2357899999
Q ss_pred eccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 274 SEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 274 s~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
++....+..... .-..+++.+.+.|+|||+++....+.+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 975432211111 136788999999999999998765544
No 131
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=1.4e-10 Score=104.97 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=78.1
Q ss_pred CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
...+|||+|||+|.++..++.. +..+|+|+|+++ +++.++++. .+++++++|+.+... ..+||+|++|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCc
Confidence 3468999999999999888774 346999999999 988887653 368899999987654 3689999999998
Q ss_pred hhhcchhh-----------------HHHHHHHHhcccCCCcEEEee
Q psy8709 279 YFLLFETM-----------------IDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 279 ~~l~~~~~-----------------~~~~l~~~~r~LkpgG~li~~ 307 (319)
+++...+. +..++.....+|+|+|.+++-
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 76533211 356778888999999977643
No 132
>KOG2899|consensus
Probab=99.17 E-value=5e-11 Score=104.42 Aligned_cols=154 Identities=15% Similarity=0.244 Sum_probs=94.2
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccHHHHH-HHHhcccccCCCcceeeccCCCchHHHHHH
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRTESYK-SAILNNKSLFNNKHVIDVGAGTGILSIFAA 220 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~~~~~-~~i~~~l~~~~~~~VLDiGcGtG~ls~~la 220 (319)
...+|+++.+||+||.+|.+++..+ .+|++.+.|+|+|+..+..++.. +.........++.-+...|.-.|.++.
T Consensus 53 ~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~--- 129 (288)
T KOG2899|consen 53 EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ--- 129 (288)
T ss_pred cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc---
Confidence 5679999999999999999999988 78999999999997655443221 111111111112222233333333332
Q ss_pred HcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc---chhhHHHHHHHHhcc
Q psy8709 221 QAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL---FETMIDSVIDARNRF 297 (319)
Q Consensus 221 ~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~---~~~~~~~~l~~~~r~ 297 (319)
+.....-...|... +.. + ...|..+...|+.+ +....||+|+|-.+..|++ +.+.+.++++.+.++
T Consensus 130 ~~~a~~a~t~~~p~-------n~~-f-~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~l 198 (288)
T KOG2899|consen 130 RNEADRAFTTDFPD-------NVW-F-QKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSL 198 (288)
T ss_pred cccccccccccCCc-------chh-c-ccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHh
Confidence 11111222222222 000 0 11345555555653 3346899999977666553 466789999999999
Q ss_pred cCCCcEEEeecCc
Q psy8709 298 LKPDGVVCPNRFT 310 (319)
Q Consensus 298 LkpgG~li~~~~t 310 (319)
|.|||+|+++-..
T Consensus 199 l~pgGiLvvEPQp 211 (288)
T KOG2899|consen 199 LHPGGILVVEPQP 211 (288)
T ss_pred hCcCcEEEEcCCc
Confidence 9999999976543
No 133
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.16 E-value=2.8e-10 Score=106.75 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=82.6
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh---------cCCCCcEEEEEcCccccc----cCC
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK---------NKYDSQIEVYHKLLEDVE----LPV 266 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~---------~g~~~~i~~i~~d~~~~~----~~~ 266 (319)
++.+|||+|||.|.-.......+..+++|+|++. .++.|+++.+. ....-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6689999999999988888888889999999999 99999988832 111235678888876432 232
Q ss_pred --CceeEEEecc-chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 267 --ESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 267 --~~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
.+||+|-|.. ++|.+..++....+|+.+...|+|||+|+.+++.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 5999999977 5555667788889999999999999999976654
No 134
>PTZ00146 fibrillarin; Provisional
Probab=99.16 E-value=2.8e-10 Score=104.11 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=83.8
Q ss_pred HHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709 187 ESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE 260 (319)
Q Consensus 187 ~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~ 260 (319)
.++...++.- +.+.++.+|||+|||+|.++..+++. + ...|+++|+++ +.+...+.++.. .++.++.+|+.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 4555555333 45678889999999999999999985 3 45899999999 776666555432 57889999986
Q ss_pred cc---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 261 DV---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 261 ~~---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.. ..+.++||+|+++... ......++.++.++|||||.|++.
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ChhhhhcccCCCCEEEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence 42 2234689999987641 234456677899999999999974
No 135
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.16 E-value=1.2e-10 Score=110.72 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=97.5
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc----cCCCceeEEEec
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE----LPVESVDIIISE 275 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~----~~~~~fD~Iis~ 275 (319)
|++|||+-|-||.++..++..|+++|++||.|. .++.|++|+..||+. .++.++++|+.++- -...+||+||.+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 799999999999999999999999999999999 999999999999984 56899999997752 223599999999
Q ss_pred cchhhhc------chhhHHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709 276 WMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRFTLSLCG 315 (319)
Q Consensus 276 ~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~ 315 (319)
||.+.-. -..++..++..+.++|+|||.+++++|+..+..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 9865321 134577889999999999999999999877653
No 136
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.15 E-value=2.1e-10 Score=107.38 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=87.2
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL- 264 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~- 264 (319)
+.+.+.+...+...++.+|||+|||+|.++..+++.+ .+|+|+|.++ +++.|+++++.+++ ++++++.+|+.++..
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHh
Confidence 4455555555544456899999999999999999976 5999999999 99999999999998 689999999987542
Q ss_pred CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
..++||+|+++++...+ ...++..+ .-++|++++++++...
T Consensus 237 ~~~~~D~Vv~dPPr~G~-----~~~~~~~l-~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGI-----GKELCDYL-SQMAPRFILYSSCNAQ 277 (315)
T ss_pred cCCCCeEEEECCCCCCc-----cHHHHHHH-HHcCCCeEEEEECCcc
Confidence 23579999999874322 12222222 2367888777666543
No 137
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4e-10 Score=95.70 Aligned_cols=80 Identities=26% Similarity=0.238 Sum_probs=70.0
Q ss_pred ccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS 274 (319)
Q Consensus 196 ~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis 274 (319)
......+++|+|+|||||.+++.++-.|+..|+|+|+++ +++.+++|..+ +..++.|+.+|+.++. .++|.+++
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEE
Confidence 445667789999999999999999999999999999999 99999999988 3368999999998876 56899999
Q ss_pred ccchhh
Q psy8709 275 EWMGYF 280 (319)
Q Consensus 275 ~~~~~~ 280 (319)
|+++-.
T Consensus 115 NPPFG~ 120 (198)
T COG2263 115 NPPFGS 120 (198)
T ss_pred CCCCcc
Confidence 997643
No 138
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.14 E-value=1.4e-10 Score=106.33 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=87.7
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc---cCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE---LPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~---~~~~~fD~Iis~ 275 (319)
++++|||+-|-||.++..++..|+.+|++||.|. +++.+++|+..|++. .+++++.+|+.+.- -..++||+||++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999999999999999999999999 999999999999985 68999999997642 124689999999
Q ss_pred cchhhhc---chhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709 276 WMGYFLL---FETMIDSVIDARNRFLKPDGVVCPNRFTLSLC 314 (319)
Q Consensus 276 ~~~~~l~---~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~ 314 (319)
++.+.-. -..++..++..+.++|+|||.++..+|+..+.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence 8754211 13457788999999999999999999987654
No 139
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.12 E-value=4.7e-10 Score=104.11 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=104.1
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEc-Ccccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHK-LLEDVEL 264 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~-d~~~~~~ 264 (319)
..+.+.+.+.....+|..|||.-||||.+.+.+.-.|. +++|.|++. |+.-|+.|++..++ ....+... |+.++++
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~lpl 260 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc-CceeEEEecccccCCC
Confidence 77888899999999999999999999999999999987 999999999 99999999999887 45555555 9999999
Q ss_pred CCCceeEEEeccchhhhc------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 265 PVESVDIIISEWMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+..++|.|++++++--.. -+..+..+|+.+.++|++||++++-..
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 877899999998753221 135578899999999999999987665
No 140
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=6.1e-10 Score=117.39 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=93.4
Q ss_pred cccHHHHHHHHhccccc--CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCC---------
Q psy8709 183 PIRTESYKSAILNNKSL--FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYD--------- 249 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~--------- 249 (319)
++.++.+.+.+ ...+. .++.+|||+|||+|.+++.++.. +..+|+|+|+|+ +++.|++|++.|++.
T Consensus 99 RpeTE~lve~L-~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 99 EDWSFTFYEGL-NRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred chhHHHHHHHH-HhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 35556666663 32221 13468999999999999999885 456999999999 999999999887542
Q ss_pred ------CcEEEEEcCccccccC-CCceeEEEeccchhhhc-----------ch------------------------hhH
Q psy8709 250 ------SQIEVYHKLLEDVELP-VESVDIIISEWMGYFLL-----------FE------------------------TMI 287 (319)
Q Consensus 250 ------~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l~-----------~~------------------------~~~ 287 (319)
++++++++|+.+.... ..+||+||||+++-.-. ++ ..+
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y 257 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI 257 (1082)
T ss_pred ccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence 4799999998764322 13699999999742100 00 114
Q ss_pred HHHHHHHhcccCCCcEEEeecCc
Q psy8709 288 DSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 288 ~~~l~~~~r~LkpgG~li~~~~t 310 (319)
..++.+..++|+|||.++++...
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECc
Confidence 67788889999999999988754
No 141
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.10 E-value=5.9e-10 Score=97.75 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=90.5
Q ss_pred HHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----
Q psy8709 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----- 263 (319)
Q Consensus 192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----- 263 (319)
.+.......+.++|||||+++|+-++.+++. + .++|+.+|.++ ..+.|+++++..|+.++|+++.+|+.+.-
T Consensus 36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 3333334455689999999999999999984 2 46999999999 99999999999999899999999997641
Q ss_pred -cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 264 -LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 264 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.+.++||+|+.+.. .......+..+.++|+|||.++++..-+.
T Consensus 116 ~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp TTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred ccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 11358999997653 24566778888899999999998876554
No 142
>PLN02476 O-methyltransferase
Probab=99.09 E-value=7e-10 Score=101.23 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=91.6
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--c-
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--L- 264 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~- 264 (319)
+.+.......+.++|||+|+|+|+.++.++.. ..++|+++|.++ ..+.|+++++..|+.++++++.+|+.+.- +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 33334444555689999999999999999983 245899999999 99999999999999889999999987642 1
Q ss_pred ---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 265 ---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 265 ---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
..++||+|+.+.. ......++..+.++|+|||.++++..-
T Consensus 188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1358999997653 255678888889999999999987653
No 143
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.08 E-value=2.1e-10 Score=96.85 Aligned_cols=109 Identities=30% Similarity=0.358 Sum_probs=89.2
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l 281 (319)
..+.|+|+|+|.++..++.. +.+|++++.+| ....|.+|++-+|. .+++++.+|+.+..+ +..|+|+|+..--.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence 57889999999999998887 67999999999 88889999887887 899999999999887 578999998654444
Q ss_pred cchhhHHHHHHHHhcccCCCcEEEeecCcceeecc
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGA 316 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~ 316 (319)
.. +....+++.+...|+.+|.++|.....-..|+
T Consensus 110 i~-E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv 143 (252)
T COG4076 110 IE-EKQVPVINAVLEFLRYDPTIIPQEVRIGANPV 143 (252)
T ss_pred hc-ccccHHHHHHHHHhhcCCccccHHHhhccCcc
Confidence 44 34456778888899999999987665555443
No 144
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.07 E-value=2e-09 Score=92.60 Aligned_cols=124 Identities=20% Similarity=0.183 Sum_probs=91.6
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCC--------EEEEEecHH-HHHHHHHHHHhcCCCCcEE
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAA--------KVFAIEKSD-IAYETIDIIRKNKYDSQIE 253 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~--------~V~gvD~s~-~i~~a~~~~~~~g~~~~i~ 253 (319)
-.+.+...+++.....++..|||.-||+|.+.+..+.. ... +++|.|+++ ++..+++|++..++...+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 34677788888888888899999999999999888774 222 389999999 9999999999999988999
Q ss_pred EEEcCccccccCCCceeEEEeccchhhhcc-----hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 254 VYHKLLEDVELPVESVDIIISEWMGYFLLF-----ETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 254 ~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~-----~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+.+.|+.+++++.+++|.|++|+++..-.. +.....+++++.++|++...+++..
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 999999999977789999999998653222 2335677899999999955555443
No 145
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.07 E-value=4e-10 Score=98.02 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-c-ccCCCceeEEEeccc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-V-ELPVESVDIIISEWM 277 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-~-~~~~~~fD~Iis~~~ 277 (319)
++.+|||+|||+|.++..+++.....++|+|+++ +++.+.+ .+++++.+|+.+ + +++.++||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 4579999999999999988876555889999999 8777653 246788888865 3 355678999999887
Q ss_pred hhhhcchhhHHHHHHHHhcccCCC
Q psy8709 278 GYFLLFETMIDSVIDARNRFLKPD 301 (319)
Q Consensus 278 ~~~l~~~~~~~~~l~~~~r~Lkpg 301 (319)
.+++ .++..+++++.+.++++
T Consensus 85 l~~~---~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 85 LQAT---RNPEEILDEMLRVGRHA 105 (194)
T ss_pred hHcC---cCHHHHHHHHHHhCCeE
Confidence 7665 55778888888877654
No 146
>KOG1975|consensus
Probab=99.07 E-value=4.9e-10 Score=101.95 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=93.3
Q ss_pred HHHHHHHhccc---ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC-----CCCcEEEEEc
Q psy8709 187 ESYKSAILNNK---SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK-----YDSQIEVYHK 257 (319)
Q Consensus 187 ~~~~~~i~~~l---~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g-----~~~~i~~i~~ 257 (319)
.+++.||...+ -..++..++|+|||.|.-.+..-++|...++|+|+.+ .++.|+++.+.-. +.-.+.|+.+
T Consensus 100 RnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~ 179 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA 179 (389)
T ss_pred hhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence 34444444332 3456678999999999999999999999999999999 9999987765321 1125789999
Q ss_pred Ccccc------ccCCCceeEEEeccchh-hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 258 LLEDV------ELPVESVDIIISEWMGY-FLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 258 d~~~~------~~~~~~fD~Iis~~~~~-~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
|.... ++++.+||+|-|...+| .+..++....+|+++.+.|+|||+||-+.+.
T Consensus 180 Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 180 DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred ccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 87543 33445599999987554 4556777889999999999999999966554
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.06 E-value=8.3e-10 Score=107.62 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=89.8
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE- 263 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~- 263 (319)
.+.+.+.+...+...++.+|||+|||+|.++..+++.. .+|+|+|+++ +++.|+++++.+++ .+++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHH
Confidence 35666677777777777899999999999999999874 5999999999 99999999999988 68999999997631
Q ss_pred ---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 264 ---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 264 ---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
....+||+|+.+++... ....+++.+.+ ++|++.+++++
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEcC
Confidence 22357999999887432 12445555443 78998887764
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.05 E-value=1.6e-09 Score=92.64 Aligned_cols=110 Identities=30% Similarity=0.390 Sum_probs=76.2
Q ss_pred cccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcC--CCCcEEEEEcCccccc----cCCCce
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNK--YDSQIEVYHKLLEDVE----LPVESV 269 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g--~~~~i~~i~~d~~~~~----~~~~~f 269 (319)
....++.+|||+|||+|..++.++.. +..+|+..|.++.++..+.+++.|+ ...++.+...+..+.. .+..+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 34567789999999999999999997 7779999999998888899999887 5577888887764421 234689
Q ss_pred eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
|+|+..-+.|. +...+.++..+.++|+|+|.+++...
T Consensus 121 D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 121 DVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99997666553 47788899999999999999776554
No 149
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=9.9e-10 Score=105.11 Aligned_cols=115 Identities=7% Similarity=-0.016 Sum_probs=86.8
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL- 264 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~- 264 (319)
+.+.+.+...+...++.+|||+|||+|.++..++..+ .+|+|+|+++ +++.|+++++.++. ++++++.+|+.+...
T Consensus 219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATA 296 (374)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHh
Confidence 4444444444443456799999999999999999876 5999999999 99999999999988 589999999976532
Q ss_pred CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
...+||+|+.+++... ....++..+. .++|++++++++.
T Consensus 297 ~~~~~D~vi~DPPr~G-----~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 297 QMSAPELVLVNPPRRG-----IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred cCCCCCEEEECCCCCC-----CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1246999999998532 2234444444 3789998888764
No 150
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=6.2e-10 Score=95.34 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=74.0
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEecc
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEW 276 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~ 276 (319)
.++.+|||+|||.|.+...+.+......+|+|+++ .+..+. ++| +.++++|+++- .+++++||.||.+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG----v~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG----VSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC----CCEEECCHHHhHhhCCCCCccEEehHh
Confidence 45689999999999999999885556999999999 555544 344 46899999764 47889999999766
Q ss_pred chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
....+ ..+..+|+++.|+ |...+++.++.
T Consensus 84 tLQ~~---~~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 84 TLQAV---RRPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHhH---hHHHHHHHHHHHh---cCeEEEEecCh
Confidence 65444 6678888888665 55566555443
No 151
>KOG1541|consensus
Probab=99.05 E-value=7.7e-10 Score=95.80 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=87.1
Q ss_pred HHHHHHHhcccccC--CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-ccc
Q psy8709 187 ESYKSAILNNKSLF--NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDV 262 (319)
Q Consensus 187 ~~~~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~ 262 (319)
.++.+..+..+.+. +..-|||||||+|..+..+...|. ..+|+|+|+ |++.|.+.--+ -.++.+|+ +-+
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Gl 106 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGL 106 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCC
Confidence 34444444444444 367899999999999999988885 999999999 99999863221 23566666 456
Q ss_pred ccCCCceeEEEeccchhhhcc--------hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 263 ELPVESVDIIISEWMGYFLLF--------ETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 263 ~~~~~~fD~Iis~~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+++.+.||.+|+-....|+.+ ...+..++..++.+|++|+..++..
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 788899999999777777643 2346778999999999999988764
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.04 E-value=1.8e-09 Score=96.98 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=86.5
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-- 265 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-- 265 (319)
..|+..+.+.+|.+|||.|.|+|.++..+++. +.++|+..|..+ .++.|+++++.+|+.+++++.+.|+.+..++
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 46777889999999999999999999999984 567999999999 9999999999999988999999999754442
Q ss_pred -CCceeEEEeccchhhhcchhhHHHHHHHHhccc-CCCcEEEeecCc
Q psy8709 266 -VESVDIIISEWMGYFLLFETMIDSVIDARNRFL-KPDGVVCPNRFT 310 (319)
Q Consensus 266 -~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~L-kpgG~li~~~~t 310 (319)
...+|.|+.+.+-.| .++..+.+.| +|||+++.=.++
T Consensus 110 ~~~~~DavfLDlp~Pw--------~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 110 LESDFDAVFLDLPDPW--------EAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp -TTSEEEEEEESSSGG--------GGHHHHHHHE-EEEEEEEEEESS
T ss_pred ccCcccEEEEeCCCHH--------HHHHHHHHHHhcCCceEEEECCC
Confidence 267999998765433 4566677889 899998854443
No 153
>KOG3010|consensus
Probab=99.04 E-value=2.2e-10 Score=100.55 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=72.5
Q ss_pred ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc
Q psy8709 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL 282 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~ 282 (319)
.++|+|||+|..++.++.. ..+|+|+|+|+ |++.|.+.-.........++...+..++.-+++++|+|++....||+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 8999999999778888887 56999999999 99977754332222223334444444444447899999999988987
Q ss_pred chhhHHHHHHHHhcccCCCc-EEE
Q psy8709 283 FETMIDSVIDARNRFLKPDG-VVC 305 (319)
Q Consensus 283 ~~~~~~~~l~~~~r~LkpgG-~li 305 (319)
++++++++++|+||++| .+.
T Consensus 114 ---dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 114 ---DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred ---chHHHHHHHHHHcCCCCCEEE
Confidence 66889999999999877 444
No 154
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=1.6e-09 Score=96.17 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=84.0
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh-----------cCCCCcEEEEEcCccccccC--
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK-----------NKYDSQIEVYHKLLEDVELP-- 265 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~-----------~g~~~~i~~i~~d~~~~~~~-- 265 (319)
.++.+||+.|||.|.....+++.|. +|+|+|+|+ .++.+.+.... .....+++++++|+.+++.+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3567999999999999999999998 799999999 77776542100 00124799999999987532
Q ss_pred -CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 266 -VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 266 -~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.++||+|+-...+..+ +.++..+..+.+.++|+|||.++.-+
T Consensus 121 ~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2589999977666655 55788999999999999999987443
No 155
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.02 E-value=2.2e-09 Score=93.64 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=85.6
Q ss_pred ceEEeeecCCCcccHH--HHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcC
Q psy8709 172 AKVFAIEKSGTPIRTE--SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNK 247 (319)
Q Consensus 172 ~~V~avd~d~~~~~~~--~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g 247 (319)
.-.+-+|.....+... .-+..+.+. ..++.+|+|+.||.|.++..+++ ...+.|+++|++| .++.++++++.|+
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk 149 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK 149 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred CEEEEEccceEEEccccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC
Confidence 3456677776666653 334445444 56688999999999999999998 3456899999999 9999999999999
Q ss_pred CCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 248 YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 248 ~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
+.+++..+++|..++.. ...||.|+++.+... ..+|..+.+++++||++-
T Consensus 150 v~~~i~~~~~D~~~~~~-~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 150 VENRIEVINGDAREFLP-EGKFDRVIMNLPESS-------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TTTEEEEES-GGG----TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CCCeEEEEcCCHHHhcC-ccccCEEEECChHHH-------HHHHHHHHHHhcCCcEEE
Confidence 99899999999988765 589999998776432 245666778899999874
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=1.8e-09 Score=95.05 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=92.9
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE-cCccccc--c
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH-KLLEDVE--L 264 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~-~d~~~~~--~ 264 (319)
+.+...+...+.++|||+|.+.|+-++.++.. + ..+++++|.++ +++.|++++++.|+.++++++. +|..+.- .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 33444444456789999999999999999984 4 57999999999 9999999999999988899999 5775542 2
Q ss_pred CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
..++||+|+... .....+.++..+.++|+|||+++.+..-..
T Consensus 129 ~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 129 LDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred cCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 358999999653 235567889999999999999998765443
No 157
>PLN02366 spermidine synthase
Probab=99.01 E-value=2.1e-09 Score=99.93 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhc--CC-CCcEEEEEcCccccc--cCCCceeEE
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKN--KY-DSQIEVYHKLLEDVE--LPVESVDII 272 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~--g~-~~~i~~i~~d~~~~~--~~~~~fD~I 272 (319)
.+.++||++|||+|.++..+++.+ ..+|+.+|+++ +++.+++.+... ++ .++++++.+|+...- .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456899999999999999999874 57999999999 999999877542 22 368999999986542 234689999
Q ss_pred Eeccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 273 ISEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 273 is~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
+++......... -.-..+++.+.+.|+|||+++....+.+.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 997643221110 01357889999999999999987666554
No 158
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.01 E-value=8.9e-11 Score=102.11 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=81.9
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCC
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPV 266 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~ 266 (319)
.+.++......+-.++||+|||||..+..+... ..+++|+|+|. |+++|.++ +..+ ++.+++...+. ...
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccC
Confidence 333444444444579999999999999988887 45999999999 99888753 2212 23334443221 345
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
++||+|++.-+..++ ..++.++..+...|+|||.|.||.-+.
T Consensus 187 er~DLi~AaDVl~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 187 ERFDLIVAADVLPYL---GALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred CcccchhhhhHHHhh---cchhhHHHHHHHhcCCCceEEEEeccc
Confidence 789999976665555 788999999999999999999987664
No 159
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.00 E-value=2.1e-09 Score=93.73 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=81.3
Q ss_pred cceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---ccCCCceeEEEeccc
Q psy8709 203 KHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---ELPVESVDIIISEWM 277 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---~~~~~~fD~Iis~~~ 277 (319)
..+||||||.|.+...+|. .+...++|+|+.. .+..+.+.+...++ .|+.++++|+..+ -++.+++|.|+.+.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999888 4777999999999 99999988888888 8999999999874 245589999998877
Q ss_pred hhhhcchh-----hHHHHHHHHhcccCCCcEEEeec
Q psy8709 278 GYFLLFET-----MIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 278 ~~~l~~~~-----~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
-.|.-... .-..++..+.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 66653222 24678999999999999998765
No 160
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.97 E-value=2.8e-09 Score=97.61 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcC--C-CCcEEEEEcCcccc-ccCCCceeEEE
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNK--Y-DSQIEVYHKLLEDV-ELPVESVDIII 273 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g--~-~~~i~~i~~d~~~~-~~~~~~fD~Ii 273 (319)
.++++||++|||+|.++..+++.+ ..+++++|+++ +++.+++.+...+ + .++++++.+|..+. ....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 344699999999999999888864 67999999999 9999998765432 1 25788888887653 22246899999
Q ss_pred eccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 274 SEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 274 s~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
++.....-.... ....+++.+.+.|+|||++++...+.+.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~ 191 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWI 191 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCccc
Confidence 876532211111 1367889999999999999988665443
No 161
>PRK03612 spermidine synthase; Provisional
Probab=98.97 E-value=1.5e-09 Score=108.14 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=84.6
Q ss_pred CCCcceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHH--HHh---cCC-CCcEEEEEcCccccc-cCCCcee
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDI--IRK---NKY-DSQIEVYHKLLEDVE-LPVESVD 270 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~--~~~---~g~-~~~i~~i~~d~~~~~-~~~~~fD 270 (319)
.++++|||+|||+|..+..+++.+. .+|+++|+++ +++.++++ +.. ..+ .++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998754 7999999999 99999883 221 122 258999999988742 2346899
Q ss_pred EEEeccchhhhcch--hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 271 IIISEWMGYFLLFE--TMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 271 ~Iis~~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
+|+++.+....... -.-.++++.+.+.|+|||.++++..+.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~ 420 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF 420 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc
Confidence 99998654321110 11246888999999999999998765543
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.96 E-value=2.3e-09 Score=99.12 Aligned_cols=92 Identities=22% Similarity=0.249 Sum_probs=78.7
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~ 264 (319)
...+.+.+...+...++.+|||||||+|.++..+++.+ .+|+++|+++ +++.+++++...+..++++++.+|+.+..+
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 35677777777788888999999999999999999875 4899999999 999999998877755789999999987665
Q ss_pred CCCceeEEEeccchhh
Q psy8709 265 PVESVDIIISEWMGYF 280 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~ 280 (319)
+ .||.|++|.+++.
T Consensus 100 ~--~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 P--YFDVCVANVPYQI 113 (294)
T ss_pred c--ccCEEEecCCccc
Confidence 3 6899999988764
No 163
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.95 E-value=3e-09 Score=96.72 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=75.3
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~ 264 (319)
...+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++.. .++++++++|+.++++
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL 89 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc
Confidence 35667777777777888999999999999999999985 4999999999 99999887754 2589999999988776
Q ss_pred CCCceeEEEeccchhh
Q psy8709 265 PVESVDIIISEWMGYF 280 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~ 280 (319)
+ .||.|++|.+++.
T Consensus 90 ~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 P--EFNKVVSNLPYQI 103 (258)
T ss_pred h--hceEEEEcCCccc
Confidence 5 5899999998664
No 164
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.93 E-value=4.5e-09 Score=93.13 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=81.2
Q ss_pred cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh--c-----C----CCCcEEEEEcCcccccc
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK--N-----K----YDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~--~-----g----~~~~i~~i~~d~~~~~~ 264 (319)
+...++.+||..|||.|.-...+++.|. +|+|+|+|+ .++.+.+.... . + ...+|++.++|+.+++.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3455667999999999999999999988 999999999 77776432211 0 0 12478999999988764
Q ss_pred CC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 265 PV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 265 ~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
.. ++||+|+-...+..+ +.++.....+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 479999977666554 55788999999999999999944
No 165
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.93 E-value=2.8e-09 Score=89.97 Aligned_cols=79 Identities=14% Similarity=-0.014 Sum_probs=65.0
Q ss_pred EEEecHH-HHHHHHHHHHhc--CCCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEE
Q psy8709 228 FAIEKSD-IAYETIDIIRKN--KYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304 (319)
Q Consensus 228 ~gvD~s~-~i~~a~~~~~~~--g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 304 (319)
+|+|+|+ |++.|+++.+.. +...+++++++|++++++++++||+|++....+++ .+...++++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEE
Confidence 4899999 999998766532 22357999999999999888899999987666555 57789999999999999999
Q ss_pred EeecC
Q psy8709 305 CPNRF 309 (319)
Q Consensus 305 i~~~~ 309 (319)
++...
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 86544
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=2.9e-09 Score=97.63 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=72.6
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
..+.+.+++.+...++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.+++++.. ++++++++|+.+++++
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH
Confidence 45666777777777888999999999999999999865 999999999 99998876632 5899999999988765
Q ss_pred CCceeEEEeccchh
Q psy8709 266 VESVDIIISEWMGY 279 (319)
Q Consensus 266 ~~~fD~Iis~~~~~ 279 (319)
.-.++.|++|.+++
T Consensus 103 ~~~~~~vv~NlPY~ 116 (272)
T PRK00274 103 ELQPLKVVANLPYN 116 (272)
T ss_pred HcCcceEEEeCCcc
Confidence 32269999998864
No 167
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.92 E-value=2.5e-09 Score=93.33 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=77.1
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF 280 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~ 280 (319)
..+.||.|||.|+.+..+.-.-+.+|..+|+.+ .++.|++.+.... ....++.+..++++..+..+||+|++.|...+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 368999999999999877665578999999999 9999987765522 24567888888888766679999999998877
Q ss_pred hcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 281 LLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 281 l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
|.. .++-.+|+.+...|+|||++++
T Consensus 135 LTD-~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 135 LTD-EDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp S-H-HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCH-HHHHHHHHHHHHhCcCCcEEEE
Confidence 654 7788999999999999999985
No 168
>PRK01581 speE spermidine synthase; Validated
Probab=98.92 E-value=4.7e-09 Score=98.64 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=83.0
Q ss_pred cCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHH--H---HhcCC-CCcEEEEEcCcccc-ccCCCce
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDI--I---RKNKY-DSQIEVYHKLLEDV-ELPVESV 269 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~--~---~~~g~-~~~i~~i~~d~~~~-~~~~~~f 269 (319)
....++||++|||+|..+..+.+.+ ..+|+++|+++ +++.|++. + ....+ .++++++.+|+.++ ....++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3445799999999999999888864 57999999999 99999862 1 11122 47999999999875 2334689
Q ss_pred eEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 270 DIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 270 D~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
|+|+++.+..... ..-.-..+++.+++.|+|||+++....+.+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 9999986421110 111125688999999999999987765443
No 169
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=9.3e-09 Score=92.62 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=87.8
Q ss_pred cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--c-C----C
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--L-P----V 266 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~-~----~ 266 (319)
+...+.++|||+|+++|+-+..+++. ..++++++|.++ ..+.|+++++..|+.++|+++.|++.+.- + + .
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 34444589999999999999999884 346999999999 99999999999999999999999987652 1 1 2
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
++||+|+.+.- .......+..+.++|+|||+++++..-+
T Consensus 155 ~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 155 GTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred CcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 68999997643 2445677788889999999999876543
No 170
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.89 E-value=1.4e-09 Score=95.05 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=89.0
Q ss_pred cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC-CCcEEEEEcCcccc--ccCCCceeEE
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY-DSQIEVYHKLLEDV--ELPVESVDII 272 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~-~~~i~~i~~d~~~~--~~~~~~fD~I 272 (319)
.....+.+|||.+.|-|+.++.++++|+.+|+.++.++ .++.|.-|--..++ ...++++.||+.+. .+++++||+|
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 44567899999999999999999999999999999999 77766543222222 24689999999876 4778899999
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
|-+++-+.+..+-.-..+.++++|+|||||.++
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 999987666565556788999999999999998
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.87 E-value=1.1e-08 Score=97.93 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=86.9
Q ss_pred HHHHHHHhcccccC-CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKSLF-NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
..+...+.+.+... ++.+|||++||+|.+++.++. .+..+|+++|+++ .++.+++|++.|++ ++++++++|+..+.
T Consensus 42 rdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l 120 (382)
T PRK04338 42 RDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALL 120 (382)
T ss_pred hhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHH
Confidence 44444444433322 246899999999999999877 4666999999999 99999999999998 56789999987643
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
...++||+|+.++++ ....++..+.+.+++||+++++...
T Consensus 121 ~~~~~fD~V~lDP~G-------s~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 121 HEERKFDVVDIDPFG-------SPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred hhcCCCCEEEECCCC-------CcHHHHHHHHHHhcCCCEEEEEecC
Confidence 213679999998752 2245666666778999999988443
No 172
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.85 E-value=2e-08 Score=98.34 Aligned_cols=114 Identities=18% Similarity=0.064 Sum_probs=90.6
Q ss_pred ccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709 198 SLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIII 273 (319)
Q Consensus 198 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Ii 273 (319)
...++.+|||++||.|.-+..++.. +.+.++++|+++ .++..+++++..|+ .++.+.+.|...+. ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 5567889999999999999998884 345899999999 99999999999998 67889999987653 2236799999
Q ss_pred eccchhh----hcch---------------hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 274 SEWMGYF----LLFE---------------TMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 274 s~~~~~~----l~~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.+.+... -.+. .....+|..+.++|||||+|+.++||+.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 7654331 1111 1136789999999999999999999975
No 173
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.84 E-value=2e-08 Score=90.22 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=84.6
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV 269 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f 269 (319)
..+.......+..+|+|||+|+|.++..+++ .+..+++..|....++.+.+ .++++++.+|+. -++|. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~--~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV--A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS--E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc--c
Confidence 3445555666667999999999999999888 46679999999777777766 479999999998 56664 9
Q ss_pred eEEEeccchhhhcchhhHHHHHHHHhcccCCC--cEEEeecC
Q psy8709 270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPD--GVVCPNRF 309 (319)
Q Consensus 270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg--G~li~~~~ 309 (319)
|+++...+.|.+. ++....+|+++++.|+|| |++++...
T Consensus 160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9999888877654 467789999999999999 99986554
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=2.9e-08 Score=92.56 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=62.6
Q ss_pred CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEE-cCccccc----cCCCceeEE
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYH-KLLEDVE----LPVESVDII 272 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~-~d~~~~~----~~~~~fD~I 272 (319)
++.++||||||+|.+...++. ....+++|+|+++ +++.|++++..| ++.++++++. .+..++. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666554 4445999999999 999999999999 7888898864 3333221 235689999
Q ss_pred Eeccchhh
Q psy8709 273 ISEWMGYF 280 (319)
Q Consensus 273 is~~~~~~ 280 (319)
+||+++|-
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99999774
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.82 E-value=2e-08 Score=89.26 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=87.2
Q ss_pred cceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEeccc
Q psy8709 203 KHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISEWM 277 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~~~ 277 (319)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++ +|+.++++|+..+. .+.++.|-|..+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 4799999999999999998 4677999999999 99999999999998 49999999998762 34459999998877
Q ss_pred hhhhcchh-----hHHHHHHHHhcccCCCcEEEeec
Q psy8709 278 GYFLLFET-----MIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 278 ~~~l~~~~-----~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
-.|.-... ....++..+.+.|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 66542211 24678999999999999998765
No 176
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.81 E-value=6.4e-08 Score=91.20 Aligned_cols=130 Identities=18% Similarity=0.054 Sum_probs=105.0
Q ss_pred CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC---------------------------------C---
Q psy8709 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---------------------------------A--- 225 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------~--- 225 (319)
..+-.+.+...++......++..++|.-||+|.+.+.++-.+. .
T Consensus 172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 4455688999999999999889999999999999998887542 1
Q ss_pred ----EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhcchh-----hHHHHHHHHh
Q psy8709 226 ----KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFET-----MIDSVIDARN 295 (319)
Q Consensus 226 ----~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~-----~~~~~l~~~~ 295 (319)
.++|+|+++ +++.|+.|++..|+.+.|+|.++|+..+..+.+.+|+||||+++-.-.... ....+.+.++
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLK 331 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHH
Confidence 378999999 999999999999999999999999998876557899999999865322222 3445666777
Q ss_pred cccCCCcEEEeecCcc
Q psy8709 296 RFLKPDGVVCPNRFTL 311 (319)
Q Consensus 296 r~LkpgG~li~~~~t~ 311 (319)
+.++--+.+++++...
T Consensus 332 ~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 332 RLLAGWSRYVFTTSED 347 (381)
T ss_pred HHhcCCceEEEEccHH
Confidence 8888878888776543
No 177
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=2.2e-08 Score=93.52 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=99.5
Q ss_pred eEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCc
Q psy8709 173 KVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQ 251 (319)
Q Consensus 173 ~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~ 251 (319)
-.+.+|+....+......+...-.-....|.+|+|.-||-|.+++.+++.|...|+++|++| .++.+.+|++.|++.+.
T Consensus 160 ~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~ 239 (341)
T COG2520 160 CRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGR 239 (341)
T ss_pred EEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccce
Confidence 45566666665555333333322222334899999999999999999999887799999999 99999999999999888
Q ss_pred EEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 252 IEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 252 i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+..+.||..++....+.+|-|+++.+. .-..++..+.+.+++||++.+...
T Consensus 240 v~~i~gD~rev~~~~~~aDrIim~~p~-------~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 240 VEPILGDAREVAPELGVADRIIMGLPK-------SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eeEEeccHHHhhhccccCCEEEeCCCC-------cchhhHHHHHHHhhcCcEEEEEec
Confidence 999999999887555789999976553 234566667778888998875543
No 178
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.80 E-value=2.3e-08 Score=95.31 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=84.7
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE- 263 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~- 263 (319)
.+.+.+.+.+.+... +.+|||++||+|.++..+++. +.+|+|+|.++ +++.+++++..+++ ++++++.+|+.+..
T Consensus 192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHH
Confidence 466666666655432 257999999999999988876 46999999999 99999999999998 58999999997641
Q ss_pred -cC--------------CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 -LP--------------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 -~~--------------~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+. ..+||+|+.+++.. .....++..+.+ |++++++++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEEEEeCH
Confidence 10 12589999999842 223445555443 67777776543
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.79 E-value=5.3e-08 Score=88.26 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=73.1
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~ 264 (319)
...+.+.+++.+...++.+|||+|||+|.++..+++.+. .|+++|+++ +++.++++... ..+++++++|+.+.++
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL 89 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh
Confidence 356677788777777889999999999999999999864 799999999 99888876643 3689999999988776
Q ss_pred CCCcee---EEEeccchh
Q psy8709 265 PVESVD---IIISEWMGY 279 (319)
Q Consensus 265 ~~~~fD---~Iis~~~~~ 279 (319)
+ .+| .|++|.+++
T Consensus 90 ~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPYN 105 (253)
T ss_pred h--HcCCcceEEEcCChh
Confidence 4 566 999998865
No 180
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.78 E-value=3.3e-08 Score=93.91 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=83.9
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
+.+.+.+.+.+...+ .+|||+|||+|.++..+++.. .+|+|+|.++ +++.|+++++.+++ ++++++.+|+.+....
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHH
Confidence 566666666554333 469999999999999888864 5999999999 99999999999998 5799999999764211
Q ss_pred ----------C------CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 266 ----------V------ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 266 ----------~------~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
. ..||+|+.+++-. .....++..+.+ |++++|+++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEEcCH
Confidence 0 1389999999842 223445555443 78888877643
No 181
>KOG2361|consensus
Probab=98.70 E-value=2e-08 Score=88.35 Aligned_cols=103 Identities=22% Similarity=0.214 Sum_probs=74.9
Q ss_pred ceeeccCCCchHHHHHHHc-CC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCceeEEEec
Q psy8709 204 HVIDVGAGTGILSIFAAQA-GA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESVDIIISE 275 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~-g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~fD~Iis~ 275 (319)
+||++|||.|.....+.+. +. -.|+++|.|+ +++..+++..-.. .++.....|+... +.+.+++|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999998884 22 4899999999 6665554433222 3455555555432 3446899999976
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.++..+.. +....++.+++++|||||.+++...
T Consensus 152 FvLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 152 FVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 66555444 5568899999999999999997643
No 182
>KOG3191|consensus
Probab=98.69 E-value=1e-07 Score=80.45 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=84.5
Q ss_pred CcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 202 NKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
...++|||||+|..+.++++. +...+.++|+++ +++...+.++.|+. ++..+..|+...-.+ +++|+++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECCCc
Confidence 478999999999999999984 566899999999 88888888888876 688888888765444 899999999875
Q ss_pred hhhc------------------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 279 YFLL------------------FETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 279 ~~l~------------------~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
---. +.+..++++.++..+|.|.|.++.-.+.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 2111 1223678889999999999999976544
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.69 E-value=1.2e-07 Score=78.91 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=89.9
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL 259 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~ 259 (319)
-+++....+.+.+.+....+..|||+|.|||.++..+.++| ...++++|.|+ ......+.. +.+.+++||+
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda 103 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDA 103 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccch
Confidence 34456667777888888888999999999999999999975 45899999999 665554432 4667999999
Q ss_pred cccc-----cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 260 EDVE-----LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 260 ~~~~-----~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
.++. .....||.|||..+.-.+. .....++++.+...|.+||.++
T Consensus 104 ~~l~~~l~e~~gq~~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 104 FDLRTTLGEHKGQFFDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred hhHHHHHhhcCCCeeeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEE
Confidence 8774 4457899999976543332 2345678888899999999988
No 184
>KOG0820|consensus
Probab=98.68 E-value=7.5e-08 Score=86.04 Aligned_cols=90 Identities=24% Similarity=0.300 Sum_probs=78.3
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
..+.+.|....+..++..|||+|.|||.++..+.+.|. +|+++|+++ |+....++.+......+.+++.||+...++|
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 45667777788888999999999999999999999966 999999999 9999998887766668999999999887765
Q ss_pred CCceeEEEeccchh
Q psy8709 266 VESVDIIISEWMGY 279 (319)
Q Consensus 266 ~~~fD~Iis~~~~~ 279 (319)
.||.+|+|.++.
T Consensus 123 --~fd~cVsNlPyq 134 (315)
T KOG0820|consen 123 --RFDGCVSNLPYQ 134 (315)
T ss_pred --ccceeeccCCcc
Confidence 799999987653
No 185
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6.8e-08 Score=93.68 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=95.8
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
+...+.+..++.+.++..++.++||+-||.|.++..+++. ..+|+|+|+++ +++.|+++++.|+. +|++|+.+++++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHH
Confidence 3345888889999999888899999999999999999976 45999999999 99999999999999 559999999998
Q ss_pred cccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 262 VELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 262 ~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+... ...+|.|+.+++--.+ -+.+++.+. .++|..++++|+..
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCC-----CHHHHHHHH-hcCCCcEEEEeCCH
Confidence 7533 2478999999875433 124444444 45677777776543
No 186
>KOG3420|consensus
Probab=98.67 E-value=5.1e-08 Score=79.27 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=75.3
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE 267 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~ 267 (319)
+...+-+-.....|++++|+|||.|-++..++..+...|+|+|+.+ .++.+.+|+....+ ++.++++|+.+..+..+
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCC
Confidence 3444445566678899999999999999888887888999999999 99999999888766 67899999999887778
Q ss_pred ceeEEEeccchh
Q psy8709 268 SVDIIISEWMGY 279 (319)
Q Consensus 268 ~fD~Iis~~~~~ 279 (319)
.||..+.|+++.
T Consensus 114 ~fDtaviNppFG 125 (185)
T KOG3420|consen 114 IFDTAVINPPFG 125 (185)
T ss_pred eEeeEEecCCCC
Confidence 999999998753
No 187
>KOG2940|consensus
Probab=98.64 E-value=3.3e-08 Score=86.22 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=84.3
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l 281 (319)
..++|+|||-|.+...+...+..+++-+|.|. |++.++.. +.+++ ......+|-+.+++.+.++|+|++....||.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 57999999999999999998889999999999 99887643 22332 5667888998889989999999999988887
Q ss_pred cchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
.+++..+.+++..|||+|.|+-
T Consensus 151 ---NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 151 ---NDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred ---ccCchHHHHHHHhcCCCccchh
Confidence 6678889999999999999883
No 188
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.62 E-value=6.4e-08 Score=83.88 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=63.8
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV 266 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~ 266 (319)
+.+.+++.. ..++..|.|+|||.+.++..+. .+. .|...|+-+ .+-.++.+|+.++|+++
T Consensus 61 d~iI~~l~~---~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva---------------~n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 61 DVIIEWLKK---RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA---------------PNPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHCT---S-TTS-EEEES-TT-HHHHH---S----EEEEESS----------------SSTTEEES-TTS-S--T
T ss_pred HHHHHHHHh---cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC---------------CCCCEEEecCccCcCCC
Confidence 444445442 3345699999999999985543 222 799999987 22246789999999999
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
+++|++|+..... + .++..++.+++|+|||||.|.+...+-.+
T Consensus 121 ~svDv~VfcLSLM---G-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf 163 (219)
T PF05148_consen 121 ESVDVAVFCLSLM---G-TNWPDFIREANRVLKPGGILKIAEVKSRF 163 (219)
T ss_dssp T-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-
T ss_pred CceeEEEEEhhhh---C-CCcHHHHHHHHheeccCcEEEEEEecccC
Confidence 9999999765422 2 57789999999999999999987655443
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.62 E-value=4.7e-07 Score=78.05 Aligned_cols=97 Identities=23% Similarity=0.308 Sum_probs=79.0
Q ss_pred ceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709 204 HVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l 281 (319)
+++|+|+|.|.-++.++- .+..+++.+|... -+...+......++ +|++++++++++ .....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 799999999999988887 4667999999999 88888888888888 689999999998 444589999998766
Q ss_pred cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..+..++.-+..+|++||.+++-..
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4567888889999999999886443
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.61 E-value=1.1e-07 Score=84.75 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=60.3
Q ss_pred HHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCcc-----ccc
Q psy8709 192 AILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLE-----DVE 263 (319)
Q Consensus 192 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~-----~~~ 263 (319)
.++.... ..++.+|||+|||||.++..+++.|+.+|+|+|+++ ++... ++.+ .++. +...++. ++.
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCCHhHcC
Confidence 3333333 356789999999999999999999888999999999 76551 2221 1221 2222333 222
Q ss_pred cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
.....+|+++... ..++..+.+.|+| |.++
T Consensus 139 ~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 139 PDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred CCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 1223677666422 2246677778888 7665
No 191
>PLN02823 spermine synthase
Probab=98.60 E-value=2.1e-07 Score=87.55 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=81.2
Q ss_pred CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC---CCCcEEEEEcCccccc-cCCCceeEEEe
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK---YDSQIEVYHKLLEDVE-LPVESVDIIIS 274 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g---~~~~i~~i~~d~~~~~-~~~~~fD~Iis 274 (319)
..++||.+|+|.|..+..+.+. +..+|+.+|+++ +++.+++.+..++ ..++++++.+|....- ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999998885 567999999999 9999998875432 1478999999987752 33468999998
Q ss_pred ccchhhhcch--h-hHHHHHH-HHhcccCCCcEEEeecCc
Q psy8709 275 EWMGYFLLFE--T-MIDSVID-ARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 275 ~~~~~~l~~~--~-~~~~~l~-~~~r~LkpgG~li~~~~t 310 (319)
+..-..-... . .-..+++ .+.+.|+|||+++.+..+
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 7431110000 0 1235676 789999999999877543
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.9e-07 Score=84.16 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
..+.+.+.......++..|||||+|.|.+|..+++.+. +|+++|+++ ++...++... ..++++++++|+....++
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence 55677888888888889999999999999999999966 899999999 8877776654 237899999999998887
Q ss_pred CC-ceeEEEeccchhh
Q psy8709 266 VE-SVDIIISEWMGYF 280 (319)
Q Consensus 266 ~~-~fD~Iis~~~~~~ 280 (319)
.- .++.|++|.+++.
T Consensus 92 ~l~~~~~vVaNlPY~I 107 (259)
T COG0030 92 SLAQPYKVVANLPYNI 107 (259)
T ss_pred hhcCCCEEEEcCCCcc
Confidence 32 6899999988663
No 193
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.58 E-value=3.2e-07 Score=79.73 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred ceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--------CCceeEEE
Q psy8709 204 HVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--------VESVDIII 273 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--------~~~fD~Ii 273 (319)
+|||||||||-.+..+++. +.-.-.-.|.++ ........+...++.+-..-+..|+...+.+ .++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999884 556777888888 6566666777766643333445565544222 35899999
Q ss_pred eccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
|..+.|.. ..+....+++.+.++|+|||.|++
T Consensus 108 ~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 108 CINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 98888764 446678999999999999999984
No 194
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.56 E-value=5.8e-07 Score=78.32 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=68.7
Q ss_pred CCcceeeccCCCc----hHHHHHHHc---CC---CEEEEEecHH-HHHHHHHHH--------------Hh-----cC---
Q psy8709 201 NNKHVIDVGAGTG----ILSIFAAQA---GA---AKVFAIEKSD-IAYETIDII--------------RK-----NK--- 247 (319)
Q Consensus 201 ~~~~VLDiGcGtG----~ls~~la~~---g~---~~V~gvD~s~-~i~~a~~~~--------------~~-----~g--- 247 (319)
+.-+|+..||+|| .+++.+.+. .. -+++|+|+|+ +++.|++-. ++ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4469999999999 455555551 12 3899999999 998887521 10 01
Q ss_pred -----CCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 248 -----YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 248 -----~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+..+|+|...|+.+...+.+.||+|+|-.+.-++ ..+...++++.+++.|+|||+|++.+..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 1157899999998843445899999996655544 4466789999999999999999976543
No 195
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.56 E-value=5.4e-07 Score=92.95 Aligned_cols=127 Identities=18% Similarity=0.073 Sum_probs=93.1
Q ss_pred cccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHc---------------------------------------
Q psy8709 183 PIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQA--------------------------------------- 222 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~--------------------------------------- 222 (319)
.+-.+.+...++..... .++..++|.+||+|.+.+.++..
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34457888888877766 55789999999999999887652
Q ss_pred ----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC--CceeEEEeccchhhhcc-hhhHHHHHHHH
Q psy8709 223 ----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV--ESVDIIISEWMGYFLLF-ETMIDSVIDAR 294 (319)
Q Consensus 223 ----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~--~~fD~Iis~~~~~~l~~-~~~~~~~l~~~ 294 (319)
...+++|+|+++ +++.|++|+..+|+.+.+++.++|+.+++.+. ++||+|++|+++..-.. ...+..+...+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQL 330 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence 012699999999 99999999999999888999999998876542 47999999998643222 23334443333
Q ss_pred hccc---CCCcEEEeecC
Q psy8709 295 NRFL---KPDGVVCPNRF 309 (319)
Q Consensus 295 ~r~L---kpgG~li~~~~ 309 (319)
.+.| .+|+.+++-+.
T Consensus 331 g~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 331 GRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHhCCCCeEEEEeC
Confidence 3333 48877764443
No 196
>KOG1661|consensus
Probab=98.56 E-value=2e-07 Score=80.44 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred HHHHHHHHhcccc--cCCCcceeeccCCCchHHHHHHHc-C--CCEEEEEecHH-HHHHHHHHHHhcCC---------CC
Q psy8709 186 TESYKSAILNNKS--LFNNKHVIDVGAGTGILSIFAAQA-G--AAKVFAIEKSD-IAYETIDIIRKNKY---------DS 250 (319)
Q Consensus 186 ~~~~~~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~gvD~s~-~i~~a~~~~~~~g~---------~~ 250 (319)
...+...+++.+. +.+|.+.||+|.|+|+++..++.. + ...+.|||.-+ .++.+.+++...-- ..
T Consensus 65 Ap~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred chHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 3455666677766 788999999999999999988863 2 33459999999 99999988865431 25
Q ss_pred cEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 251 ~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
+..++.+|......+..+||.|++...- .++.+++...|+|||.+++-
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEEe
Confidence 7788999998887777899999976421 23344555688998888753
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=1.3e-06 Score=79.31 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=99.4
Q ss_pred CcccHHHHHHHHhcccc----cCCCcceeeccCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEE
Q psy8709 182 TPIRTESYKSAILNNKS----LFNNKHVIDVGAGTGILSIFAAQ-AG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIE 253 (319)
Q Consensus 182 ~~~~~~~~~~~i~~~l~----~~~~~~VLDiGcGtG~ls~~la~-~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~ 253 (319)
.+.+...+.+.+...+. ....-+||||.||.|.....+.. .+ ..+|.-.|.|+ .++..++.++.+|+.+.++
T Consensus 112 IR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~ 191 (311)
T PF12147_consen 112 IRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR 191 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence 44444444444444332 23446999999999988776666 33 36999999999 9999999999999977779
Q ss_pred EEEcCccccc-c--CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 254 VYHKLLEDVE-L--PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 254 ~i~~d~~~~~-~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
|.++|+.+.. + -....++++....+-.+.....+...+..+.+.+.|||+++.+...++
T Consensus 192 f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 192 FEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 9999997752 1 124679999887776666656688889999999999999998876554
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.54 E-value=2.8e-07 Score=91.51 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEecc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEW 276 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~ 276 (319)
.+..+||||||.|.+...+|.. +...++|+|+.. .+..+.+.+...++ .|+.++.+|+..+ .++.+++|.|+.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3568999999999999998884 667999999999 88888888888887 7899998887544 36678899999988
Q ss_pred chhhhcch--h---hHHHHHHHHhcccCCCcEEEeecC
Q psy8709 277 MGYFLLFE--T---MIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 277 ~~~~l~~~--~---~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+-.|.-.. . .-+.++..+.+.|+|||.+.+.+-
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 77664221 1 146789999999999999987653
No 199
>KOG3045|consensus
Probab=98.52 E-value=1.7e-07 Score=83.17 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY 279 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~ 279 (319)
.....|.|+|||.+.++. .. ..+|+..|+-+ .+-.++.+|+.++|+++++.|++++.....
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM 239 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCLSLM 239 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeHhhh
Confidence 344689999999998765 22 23899999887 345678899999999999999999754322
Q ss_pred hhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
+ .++..++.+++|+|+|||.+++...+..+
T Consensus 240 ---g-tn~~df~kEa~RiLk~gG~l~IAEv~SRf 269 (325)
T KOG3045|consen 240 ---G-TNLADFIKEANRILKPGGLLYIAEVKSRF 269 (325)
T ss_pred ---c-ccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence 2 57889999999999999999987665443
No 200
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.51 E-value=4.5e-07 Score=84.58 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=82.1
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHhcCCC-CcE
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--------GAAKVFAIEKSD-IAYETIDIIRKNKYD-SQI 252 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--------g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i 252 (319)
-.+...+.+.+...+...++.+|+|.+||+|.+...+.+. ...+++|+|+++ ++..|.-++..++.. .+.
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 3445777788888888888889999999999998877662 455999999999 888887776655543 234
Q ss_pred EEEEcCccccccC--CCceeEEEeccchhhh--cc----------------hhhHHHHHHHHhcccCCCcEEEee
Q psy8709 253 EVYHKLLEDVELP--VESVDIIISEWMGYFL--LF----------------ETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 253 ~~i~~d~~~~~~~--~~~fD~Iis~~~~~~l--~~----------------~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.+..+|....+.. ..+||+|++|+++... .. ...--.++..+.+.|++||++.+-
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 6888887654432 4689999999976533 00 011124778888999999986543
No 201
>KOG1663|consensus
Probab=98.51 E-value=1.1e-06 Score=77.09 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=92.6
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--- 262 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--- 262 (319)
..+++...+.....+++||+|.=||+-+...|.. ..++|+++|+++ ..+.+.+..+..|...+|++++++..+.
T Consensus 61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 3444455555666789999999999888877774 346999999999 9999999999999999999999998654
Q ss_pred ---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 263 ---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 263 ---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
..+.+.||.++.+. ...+....+.++.++||+||+++++..-++-
T Consensus 141 l~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 23457999999643 1234457778888999999999988755543
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.50 E-value=3.9e-07 Score=86.93 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred cceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEeccch
Q psy8709 203 KHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEWMG 278 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~~~ 278 (319)
.+|||+.||+|..++.++.. |..+|+++|+++ .++.+++|++.|+. .+++++++|+..... ...+||+|..++.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 48999999999999999986 678999999999 99999999999987 478999999876632 13579999988732
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
....++..+.+.+++||+++++...
T Consensus 125 -------s~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 125 -------TPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred -------CcHHHHHHHHHhcccCCEEEEEecc
Confidence 2235777888899999999988543
No 203
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.50 E-value=2.2e-07 Score=85.45 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=78.2
Q ss_pred cceeeccCCCc----hHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH------------------h-----cC--
Q psy8709 203 KHVIDVGAGTG----ILSIFAAQA-G----AAKVFAIEKSD-IAYETIDIIR------------------K-----NK-- 247 (319)
Q Consensus 203 ~~VLDiGcGtG----~ls~~la~~-g----~~~V~gvD~s~-~i~~a~~~~~------------------~-----~g-- 247 (319)
-+|+..||+|| .+++.+.+. + .-+|+|+|+|+ +++.|++-.- . .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 69999999999 445555553 1 23799999999 9999886420 0 01
Q ss_pred -----CCCcEEEEEcCccccccC-CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 248 -----YDSQIEVYHKLLEDVELP-VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 248 -----~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+...|+|...|+.+.+++ .+.||+|+|..++.++ ..+....++..+++.|+|||+|++.+.-
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 125678888888775433 5789999996665544 3467889999999999999999976653
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.50 E-value=2.9e-07 Score=77.48 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=56.0
Q ss_pred ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCc-eeEEEeccch
Q psy8709 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVES-VDIIISEWMG 278 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~-fD~Iis~~~~ 278 (319)
.|+|+.||.|..++.+++. ..+|+++|+++ .++.|+.|++-.|..+++.++++|+.+.. +.... +|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6899999999999999998 45999999999 99999999999999899999999998763 22122 8999998754
No 205
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.50 E-value=3.8e-07 Score=86.63 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=69.3
Q ss_pred ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
...+.+.+.+++.++..++ .+||+-||.|.++..+++.. .+|+|||.++ +++.|+++++.|++ ++++|+.++++++
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccch
Confidence 3347788888888887766 79999999999999999984 5999999999 99999999999999 7899999887654
Q ss_pred c----------------cCCCceeEEEeccchhhh
Q psy8709 263 E----------------LPVESVDIIISEWMGYFL 281 (319)
Q Consensus 263 ~----------------~~~~~fD~Iis~~~~~~l 281 (319)
. .....+|+|+.+|+--.+
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 112368999999876543
No 206
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.50 E-value=6.5e-07 Score=80.12 Aligned_cols=94 Identities=23% Similarity=0.233 Sum_probs=69.9
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY 279 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~ 279 (319)
...++||||+|.|..+..++.. ..+|++.|.|+ | +.++++.|+ +++ +..+..-...+||+|.|-.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~M----r~rL~~kg~----~vl--~~~~w~~~~~~fDvIscLNv-- 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPM----RWRLSKKGF----TVL--DIDDWQQTDFKFDVISCLNV-- 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHH----HHHHHhCCC----eEE--ehhhhhccCCceEEEeehhh--
Confidence 4468999999999999999886 56999999999 6 444555665 222 22223223468999997444
Q ss_pred hhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+..-..+..+|+.+++.|+|+|++++..
T Consensus 161 -LDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 161 -LDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 3444678899999999999999998654
No 207
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.2e-06 Score=83.36 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=92.0
Q ss_pred cccccCCCcceeeccCCCchHHHHHHHcC---CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cC-CC
Q psy8709 195 NNKSLFNNKHVIDVGAGTGILSIFAAQAG---AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LP-VE 267 (319)
Q Consensus 195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g---~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~-~~ 267 (319)
..+...+|.+|||+.++.|.=+..++... ...|+++|.++ -+....++++..|. .++.+++.|....+ .+ .+
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecccccccccccccC
Confidence 45678888999999999999999888852 23579999999 99999999999999 45788888876542 22 23
Q ss_pred ceeEEEeccchhhhc------------ch-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 268 SVDIIISEWMGYFLL------------FE-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~------------~~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
+||.|+.+.+..... .. ....++|..+.++|||||.|+.++||+..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 699999876543211 11 22467899999999999999999999864
No 208
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.46 E-value=1.2e-07 Score=91.73 Aligned_cols=120 Identities=13% Similarity=0.215 Sum_probs=76.3
Q ss_pred HHHHHHHhccccc--CCC--cceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 187 ESYKSAILNNKSL--FNN--KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 187 ~~~~~~i~~~l~~--~~~--~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
..+.+.+.+.++. ..+ ..+||+|||+|.++..+...+. .+..+-....-+...+.+.+.|++.-+.+ .-...+
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~--~~s~rL 175 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGV--LGSQRL 175 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhh--hccccc
Confidence 4555555555544 222 4799999999999999999865 33333332211122233444565332222 123457
Q ss_pred ccCCCceeEEEeccch-hhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 263 ELPVESVDIIISEWMG-YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 263 ~~~~~~fD~Iis~~~~-~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
++|...||+|.|.-.. .|.... ..+|-++.|+|+|||+++.+...++
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~---g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND---GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhcc---cceeehhhhhhccCceEEecCCccc
Confidence 8999999999985432 232222 3578899999999999999888766
No 209
>PRK04148 hypothetical protein; Provisional
Probab=98.44 E-value=2e-06 Score=69.98 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=60.7
Q ss_pred HHHHHHhcccccCCCcceeeccCCCch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~-ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
.+.+++.+.+...++.++||||||+|. ++..+++.|. .|+++|+++ .++.+++ + .+.++.+|+.+..+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~----~----~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKK----L----GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----h----CCeEEECcCCCCCHH
Confidence 355666666666667899999999996 8888888876 999999999 6555543 3 357899999876543
Q ss_pred -CCceeEEEec
Q psy8709 266 -VESVDIIISE 275 (319)
Q Consensus 266 -~~~fD~Iis~ 275 (319)
-+.+|+|.+.
T Consensus 74 ~y~~a~liysi 84 (134)
T PRK04148 74 IYKNAKLIYSI 84 (134)
T ss_pred HHhcCCEEEEe
Confidence 3679999974
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.44 E-value=1e-06 Score=80.80 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=86.9
Q ss_pred cceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcC--C-CCcEEEEEcCcccccc-CCCceeEEEecc
Q psy8709 203 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNK--Y-DSQIEVYHKLLEDVEL-PVESVDIIISEW 276 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g--~-~~~i~~i~~d~~~~~~-~~~~fD~Iis~~ 276 (319)
++||-+|.|.|..++.+.+.. ..+++.+|+++ .++.+++.+.... . .++++++.+|..++-- ..++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999974 67999999999 9999998875432 2 3799999999877632 224899999875
Q ss_pred chhhhcchhh--HHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709 277 MGYFLLFETM--IDSVIDARNRFLKPDGVVCPNRFTLSLCG 315 (319)
Q Consensus 277 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~t~~~~~ 315 (319)
.-. ...... -..+++.+++.|+|+|+++.++.+.++..
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 322 111011 25789999999999999999977766553
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=98.43 E-value=1.6e-06 Score=78.76 Aligned_cols=103 Identities=20% Similarity=0.087 Sum_probs=78.9
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc--C-CCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN--K-YDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~--g-~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
.+.++||-+|.|.|...+.+++++. +|+-||+++ +++.+++.+... + -+++++++.. +. ....++||+||.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 4458999999999999999999864 999999999 999998844321 1 2367887762 21 1123689999987
Q ss_pred cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709 276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC 314 (319)
Q Consensus 276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~ 314 (319)
... -..+.+.+++.|+|||+++....+.++.
T Consensus 147 s~~--------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 147 QEP--------DIHKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred CCC--------ChHHHHHHHHhcCCCcEEEECCCCcccC
Confidence 531 1467788999999999999988877754
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.41 E-value=4.4e-07 Score=81.97 Aligned_cols=112 Identities=17% Similarity=0.094 Sum_probs=80.9
Q ss_pred CCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcC---CCCcEEEEEcCccccc-cCCC-ceeEEE
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNK---YDSQIEVYHKLLEDVE-LPVE-SVDIII 273 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g---~~~~i~~i~~d~~~~~-~~~~-~fD~Ii 273 (319)
+.++||-+|.|.|..+..+.+.+ ..+++.||+++ +++.+++.+.... ..++++++.+|...+- -..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 56899999999999999999875 67999999999 9999988765432 2369999999997652 2224 899999
Q ss_pred eccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 274 SEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 274 s~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.+......... -.-..+++.+.+.|+|||+++.+..+.+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 86543111110 1135788999999999999998764443
No 213
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.36 E-value=1.3e-06 Score=80.49 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=91.1
Q ss_pred ccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCcee
Q psy8709 196 NKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVD 270 (319)
Q Consensus 196 ~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD 270 (319)
.+...++..|||+++|.|.-+..++.. +.+.+++.|+++ -+.....+++..|. .++.+...|..... .+...||
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccc
Confidence 356677889999999999999888884 357999999999 99999999999998 67888888877652 3334699
Q ss_pred EEEeccchhhhc----c--------h-------hhHHHHHHHHhccc----CCCcEEEeecCccee
Q psy8709 271 IIISEWMGYFLL----F--------E-------TMIDSVIDARNRFL----KPDGVVCPNRFTLSL 313 (319)
Q Consensus 271 ~Iis~~~~~~l~----~--------~-------~~~~~~l~~~~r~L----kpgG~li~~~~t~~~ 313 (319)
.|+.+.+..... + . ....++|..+.+++ ||||+++.++||+.-
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 999876543221 0 1 12456799999999 999999999999853
No 214
>KOG2915|consensus
Probab=98.35 E-value=2.7e-06 Score=76.19 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=87.4
Q ss_pred HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--
Q psy8709 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-- 265 (319)
Q Consensus 191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-- 265 (319)
..|+..+...+|.+|++-|.|+|.++.++++. +-++++..|+.. ..++|++-.+..++.+++++.+.|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 37788889999999999999999999999994 557999999999 9999999999999999999999999877654
Q ss_pred CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCc-EEE
Q psy8709 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG-VVC 305 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG-~li 305 (319)
...+|.|+.+.+-.|. .+.-+++.||.+| +++
T Consensus 175 s~~aDaVFLDlPaPw~--------AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 175 SLKADAVFLDLPAPWE--------AIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccccceEEEcCCChhh--------hhhhhHHHhhhcCceEE
Confidence 4689999987664442 2333445777765 444
No 215
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=1e-06 Score=75.29 Aligned_cols=108 Identities=26% Similarity=0.289 Sum_probs=83.0
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~ 265 (319)
..+.+.+..+.+...+++|||+|+|+|..++..++.|+..|++.|+.+ ......-|.+.||. .+.+...|... .
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~ 139 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---S 139 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---C
Confidence 345667777778888999999999999999999999999999999999 77777888888886 78888888754 3
Q ss_pred CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcE
Q psy8709 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 303 (319)
...||+|+..-++|- .....+++. +.+.|+..|.
T Consensus 140 ~~~~Dl~LagDlfy~---~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 140 PPAFDLLLAGDLFYN---HTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred CcceeEEEeeceecC---chHHHHHHH-HHHHHHhCCC
Confidence 468999997655432 244455555 4455555444
No 216
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.30 E-value=4.1e-06 Score=76.21 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=75.7
Q ss_pred CcceeeccCCCc----hHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHh-----cCC-----------------
Q psy8709 202 NKHVIDVGAGTG----ILSIFAAQAG------AAKVFAIEKSD-IAYETIDIIRK-----NKY----------------- 248 (319)
Q Consensus 202 ~~~VLDiGcGtG----~ls~~la~~g------~~~V~gvD~s~-~i~~a~~~~~~-----~g~----------------- 248 (319)
.-+|+-+||+|| .+++.+.+.+ .-+|+|+|++. +++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 468999999999 5555565542 24899999999 99888742211 111
Q ss_pred ------CCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 249 ------DSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 249 ------~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
...|.|...|+....+..+.||+|+|-.+.-+ ..++...+++...+..|+|||+|++-+.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIY-Fd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIY-FDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEe-eCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 13566667777665534478999999544333 3456778999999999999999997554
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.29 E-value=3.1e-06 Score=84.68 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=76.8
Q ss_pred CCcceeeccCCCchHHHHHHHcC---------CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----cC
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAG---------AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----LP 265 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g---------~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----~~ 265 (319)
...+|||.|||+|.+...++... ..+++|+|+++ .+..+..++...+. ..+.+..+|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 34689999999999998877631 14789999999 99999888876652 23455555543211 11
Q ss_pred CCceeEEEeccchhhhcch-------------------------------------------hhHHHHH-HHHhcccCCC
Q psy8709 266 VESVDIIISEWMGYFLLFE-------------------------------------------TMIDSVI-DARNRFLKPD 301 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~-------------------------------------------~~~~~~l-~~~~r~Lkpg 301 (319)
.+.||+||+|+|+--.... .....++ ..+.++|+||
T Consensus 110 ~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~ 189 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKN 189 (524)
T ss_pred cCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCC
Confidence 2589999999987543210 0011133 5678999999
Q ss_pred cEEEeecCcceeec
Q psy8709 302 GVVCPNRFTLSLCG 315 (319)
Q Consensus 302 G~li~~~~t~~~~~ 315 (319)
|++.+-.++-++..
T Consensus 190 G~~~~I~P~s~l~~ 203 (524)
T TIGR02987 190 GYVSIISPASWLGD 203 (524)
T ss_pred CEEEEEEChHHhcC
Confidence 99887666655543
No 218
>KOG0822|consensus
Probab=98.26 E-value=2.6e-06 Score=82.42 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=87.6
Q ss_pred cceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709 203 KHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW 276 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~ 276 (319)
..|+-+|+|-|-+.....+. -.-++++++.+| ++-... +.+-....++++++.+|+.....|.++.|+++|+.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~-~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ-NRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh-hhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 36788899999776544432 123899999999 443333 34444556899999999999986668999999998
Q ss_pred chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA 318 (319)
Q Consensus 277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~ 318 (319)
.+.+-.. +.-++.|..+.++|||+|+.||...|-|++|+.+
T Consensus 448 LGSFGDN-ELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS 488 (649)
T KOG0822|consen 448 LGSFGDN-ELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMS 488 (649)
T ss_pred hccccCc-cCCHHHHHHHHhhcCCCceEccchhhhhhccccc
Confidence 7765333 3446788999999999999999999999999864
No 219
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.25 E-value=2e-05 Score=67.40 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=82.9
Q ss_pred hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH--HHHHHHHhcccccC-
Q psy8709 125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT--ESYKSAILNNKSLF- 200 (319)
Q Consensus 125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~--~~~~~~i~~~l~~~- 200 (319)
.|+|.++|.....+ ..+.++.++||+|||||.++++.+..+ ..+++|+|.++.+... .+..++-.+++...
T Consensus 16 p~TK~EIRal~ls~-----L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~ 90 (187)
T COG2242 16 PMTKEEIRALTLSK-----LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE 90 (187)
T ss_pred CCcHHHHHHHHHHh-----hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 38999999887776 568899999999999999999999777 8999999998776665 44444444443221
Q ss_pred ----------CCcceeeccCCCchHHHHH---HH--cCCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709 201 ----------NNKHVIDVGAGTGILSIFA---AQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYD 249 (319)
Q Consensus 201 ----------~~~~VLDiGcGtG~ls~~l---a~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~ 249 (319)
+.-..+=+|.| |.+...+ .. .+..++++-=+.- .+..+.+.+++.|..
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 12345557777 5443322 22 2344676666666 777888888888764
No 220
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.24 E-value=2.4e-06 Score=78.88 Aligned_cols=55 Identities=33% Similarity=0.430 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHH
Q psy8709 135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKS 191 (319)
Q Consensus 135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~ 191 (319)
....++... ..++++|||+|||||+|++.|+++|+++|+|+|+|+.......-+.
T Consensus 150 lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 150 LCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp HHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHH
Confidence 334444333 5688999999999999999999999999999999988766644443
No 221
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.23 E-value=1.1e-05 Score=73.44 Aligned_cols=101 Identities=24% Similarity=0.249 Sum_probs=75.1
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh----c-----------------------------
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK----N----------------------------- 246 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~----~----------------------------- 246 (319)
...+||-.|||.|+++..++..|. .+.|.|.|- |+-...-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 346899999999999999999988 999999999 75433322211 0
Q ss_pred ------CCCCcEEEEEcCccccccCC---CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 247 ------KYDSQIEVYHKLLEDVELPV---ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 247 ------g~~~~i~~i~~d~~~~~~~~---~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
....++....||+.++-.+. ++||+|++. +++....++-..+..+.++|||||+.|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 01135566677777664443 699999965 455666778999999999999999655
No 222
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=5.9e-06 Score=72.69 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=78.2
Q ss_pred CcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc-eeEEEeccch
Q psy8709 202 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES-VDIIISEWMG 278 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~-fD~Iis~~~~ 278 (319)
+.+++|||+|.|.-+..++- .+..+|+-+|... -+...+......++ +|++++++.++++... .. ||+|.|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 57999999999999988774 4555799999998 88888888888888 7899999999998643 23 999998665
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 456777888889999988864
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.22 E-value=3e-06 Score=78.26 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-- 263 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-- 263 (319)
+.+.+++.+...++..++|.+||.|..+..+++.. ..+|+|+|.++ +++.+++.+.. .++++++++++.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence 44556666666778899999999999999999863 46999999999 99999888755 368999999998763
Q ss_pred cCC--CceeEEEecc
Q psy8709 264 LPV--ESVDIIISEW 276 (319)
Q Consensus 264 ~~~--~~fD~Iis~~ 276 (319)
++. .++|.|+++.
T Consensus 84 l~~~~~~vDgIl~DL 98 (296)
T PRK00050 84 LAEGLGKVDGILLDL 98 (296)
T ss_pred HHcCCCccCEEEECC
Confidence 221 2799999864
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.22 E-value=4e-06 Score=76.46 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=74.6
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
....+.+.+.+.+...++..|||+|+|+|.++..+++.+ .+++++|+++ +++..++... ..++++++.+|+..+.
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD 89 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence 356778888888888888999999999999999999987 6999999999 7777776554 2368999999999887
Q ss_pred cCC---CceeEEEeccchh
Q psy8709 264 LPV---ESVDIIISEWMGY 279 (319)
Q Consensus 264 ~~~---~~fD~Iis~~~~~ 279 (319)
.+. .....|++|.+++
T Consensus 90 ~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp GGGHCSSSEEEEEEEETGT
T ss_pred cHHhhcCCceEEEEEeccc
Confidence 663 4678888887753
No 225
>KOG2187|consensus
Probab=98.21 E-value=4.4e-06 Score=80.92 Aligned_cols=121 Identities=21% Similarity=0.142 Sum_probs=88.5
Q ss_pred ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
...+.+...+.+++.+..++.+||+.||||.++..+++. .++|+||++++ .+..|+.+++.||+ .|.+|++|.++++
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 345778888889999999999999999999999998886 66999999999 99999999999999 7999999977765
Q ss_pred c---c--CCCcee-EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 263 E---L--PVESVD-IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 263 ~---~--~~~~fD-~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
- + ..++-+ ++|.+++--. .-..++..+.++-++- +++.-+|+++
T Consensus 444 ~~sl~~~~~~~~~~v~iiDPpR~G-----lh~~~ik~l~~~~~~~-rlvyvSCn~~ 493 (534)
T KOG2187|consen 444 FPSLLTPCCDSETLVAIIDPPRKG-----LHMKVIKALRAYKNPR-RLVYVSCNPH 493 (534)
T ss_pred cchhcccCCCCCceEEEECCCccc-----ccHHHHHHHHhccCcc-ceEEEEcCHH
Confidence 2 1 112334 5556665322 2234555555554454 3444445444
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.20 E-value=1.1e-05 Score=70.74 Aligned_cols=98 Identities=26% Similarity=0.276 Sum_probs=69.3
Q ss_pred eeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc
Q psy8709 205 VIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL 282 (319)
Q Consensus 205 VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~ 282 (319)
|.||||--|+++..+.+.|. .+++++|+++ -++.|++++...++.+++++..+|..+.-.+.+..|.|+..+|+-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999764 5799999999 9999999999999999999999997654333344899998887653
Q ss_pred chhhHHHHHHHHhcccCCCcEEEee
Q psy8709 283 FETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 283 ~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
....+|.+....++....|++.
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEe
Confidence 3456666666555554455543
No 227
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.19 E-value=8.4e-06 Score=71.52 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=68.4
Q ss_pred HHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHH-------HhcCC-CCcEEEEEc
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDII-------RKNKY-DSQIEVYHK 257 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~-------~~~g~-~~~i~~i~~ 257 (319)
.....++..+.+.++...+|+|||.|.....++- .++.+.+|||+.+ ..+.|.... +..|. ..++++.++
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 3444556667788889999999999999877665 5787899999999 666655432 22333 357888999
Q ss_pred CccccccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 258 LLEDVELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 258 d~~~~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
|+.+.+.. -...|+|++|... +.+.+...|.+...-||+|-+++
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~----F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTC----FDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TT----T-HHHHHHHHHHHTTS-TT-EEE
T ss_pred CccccHhHhhhhcCCCEEEEeccc----cCHHHHHHHHHHHhcCCCCCEEE
Confidence 98765321 1357999987642 23455566677778899887765
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.15 E-value=4.3e-06 Score=71.70 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=62.3
Q ss_pred CCcceeeccCCCchHHHHHHHcC--CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cC--CCc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LP--VES 268 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~--~~~ 268 (319)
++.+|||+||++|.++..+.+.+ ..+|+|+|+.++ ... ..+.++.+|+.+.. ++ .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999986 579999999983 111 45667777765431 11 268
Q ss_pred eeEEEeccchhhhcc--------hhhHHHHHHHHhcccCCCcEEEee
Q psy8709 269 VDIIISEWMGYFLLF--------ETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 269 fD~Iis~~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
||+|+|+........ .......+.-+.+.|+|||.++.-
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 999999873222111 122344455666789999988753
No 229
>KOG2730|consensus
Probab=98.15 E-value=3e-06 Score=73.68 Aligned_cols=76 Identities=17% Similarity=0.047 Sum_probs=64.7
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~fD~Iis~ 275 (319)
....|+|.-||.|..+..++..+. .|++||+++ -+..|+.|++-.|.+++|+|++||+.++ .+....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 447899999999999988888866 999999999 9999999999999999999999999875 3344567888865
Q ss_pred cc
Q psy8709 276 WM 277 (319)
Q Consensus 276 ~~ 277 (319)
++
T Consensus 173 pp 174 (263)
T KOG2730|consen 173 PP 174 (263)
T ss_pred CC
Confidence 54
No 230
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2.1e-06 Score=78.92 Aligned_cols=44 Identities=39% Similarity=0.582 Sum_probs=39.7
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY 189 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~ 189 (319)
..+++++||+|||||+|++.++++|+.+++|+|+|+.......-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH
Confidence 45999999999999999999999999999999999987776444
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.13 E-value=3.3e-05 Score=61.64 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=70.2
Q ss_pred eeeccCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc--cccCC-CceeEEEeccch
Q psy8709 205 VIDVGAGTGILSIFAAQAGA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED--VELPV-ESVDIIISEWMG 278 (319)
Q Consensus 205 VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~--~~~~~-~~fD~Iis~~~~ 278 (319)
++|+|||+|... .+..... ..++|+|+++ ++..+.......+. ..+.+..++... .++.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 4444322 3899999999 77774443322111 116788888776 56654 489999444443
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
++. . ....+.++.+.|+|+|.+++......
T Consensus 130 ~~~---~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLL---P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcC---C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 332 1 67889999999999999987766543
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.08 E-value=2.4e-06 Score=66.63 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=46.5
Q ss_pred eeccCCCchHHHHHHHc----CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEeccchh
Q psy8709 206 IDVGAGTGILSIFAAQA----GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEWMGY 279 (319)
Q Consensus 206 LDiGcGtG~ls~~la~~----g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~ 279 (319)
||+|+..|..+..+++. +..+++++|..+..+...+.+++.++.++++++.++..+. .++.+++|+|+.+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999888877763 2237999999985444556666667777899999999765 23347999999877522
Q ss_pred hhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 280 FLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.+....-+..+.+.|+|||+++++.
T Consensus 81 ----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 ----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2455667888999999999999875
No 233
>KOG1331|consensus
Probab=98.06 E-value=3.8e-06 Score=75.88 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=77.0
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF 280 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~ 280 (319)
+..++|+|||.|-.... .+...++|.|.+. .+..+++ .+ ......+|+.+++++..+||.+++..+.||
T Consensus 46 gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~----~~---~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR----SG---GDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred cceeeecccCCcccCcC---CCcceeeecchhhhhcccccc----CC---CceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 67999999999965322 2445899999999 6555442 11 126788999999999999999999999999
Q ss_pred hcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 281 LLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 281 l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+........+++++.|.|+|||...+
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 98888899999999999999999664
No 234
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=3e-05 Score=67.50 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=70.1
Q ss_pred cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cCCCc
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LPVES 268 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~~~~ 268 (319)
+.++..|+|+|+..|.++..+++. + ...|+|+|+.|| ... .++.++++|+.+-+ ++..+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------~~~-~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------KPI-PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------ccC-CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 445689999999999999999985 2 235999999992 112 46999999997653 34456
Q ss_pred eeEEEeccch----hh----hcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 269 VDIIISEWMG----YF----LLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 269 fD~Iis~~~~----~~----l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
+|+|+|+..- ++ .........++.-+..+|+|||.++.-
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 8999987642 11 111223445566777899999999843
No 235
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.02 E-value=2.8e-05 Score=72.59 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=64.1
Q ss_pred cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
..++.++||+||++|.++..+.+.|. +|+|||..+|... +... ++|+.+.+|......+.+.+|+++|+...
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~----L~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQS----LMDT---GQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHh----hhCC---CCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 46788999999999999999999988 9999998884322 2222 57888888876664435789999998752
Q ss_pred hhhcchhhHHHHHHHHhcccCCC
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPD 301 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~Lkpg 301 (319)
.+..+..-+.++|..|
T Consensus 281 -------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 -------KPARVAELMAQWLVNG 296 (357)
T ss_pred -------CHHHHHHHHHHHHhcC
Confidence 2334444555555444
No 236
>KOG1122|consensus
Probab=98.02 E-value=3.8e-05 Score=72.82 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=90.5
Q ss_pred cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCcee
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVD 270 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD 270 (319)
+...++.+|||..+..|.-+..+|.. +-+.|++.|.+. -+.....++...|+ .+..+.+.|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccC-cccc
Confidence 45678899999999999888777772 456899999999 89999999999998 56777788876553 44 3899
Q ss_pred EEEeccchhh--hc-----------------chhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 271 IIISEWMGYF--LL-----------------FETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 271 ~Iis~~~~~~--l~-----------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
-|+...+... +. ......++|..+..++++||+|+.++|++..
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 9997765443 11 1223567888899999999999999999864
No 237
>KOG1269|consensus
Probab=98.02 E-value=7.7e-06 Score=77.63 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=86.7
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG 278 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~ 278 (319)
.++..++|+|||.|.....++......++|++.++ -+..+.......++.++..++.+++-+.++++..||.+-+.-..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 34458999999999999999997777999999999 77777776666666666667888999989999999999975554
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
.+ .+....++.+++|+++|||+++.
T Consensus 189 ~~---~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 189 CH---APDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred cc---CCcHHHHHHHHhcccCCCceEEe
Confidence 43 37788999999999999999884
No 238
>KOG3178|consensus
Probab=98.00 E-value=1.4e-05 Score=74.33 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=75.4
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l 281 (319)
...+|+|.|.|.++..+... ..++-++++.. .+..+...+. . .|+.+-+|...- .| +-|+|++.|+.|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TP--KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CC--CcCeEEEEeecccC
Confidence 68999999999999998884 44788888887 5555544443 2 277788888765 44 45799999998886
Q ss_pred cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
.. ++..++|+++++.|+|||.+++-..
T Consensus 250 tD-edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TD-EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred Ch-HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 55 6789999999999999999885443
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.98 E-value=3.6e-05 Score=70.93 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccccCC-----CcceeeccCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEE
Q psy8709 186 TESYKSAILNNKSLFN-----NKHVIDVGAGTG-ILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYH 256 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~-----~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~ 256 (319)
...+..++.+.+.... .-++||||+|.. +..+..++ .+. +++|.|+++ .++.|++++..| ++.++|+++.
T Consensus 82 R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 3455555555544322 347999999966 44555555 454 999999999 999999999999 9999999986
Q ss_pred cCccc-----cccCCCceeEEEeccchhhh
Q psy8709 257 KLLED-----VELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 257 ~d~~~-----~~~~~~~fD~Iis~~~~~~l 281 (319)
..-.. +..+.+.||+.+||+++|--
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred cCCccccchhhhcccceeeEEecCCccccC
Confidence 64322 12234689999999998754
No 240
>KOG1709|consensus
Probab=97.95 E-value=4.9e-05 Score=66.10 Aligned_cols=100 Identities=24% Similarity=0.323 Sum_probs=78.0
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC--CCcEEEEEcCcccc--ccCCCceeEEEe
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY--DSQIEVYHKLLEDV--ELPVESVDIIIS 274 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~--~~~i~~i~~d~~~~--~~~~~~fD~Iis 274 (319)
.+|.+||.||-|-|+...++.+++..+-+-|+..+ .+++.+. .|. ..+|.++.+..++. .++++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccccCcceeEe
Confidence 67789999999999999999888766777889999 6655543 433 26888888888776 467889999997
Q ss_pred ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+...- .-+++..+.+.+.++|||+|++-+
T Consensus 176 DTy~e---~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 176 DTYSE---LYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred echhh---HHHHHHHHHHHHhhhcCCCceEEE
Confidence 64322 226778888899999999998753
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.95 E-value=8.1e-05 Score=67.98 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=64.0
Q ss_pred cceeeccCCCchHH-HHHHHc-C-CCEEEEEecHH-HHHHHHHHHH-hcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709 203 KHVIDVGAGTGILS-IFAAQA-G-AAKVFAIEKSD-IAYETIDIIR-KNKYDSQIEVYHKLLEDVELPVESVDIIISEWM 277 (319)
Q Consensus 203 ~~VLDiGcGtG~ls-~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~-~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~ 277 (319)
.+|+=||||.=-++ +.+++. + ...|+++|+++ .++.+++.++ ..++..++.|+.+|..+.......||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 57888888865444 444442 3 34899999999 9999998887 557778999999999877655578999996543
Q ss_pred hhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
-. .......+++..+.+.++||..++.-..+
T Consensus 202 Vg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 202 VG--MDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cc--cccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 11 12246788999999999999998865443
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.95 E-value=0.0001 Score=64.72 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=80.4
Q ss_pred HHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709 187 ESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE 260 (319)
Q Consensus 187 ~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~ 260 (319)
.++...+++- +++.++.+||-+|+.+|.....++.. + .+.|+|++.|+ ........++.. .|+--+.+|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence 5555555443 56788999999999999998888883 4 56999999999 766666666655 58888899987
Q ss_pred ccc---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 261 DVE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 261 ~~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
... .-.+.+|+|+++-. ..+...-++.++...||+||.+++..
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 542 22469999998754 22456677888889999999998654
No 243
>PRK10742 putative methyltransferase; Provisional
Probab=97.87 E-value=6.4e-05 Score=67.36 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=68.3
Q ss_pred HHHhcccccCCCc--ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc------C--CCCcEEEEEcCc
Q psy8709 191 SAILNNKSLFNNK--HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN------K--YDSQIEVYHKLL 259 (319)
Q Consensus 191 ~~i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~------g--~~~~i~~i~~d~ 259 (319)
+.+.+...+.++. +|||+-+|+|..+..++..|+ +|+++|.++ +.....++++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 3444555566666 899999999999999999988 599999999 777777777653 2 225789999998
Q ss_pred ccccc-CCCceeEEEeccchhh
Q psy8709 260 EDVEL-PVESVDIIISEWMGYF 280 (319)
Q Consensus 260 ~~~~~-~~~~fD~Iis~~~~~~ 280 (319)
.++-. ...+||+|+.++|+.+
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC
Confidence 76531 2247999999999754
No 244
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.87 E-value=4.2e-05 Score=63.07 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCCcceeeccCCCchHHHHHHH-----cCCCEEEEEecHH-HHHHHHHHHHhcC--CCCcEEEEEcCccccccCCCceeE
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQ-----AGAAKVFAIEKSD-IAYETIDIIRKNK--YDSQIEVYHKLLEDVELPVESVDI 271 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~-----~g~~~V~gvD~s~-~i~~a~~~~~~~g--~~~~i~~i~~d~~~~~~~~~~fD~ 271 (319)
.+...|+|+|||.|+++..++. ....+|+|+|.++ .++.+.+..+..+ +..+.++..+++..... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 5567999999999999999998 5556999999999 8899988887776 44567777777665432 356677
Q ss_pred EEe
Q psy8709 272 IIS 274 (319)
Q Consensus 272 Iis 274 (319)
++.
T Consensus 103 ~vg 105 (141)
T PF13679_consen 103 LVG 105 (141)
T ss_pred EEE
Confidence 774
No 245
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=3.5e-05 Score=65.84 Aligned_cols=44 Identities=39% Similarity=0.555 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.....++++|+|+|||||.+++.++.+|+.+|+++|+|+.....
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei 83 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEI 83 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHH
Confidence 45678999999999999999999999999999999999755444
No 246
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.82 E-value=4.5e-05 Score=66.68 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=75.0
Q ss_pred HHHHHHHHhcccccCC----CcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 186 TESYKSAILNNKSLFN----NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~----~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
...+.+|+.......+ .-++|||||=+...... ..+.-.|+.||+++ ..-.+.+.|+.+
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~ 94 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFME 94 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeecccc
Confidence 3455555555443222 25999999975544332 33444799999998 234567888888
Q ss_pred cccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcE
Q psy8709 262 VELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303 (319)
Q Consensus 262 ~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 303 (319)
.++| .++||+|.+..+..++......-..+..++++|+|+|.
T Consensus 95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 7764 57999999999999988888889999999999999999
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.81 E-value=0.00014 Score=66.79 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709 190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV 266 (319)
Q Consensus 190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~ 266 (319)
...+...++.....+|||+|||.|.....+... ...+++++|.|+ |++.++..+........... .........+.
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccccC
Confidence 333444445556689999999999876665552 356899999999 99988887665432111111 11111111222
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
...|+|++..++.-+.. .....+++.+.+.+++ =.++++..|
T Consensus 101 ~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 34599998777666666 6677888888777766 333444443
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.80 E-value=0.00011 Score=68.52 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=84.1
Q ss_pred CcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHH--HH---hcCC-CCcEEEEEcCccccc-cCCCceeEE
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDI--IR---KNKY-DSQIEVYHKLLEDVE-LPVESVDII 272 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~--~~---~~g~-~~~i~~i~~d~~~~~-~~~~~fD~I 272 (319)
..+||-+|.|.|...+.+.+.+ ..+++-+|++| |++.++.+ ++ .+.+ +++++++..|+.++- -..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 3689999999999999999986 78999999999 99988843 22 2222 468999999987763 234689999
Q ss_pred Eeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709 273 ISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNRFTLSLCG 315 (319)
Q Consensus 273 is~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~ 315 (319)
|.+.+-..-. ..-.-.++..-+.+.|+++|.++++..+.|..|
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 9865321110 111124566778899999999999888777654
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.80 E-value=0.00019 Score=67.12 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=71.6
Q ss_pred CCcceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEE--EEcCcccc----ccC--C
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEV--YHKLLEDV----ELP--V 266 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~--i~~d~~~~----~~~--~ 266 (319)
++..++|+|||+|.-+..+.+. ....++++|+|. +++.+.+.+....+ +.+++ +.+|..+. +.+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 4468999999999887665552 134799999999 99999988874434 34444 88888653 111 1
Q ss_pred CceeEEEecc-chhhhcchhhHHHHHHHHhc-ccCCCcEEEee
Q psy8709 267 ESVDIIISEW-MGYFLLFETMIDSVIDARNR-FLKPDGVVCPN 307 (319)
Q Consensus 267 ~~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r-~LkpgG~li~~ 307 (319)
....+++.-+ ....+ .......+|+++++ .|+|||.|++.
T Consensus 155 ~~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2356666522 22222 23556789999999 99999999863
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.76 E-value=0.00017 Score=65.36 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred cceeeccCC--CchHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----------cC-
Q psy8709 203 KHVIDVGAG--TGILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----------LP- 265 (319)
Q Consensus 203 ~~VLDiGcG--tG~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----------~~- 265 (319)
...||+||| |-......++ .+..+|+-+|.++ .+..++..+..+.- ....++.+|+.+.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 589999999 3345556665 4667999999999 88888888876632 34899999997642 11
Q ss_pred CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
..++ .++...+.||+..++++..++......|.||.+|++++.|--.
T Consensus 149 ~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 149 DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 1333 4445567788888788999999999999999999999987543
No 251
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.75 E-value=8.8e-05 Score=60.72 Aligned_cols=57 Identities=28% Similarity=0.355 Sum_probs=48.4
Q ss_pred ceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
+++|+|||.|..+..+++.+. .+++++|+++ +.+.++++++.+++ .+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeC
Confidence 489999999999999998754 3899999999 99999999998887 468888766654
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00012 Score=64.86 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=73.5
Q ss_pred HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEE-EcCccccccC
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVY-HKLLEDVELP 265 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i-~~d~~~~~~~ 265 (319)
.+...+-..--..+++.+||+|+.||.++..+.+.|+++|+|+|... .+..-. +. .+++..+ ..++..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~---d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RN---DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hc---CCcEEEEecCChhhCCHH
Confidence 33334333334556789999999999999999999999999999988 333221 11 1344443 3455544311
Q ss_pred --CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 266 --VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 266 --~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
.+..|+++++..+ -.+..+|..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvSF------ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVSF------ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEeeh------hhHHHHHHHHHHhcCCCceEEE
Confidence 2478899987654 2457788899999999988773
No 253
>PTZ00357 methyltransferase; Provisional
Probab=97.67 E-value=0.00025 Score=71.01 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=79.8
Q ss_pred cceeeccCCCchHHHHHHHc----CC-CEEEEEecHH-HHHHHHHHH-HhcCC-------CCcEEEEEcCccccccCC--
Q psy8709 203 KHVIDVGAGTGILSIFAAQA----GA-AKVFAIEKSD-IAYETIDII-RKNKY-------DSQIEVYHKLLEDVELPV-- 266 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~----g~-~~V~gvD~s~-~i~~a~~~~-~~~g~-------~~~i~~i~~d~~~~~~~~-- 266 (319)
..|+-+|+|-|-+-....+. +. -+|++||.++ .+.....+. +.... .++|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999876554442 32 3899999996 443333332 22222 346999999999885431
Q ss_pred ---------CceeEEEeccchhhhcchhhHHHHHHHHhcccCC----Cc-------EEEeecCcceeecccc
Q psy8709 267 ---------ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP----DG-------VVCPNRFTLSLCGAYA 318 (319)
Q Consensus 267 ---------~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkp----gG-------~li~~~~t~~~~~~~~ 318 (319)
+++|+|||+..+.|-.. +.-++.|..+.+.||+ +| +.||...|-|++|+++
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDN-ELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISS 852 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDN-ELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMS 852 (1072)
T ss_pred ccccccccccccceehHhhhcccccc-cCCHHHHHHHHHhhhhhccccccccCCcceecchhhhhhcccccc
Confidence 37999999987765333 3345677777777765 55 5899999999999874
No 254
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00027 Score=61.85 Aligned_cols=92 Identities=23% Similarity=0.256 Sum_probs=74.9
Q ss_pred cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF 280 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~ 280 (319)
.++.|+||--++++.++.+. ....+++.|+++ -++.|.+++.++++.+++++..+|....--++..+|+|+..+|+-.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG~ 97 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGGT 97 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcHH
Confidence 46999999999999999985 567999999999 9999999999999999999999998655444568999998887653
Q ss_pred hcchhhHHHHHHHHhcccC
Q psy8709 281 LLFETMIDSVIDARNRFLK 299 (319)
Q Consensus 281 l~~~~~~~~~l~~~~r~Lk 299 (319)
+ +..+|.+-.+.|+
T Consensus 98 l-----I~~ILee~~~~l~ 111 (226)
T COG2384 98 L-----IREILEEGKEKLK 111 (226)
T ss_pred H-----HHHHHHHhhhhhc
Confidence 3 4455555555554
No 255
>KOG4058|consensus
Probab=97.51 E-value=0.00065 Score=55.78 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=79.0
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE 267 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~ 267 (319)
-.+.+++.+...+..+.+|+|+|.|..-..+++.|...-+|+++++ .+..++-..-..|......|...|+-...+.+-
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3444566666677679999999999999999999877999999999 888887776677787888899989877776543
Q ss_pred ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
.+-+|+- -++....+-.++..-+..|..++-
T Consensus 140 ~~vviFg--------aes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 140 RNVVIFG--------AESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ceEEEee--------hHHHHhhhHHHHHhhCcCCCeEEE
Confidence 4444432 223344444445555666666663
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00086 Score=57.96 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=85.8
Q ss_pred HHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709 187 ESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED 261 (319)
Q Consensus 187 ~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~ 261 (319)
.++...+++- +++.++.+||=+|+.+|......+. .+.+.++|++.|+ ........+.+. +|+--+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 5566666554 4578889999999999999888888 4667899999999 777777766664 578888888865
Q ss_pred cc---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 262 VE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 262 ~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.. .-.+.+|+|+.+-. .....+-+..++...||+||.+++.
T Consensus 136 P~~Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cHHhhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 42 22468999997653 2244566788889999999977654
No 257
>KOG3201|consensus
Probab=97.47 E-value=0.00019 Score=59.79 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=81.7
Q ss_pred cHHHHHHHHhcccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCC--CcEEEEEcCc
Q psy8709 185 RTESYKSAILNNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYD--SQIEVYHKLL 259 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~--~~i~~i~~d~ 259 (319)
..+.+.-.++.......+..||++|.| +|..+..++. .+...|.-.|-+. .++..++....|... .++.++..+.
T Consensus 13 seeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~ 92 (201)
T KOG3201|consen 13 SEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLI 92 (201)
T ss_pred cHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHH
Confidence 345566667777777778899999999 6666666665 4667999999999 777777766655221 2333333222
Q ss_pred ccc--ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 260 EDV--ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 260 ~~~--~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
..- ......||+|++.-..+ ..+....+.+.++.+|+|.|..++..+
T Consensus 93 ~~aqsq~eq~tFDiIlaADClF---fdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 93 WGAQSQQEQHTFDIILAADCLF---FDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred hhhHHHHhhCcccEEEeccchh---HHHHHHHHHHHHHHHhCcccceeEecC
Confidence 221 12235899999865433 335567788889999999998765544
No 258
>KOG4589|consensus
Probab=97.45 E-value=0.00056 Score=58.36 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=66.1
Q ss_pred cCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEc-Ccccc--------ccCCC
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK-LLEDV--------ELPVE 267 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~-d~~~~--------~~~~~ 267 (319)
+.++.+|||+||..|.++..+.+. +.+.|.|||+-.. .. ...+.++.+ |+.+. .+|..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EP-PEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cC-CCCcccccccccCCHHHHHHHHHhCCCC
Confidence 456789999999999999998884 6779999999871 01 134555665 66543 25678
Q ss_pred ceeEEEeccchhh----h----cchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 268 SVDIIISEWMGYF----L----LFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 268 ~fD~Iis~~~~~~----l----~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
++|+|+|+..-.. . ...+....++.-....++|+|.++.-
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 9999999753221 1 11122334455556788999998853
No 259
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.45 E-value=0.00031 Score=63.62 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc----------------CCC-----------Cc
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN----------------KYD-----------SQ 251 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~----------------g~~-----------~~ 251 (319)
.++.++||||||.-......+..-+.+++..|.++ ..+..++-++.. |.. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 34679999999987665444444467899999998 666555544332 110 12
Q ss_pred E-EEEEcCccccc-cCC-----CceeEEEeccchhhh-cchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 252 I-EVYHKLLEDVE-LPV-----ESVDIIISEWMGYFL-LFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 252 i-~~i~~d~~~~~-~~~-----~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
| .++..|+...+ ++. ++||+|++....-.. ...+.....++++.++|||||.|++.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 36778887653 211 359999986644332 34567888999999999999999953
No 260
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.44 E-value=0.00057 Score=56.03 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=58.6
Q ss_pred EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc--CCCceeEEEeccchhhhcc-------hhhHHHHHHHHh
Q psy8709 226 KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL--PVESVDIIISEWMGYFLLF-------ETMIDSVIDARN 295 (319)
Q Consensus 226 ~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~--~~~~fD~Iis~~~~~~l~~-------~~~~~~~l~~~~ 295 (319)
+|+|+|+.+ +++.+++++++.++.++++++..+-+++.. +.+++|+++.|. +|.... .+.--..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 999999999999998899999999888752 334899999874 232111 122345678888
Q ss_pred cccCCCcEEEeecC
Q psy8709 296 RFLKPDGVVCPNRF 309 (319)
Q Consensus 296 r~LkpgG~li~~~~ 309 (319)
++|+|||++.+...
T Consensus 80 ~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 80 ELLKPGGIITIVVY 93 (140)
T ss_dssp HHEEEEEEEEEEE-
T ss_pred HhhccCCEEEEEEe
Confidence 99999999986543
No 261
>KOG2352|consensus
Probab=97.39 E-value=0.00063 Score=65.99 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=80.9
Q ss_pred ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc
Q psy8709 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL 282 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~ 282 (319)
++|-+|||.-.++..+-+.|...++.+|.|+ .+......... -..-..+...|+..+.+++++||+|+--+.++.+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999999999999999999 66555433321 22568899999999999999999999877665543
Q ss_pred ch-------hhHHHHHHHHhcccCCCcEEEeec
Q psy8709 283 FE-------TMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 283 ~~-------~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.. ......+.+++|+|+|||+++.-+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 22 124566889999999999976433
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.36 E-value=0.0006 Score=60.74 Aligned_cols=87 Identities=23% Similarity=0.219 Sum_probs=51.4
Q ss_pred HhcccccCCCc--ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HH---HHHHHHHHhcCCC-----CcEEEEEcCccc
Q psy8709 193 ILNNKSLFNNK--HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IA---YETIDIIRKNKYD-----SQIEVYHKLLED 261 (319)
Q Consensus 193 i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i---~~a~~~~~~~g~~-----~~i~~i~~d~~~ 261 (319)
+.....+.++. +|||.-+|-|.-+..++..|+ +|+++|-|+ +. ..+.++....... .+++++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 33334445543 899999999999999998876 899999999 43 3333444433221 489999999877
Q ss_pred c-ccCCCceeEEEeccchhh
Q psy8709 262 V-ELPVESVDIIISEWMGYF 280 (319)
Q Consensus 262 ~-~~~~~~fD~Iis~~~~~~ 280 (319)
+ ..+..+||+|..++|+..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCCCHSS--SEEEE--S---
T ss_pred HHhhcCCCCCEEEECCCCCC
Confidence 5 345689999999999754
No 263
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.32 E-value=0.0011 Score=61.61 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--- 263 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--- 263 (319)
+.+.+++.+...++..++|.-+|.|..+..+++. +..+|+|+|.++ +++.+++.+... ..+++++++++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 4555666677778889999999999999999985 447999999999 999998887654 368999999998763
Q ss_pred --cCCCceeEEEecc
Q psy8709 264 --LPVESVDIIISEW 276 (319)
Q Consensus 264 --~~~~~fD~Iis~~ 276 (319)
.+..++|.|+.+.
T Consensus 86 ~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 86 DELLVTKIDGILVDL 100 (305)
T ss_pred HhcCCCcccEEEEec
Confidence 2335799998763
No 264
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.31 E-value=0.00063 Score=63.59 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=47.7
Q ss_pred chhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 119 DAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 119 ~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
.+..+...+.-+.|.+.-...+..+....++++|||+|||+|.+.+.++..|+..|+|+|.+....
T Consensus 92 ~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml 157 (314)
T TIGR00452 92 PFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL 157 (314)
T ss_pred CcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 333444445444554444444555666788999999999999999988888988999999876543
No 265
>KOG1499|consensus
Probab=97.28 E-value=0.0002 Score=66.68 Aligned_cols=31 Identities=65% Similarity=1.001 Sum_probs=29.0
Q ss_pred EEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709 153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGTP 183 (319)
Q Consensus 153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~~ 183 (319)
||+|||||++++++|+.||++|+|++.....
T Consensus 65 lDVGcGtGILS~F~akAGA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 65 LDVGCGTGILSMFAAKAGARKVYAVEASSIA 95 (346)
T ss_pred EEcCCCccHHHHHHHHhCcceEEEEechHHH
Confidence 7999999999999999999999999987654
No 266
>KOG2899|consensus
Probab=97.22 E-value=0.00039 Score=61.64 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=41.3
Q ss_pred cCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRK 245 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~ 245 (319)
...+..+|||||..|.++..+++ .+...|.|+|+++ .++.|++.++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 44557999999999999999999 4788999999999 99999987754
No 267
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.20 E-value=0.00043 Score=53.95 Aligned_cols=39 Identities=33% Similarity=0.452 Sum_probs=32.7
Q ss_pred CCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~ 186 (319)
|+.+|||+|||+|.+++.+++ ....+++++|.++.....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~ 40 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI 40 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 578999999999999999997 577789999998654433
No 268
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.18 E-value=0.00038 Score=61.80 Aligned_cols=43 Identities=40% Similarity=0.543 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHH
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYK 190 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~ 190 (319)
+++.+|||+|||-|+++..+|+.| ..|+|+|++...+......
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~h 100 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLH 100 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHh
Confidence 799999999999999999999999 8999999987666654433
No 269
>KOG2671|consensus
Probab=97.17 E-value=0.00048 Score=63.90 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=81.9
Q ss_pred cccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHH-------HHHHHHHhcCCC-CcEEEEEcCccccccC
Q psy8709 195 NNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAY-------ETIDIIRKNKYD-SQIEVYHKLLEDVELP 265 (319)
Q Consensus 195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~-------~a~~~~~~~g~~-~~i~~i~~d~~~~~~~ 265 (319)
+.....+|+.|.|.-.|||.+...++..|+ .|+|.|++- ++. ....|+++.|.. .-+.++.+|..+-++.
T Consensus 202 N~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred hhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 334567789999999999999999999987 999999999 665 234566666643 3456788888876643
Q ss_pred -CCceeEEEeccchhhhcc------------------------------hhhHHHHHHHHhcccCCCcEEEe
Q psy8709 266 -VESVDIIISEWMGYFLLF------------------------------ETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 266 -~~~fD~Iis~~~~~~l~~------------------------------~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
...||.|+|++++..-.. ...+..+|.-..+.|..||++++
T Consensus 281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 468999999998532100 12345567777899999999884
No 270
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.16 E-value=0.00084 Score=59.87 Aligned_cols=46 Identities=35% Similarity=0.411 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
..++......++++++||+|||+|.++..+++.|+.+|+|+|++..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~ 109 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN 109 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH
Confidence 3344444445799999999999999999999999999999999853
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.12 E-value=0.0018 Score=62.07 Aligned_cols=102 Identities=23% Similarity=0.203 Sum_probs=76.8
Q ss_pred cceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCC-cEEEEEcCccccc-cCCCceeEEEeccc
Q psy8709 203 KHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDS-QIEVYHKLLEDVE-LPVESVDIIISEWM 277 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-~i~~i~~d~~~~~-~~~~~fD~Iis~~~ 277 (319)
-++||.=+|+|.=++..+.. +..+|+.-|+|+ .++..++|++.|++.+ ++++.+.|+..+- .....||+|=.++.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPf 130 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPF 130 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--S
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCC
Confidence 58999999999998887774 667999999999 9999999999999977 6999999987653 24578999998776
Q ss_pred hhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
+ .+..+|..+.+.++.||+|.++....
T Consensus 131 G-------Sp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 131 G-------SPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp S---------HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred C-------CccHhHHHHHHHhhcCCEEEEecccc
Confidence 4 34567788888999999999876544
No 272
>KOG2798|consensus
Probab=97.08 E-value=0.0022 Score=59.00 Aligned_cols=100 Identities=24% Similarity=0.212 Sum_probs=65.3
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC------------------------------
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS------------------------------ 250 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~------------------------------ 250 (319)
.-+||-.|||.|+++..++..|. .+-|-+.|- |+-...=.+..-...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999987 778889998 6533221121000001
Q ss_pred ---------cEEEEEcCcccccc---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 251 ---------QIEVYHKLLEDVEL---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 251 ---------~i~~i~~d~~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
....-.||+.+.-- ..+.||+|+.. +++....+.-..+..+.++|||||+.+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEE
Confidence 11112234333211 12469999965 345555778889999999999999877
No 273
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.05 E-value=0.0017 Score=55.75 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=78.3
Q ss_pred HhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHH-------HHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAY-------ETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~-------~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
++....+.++.+|+|+=.|.|.++..++.. +.+.|++.-..+... ......++.. ..|++.+..+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCCcccccC
Confidence 344567788999999999999999999884 334788876665211 1111122222 256666666666666
Q ss_pred cCCCceeEEEeccchhhhc----chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 264 LPVESVDIIISEWMGYFLL----FETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~----~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+.+..|+++.+...|-++ +.....++..++++.|||||++.+....
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 446788888765544432 3456788999999999999999866543
No 274
>KOG1500|consensus
Probab=97.01 E-value=0.00053 Score=63.43 Aligned_cols=37 Identities=57% Similarity=0.812 Sum_probs=31.6
Q ss_pred EEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHH
Q psy8709 153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY 189 (319)
Q Consensus 153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~ 189 (319)
+|+|||+|+++++|++.|+++||+++.+......+.+
T Consensus 182 lDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~L 218 (517)
T KOG1500|consen 182 LDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKL 218 (517)
T ss_pred EEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHH
Confidence 6999999999999999999999999988655544443
No 275
>KOG2198|consensus
Probab=96.93 E-value=0.0049 Score=57.96 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=78.1
Q ss_pred cccCCCcceeeccCCCchHHHHHHHcCC-----CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-------
Q psy8709 197 KSLFNNKHVIDVGAGTGILSIFAAQAGA-----AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE------- 263 (319)
Q Consensus 197 l~~~~~~~VLDiGcGtG~ls~~la~~g~-----~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------- 263 (319)
++..++.+|||+.+..|.-+..+.+... ..|++-|.++ -+......+.... ..++.+...++...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccC
Confidence 5677889999999999999988877421 2799999998 6666555553322 245555555543332
Q ss_pred --cCCCceeEEEeccchhh--h-c-----------------chhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 264 --LPVESVDIIISEWMGYF--L-L-----------------FETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 264 --~~~~~fD~Iis~~~~~~--l-~-----------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
.....||-|+++.+... . . -....-.++.+..++||+||.++.++|++.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 12357999998754321 0 0 011234578888899999999999999975
No 276
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.92 E-value=0.034 Score=47.70 Aligned_cols=56 Identities=43% Similarity=0.522 Sum_probs=41.4
Q ss_pred hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709 125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR 185 (319)
Q Consensus 125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~ 185 (319)
.++++.+|...... ....++.+|||+|||+|.+++.+++.+ ..+++++|.++....
T Consensus 13 ~~~~~~~r~~~~~~-----l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~ 69 (187)
T PRK08287 13 PMTKEEVRALALSK-----LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALR 69 (187)
T ss_pred CCchHHHHHHHHHh-----cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 46666666433322 345688899999999999999988654 679999999875443
No 277
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.91 E-value=0.0017 Score=55.93 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=31.8
Q ss_pred CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI 184 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~ 184 (319)
.++++|||+|||+|.+++.++..+ ..+|+++|.+....
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~ 79 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV 79 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH
Confidence 358999999999999999988655 67899999986544
No 278
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.90 E-value=0.016 Score=51.69 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=68.3
Q ss_pred ecCCCcccHHHHHHHHh--cccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE
Q psy8709 178 EKSGTPIRTESYKSAIL--NNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE 253 (319)
Q Consensus 178 d~d~~~~~~~~~~~~i~--~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~ 253 (319)
++|....+.+....++. ..-....|++||-+|=+.- .|+.++- ...++|+.+|+++ +++...+.+++.|+ +++
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~ 95 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIE 95 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EE
T ss_pred ccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceE
Confidence 34444444444433332 2233456789999985543 2333333 3456999999999 99999999999998 499
Q ss_pred EEEcCccccccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCc-EEEeecC
Q psy8709 254 VYHKLLEDVELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG-VVCPNRF 309 (319)
Q Consensus 254 ~i~~d~~~~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG-~li~~~~ 309 (319)
.++.|+.+. +| .++||+++++++. ..+.+.-++......||..| ..++...
T Consensus 96 ~~~~DlR~~-LP~~~~~~fD~f~TDPPy----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 96 AVHYDLRDP-LPEELRGKFDVFFTDPPY----TPEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp EE---TTS----TTTSS-BSEEEE---S----SHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred EEEeccccc-CCHHHhcCCCEEEeCCCC----CHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 999999874 33 3799999999984 23667888888888998755 5454433
No 279
>PHA01634 hypothetical protein
Probab=96.85 E-value=0.0039 Score=49.98 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
++++|+|||++-|.-++.++-.|+++|+++++++ ..+..+++++.+..-++..- .++ .+-.-+.||+.+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~-~~e---W~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM-KGE---WNGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceee-ccc---ccccCCCcceEEEE
Confidence 4689999999999999999999999999999999 88888888877644332221 112 22123567777643
No 280
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.85 E-value=0.0011 Score=61.21 Aligned_cols=41 Identities=46% Similarity=0.669 Sum_probs=35.8
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
..++++|||+|||+|.+++.+++.|+.+++++|+++.....
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 34789999999999999999999999999999999765544
No 281
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.85 E-value=0.0019 Score=60.73 Aligned_cols=44 Identities=32% Similarity=0.364 Sum_probs=36.4
Q ss_pred HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
.......++++|||+|||+|.+++.++..|+..|+|+|.+....
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l 158 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL 158 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 33445578999999999999999999988988999999775443
No 282
>KOG1270|consensus
Probab=96.81 E-value=0.0019 Score=58.07 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=36.3
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYK 190 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~ 190 (319)
.+.|+.|||+|||+|+++...|+.| +.|.|+|..+..+...+..
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHh
Confidence 3445899999999999999999999 7899999987666655444
No 283
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.76 E-value=0.0022 Score=59.06 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=42.3
Q ss_pred HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHh
Q psy8709 141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAIL 194 (319)
Q Consensus 141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~ 194 (319)
..+...+.|++|||+|||+|..++.++..||+.|.|+|-+......-...+.++
T Consensus 108 ~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l 161 (315)
T PF08003_consen 108 LPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL 161 (315)
T ss_pred HhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh
Confidence 344456899999999999999999999999999999998766555533333333
No 284
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.76 E-value=0.0013 Score=59.42 Aligned_cols=41 Identities=41% Similarity=0.690 Sum_probs=35.6
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
..++++|||+|||+|.+++.+++.|+.+++++|+++.....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~ 157 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA 157 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 45789999999999999999999998889999998765544
No 285
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.74 E-value=0.054 Score=46.88 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=34.4
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR 185 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~ 185 (319)
....++.+|||+|||+|.+++.+++. ...+++++|.++....
T Consensus 36 l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~ 78 (196)
T PRK07402 36 LRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVN 78 (196)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 45568899999999999999988855 4689999999865544
No 286
>KOG3987|consensus
Probab=96.73 E-value=0.00061 Score=59.05 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=62.7
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l 281 (319)
.++||+|+|.|..+..++.. ..+|++.+.|. |..+. +..+. ++ +. ..+..-.+-+||+|.|-.. +
T Consensus 114 ~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL----~kk~y--nV--l~--~~ew~~t~~k~dli~clNl---L 179 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRL----KKKNY--NV--LT--EIEWLQTDVKLDLILCLNL---L 179 (288)
T ss_pred eeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHH----hhcCC--ce--ee--ehhhhhcCceeehHHHHHH---H
Confidence 68999999999999888876 45899999999 65544 34433 22 11 1111112347999997333 2
Q ss_pred cchhhHHHHHHHHhcccCC-CcEEEeec
Q psy8709 282 LFETMIDSVIDARNRFLKP-DGVVCPNR 308 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~Lkp-gG~li~~~ 308 (319)
..-.++-++|+.++.+|+| +|.+++.-
T Consensus 180 DRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 2234567889999999999 89887543
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.71 E-value=0.0019 Score=63.05 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=65.6
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL 281 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l 281 (319)
.+|+|..+|.|.++..+.+.+. ...-.-+ .-.-....+-..|+ |-..+.=.+.++.-...||+|.++.++...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V---WVMNVVP~~~~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV---WVMNVVPVSGPNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred eeeeeecccccHHHHHhccCCc---eEEEecccCCCCcchhhhhccc---chhccchhhccCCCCcchhheehhhhhhhh
Confidence 5899999999999999988753 2222222 11112233444554 222222223333333899999998766555
Q ss_pred cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 282 LFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
...-.+..++-++.|+|+|||.+++...
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEecc
Confidence 5555688999999999999999998543
No 288
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.70 E-value=0.013 Score=58.19 Aligned_cols=122 Identities=12% Similarity=-0.004 Sum_probs=86.9
Q ss_pred cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE
Q psy8709 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G----AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH 256 (319)
Q Consensus 183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~ 256 (319)
-.+...+.+.+...+...+..+|.|..||+|.+.....+. + ...++|.|+++ ....|+-++--+|....+....
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3455777788888877767779999999999887766653 1 25799999999 8888888888888743456666
Q ss_pred cCccccccC-----CCceeEEEeccchh---hhc------------------c-hhhHHHHHHHHhcccCCCcEE
Q psy8709 257 KLLEDVELP-----VESVDIIISEWMGY---FLL------------------F-ETMIDSVIDARNRFLKPDGVV 304 (319)
Q Consensus 257 ~d~~~~~~~-----~~~fD~Iis~~~~~---~l~------------------~-~~~~~~~l~~~~r~LkpgG~l 304 (319)
+|...-+.. .+.||.|++|+++. |.. . ......++..+...|+|||+.
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~a 322 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRA 322 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceE
Confidence 665443322 36799999999875 110 0 112266788888999998743
No 289
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.65 E-value=0.014 Score=52.34 Aligned_cols=120 Identities=17% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
-+.+.+.++...+. ..+|+|+|||.--++...... +...++|+|++. +++.....+...+. +..+...|...-+
T Consensus 92 Ld~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH
T ss_pred HHHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC
Confidence 46777777775433 579999999999888876664 345999999999 99999888888776 5566666776543
Q ss_pred cCCCceeEEEeccchhhhcchh--hHHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709 264 LPVESVDIIISEWMGYFLLFET--MIDSVIDARNRFLKPDGVVCPNRFTLSLCG 315 (319)
Q Consensus 264 ~~~~~fD~Iis~~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~t~~~~~ 315 (319)
+....|+.+.--+.+.+.... .-..+++++. . =.++++.++-.+.+
T Consensus 168 -~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~---~--~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCLERQRRGAGLELLDALR---S--PHVVVSFPTRSLGG 215 (251)
T ss_dssp -TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC---E--SEEEEEEES-----
T ss_pred -CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC---C--CeEEEecccccccc
Confidence 447899998644444442211 1122333322 1 25666766665543
No 290
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.61 E-value=0.0048 Score=53.63 Aligned_cols=56 Identities=29% Similarity=0.519 Sum_probs=44.5
Q ss_pred hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCccc
Q psy8709 125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIR 185 (319)
Q Consensus 125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~ 185 (319)
.|++.++|...... ..+.++.++||+|||+|.+++.+++. + ..+++++|.++....
T Consensus 22 ~~t~~~~r~~~l~~-----l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~ 79 (198)
T PRK00377 22 PMTKEEIRALALSK-----LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAIN 79 (198)
T ss_pred CCCHHHHHHHHHHH-----cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 57877887666544 56789999999999999999999854 4 578999999865544
No 291
>KOG1227|consensus
Probab=96.56 E-value=0.0013 Score=60.12 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=62.5
Q ss_pred CcceeeccCCCchHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709 202 NKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE 275 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~-~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~ 275 (319)
+..|+|+-+|.|+++. ++..+|++.|+++|.+| .++..+++++.|+..++..++.+|-.... +....|.|...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnLG 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNLG 269 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheeec
Confidence 4799999999999999 88889999999999999 99999999999988777788888877654 34678888743
No 292
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.008 Score=52.55 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCcceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-------c-CC
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-------L-PV 266 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-------~-~~ 266 (319)
+...|+|+|.-.|.-+.+.|.. +.++|+|+|+.- . ..++....+.+.++|++++||..+.. . ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 3479999999999887776652 457999999954 1 11222334555689999999987652 1 12
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
....+|+-+..+.+ ......|+....++++|+++++...
T Consensus 110 ~~~vlVilDs~H~~----~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVILDSSHTH----EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEEECCCccH----HHHHHHHHHhCccCCCCCEEEEEec
Confidence 34557776554221 3345566778899999999986544
No 293
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.55 E-value=0.0013 Score=56.70 Aligned_cols=49 Identities=35% Similarity=0.478 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
....+.+..++....+|+|||+|+|+|+.++.+++.|++.+.+.|+++.
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~ 113 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW 113 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChH
Confidence 3445677789999999999999999999999999999999999999843
No 294
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.53 E-value=0.0065 Score=57.06 Aligned_cols=40 Identities=30% Similarity=0.499 Sum_probs=32.4
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.+++.+|||+|||+|.++...++.| ..|+|+|.+......
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~ 168 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKI 168 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHH
Confidence 3578899999999999999888765 579999998654433
No 295
>KOG3420|consensus
Probab=96.52 E-value=0.002 Score=52.93 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
...-|+.....++|+.++|+|||.|.+++..+.+++..+.|+|+++.+...
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEI 86 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEI 86 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHH
Confidence 344566677789999999999999999998999999999999999865443
No 296
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.52 E-value=0.0061 Score=51.70 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCc-eEEeeecCCCcccH
Q psy8709 133 TESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAA-KVFAIEKSGTPIRT 186 (319)
Q Consensus 133 ~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~-~V~avd~d~~~~~~ 186 (319)
+......+..+ +++++||+|||+|.+++.+++.++. +++++|++......
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~ 70 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALEL 70 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHH
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence 33444444443 7789999999999999999987755 89999998654443
No 297
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.49 E-value=0.0062 Score=53.69 Aligned_cols=39 Identities=41% Similarity=0.568 Sum_probs=32.4
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
..+++++||+|||+|.++...+..+ ..++|+|+++....
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~ 91 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQ 91 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHH
Confidence 5678999999999999999888765 48999999865443
No 298
>KOG1596|consensus
Probab=96.44 E-value=0.011 Score=52.53 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=73.4
Q ss_pred cccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCc
Q psy8709 195 NNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVES 268 (319)
Q Consensus 195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~ 268 (319)
+++.+.++.+||=+|+++|..-...... +..-|++++.|+ .-......+++. .||.-+..|+.... ....-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence 4567889999999999999887777773 345899999999 433333333322 57777777876532 22357
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~ 309 (319)
+|+|+++..- .....-+.-++...||+||.++++..
T Consensus 227 VDvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 227 VDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EEEEeccCCC-----chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 9999987541 12333444567789999999997643
No 299
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.40 E-value=0.028 Score=43.81 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=25.8
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHH
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD 234 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~ 234 (319)
...+|+|||+|.+...+.+.|. .-.|+|.-.
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 5789999999999998888877 677888755
No 300
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.34 E-value=0.022 Score=53.87 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=62.5
Q ss_pred cCCCcceeeccCCCchHHHHHHHc----------CC-------CEEEEEecHH--H---HHHHHH---HHHhcCCCCcEE
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA----------GA-------AKVFAIEKSD--I---AYETID---IIRKNKYDSQIE 253 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~----------g~-------~~V~gvD~s~--~---i~~a~~---~~~~~g~~~~i~ 253 (319)
..+.-+|+|+||.+|..++.+... .. -.|+--|+.. . ....-. .... ...--+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEE
Confidence 334469999999999888755431 01 1667777543 1 111111 1111 1111233
Q ss_pred EEEcCccccccCCCceeEEEeccchhhhcc------------------------------------hhhHHHHHHHHhcc
Q psy8709 254 VYHKLLEDVELPVESVDIIISEWMGYFLLF------------------------------------ETMIDSVIDARNRF 297 (319)
Q Consensus 254 ~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~------------------------------------~~~~~~~l~~~~r~ 297 (319)
-+.+.+..--+|.++.|+++|....||+.. ..++..+|+...+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 455677666688899999999998898732 13467788999999
Q ss_pred cCCCcEEEeecC
Q psy8709 298 LKPDGVVCPNRF 309 (319)
Q Consensus 298 LkpgG~li~~~~ 309 (319)
|+|||++++...
T Consensus 173 Lv~GG~mvl~~~ 184 (334)
T PF03492_consen 173 LVPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEEE
T ss_pred eccCcEEEEEEe
Confidence 999999996643
No 301
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.32 E-value=0.035 Score=47.28 Aligned_cols=84 Identities=30% Similarity=0.318 Sum_probs=47.5
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccHHHHHHHHhcccc---cCCCcceeeccCCCchHHHH
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRTESYKSAILNNKS---LFNNKHVIDVGAGTGILSIF 218 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~~~~~~~i~~~l~---~~~~~~VLDiGcGtG~ls~~ 218 (319)
+...+.+++||++|||+|+.++.++.. ++.+|+..|.++ ..+.+...+..+.. ..-.-..||.|-. ....
T Consensus 40 ~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~---~~~~ 113 (173)
T PF10294_consen 40 NPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---VLELLRRNIELNGSLLDGRVSVRPLDWGDE---LDSD 113 (173)
T ss_dssp -GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----HHHHHHHHHHTT--------EEEE--TTS----HHHH
T ss_pred chhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---hhHHHHHHHHhccccccccccCcEEEecCc---cccc
Confidence 466889999999999999999999988 899999999876 33344444433321 1111245666542 1122
Q ss_pred HHH-cCCCEEEEEec
Q psy8709 219 AAQ-AGAAKVFAIEK 232 (319)
Q Consensus 219 la~-~g~~~V~gvD~ 232 (319)
... ..+.-|+|.|.
T Consensus 114 ~~~~~~~D~IlasDv 128 (173)
T PF10294_consen 114 LLEPHSFDVILASDV 128 (173)
T ss_dssp HHS-SSBSEEEEES-
T ss_pred ccccccCCEEEEecc
Confidence 222 34567888875
No 302
>KOG3115|consensus
Probab=96.31 E-value=0.011 Score=51.16 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=64.1
Q ss_pred cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC------CCCcEEEEEcCccccc---cCCCceeE
Q psy8709 203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK------YDSQIEVYHKLLEDVE---LPVESVDI 271 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g------~~~~i~~i~~d~~~~~---~~~~~fD~ 271 (319)
-.+.|||||.|.+.+.++.. +...+.|.++-. .-+..+++++..+ ...++.+...+..... +..++..-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 47899999999999999985 667899999988 7777766665443 2356667666654331 11122222
Q ss_pred EEeccchhhhcch-----hhHHHHHHHHhcccCCCcEEEeec
Q psy8709 272 IISEWMGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 272 Iis~~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.+...+-.++... -.-..++.+..-+|++||.++..+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2211111111000 012355677778999999998543
No 303
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.28 E-value=0.0057 Score=52.99 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=35.4
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
..+++++||++||||.++++++..|+++++++|.+.....
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~ 86 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQ 86 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 3578999999999999999999999999999999865443
No 304
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.26 E-value=0.012 Score=50.83 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=32.3
Q ss_pred CCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~ 186 (319)
++.+|||+|||+|.+++..++ ....+|+++|.+......
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~ 84 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAF 84 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHH
Confidence 489999999999999998875 557899999998654443
No 305
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.24 E-value=0.0051 Score=48.21 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=32.2
Q ss_pred CCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 149 ~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
|.+|||+|||+|.+.+.+++.++.+++++|+++....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~ 37 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVE 37 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHH
Confidence 4689999999999999999888999999999865433
No 306
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.01 Score=55.46 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=66.0
Q ss_pred ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc--ccC-CCceeEE
Q psy8709 198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV--ELP-VESVDII 272 (319)
Q Consensus 198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~-~~~fD~I 272 (319)
+....+++||+|.|.|.-...+-.. + ...++-++.|+.+......+..+-..........|+..- ++| ...|+++
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence 4455678999999988766555442 2 347788888996666665555553333333333343322 222 3567777
Q ss_pred Eeccchhhhcc---hhhHHHHHHHHhcccCCCcEEEee
Q psy8709 273 ISEWMGYFLLF---ETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 273 is~~~~~~l~~---~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
+ +.+-+.+ +..+...++.++.++.|||.|++-
T Consensus 190 i---~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 190 I---VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred h---hhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 7 4443433 333455788999999999998843
No 307
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.21 E-value=0.005 Score=53.47 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
...++.+|||+|||+|..++.+++.| ..|+++|+++....
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~ 66 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIA 66 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHH
Confidence 34567899999999999999999876 58999999864443
No 308
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.11 E-value=0.01 Score=54.38 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=34.4
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
....++.+|||+|||+|.++..+++.++ +++++|+++....
T Consensus 38 l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~ 78 (272)
T PRK00274 38 AGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAP 78 (272)
T ss_pred cCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHH
Confidence 3566889999999999999999998776 8999999975433
No 309
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.06 E-value=0.033 Score=51.22 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
..+.+.++..+...++...+|.--|.|..+..+.+.. .++++|+|.++ +++.|++.+...+ ++++++++++.++.
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~ 86 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLA 86 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHH
Confidence 3456677778888888999999999999999998853 46899999999 9999999988765 69999999987763
Q ss_pred -----cCCCceeEEEec
Q psy8709 264 -----LPVESVDIIISE 275 (319)
Q Consensus 264 -----~~~~~fD~Iis~ 275 (319)
...+++|.|+.+
T Consensus 87 ~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 87 EALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHhcCCCceeEEEEe
Confidence 234578888764
No 310
>KOG1253|consensus
Probab=96.04 E-value=0.0044 Score=60.21 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=86.6
Q ss_pred CCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----cCCCceeEEE
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----LPVESVDIII 273 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----~~~~~fD~Ii 273 (319)
++-+|||.=|++|.-++..++. +...|++-|.++ .++..+++++.|+..+.++..+.|+..+- .....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4468999999999999988883 677999999999 99999999999988888888888886542 2247899999
Q ss_pred eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
.++.+ ....+|..+.+.++.||+++++...+..
T Consensus 189 LDPyG-------s~s~FLDsAvqav~~gGLL~vT~TD~aV 221 (525)
T KOG1253|consen 189 LDPYG-------SPSPFLDSAVQAVRDGGLLCVTCTDMAV 221 (525)
T ss_pred cCCCC-------CccHHHHHHHHHhhcCCEEEEEecchHh
Confidence 77654 3356788888899999999998877653
No 311
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.99 E-value=0.011 Score=48.99 Aligned_cols=39 Identities=36% Similarity=0.535 Sum_probs=31.8
Q ss_pred CCCeEEEecCCCChhhHHHH-hcC-CceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAA-QAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa-~~g-a~~V~avd~d~~~~~~ 186 (319)
++.+|||+|||+|.++...+ ..+ ..+++++|+++.....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~ 43 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEY 43 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHH
Confidence 57899999999999999999 554 7889999998665554
No 312
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.97 E-value=0.02 Score=44.94 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI 184 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~ 184 (319)
..+.++.+++|+|||+|.++..+++. +..+++++|.+....
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~ 56 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL 56 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH
Confidence 34556789999999999999998864 568999999875443
No 313
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.97 E-value=0.14 Score=44.95 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=73.1
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH---cCCCEEEEEecHH-HHHHHHHHHHh-----------------
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ---AGAAKVFAIEKSD-IAYETIDIIRK----------------- 245 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~---~g~~~V~gvD~s~-~i~~a~~~~~~----------------- 245 (319)
.++.+..+..+....+-++-|..||.|++...+.- .....|+|-|+++ +++.|++|+..
T Consensus 37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 56666777666666667999999999988765443 2356899999999 99999888631
Q ss_pred ------------------------cCCCCcEEEEEcCccccc----c-CCCceeEEEeccch----hhhc--chhhHHHH
Q psy8709 246 ------------------------NKYDSQIEVYHKLLEDVE----L-PVESVDIIISEWMG----YFLL--FETMIDSV 290 (319)
Q Consensus 246 ------------------------~g~~~~i~~i~~d~~~~~----~-~~~~fD~Iis~~~~----~~l~--~~~~~~~~ 290 (319)
.|-.....+...|+.+.. . .....|+|+.+.++ .|-. ..+....+
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m 196 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM 196 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence 122234667777877632 1 12346999987643 3433 33457889
Q ss_pred HHHHhcccCCCcEEEee
Q psy8709 291 IDARNRFLKPDGVVCPN 307 (319)
Q Consensus 291 l~~~~r~LkpgG~li~~ 307 (319)
|..++.+|-+++++.++
T Consensus 197 l~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 197 LNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHCCS-TT-EEEEE
T ss_pred HHHHHhhCCCCcEEEEe
Confidence 99999999667777663
No 314
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.95 E-value=0.015 Score=53.98 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=60.7
Q ss_pred HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---
Q psy8709 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--- 263 (319)
Q Consensus 189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--- 263 (319)
+.+.+++.+...++...+|.--|.|..+..+++. +..+++|+|.++ +++.+.+++... .+++.++++++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHH
Confidence 3455566666778889999999999999999984 558999999999 888887766543 479999999998763
Q ss_pred --c-CCCceeEEEecc
Q psy8709 264 --L-PVESVDIIISEW 276 (319)
Q Consensus 264 --~-~~~~fD~Iis~~ 276 (319)
. ...++|.|+.+.
T Consensus 86 ~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 86 KELNGINKVDGILFDL 101 (310)
T ss_dssp HHTTTTS-EEEEEEE-
T ss_pred HHccCCCccCEEEEcc
Confidence 2 345899999753
No 315
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.93 E-value=0.014 Score=49.32 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=33.2
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
.....++.++||+|||+|.++..++.. +.+++++|++..
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~ 46 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPR 46 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHH
Confidence 345667889999999999999999977 578999999854
No 316
>KOG1099|consensus
Probab=95.89 E-value=0.014 Score=51.60 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=65.3
Q ss_pred cceeeccCCCchHHHHHHHc--C------C--CEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------c
Q psy8709 203 KHVIDVGAGTGILSIFAAQA--G------A--AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------L 264 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~--g------~--~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~ 264 (319)
++++|+.+..|.++..+.+. . . .++++||+.+|. .+ +.|.-+++|+.... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------PI-~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------PI-EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------cc-CceEEeecccCCHhHHHHHHHHh
Confidence 68999999999999988874 1 1 139999999942 22 46778889987652 4
Q ss_pred CCCceeEEEeccchhh--hc--ch----hhHHHHHHHHhcccCCCcEEE
Q psy8709 265 PVESVDIIISEWMGYF--LL--FE----TMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 265 ~~~~fD~Iis~~~~~~--l~--~~----~~~~~~l~~~~r~LkpgG~li 305 (319)
..++.|+|+|+..-.. ++ .+ +.+...|.-...+|||||.|+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 5579999999763211 11 11 224455667779999999998
No 317
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.85 E-value=0.018 Score=52.35 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=36.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
..+.......++++|||+|||+|.++...++. +.+++++|++....
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~ 64 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLA 64 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHH
Confidence 34444456678999999999999999999977 46899999986443
No 318
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.83 E-value=0.0067 Score=47.45 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=32.9
Q ss_pred ceeEEEeccchhhhc---chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 268 SVDIIISEWMGYFLL---FETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~---~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
+||+|+|-.+..|++ +++.+..+++.+++.|+|||.|+++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 499999988777764 4566899999999999999999977543
No 319
>PRK14967 putative methyltransferase; Provisional
Probab=95.81 E-value=0.017 Score=51.14 Aligned_cols=41 Identities=37% Similarity=0.538 Sum_probs=35.1
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
...++.+|||+|||+|.+++.+++.++.+++++|+++....
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~ 73 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVR 73 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHH
Confidence 35678899999999999999999888779999999875544
No 320
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.79 E-value=0.055 Score=51.89 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=40.7
Q ss_pred EcCccccccCCCceeEEEeccchhhhcc-----------------------------------hhhHHHHHHHHhcccCC
Q psy8709 256 HKLLEDVELPVESVDIIISEWMGYFLLF-----------------------------------ETMIDSVIDARNRFLKP 300 (319)
Q Consensus 256 ~~d~~~~~~~~~~fD~Iis~~~~~~l~~-----------------------------------~~~~~~~l~~~~r~Lkp 300 (319)
.|.+..--+|.++.++++|....||+.. ..+...+|+...+-|.|
T Consensus 150 pGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvp 229 (386)
T PLN02668 150 PGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKR 229 (386)
T ss_pred CccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555578899999999999898752 01356778888999999
Q ss_pred CcEEEeec
Q psy8709 301 DGVVCPNR 308 (319)
Q Consensus 301 gG~li~~~ 308 (319)
||.+++..
T Consensus 230 GG~mvl~~ 237 (386)
T PLN02668 230 GGAMFLVC 237 (386)
T ss_pred CcEEEEEE
Confidence 99999765
No 321
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.77 E-value=0.024 Score=50.12 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCcceeeccCCCchH-HHH-HHHcCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEEcCcccccc-----CCCceeE
Q psy8709 201 NNKHVIDVGAGTGIL-SIF-AAQAGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYHKLLEDVEL-----PVESVDI 271 (319)
Q Consensus 201 ~~~~VLDiGcGtG~l-s~~-la~~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~~d~~~~~~-----~~~~fD~ 271 (319)
++-++||||.|.-.. .+. ....|. +.+|.|+++ .+..|..++..| ++...+++....-.+--+ ..+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 345789999885432 111 222455 899999999 999999999888 776777776544332222 2578999
Q ss_pred EEeccchhh
Q psy8709 272 IISEWMGYF 280 (319)
Q Consensus 272 Iis~~~~~~ 280 (319)
..||+++|-
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999999874
No 322
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.74 E-value=0.01 Score=50.58 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=33.6
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
..+++++||+|||+|.++..++..+. +++++|+++.....
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~ 56 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE 56 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 45678899999999999999998877 99999998655443
No 323
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.69 E-value=0.02 Score=50.06 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCC
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAA 225 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~ 225 (319)
.++.++||+|||+|.+++.+...++.+|+++|.++....... +.+ +..... + +.+=+|.- ...+.. ...-
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~--~Nl-~~~~~~---~-v~~~~~D~--~~~l~~~~~~f 122 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI--KNL-ATLKAG---N-ARVVNTNA--LSFLAQPGTPH 122 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH--HHH-HHhCCC---c-EEEEEchH--HHHHhhcCCCc
Confidence 467899999999999999876667889999999855433321 111 111111 1 22223332 222222 1223
Q ss_pred EEEEEecH--H-HHHHHHHHHHhcCC--CCcEEEEE
Q psy8709 226 KVFAIEKS--D-IAYETIDIIRKNKY--DSQIEVYH 256 (319)
Q Consensus 226 ~V~gvD~s--~-~i~~a~~~~~~~g~--~~~i~~i~ 256 (319)
.++-+|+. . +.+.+.+.+...++ .+.+-++.
T Consensus 123 DlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 123 NVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred eEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 78888877 4 66677777766543 24444444
No 324
>KOG2187|consensus
Probab=95.69 E-value=0.022 Score=55.75 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhccc--ccCCC------cceee
Q psy8709 136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNK--SLFNN------KHVID 207 (319)
Q Consensus 136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l--~~~~~------~~VLD 207 (319)
+...+..+..+-.++.++|+-||||.+++..++ ++.+|+|+++++..+...+++..+-... ....| ..+++
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~ 449 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT 449 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcc
Confidence 445666777888899999999999999997774 6789999999998888877776654332 11111 23344
Q ss_pred ccCCCchHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709 208 VGAGTGILSIFAAQAGAAKVFAIEKSD--IAYETIDIIRKNKYDSQIEVYHKLLE 260 (319)
Q Consensus 208 iGcGtG~ls~~la~~g~~~V~gvD~s~--~i~~a~~~~~~~g~~~~i~~i~~d~~ 260 (319)
.-|+++. -+.-+|++. +-....+.+.......++.++.++..
T Consensus 450 ~~~~~~~-----------~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 450 PCCDSET-----------LVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred cCCCCCc-----------eEEEECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 4444332 366677776 44444454544443356666655543
No 325
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.68 E-value=0.019 Score=52.64 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=38.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
+.+....++.+|+++||+|||-|.+.+.+|+.=.-+|+|++++..
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~ 106 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEE 106 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHH
Confidence 345567789999999999999999999999766788999998754
No 326
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.035 Score=52.39 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=78.5
Q ss_pred CcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccch
Q psy8709 202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMG 278 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~ 278 (319)
..+|+|.=+|+|.=++..+.. +..+|+.-|+|| ..+.+++|++.|.. .+...++.|+..+-.. ...||+|=.++.+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCCCC
Confidence 479999999999999888874 555999999999 99999999998833 4566667777655322 2689999877654
Q ss_pred hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
.+..++..+.+.++.||++.++....
T Consensus 132 -------SPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 132 -------SPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred -------CCchHHHHHHHHhhcCCEEEEEeccc
Confidence 23456677777888899999876554
No 327
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.65 E-value=0.026 Score=49.97 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=33.3
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcc
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPI 184 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~ 184 (319)
.....++++|||+|||+|.++..+++ .+ ...++++|+++...
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 34566789999999999999988874 44 56999999976443
No 328
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.62 E-value=0.028 Score=50.40 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709 135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~ 186 (319)
.|++.........+|.+|||++||||-+++..+ ..|..+|+++|++......
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHH
Confidence 344444444445599999999999999999988 5569999999998655444
No 329
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.62 E-value=0.017 Score=55.34 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=32.2
Q ss_pred CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
.+.+|||+|||+|.+++.+++.. ..+++++|.+......
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~ 267 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS 267 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 35699999999999999998665 7799999998655444
No 330
>KOG1562|consensus
Probab=95.59 E-value=0.036 Score=50.81 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=80.2
Q ss_pred cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--CC-CCcEEEEEcCcccc--ccCCCceeE
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--KY-DSQIEVYHKLLEDV--ELPVESVDI 271 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g~-~~~i~~i~~d~~~~--~~~~~~fD~ 271 (319)
..+.++||-||.|.|...+..+++ ...++.-+|+.. .++..++....- |+ .+++.++-||...+ ..+.++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 344579999999999988887775 356888999999 777777665432 33 36888999987654 244689999
Q ss_pred EEeccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709 272 IISEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLSL 313 (319)
Q Consensus 272 Iis~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~~ 313 (319)
|+.+..-...... --.+.++.-+.+.||+||+++...-.+|+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl 241 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL 241 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence 9975421111111 12456778888999999999977665554
No 331
>PRK04266 fibrillarin; Provisional
Probab=95.58 E-value=0.018 Score=51.28 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=34.4
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCc
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTP 183 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~ 183 (319)
...+.++.+|||+|||+|.++..++.. +...|+++|+++..
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~m 108 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRP 108 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHH
Confidence 456789999999999999999998854 45789999998643
No 332
>KOG2793|consensus
Probab=95.53 E-value=0.059 Score=48.53 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=62.1
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHH-----hcCCCCcEEEEEcCcccc---ccCCCc-eeEE
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIR-----KNKYDSQIEVYHKLLEDV---ELPVES-VDII 272 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~-----~~g~~~~i~~i~~d~~~~---~~~~~~-fD~I 272 (319)
..+||++|+|+|..++.++.....+|...|....+.....+.. .+++...+.+..-+..+. .+-.+. ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4679999999998888888865669999998883333333322 222222444433333222 111233 9999
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+..-+.|.. +..+.++..+..+|..+|.+++
T Consensus 167 lasDvvy~~---~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 167 LASDVVYEE---ESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred EEeeeeecC---CcchhHHHHHHHHHhcCCeEEE
Confidence 976655443 4455566666777888885544
No 333
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.53 E-value=0.033 Score=51.10 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=52.1
Q ss_pred ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--CCceeEEEeccchhh
Q psy8709 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--VESVDIIISEWMGYF 280 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--~~~fD~Iis~~~~~~ 280 (319)
+++|+.||.|.++.-+.+.|...+.++|+++ .++..+.+.. . .++.+|+.++... ...+|+++..++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 6899999999999999999988899999999 5444333321 1 1567788776532 357999998876553
No 334
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.52 E-value=0.03 Score=46.08 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=31.6
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
..++++|||+|||+|.+....++.|. +++++|+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~ 55 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQ 55 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHH
Confidence 56889999999999999988888877 8999999753
No 335
>KOG2920|consensus
Probab=95.51 E-value=0.011 Score=53.72 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=37.7
Q ss_pred hhhhhhchhHHHHHHHHHHHhc---CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecC
Q psy8709 122 IHAEMIKDTVRTESYKSAILNN---NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180 (319)
Q Consensus 122 ~~~~m~~d~~r~~~~~~~i~~n---~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d 180 (319)
.++..++-+..+......+..+ .-.+.+++|||+|||+|+-++.+.+.|+..+...|.+
T Consensus 87 vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n 148 (282)
T KOG2920|consen 87 VYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFN 148 (282)
T ss_pred eeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecc
Confidence 4555566555555555555433 4456777777777777777777777776666666654
No 336
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.49 E-value=0.023 Score=49.37 Aligned_cols=39 Identities=28% Similarity=0.444 Sum_probs=32.4
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
..++.+|||+|||+|..++..++.| .+|+++|+++....
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~ 66 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIA 66 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHH
Confidence 4577899999999999999998775 48999999865443
No 337
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.40 E-value=0.038 Score=48.36 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=34.1
Q ss_pred HHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcc
Q psy8709 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPI 184 (319)
Q Consensus 140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~ 184 (319)
+.......++.+|||+|||+|..+..+++. + ..+|+++|+++...
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~ 110 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA 110 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH
Confidence 333345568899999999999999877754 3 56899999985443
No 338
>PRK04148 hypothetical protein; Provisional
Probab=95.38 E-value=0.14 Score=41.77 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred HHHhcCCCCCCCeEEEecCCCCh-hhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHH
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSI 217 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~-l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~ 217 (319)
++..+....++++++++|||+|. ++...++.| ..|.++|+++..... ..+.. ....+-|+.--+..
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~--a~~~~-------~~~v~dDlf~p~~~--- 73 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEK--AKKLG-------LNAFVDDLFNPNLE--- 73 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHH--HHHhC-------CeEEECcCCCCCHH---
Confidence 34444444567899999999997 887777765 699999998763221 11111 11233344433221
Q ss_pred HHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC
Q psy8709 218 FAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY 248 (319)
Q Consensus 218 ~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~ 248 (319)
.-.++.-++++=+.+ +.....+..++.+.
T Consensus 74 --~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 74 --IYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred --HHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 123567899998888 77777777776654
No 339
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.37 E-value=0.038 Score=47.53 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.2
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCC
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGT 182 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~ 182 (319)
..+.++++|||+|||+|.++..++.. +..+++++|+++.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 44678999999999999998887743 3668999999874
No 340
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.35 E-value=0.032 Score=48.85 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=33.0
Q ss_pred CCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~ 186 (319)
+.++.+|||+|||+|.+....+.. +...++|+|+++.....
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~ 82 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 446789999999999998887754 67899999998654443
No 341
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.30 E-value=0.039 Score=48.54 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=34.0
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcc
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPI 184 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~ 184 (319)
....+.++.+|||+|||+|.++...++.. ..+|+++|.++...
T Consensus 71 ~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~ 115 (215)
T TIGR00080 71 ELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA 115 (215)
T ss_pred HHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 33456789999999999999999888654 45799999986443
No 342
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.25 E-value=0.05 Score=47.99 Aligned_cols=40 Identities=35% Similarity=0.448 Sum_probs=32.3
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
..++.+|||+|||+|.++...++.+. .++++|.+......
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~ 100 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE 100 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence 45788999999999999998887775 49999997654443
No 343
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.24 E-value=0.042 Score=48.40 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=35.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCc
Q psy8709 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTP 183 (319)
Q Consensus 138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~ 183 (319)
..+.....+.++.+|||+|||+|.++..+++. + ..+|+++|+++..
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~ 113 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPEL 113 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHH
Confidence 33444456778999999999999999887755 4 4699999998643
No 344
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.24 E-value=0.041 Score=49.67 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=34.0
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcc
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPI 184 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~ 184 (319)
......++.+|||+|||+|.++..++. .+..+++++|.++...
T Consensus 25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i 68 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML 68 (258)
T ss_pred hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 334556789999999999999988874 4578999999986433
No 345
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.21 E-value=0.051 Score=49.46 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~ 186 (319)
..+.++.+|||+|||+|.++..++. .+ ...++|+|+++.....
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~ 113 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV 113 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 3456789999999999999988775 45 4699999998765544
No 346
>PRK06202 hypothetical protein; Provisional
Probab=95.20 E-value=0.045 Score=48.66 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=29.6
Q ss_pred CCCCeEEEecCCCChhhHHHHhc----C-CceEEeeecCCCcc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSGTPI 184 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~----g-a~~V~avd~d~~~~ 184 (319)
.++.+|||+|||+|.++...+.. | ..+++|+|.++...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l 101 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV 101 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH
Confidence 46789999999999988776642 3 35899999986543
No 347
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.20 E-value=0.028 Score=48.75 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.+..++.++||+|||.|--++..|..|- .|+|+|.++....
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~ 66 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALE 66 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHH
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHH
Confidence 3456788999999999999999999986 5999999865544
No 348
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.14 E-value=0.036 Score=54.43 Aligned_cols=65 Identities=43% Similarity=0.561 Sum_probs=48.1
Q ss_pred hhhhhhchhHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCChhhHHHHhcC-----CceEEeeecCCCcccH
Q psy8709 122 IHAEMIKDTVRTESYKSAILNNNSL--------FNNKHVIDVGAGTGILSIFAAQAG-----AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 122 ~~~~m~~d~~r~~~~~~~i~~n~~~--------~~~~~vLD~G~GsG~l~i~aa~~g-----a~~V~avd~d~~~~~~ 186 (319)
.++.+-+|.++...|.++|...... ..++.|+|+|||+|.|...+++.+ +.+|+|++.++....+
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 4556778999999999988754221 146899999999999998887665 7899999998765544
No 349
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.10 E-value=0.031 Score=49.15 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCC
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSG 181 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~ 181 (319)
+.++.+|||+|||+|.++..+++. + ...|+++|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 467889999999999999887754 4 46999999976
No 350
>PRK11524 putative methyltransferase; Provisional
Probab=95.10 E-value=0.023 Score=52.34 Aligned_cols=58 Identities=24% Similarity=0.214 Sum_probs=43.5
Q ss_pred cEEEEEcCcccc--ccCCCceeEEEeccchhhhc-------------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 251 QIEVYHKLLEDV--ELPVESVDIIISEWMGYFLL-------------FETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 251 ~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l~-------------~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+.+++++|..+. .++.++||+|++++++.... +...+..++.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 457888998875 46678999999999864210 11224678999999999999999753
No 351
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.05 E-value=0.04 Score=49.77 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=32.9
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI 184 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~ 184 (319)
....++.+|||+|||+|.++...+... ..+++++|+++...
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~ 66 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV 66 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 445678999999999999998887553 56899999976443
No 352
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.98 E-value=0.03 Score=48.33 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
+.++.+|||+|||.|.+--.......-..+|+|+++.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~ 47 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD 47 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH
Confidence 4589999999999999987777667888899998753
No 353
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.95 E-value=0.031 Score=50.30 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCc
Q psy8709 131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTP 183 (319)
Q Consensus 131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~ 183 (319)
..+++...+-+.... ..++|||+|||+|.+++++++. ...++.++|++...
T Consensus 29 ~~~DaiLL~~~~~~~--~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~ 80 (248)
T COG4123 29 YGTDAILLAAFAPVP--KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEA 80 (248)
T ss_pred cccHHHHHHhhcccc--cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHH
Confidence 344554444433333 3889999999999999999965 67999999998643
No 354
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.86 E-value=0.047 Score=52.55 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=35.5
Q ss_pred HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
+.....+.++.+|||+|||+|.++..+++....+|+++|+++...
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l 203 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ 203 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 334456778999999999999999988865455899999976433
No 355
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.84 E-value=0.036 Score=51.10 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=31.7
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.++++|||+|||+|..++.+++.| .+|+|+|.+.....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~ 156 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLE 156 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHH
Confidence 456699999999999999999876 58999999865544
No 356
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.83 E-value=0.06 Score=52.87 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
....++.+|||+|||+|.+++.++..+ .+++|+|++......
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~ 334 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVER 334 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHH
Confidence 345678899999999999999998765 689999998766554
No 357
>PRK08317 hypothetical protein; Provisional
Probab=94.77 E-value=0.063 Score=47.17 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=35.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCc
Q psy8709 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTP 183 (319)
Q Consensus 138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~ 183 (319)
..+.....+.++.+|||+|||+|.++...+.. + ..+++++|.++..
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~ 56 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAM 56 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHH
Confidence 33444556778999999999999999888754 3 5789999987543
No 358
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.77 E-value=0.067 Score=48.35 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=35.0
Q ss_pred HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
+.......++.+|||+|||+|.++...++.+. .++++|.+....
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~ 64 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA 64 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH
Confidence 33334566889999999999999999997774 599999987543
No 359
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.03 Score=51.53 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=33.1
Q ss_pred eEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccHHHHH
Q psy8709 151 HVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRTESYK 190 (319)
Q Consensus 151 ~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~~~~~ 190 (319)
+|+|+|||||.+++..++.. ...|+|+|+++........+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence 89999999999999999776 56999999998666554333
No 360
>PLN02244 tocopherol O-methyltransferase
Probab=94.72 E-value=0.068 Score=50.60 Aligned_cols=39 Identities=31% Similarity=0.306 Sum_probs=32.6
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.++++|||+|||+|.++..+++....+|+++|+++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~ 155 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAA 155 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 678899999999999999988755669999999865444
No 361
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.69 E-value=0.062 Score=49.29 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=30.3
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG 181 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~ 181 (319)
.+.....+.+|.+|||+|||-|.+++.+++.-..+|+++.++.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~ 95 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE 95 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH
Confidence 4556678999999999999999999999965334799998763
No 362
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.68 E-value=0.056 Score=49.24 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=33.7
Q ss_pred HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709 141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP 183 (319)
Q Consensus 141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~ 183 (319)
.....+.++.+|||+|||+|..+...+.....+++++|+++..
T Consensus 45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~ 87 (263)
T PTZ00098 45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM 87 (263)
T ss_pred HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence 3445677899999999999999887775445589999987543
No 363
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.68 E-value=0.039 Score=48.14 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~ 186 (319)
++.+|||+|||+|.++...+.. ....++++|+++.....
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~ 79 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGK 79 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHH
Confidence 5789999999999999988754 46789999998754443
No 364
>PRK05785 hypothetical protein; Provisional
Probab=94.66 E-value=0.041 Score=48.95 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=31.4
Q ss_pred CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
++.+|||+|||||.++...+.....+++|+|.+......
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 478999999999999988876545689999998655443
No 365
>PRK13699 putative methylase; Provisional
Probab=94.63 E-value=0.036 Score=49.47 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred EEEEcCcccc--ccCCCceeEEEeccchhhh-c-----------chhhHHHHHHHHhcccCCCcEEEe
Q psy8709 253 EVYHKLLEDV--ELPVESVDIIISEWMGYFL-L-----------FETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 253 ~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l-~-----------~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+++++|..++ .++++++|+|++++++..- . ..+-...++.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5778888766 6788999999999987410 0 012346788999999999999875
No 366
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.52 E-value=0.45 Score=43.30 Aligned_cols=124 Identities=11% Similarity=0.102 Sum_probs=83.2
Q ss_pred HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCC--CCcEEEEEcCcccc-
Q psy8709 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY--DSQIEVYHKLLEDV- 262 (319)
Q Consensus 186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~--~~~i~~i~~d~~~~- 262 (319)
+..+-+.+...+... ...|+.+|||--.-...+.......++-+|..++++.-++.+...+. ..+.+++..|+.+.
T Consensus 67 tr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w 145 (260)
T TIGR00027 67 TRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDW 145 (260)
T ss_pred HHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhH
Confidence 333334444443322 34799999998766666543323478888888866666677776442 36788999998621
Q ss_pred -------ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 263 -------ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 263 -------~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
.+....--+++++.+.+++ .++....+++.+.+...||+.++++..+.
T Consensus 146 ~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 146 PAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred HHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 1112345578888887775 44677899999999888999999987654
No 367
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.51 E-value=0.067 Score=50.04 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.++.+|||+|||+|.+++.++..+ .+|+++|+++.....
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~ 210 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIAC 210 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHH
Confidence 357899999999999999999866 689999998665544
No 368
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.39 E-value=0.11 Score=47.02 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=31.2
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.++.+|||+|||+|.++...+..| ..|+++|+++....
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~ 80 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQ 80 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHH
Confidence 356799999999999999998875 68999998765443
No 369
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=94.34 E-value=0.099 Score=46.97 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=30.0
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
.++.+|||+|||+|.++...+..+ ..++++|+++...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l 77 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPML 77 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHH
Confidence 357899999999999988877655 6899999986443
No 370
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.33 E-value=0.042 Score=49.19 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~ 186 (319)
....++.+|||+|||||.++..+++ .+ ..+|+++|+++.....
T Consensus 43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 3466889999999999999998774 45 5799999998765544
No 371
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.32 E-value=0.17 Score=47.47 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=55.3
Q ss_pred ccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709 198 SLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS 274 (319)
Q Consensus 198 ~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis 274 (319)
...++.+||-.||| .|.++..+++ .|..+|+++|.++ .++.++ +.|...-+..-..++.+.....+.+|+|+.
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 34467889888876 4555666666 4666899999998 554443 344311111111122221111235899985
Q ss_pred ccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.. + . ...+....+.|++||.++.-
T Consensus 242 ~~-G----~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 242 VS-G----H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CC-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 32 1 1 12445566789999998853
No 372
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.29 E-value=0.058 Score=39.87 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=25.6
Q ss_pred EEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
||+|||+|..+...++.+..+++++|.+..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~ 30 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE 30 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH
Confidence 799999999999999889999999999754
No 373
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=94.29 E-value=0.12 Score=45.80 Aligned_cols=40 Identities=40% Similarity=0.485 Sum_probs=31.8
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP 183 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~ 183 (319)
.....++.+|||+|||+|.++...++.+ ..++++|.+...
T Consensus 43 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~ 82 (233)
T PRK05134 43 HAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEEN 82 (233)
T ss_pred hccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHH
Confidence 3345688999999999999998888776 468999887543
No 374
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=94.25 E-value=0.075 Score=50.00 Aligned_cols=47 Identities=28% Similarity=0.267 Sum_probs=36.3
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
++.....+.+++++||+|||||.+.++++..+ ..++|+|++......
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~ 219 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAG 219 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHH
Confidence 33333456788999999999999999988765 579999998755443
No 375
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.24 E-value=0.085 Score=48.95 Aligned_cols=46 Identities=28% Similarity=0.378 Sum_probs=36.0
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.+.......++.+|||+|||+|.++..++..+ .+++++|+|.....
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~ 72 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVA 72 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHH
Confidence 34444566788999999999999999888654 57999999865444
No 376
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.15 E-value=0.07 Score=49.25 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=37.4
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
.+..+.....+.+|+|+|||.|.+++.+++.. ..+++=+|++......
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES 197 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH
Confidence 44455565666699999999999999999776 7888889988655544
No 377
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.14 E-value=0.12 Score=45.34 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=31.9
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
......++.+|||+|||+|.++...++.. .+++++|.++.
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~ 111 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKT 111 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHH
Confidence 33456788999999999999998777665 47999998843
No 378
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.10 E-value=0.16 Score=47.85 Aligned_cols=94 Identities=23% Similarity=0.216 Sum_probs=60.4
Q ss_pred cccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC-ccccccCCCceeEE
Q psy8709 197 KSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL-LEDVELPVESVDII 272 (319)
Q Consensus 197 l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d-~~~~~~~~~~fD~I 272 (319)
....++++|+-+|+| .|.++..+++ .| .+|+++|.++ -.+.|++ .|- -.++... ....+.-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGA---d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGA---DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCC---cEEEEcCCchhhHHhHhhCcEE
Confidence 456778899888887 5577888888 56 6999999999 5555554 332 2334433 21111111349999
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+.... ...+....+.|++||.++.--
T Consensus 234 i~tv~----------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 234 IDTVG----------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EECCC----------hhhHHHHHHHHhcCCEEEEEC
Confidence 96432 233455567899999998543
No 379
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.099 Score=45.81 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=33.7
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
.-..+.++.+||++|||||..+-..+++.. +|+++|....
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~ 105 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEE 105 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHH
Confidence 345688999999999999999988887766 9999998743
No 380
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.07 E-value=0.07 Score=49.98 Aligned_cols=39 Identities=36% Similarity=0.387 Sum_probs=32.6
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.++.+|||+|||+|.+++..++.| ..|+++|+++.....
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~ 181 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAE 181 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHH
Confidence 467899999999999999999876 589999998765443
No 381
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.01 E-value=0.093 Score=47.49 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~ 186 (319)
.+.++||+|||+|.+++.++. .+..+++++|+++.....
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~ 125 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC 125 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 345899999999999999874 456789999998766554
No 382
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.01 E-value=0.09 Score=50.46 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=32.8
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.+++++||++||+|.+++.++..+ ..++++|+++.....
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~ 270 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIAC 270 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHH
Confidence 456899999999999999999665 689999998766554
No 383
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.99 E-value=0.088 Score=47.82 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709 134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR 185 (319)
Q Consensus 134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~ 185 (319)
+.+...+.......++.+|||+|||+|.+++..+... ...++++|+++....
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~ 146 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALA 146 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 3344433333345577899999999999999988654 788999999865443
No 384
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.97 E-value=0.2 Score=45.61 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=75.7
Q ss_pred ccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC---CCceeEE
Q psy8709 198 SLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP---VESVDII 272 (319)
Q Consensus 198 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~---~~~fD~I 272 (319)
....|+.|+-+| -.-..++.++-. -+.+|..+|+++ .+....+.+++.|+ ++++.+.-|+.+. +| ..+||++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCee
Confidence 344567899898 444445544442 256999999999 99999999999998 6799999998773 44 3689999
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCC---cEEEeecC
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPD---GVVCPNRF 309 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~Lkpg---G~li~~~~ 309 (319)
+.+++.- ...+..++..=...||.- |++.++.-
T Consensus 226 iTDPpeT----i~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 226 ITDPPET----IKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ecCchhh----HHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 9988732 245666666666667655 77776554
No 385
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.93 E-value=0.071 Score=48.03 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCCCCeEEEecCCCChhhHHHHh---cCCceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQ---AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~---~ga~~V~avd~d~~~~~~ 186 (319)
..++.+|||+|||+|.++...++ ....+++++|.++.....
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~ 97 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER 97 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 34778999999999999887765 246799999998654443
No 386
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.93 E-value=0.65 Score=41.86 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred HHHHhcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH--HHHHHH
Q psy8709 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT--ESYKSA 192 (319)
Q Consensus 138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~--~~~~~~ 192 (319)
.+|....++.+|.+|++.|+|||.++...+. .| ..+|+.+|+....... +++..+
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 3566677899999999999999999999884 55 5999999997654443 455544
No 387
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.91 E-value=0.079 Score=51.36 Aligned_cols=54 Identities=31% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709 131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~ 186 (319)
..+..+...+... +.++.++||+|||+|.+++..++ ....+++++|+++.....
T Consensus 236 peTE~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~ 290 (423)
T PRK14966 236 PETEHLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290 (423)
T ss_pred ccHHHHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 3344455544333 23567999999999999998875 457899999998655443
No 388
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.85 Score=41.05 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=68.4
Q ss_pred ccccCCCcceeeccCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHH-HHHHhcCCCCcEEEEEcCcccc--ccCC
Q psy8709 196 NKSLFNNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSD-IAYETI-DIIRKNKYDSQIEVYHKLLEDV--ELPV 266 (319)
Q Consensus 196 ~l~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s~-~i~~a~-~~~~~~g~~~~i~~i~~d~~~~--~~~~ 266 (319)
......+...+|+|+|+..-+..+... + ...++.+|+|. .+.... ..+... ..-.+.-+.+|.+.- .+|.
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-PGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-CCCeEeehhhhHHHHHhcccC
Confidence 334444679999999999777766653 2 35899999999 665544 444443 223566667776532 2332
Q ss_pred CceeEEEe-cc-chhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 267 ESVDIIIS-EW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 267 ~~fD~Iis-~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
.+--+++. .. .++ ........++.++...|.||-++++.
T Consensus 152 ~~~Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 152 GGRRLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred CCeEEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence 22233332 21 222 23356678999999999999998854
No 389
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.89 E-value=0.079 Score=51.25 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=33.7
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.++++|||+|||+|.+++.++..|+.+|+++|++.....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~ 257 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALD 257 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 468999999999999999988878999999999865443
No 390
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.88 E-value=0.09 Score=49.86 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=31.7
Q ss_pred CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
...+|||+|||+|.+++.+++.. ..+++++|++......
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~ 235 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES 235 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 34589999999999999988765 5689999998655544
No 391
>KOG1501|consensus
Probab=93.84 E-value=0.052 Score=52.25 Aligned_cols=48 Identities=33% Similarity=0.481 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCCC--CeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709 134 ESYKSAILNNNSLFNN--KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG 181 (319)
Q Consensus 134 ~~~~~~i~~n~~~~~~--~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~ 181 (319)
....+.|.+..+...+ -.|||+|+|||+++++|++.|+-.++|++.-.
T Consensus 50 ~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~Evfk 99 (636)
T KOG1501|consen 50 LGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFK 99 (636)
T ss_pred HHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence 3445555555554333 37899999999999999999999999998753
No 392
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.66 E-value=0.14 Score=45.16 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCC
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGT 182 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~ 182 (319)
...++.+|||+|||+|.++..++..+ ..+++++|.+..
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 34478899999999999999988766 489999998754
No 393
>PRK14968 putative methyltransferase; Provisional
Probab=93.64 E-value=0.1 Score=44.29 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
.+++++||+|||+|.++...+.. ...++++|.++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~ 58 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAV 58 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHH
Confidence 57889999999999999998876 58899999885443
No 394
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.57 E-value=0.14 Score=45.11 Aligned_cols=48 Identities=23% Similarity=0.449 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCC
Q psy8709 135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGT 182 (319)
Q Consensus 135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~ 182 (319)
.....+.....+.++.+|||+|||||..+..++.+ | ...|+++|.++.
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~ 108 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE 108 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH
Confidence 33444555567899999999999999999888855 5 356999998753
No 395
>PTZ00146 fibrillarin; Provisional
Probab=93.55 E-value=0.1 Score=48.25 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=32.5
Q ss_pred cCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecC
Q psy8709 143 NNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKS 180 (319)
Q Consensus 143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d 180 (319)
+..+.++.+|||+|||+|.++..++.. + ...|+++|++
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s 166 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS 166 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc
Confidence 455789999999999999999998855 4 5789999987
No 396
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.16 Score=45.23 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=37.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG 181 (319)
Q Consensus 138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~ 181 (319)
.++....-..+++.+||+|+.||.++-.+.+.||+.|||+|+..
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~ 112 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY 112 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence 34444455789999999999999999999999999999999864
No 397
>PRK11524 putative methyltransferase; Provisional
Probab=93.50 E-value=0.2 Score=46.12 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=45.8
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK 245 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~ 245 (319)
..+.+.++.... .+|..|||.-||+|..+..+.+.| .+.+|+|+++ .++.|.+++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 555555554443 567899999999999999888885 4999999999 99999988754
No 398
>PRK06922 hypothetical protein; Provisional
Probab=93.49 E-value=0.14 Score=52.29 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=33.4
Q ss_pred CCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~ 186 (319)
.+.++.+|||+|||+|.++...+ ......++|+|++......
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~ 457 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT 457 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 45578999999999999887766 4567899999998754433
No 399
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.44 E-value=0.087 Score=48.61 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=32.1
Q ss_pred CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
++.+|||+|||+|.+++.+++.. ..+++++|+++.....
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~ 160 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV 160 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 45789999999999999999654 6799999998655444
No 400
>PHA03411 putative methyltransferase; Provisional
Probab=93.44 E-value=0.31 Score=44.70 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI 184 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~ 184 (319)
...+|||+|||+|.+++.++.. +..+++++|+++...
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al 101 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA 101 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 4568999999999999888754 467999999986433
No 401
>KOG2904|consensus
Probab=93.41 E-value=0.18 Score=45.86 Aligned_cols=45 Identities=29% Similarity=0.451 Sum_probs=36.4
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~ 186 (319)
+|...+.+..++|+|||||-+++... .++...++|+|.+..+..-
T Consensus 142 ~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 142 NNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL 187 (328)
T ss_pred hhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH
Confidence 44556777799999999999999876 7779999999998655443
No 402
>PHA03412 putative methyltransferase; Provisional
Probab=93.40 E-value=0.057 Score=48.32 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCCeEEEecCCCChhhHHHHhc----CCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA----GAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~----ga~~V~avd~d~~~~~~ 186 (319)
.+.+|||+|||+|.+++.+++. ....++++|+++.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 3679999999999999988853 34589999999765444
No 403
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=93.40 E-value=0.11 Score=44.78 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
++.+|||+|||+|.++...+..+...++++|.+..
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~ 47 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD 47 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH
Confidence 67899999999999988777655557789887643
No 404
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.39 E-value=0.11 Score=46.40 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=30.9
Q ss_pred CCCCeEEEecCCCChhhHHHHhc---CCceEEeeecCCCcc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSGTPI 184 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~---ga~~V~avd~d~~~~ 184 (319)
.++.+|||+|||+|.++...++. ...+++++|.++...
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml 92 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV 92 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH
Confidence 47789999999999999888753 367899999976444
No 405
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.32 E-value=0.065 Score=46.05 Aligned_cols=59 Identities=39% Similarity=0.581 Sum_probs=50.6
Q ss_pred hhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 121 HIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 121 ~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
.||...+.|..|...+..+|..-.. .++.|+|+|||++++.|+.. |.+|+|++.++...
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a 67 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA 67 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHH
Confidence 3677899999999999998866543 78999999999999999988 99999999987543
No 406
>PHA01634 hypothetical protein
Probab=93.31 E-value=0.24 Score=39.98 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=53.5
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCC
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA 225 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~ 225 (319)
...+++|+|+|++-|--++.-+..||+.|++++.++. +++....++.. -.|.|=|-|.|.+.. ..|..
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k------l~k~~een~k~---nnI~DK~v~~~eW~~---~Y~~~ 93 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK------LRKKWEEVCAY---FNICDKAVMKGEWNG---EYEDV 93 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH------HHHHHHHHhhh---heeeeceeecccccc---cCCCc
Confidence 4689999999999999999999999999999998642 22222222222 278888888875432 34444
Q ss_pred EEEEEecHH
Q psy8709 226 KVFAIEKSD 234 (319)
Q Consensus 226 ~V~gvD~s~ 234 (319)
.+.-+|-..
T Consensus 94 Di~~iDCeG 102 (156)
T PHA01634 94 DIFVMDCEG 102 (156)
T ss_pred ceEEEEccc
Confidence 566565543
No 407
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.30 E-value=0.24 Score=43.05 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=30.7
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCC--ceEEeeecCCC
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSGT 182 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga--~~V~avd~d~~ 182 (319)
..++.+|||+|||+|.++...++.+. .+++++|.++.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~ 75 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence 44789999999999999988886665 58999998753
No 408
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.17 E-value=0.47 Score=42.88 Aligned_cols=120 Identities=12% Similarity=0.173 Sum_probs=68.0
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH----c--CCCEEEEEecHH--------------------------
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ----A--GAAKVFAIEKSD-------------------------- 234 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~----~--g~~~V~gvD~s~-------------------------- 234 (319)
.++...+...+...-...|+|+||-.|..++.++. . ...++++.|.-+
T Consensus 60 ~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~ 139 (248)
T PF05711_consen 60 DNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLA 139 (248)
T ss_dssp HHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCT
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccc
Confidence 44555555555444557899999999987765543 2 245788887421
Q ss_pred -HHHHHHHHHHhcCC-CCcEEEEEcCccccc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709 235 -IAYETIDIIRKNKY-DSQIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310 (319)
Q Consensus 235 -~i~~a~~~~~~~g~-~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t 310 (319)
..+..++++...|+ .++++++.|.+.+.- .|.+++-++..+.=.| +.-...|..++..|.|||+++++...
T Consensus 140 ~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-----esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 140 VSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-----ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp HHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred cCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch-----HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 12223333333343 468999999986542 2345565655543222 34467789999999999999998755
Q ss_pred c
Q psy8709 311 L 311 (319)
Q Consensus 311 ~ 311 (319)
.
T Consensus 215 ~ 215 (248)
T PF05711_consen 215 H 215 (248)
T ss_dssp T
T ss_pred C
Confidence 4
No 409
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=93.16 E-value=0.17 Score=45.95 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
.+.|.......++.+||++|+|.|.++...++.+++ |+++|+|..
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~ 63 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRR 63 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHH
Confidence 445556667778999999999999999999998877 999999953
No 410
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=93.15 E-value=0.15 Score=47.02 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=30.9
Q ss_pred CeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 150 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 150 ~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
.+|||+|||+|.+++..+... ..+++++|++......
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~ 153 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV 153 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 689999999999999998665 5799999998655443
No 411
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.12 E-value=0.21 Score=43.51 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETI 240 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~ 240 (319)
..+.+.++... ..++..|||.-||+|..+..+.+.|- +.+|+|+++ ..+.|.
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhc
Confidence 45555555444 34578999999999999999888854 899999999 777765
No 412
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.06 E-value=0.22 Score=46.87 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.4
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcc
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPI 184 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~ 184 (319)
......++.+|||+|||+|.++..+++.. ...|+++|.++...
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l 118 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC 118 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 33456688999999999999998888543 34799999986443
No 413
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.06 E-value=0.11 Score=47.24 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=32.5
Q ss_pred CCCCCCeEEEecCCCChhhHHHHh-cCC-ceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQ-AGA-AKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~-~ga-~~V~avd~d~~~~~~ 186 (319)
.+.++.+|||+|||+|...+.+++ .+. .+++++|+++.....
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~ 117 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAK 117 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHH
Confidence 356899999999999998887764 454 589999997654333
No 414
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.03 E-value=0.43 Score=40.39 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=62.7
Q ss_pred ccCCCchHHHHHHHc-C-CCEEEEEecHH---HHHH---HHHHHHhcCCCCcEEEEEcCccccc----cCCCceeEEEec
Q psy8709 208 VGAGTGILSIFAAQA-G-AAKVFAIEKSD---IAYE---TIDIIRKNKYDSQIEVYHKLLEDVE----LPVESVDIIISE 275 (319)
Q Consensus 208 iGcGtG~ls~~la~~-g-~~~V~gvD~s~---~i~~---a~~~~~~~g~~~~i~~i~~d~~~~~----~~~~~fD~Iis~ 275 (319)
||=|.=.++..+++. + ...+++.-... ..+. +..++.......-.....-|+..+. .....||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 555555666777774 4 55666665443 2222 2233333211111223344665553 245789999999
Q ss_pred cchhhh----------cchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 276 WMGYFL----------LFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 276 ~~~~~l----------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
.|+-.- .+...+..++..+.++|+++|.+.++.++-
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 875431 112457889999999999999999887764
No 415
>PRK13699 putative methylase; Provisional
Probab=93.03 E-value=0.28 Score=43.71 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN 246 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~ 246 (319)
..+.+.++.... .++..|||.-||+|.....+.+.|- +.+|+|+++ ..+.+.++++..
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 444455554433 4678999999999999998888865 899999999 888888877653
No 416
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.02 E-value=0.46 Score=38.86 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHh-----cCCceEEeeecCCCcccH
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQ-----AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~-----~ga~~V~avd~d~~~~~~ 186 (319)
....+..+|+|+|||.|.++...+. .....|.++|.++.....
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 3456788999999999999999987 568899999999765444
No 417
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=92.89 E-value=0.071 Score=40.44 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=25.1
Q ss_pred EEecCCCChhhHHHH-hcCCceEEeeecCCCcc
Q psy8709 153 IDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 153 LD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~ 184 (319)
||+|||+|.++.... .....+++++|+++...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l 33 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML 33 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 799999999987776 55788999999998766
No 418
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.78 E-value=0.13 Score=44.44 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.2
Q ss_pred CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI 184 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~ 184 (319)
....+||+|||+|.+++..++. ....++|+|++....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l 53 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV 53 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH
Confidence 4568999999999999888854 477899999986543
No 419
>PLN02672 methionine S-methyltransferase
Probab=92.70 E-value=0.12 Score=55.83 Aligned_cols=41 Identities=27% Similarity=0.562 Sum_probs=34.0
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
.+++++|||+|||||.+++.+++.. ..+++++|+++.....
T Consensus 116 ~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~ 157 (1082)
T PLN02672 116 IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV 157 (1082)
T ss_pred cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 3567899999999999999988654 6899999999866544
No 420
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.60 E-value=0.14 Score=39.04 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=24.3
Q ss_pred EEEecCCCChhhHHHHhc---C-CceEEeeecCCCccc
Q psy8709 152 VIDVGAGTGILSIFAAQA---G-AAKVFAIEKSGTPIR 185 (319)
Q Consensus 152 vLD~G~GsG~l~i~aa~~---g-a~~V~avd~d~~~~~ 185 (319)
|||+|||+|......... + ..+++++|++.....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~ 38 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLE 38 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHH
Confidence 799999999999988855 3 389999999865443
No 421
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=92.45 E-value=0.16 Score=43.74 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~ 182 (319)
.++.++||+=||||.++++|...||++|+.+|.+..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~ 76 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRK 76 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHH
Confidence 689999999999999999999999999999999754
No 422
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.45 E-value=0.23 Score=48.51 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
...++.+|||+|||+|.+++.+++. +.+|+++|++......
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~ 329 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEK 329 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHH
Confidence 4556789999999999999999875 4689999998655443
No 423
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.34 E-value=0.15 Score=45.54 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=31.5
Q ss_pred CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~ 186 (319)
.+.+|||+|||+|.+++.++.. ....++++|+++.....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~ 126 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV 126 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 4568999999999999999865 46799999998655443
No 424
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.30 E-value=0.17 Score=46.77 Aligned_cols=69 Identities=29% Similarity=0.339 Sum_probs=49.4
Q ss_pred ceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEeccchhh
Q psy8709 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISEWMGYF 280 (319)
Q Consensus 204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~~~~~~ 280 (319)
+++|+-||-|.++.-+.+.|...+.++|+++ .|.+..+.|- + ....+|+.++. ++. .+|+++..++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~---~a~~~y~~N~--~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP---DACETYKANF--P--EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH---HHHHHHHHHH--T--EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH---HHHHhhhhcc--c--ccccccccccccccccc-cceEEEeccCCce
Confidence 6899999999999999999988999999999 3333333331 1 78889998875 443 5999998876544
No 425
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.17 E-value=0.68 Score=44.33 Aligned_cols=105 Identities=20% Similarity=0.134 Sum_probs=63.1
Q ss_pred ccccCCCcceeeccCCC-chHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-----c-cc-C
Q psy8709 196 NKSLFNNKHVIDVGAGT-GILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-----V-EL-P 265 (319)
Q Consensus 196 ~l~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-----~-~~-~ 265 (319)
.....++.+||..|||. |..+..+++. |..++++++.++ ..+.+++.. +. .++...-.+ + .+ +
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~----~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA----ETINFEEVDDVVEALRELTG 251 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc----EEEcCCcchHHHHHHHHHcC
Confidence 34566788999999987 7788888874 655799999998 666555431 21 222211111 1 11 2
Q ss_pred CCceeEEEeccchhh------------hcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 266 VESVDIIISEWMGYF------------LLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 266 ~~~fD~Iis~~~~~~------------l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
...+|+|+....+.. +....+....+.++.+.|+|+|.++.-
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 236999986421110 011122245678888999999998843
No 426
>KOG0024|consensus
Probab=92.07 E-value=0.28 Score=45.71 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=62.5
Q ss_pred ccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC--cccc------ccCC
Q psy8709 198 SLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL--LEDV------ELPV 266 (319)
Q Consensus 198 ~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d--~~~~------~~~~ 266 (319)
....+.+||-+|+| .|.++...++ .|+++|+.+|+++ -++.|++ .|. +.+...... ...+ .+..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga-~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGA-TVTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCC-eEEeeccccccHHHHHHHHHhhccc
Confidence 45678899999999 6788888888 5999999999999 7777776 333 112111111 1111 1222
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 307 (319)
..+|+.+...- ....++.....+++||.++.-
T Consensus 241 ~~~d~~~dCsG---------~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 241 KQPDVTFDCSG---------AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred cCCCeEEEccC---------chHHHHHHHHHhccCCEEEEe
Confidence 45888885332 234455566788999997743
No 427
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.04 E-value=0.35 Score=42.42 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=31.8
Q ss_pred hcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709 142 NNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 142 ~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~ 186 (319)
...++.++..++|+|||.|-+-+.+| ..+.++.+|+|+.+.....
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~ 81 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDL 81 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHH
Confidence 34567789999999999999988887 7789999999999766554
No 428
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.02 E-value=0.15 Score=47.59 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=31.1
Q ss_pred CeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709 150 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 150 ~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~ 186 (319)
.+|||+|||+|.+++..+.. ...+++++|+++.....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~ 172 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV 172 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999998865 46799999998765554
No 429
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.00 E-value=0.33 Score=44.25 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCCCeEEEecCCCCh----hhHHHHhcC------CceEEeeecCCCcccH
Q psy8709 147 FNNKHVIDVGAGTGI----LSIFAAQAG------AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~----l~i~aa~~g------a~~V~avd~d~~~~~~ 186 (319)
.++.+|||+|||||- +++.++..+ ..+|+|+|++......
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 356799999999996 565555432 3689999999755443
No 430
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=91.93 E-value=0.19 Score=47.21 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCeEEEecCCCChhhHHH-HhcCCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFA-AQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~a-a~~ga~~V~avd~d~~~~~~ 186 (319)
.+.++||+|||+|.+..+. ++....+++|+|+++.....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~ 153 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALAS 153 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHH
Confidence 5679999999998665554 45557789999998765554
No 431
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=91.79 E-value=0.22 Score=43.73 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCC
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGT 182 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~ 182 (319)
..+++|||+|||+|.++...+..+ ..+++++|.+..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 69 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG 69 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH
Confidence 456899999999999998888666 566899998753
No 432
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.60 E-value=0.31 Score=46.32 Aligned_cols=94 Identities=24% Similarity=0.304 Sum_probs=59.3
Q ss_pred CCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC-cc-cc-ccCC-CceeEE
Q psy8709 200 FNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL-LE-DV-ELPV-ESVDII 272 (319)
Q Consensus 200 ~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d-~~-~~-~~~~-~~fD~I 272 (319)
.++.+|+=+||| .|.++..+++ .|+.+|+.+|.++ -++.|++.... +.+.....+ .. .. .... ..+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEE
Confidence 334489999999 6777777777 5889999999999 77777653211 111111111 10 01 1222 369999
Q ss_pred EeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+-.. + ....+..+.++++|||.+++
T Consensus 243 ie~~-G--------~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 243 IEAV-G--------SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred EECC-C--------CHHHHHHHHHHhcCCCEEEE
Confidence 8432 1 23466777889999999884
No 433
>KOG2651|consensus
Probab=91.60 E-value=0.47 Score=45.13 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q psy8709 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETID 241 (319)
Q Consensus 187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~ 241 (319)
+.+.+.+-+......-..|+|+|+|.|.++.+++-...-.|.+||-|. ..+.|++
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 344444444444444578999999999999999875444999999999 6666554
No 434
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.59 E-value=0.21 Score=36.65 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=28.3
Q ss_pred eEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709 151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP 183 (319)
Q Consensus 151 ~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~ 183 (319)
+++|+|||+|.++...+.....+++++|.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~ 33 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVA 33 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHH
Confidence 489999999999988888778899999987544
No 435
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.59 E-value=0.054 Score=45.06 Aligned_cols=50 Identities=26% Similarity=0.265 Sum_probs=38.2
Q ss_pred cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS 312 (319)
Q Consensus 262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~ 312 (319)
..+.+++.|+|.++-+.-++.. .....+++++++.|||||++-+.-+...
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4567789999998766555544 4456789999999999999987766543
No 436
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=91.49 E-value=0.26 Score=43.33 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=26.8
Q ss_pred CeEEEecCCCChhhHHHHhc-CCceEEeeecCCC
Q psy8709 150 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGT 182 (319)
Q Consensus 150 ~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~ 182 (319)
++|||+|||+|.....+++. +..+++++|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~ 34 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE 34 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence 47999999999998888754 4678999998643
No 437
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=91.43 E-value=0.16 Score=44.74 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.++.+|||+|||+|.-++..|..|. .|+|+|+++.....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ 71 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 3678999999999999999997664 69999998765553
No 438
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.42 E-value=2.5 Score=41.39 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccc------------------cCC
Q psy8709 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS------------------LFN 201 (319)
Q Consensus 140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~------------------~~~ 201 (319)
+.......++.++||+=||.|.+++..| ....+|+|+|+.+..+.....+....+..+ ..+
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCC
Confidence 3333445678899999999999999999 567899999999877766554444433321 123
Q ss_pred Ccceeec-cCCCc-hHHHHHHHcCCCEEEEEecHH
Q psy8709 202 NKHVIDV-GAGTG-ILSIFAAQAGAAKVFAIEKSD 234 (319)
Q Consensus 202 ~~~VLDi-GcGtG-~ls~~la~~g~~~V~gvD~s~ 234 (319)
+..|+|. .+|-+ .+...+++.+..+|+.|-.+|
T Consensus 364 d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP 398 (432)
T COG2265 364 DVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNP 398 (432)
T ss_pred CEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCH
Confidence 3456664 45555 556666666666777777676
No 439
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=91.38 E-value=0.24 Score=42.43 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-Cce---------EEeeecCCCcccH
Q psy8709 137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAK---------VFAIEKSGTPIRT 186 (319)
Q Consensus 137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~---------V~avd~d~~~~~~ 186 (319)
..++..-..+.++..+||.-||||.+.++++..+ ... ++|.|++......
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~ 76 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRG 76 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHH
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHH
Confidence 4445555667789999999999999999999665 333 7899998766544
No 440
>PRK04457 spermidine synthase; Provisional
Probab=91.20 E-value=0.86 Score=41.47 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCccc
Q psy8709 148 NNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~ 185 (319)
++++||++|||+|.++...+ .....+++++|+++....
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~ 104 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIA 104 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 56899999999999998776 455788999999865433
No 441
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=91.16 E-value=0.41 Score=45.35 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=29.8
Q ss_pred CCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCc
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTP 183 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~ 183 (319)
.++.+|||+|||+|.++...++ .+...++++|.++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m 149 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH
Confidence 3678999999999999887764 456789999987543
No 442
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.06 E-value=0.23 Score=40.18 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=28.7
Q ss_pred eEEEecCCCChhhHHHHhcCC-ceEEeeecCCCccc
Q psy8709 151 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSGTPIR 185 (319)
Q Consensus 151 ~vLD~G~GsG~l~i~aa~~ga-~~V~avd~d~~~~~ 185 (319)
++||+|||.|.+++..++.++ .+++++|.++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 589999999999999987775 48999998764433
No 443
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.01 E-value=0.38 Score=43.72 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=35.3
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG 181 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~ 181 (319)
.|.......++.+|+++|.|.|.++-.....+ ++++++|.|+
T Consensus 21 ~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~ 62 (262)
T PF00398_consen 21 KIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDP 62 (262)
T ss_dssp HHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSH
T ss_pred HHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcH
Confidence 33344455589999999999999999999888 9999999985
No 444
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=90.90 E-value=0.41 Score=43.26 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~ 186 (319)
+|.....+.||.+|++.|+|||.++...++ .| ..+|+..|+...+...
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~ 80 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK 80 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH
Confidence 555667899999999999999999999884 44 7899999997655443
No 445
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=90.88 E-value=0.21 Score=44.23 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.++.+|||+|||+|.-.+..|..|. .|+|+|+++.....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 3567999999999999999988665 69999998765554
No 446
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=90.87 E-value=0.36 Score=47.15 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=34.6
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
...++.+|||+|||+|..++.++..+ ...|+++|.+..+...
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~ 283 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER 283 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 45689999999999999999988665 4799999998765444
No 447
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.83 E-value=0.57 Score=43.52 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCc
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTP 183 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~ 183 (319)
++.+|||+|||||..+....... ..+++++|++...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m 100 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADA 100 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH
Confidence 67899999999999998877554 5789999998754
No 448
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=90.75 E-value=0.28 Score=43.24 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709 131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~ 186 (319)
.|+....+.+ ....+.....|.|+|||.|..+-..+ ++....++|+|.++.....
T Consensus 14 eRtRPa~dLl-a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~ 69 (257)
T COG4106 14 ERTRPARDLL-ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAK 69 (257)
T ss_pred hccCcHHHHH-hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHH
Confidence 3444444433 33455677799999999999987766 7789999999988654443
No 449
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.75 E-value=0.4 Score=44.89 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=49.4
Q ss_pred eeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchh
Q psy8709 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGY 279 (319)
Q Consensus 205 VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~ 279 (319)
|+|+.||.|.++.-+.+.|..-+.++|+++ .|.+..+.|-. + .++.+|+.++... ...+|+++..++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~---~a~~ty~~N~~-~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK---YAQKTYEANFG-N--KVPFGDITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH---HHHHHHHHhCC-C--CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence 689999999999999999987788999999 33333333321 2 4566888776521 23689999877644
No 450
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=90.50 E-value=0.4 Score=41.88 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=28.8
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCC
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGT 182 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~ 182 (319)
..++.+|+|+-||-|.+++.+|+.+ ++.|+|.|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~ 136 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD 136 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH
Confidence 5689999999999999999999754 888999999854
No 451
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=90.37 E-value=0.35 Score=44.16 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=28.8
Q ss_pred CCCeEEEecCCCChhhHHHHhc-C---CceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-G---AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-g---a~~V~avd~d~~~~~~ 186 (319)
.+.+|||+|||+|.++...+.. . ...++|+|++......
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 4578999999999998776643 2 2378999998654443
No 452
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=90.34 E-value=0.56 Score=43.52 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=32.0
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeec
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEK 179 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~ 179 (319)
.+.......++.++||+|||+|.+++.+++.. ..+++++|.
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~ 181 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL 181 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec
Confidence 34444556678999999999999999888654 567888886
No 453
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.30 E-value=0.95 Score=40.82 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=43.9
Q ss_pred CcceeeccCCCchHHHHHHHc---------CCCEEEEEecHH-HHHHHHHHHHhc-----CCCCcEEEEEcCccccccCC
Q psy8709 202 NKHVIDVGAGTGILSIFAAQA---------GAAKVFAIEKSD-IAYETIDIIRKN-----KYDSQIEVYHKLLEDVELPV 266 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s~-~i~~a~~~~~~~-----g~~~~i~~i~~d~~~~~~~~ 266 (319)
.-+|+|+|+|+|.++..+++. ...+++-||.|+ +.+..++.+... ....++.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 369999999999999887763 124899999999 776666666542 13345666 23443332
Q ss_pred CceeEEEeccch
Q psy8709 267 ESVDIIISEWMG 278 (319)
Q Consensus 267 ~~fD~Iis~~~~ 278 (319)
..-+|++|-.+
T Consensus 95 -~~~~iiaNE~~ 105 (252)
T PF02636_consen 95 -FPGFIIANELF 105 (252)
T ss_dssp -CCEEEEEESSG
T ss_pred -CCEEEEEeeeh
Confidence 23455555443
No 454
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=90.30 E-value=0.74 Score=39.71 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=35.9
Q ss_pred CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185 (319)
Q Consensus 146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~ 185 (319)
.++|.++||+=+|||.++++|..-||.+++.+|.+.....
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~ 80 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVK 80 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHH
Confidence 4899999999999999999999999999999999854433
No 455
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.11 E-value=0.67 Score=42.02 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=55.2
Q ss_pred ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709 198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM 277 (319)
Q Consensus 198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~ 277 (319)
.+.++...+|+|+-.|.++..+.+++- .|++||..+|.+... .. ..|+-...|...+.......|..+|+.+
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 356788999999999999999999876 999999999533322 22 4677777777776544478999998764
No 456
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.94 E-value=0.77 Score=47.44 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=62.0
Q ss_pred cceeeccCCCchHHHHHHH-c-------C-----CCEEEEEecHH-HHHHHHH--------------HHHh-----cCC-
Q psy8709 203 KHVIDVGAGTGILSIFAAQ-A-------G-----AAKVFAIEKSD-IAYETID--------------IIRK-----NKY- 248 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~-~-------g-----~~~V~gvD~s~-~i~~a~~--------------~~~~-----~g~- 248 (319)
-+|+|+|-|+|.......+ . + .-+++++|..+ ..+...+ .... .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 5899999999987655442 1 1 23899999754 2212111 1111 121
Q ss_pred -----CC--cEEEEEcCcccccc-CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 249 -----DS--QIEVYHKLLEDVEL-PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 249 -----~~--~i~~i~~d~~~~~~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
.. ++++..||+.+.-. -...||+++.++....-..+---..+++.+.++++|||.+.
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 01 45567788765421 12569999987643221222223678999999999999988
No 457
>KOG1271|consensus
Probab=89.90 E-value=0.47 Score=40.78 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=30.1
Q ss_pred eEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709 151 HVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 151 ~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~ 186 (319)
+|||+|||+|.+-...++-| ...+.|+|..+.++..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 99999999999999999888 5559999987654443
No 458
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.80 E-value=0.55 Score=39.43 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=58.2
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCcc-ccccCCCceeEEEeccch
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLE-DVELPVESVDIIISEWMG 278 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~-~~~~~~~~fD~Iis~~~~ 278 (319)
+++.+-+|...-..-..+.+.|++++..+|.++ -++.- +.+++. +...|+. +...-.++||.+.|-...
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~--------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE--------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc--------cccccccccHHHHHHHHHHhhccchhhheechh
Confidence 467788888887777788888999999999887 22111 001111 1111111 111123678888764332
Q ss_pred hhh---------cchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 279 YFL---------LFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 279 ~~l---------~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
.+. .+..+ .+.+.++.++|||||.+++..
T Consensus 74 Eh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred ccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEe
Confidence 111 11223 345678889999999999654
No 459
>KOG2078|consensus
Probab=89.80 E-value=0.39 Score=46.27 Aligned_cols=88 Identities=23% Similarity=0.231 Sum_probs=65.9
Q ss_pred CceEEeeecCCCcccH--HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC
Q psy8709 171 AAKVFAIEKSGTPIRT--ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK 247 (319)
Q Consensus 171 a~~V~avd~d~~~~~~--~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g 247 (319)
....+-.|.....|.+ ....+.+.. -..+|..|-|+.||.|-++..++..+ +.|++-|.++ +++....+++.|.
T Consensus 219 ~~~~Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNk 295 (495)
T KOG2078|consen 219 GGERFKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNK 295 (495)
T ss_pred CCeeEEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccc
Confidence 4444555555555554 223333333 35567899999999999999999987 5999999999 9999999999888
Q ss_pred CCCc-EEEEEcCccc
Q psy8709 248 YDSQ-IEVYHKLLED 261 (319)
Q Consensus 248 ~~~~-i~~i~~d~~~ 261 (319)
+.+. ++++..|+..
T Consensus 296 v~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 296 VDPSAIEIFNMDAKD 310 (495)
T ss_pred cchhheeeecccHHH
Confidence 8665 8888877644
No 460
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=89.68 E-value=0.48 Score=44.70 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG 181 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~ 181 (319)
...++++++|+||++|.++..+.+.|+ +|+|+|..+
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 357899999999999999999999998 999999654
No 461
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=89.58 E-value=0.42 Score=46.00 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=31.4
Q ss_pred CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR 185 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~ 185 (319)
.+..+||+|||+|.+.+.+|+. ....++|+|++.....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~ 160 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIE 160 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHH
Confidence 4679999999999999998855 4789999999865443
No 462
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.36 E-value=0.59 Score=45.88 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCCccc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIR 185 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~~~~ 185 (319)
....++.+|||+|||+|..++.++.. +..+++++|++..+..
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~ 289 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLK 289 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 34567899999999999999988854 3679999999865543
No 463
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.23 E-value=1.8 Score=42.79 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=51.5
Q ss_pred CcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcC-CCCcEEEEEcCccccccC---------------
Q psy8709 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNK-YDSQIEVYHKLLEDVELP--------------- 265 (319)
Q Consensus 202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g-~~~~i~~i~~d~~~~~~~--------------- 265 (319)
..+++|+-||.|.++.-+-..|...|.++|+++ .|.+..+.|- ..+....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~---~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK---HAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH---HHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhh
Confidence 358999999999999999888888889999999 3443343332 112344556677665321
Q ss_pred --CCceeEEEeccchh
Q psy8709 266 --VESVDIIISEWMGY 279 (319)
Q Consensus 266 --~~~fD~Iis~~~~~ 279 (319)
...+|+++..+++.
T Consensus 165 ~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQ 180 (467)
T ss_pred ccCCCCCEEEEcCCCC
Confidence 13589998877654
No 464
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=89.18 E-value=2.7 Score=35.47 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc-ccC---CCceeEEEecc
Q psy8709 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV-ELP---VESVDIIISEW 276 (319)
Q Consensus 201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~---~~~fD~Iis~~ 276 (319)
.+.+|+-|||=+-...+.-......+++-.|.+. +....+ .+ +|+.-|.... .++ .++||+|++++
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 3468999998887665554223445899999998 111111 23 3444444332 111 37999999999
Q ss_pred chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~ 311 (319)
++ ..++-..++...+..++++++.++..+...
T Consensus 95 PF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 95 PF---LSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CC---CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 96 455667777788888889999998776543
No 465
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=0.92 Score=42.99 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=44.9
Q ss_pred EEeeecCCCcccHHHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHHc---------CCCEEEEEecHH-HHHHHH
Q psy8709 174 VFAIEKSGTPIRTESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQA---------GAAKVFAIEKSD-IAYETI 240 (319)
Q Consensus 174 V~avd~d~~~~~~~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s~-~i~~a~ 240 (319)
+++++++..- -+.+..++++. ...+..-.++|+|+|+|.++.-+++. ...++.-|++|+ ....-+
T Consensus 49 iTApels~lF--Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 49 ITAPELSQLF--GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred eechhHHHHH--HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 4555544211 13334444444 33444568999999999998776652 256899999999 766666
Q ss_pred HHHHhc
Q psy8709 241 DIIRKN 246 (319)
Q Consensus 241 ~~~~~~ 246 (319)
++++..
T Consensus 127 ~~L~~~ 132 (370)
T COG1565 127 ETLKAT 132 (370)
T ss_pred HHHhcc
Confidence 666543
No 466
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=88.76 E-value=0.55 Score=44.73 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=29.3
Q ss_pred CeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 150 ~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.++||++||+|.+++..++.. ..|+++|.+......
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~ 234 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNA 234 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence 469999999999999777654 699999998655443
No 467
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.73 E-value=0.71 Score=44.11 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCC
Q psy8709 134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171 (319)
Q Consensus 134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga 171 (319)
.....+|..-.++.++..++|..||||.+.|+||..++
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~ 214 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAA 214 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhcc
Confidence 34566777778888999999999999999999998874
No 468
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.71 E-value=2.1 Score=42.85 Aligned_cols=101 Identities=23% Similarity=0.207 Sum_probs=58.9
Q ss_pred cCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC--------cccc--c--
Q psy8709 199 LFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL--------LEDV--E-- 263 (319)
Q Consensus 199 ~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d--------~~~~--~-- 263 (319)
..++.+|+=+||| .|..+...++ .|+ .|+++|.++ .++.++ ..|- ..+.+-..+ +... .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~ae----slGA-~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVE----SMGA-EFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH----HcCC-eEEEeccccccccccchhhhcchhHH
Confidence 3457899999999 5667777777 576 899999999 555444 3332 111110000 0000 0
Q ss_pred ------cC--CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709 264 ------LP--VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR 308 (319)
Q Consensus 264 ------~~--~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 308 (319)
+. ...+|+||..... .....+..+.+++.+.+||||+++.-.
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 01 1469999964321 111122233488888999999988433
No 469
>KOG3924|consensus
Probab=88.70 E-value=1.6 Score=41.71 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=74.0
Q ss_pred HHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHH-------HHhcCC-CCcEEEEEc
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDI-------IRKNKY-DSQIEVYHK 257 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~-------~~~~g~-~~~i~~i~~ 257 (319)
+-...+.+.+...++....|+|.|.|.+..+.+. .+...=+|+++.+ ..+.+..+ .+..|. ...+..+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 3344556667888889999999999999888777 4666778888766 44343322 222233 356788888
Q ss_pred Ccccccc---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709 258 LLEDVEL---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305 (319)
Q Consensus 258 d~~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 305 (319)
++.+... -....++|++|.+- +.+.+..=+.++..-+++|-+++
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~----Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVA----FDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEeccc----CCHHHHHhhHHHHhhCCCcceEe
Confidence 8866431 12567899987652 22333333446667778887766
No 470
>KOG2915|consensus
Probab=88.62 E-value=2 Score=39.25 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~ 186 (319)
.|..-..+.||.+|+..|+|||.++-+.++. + ..+++..|++..+...
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~k 145 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEK 145 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHH
Confidence 4555667889999999999999998887744 3 7899999997654433
No 471
>PRK00811 spermidine synthase; Provisional
Probab=88.61 E-value=0.53 Score=43.38 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~ 186 (319)
++++||++|||+|.++..+.+. +..+|.++|+++.....
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~ 115 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEV 115 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHH
Confidence 4689999999999999988876 67899999999754443
No 472
>KOG2912|consensus
Probab=88.57 E-value=1.4 Score=41.12 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=52.8
Q ss_pred eeeccCCCchHHHHH-HHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-------cCCCceeEEEec
Q psy8709 205 VIDVGAGTGILSIFA-AQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-------LPVESVDIIISE 275 (319)
Q Consensus 205 VLDiGcGtG~ls~~l-a~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-------~~~~~fD~Iis~ 275 (319)
=+|||.|.-.+--.+ ++...-...++|+.+ ....|..++.++++.+.+.+++....... .++..||.+.||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 378887765443222 222234889999999 88999999999999888888876432211 123569999999
Q ss_pred cchh
Q psy8709 276 WMGY 279 (319)
Q Consensus 276 ~~~~ 279 (319)
++++
T Consensus 186 PPFf 189 (419)
T KOG2912|consen 186 PPFF 189 (419)
T ss_pred Cchh
Confidence 9865
No 473
>KOG1541|consensus
Probab=88.49 E-value=0.49 Score=41.88 Aligned_cols=38 Identities=16% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
...-+||+|||||+-+-....-| ....++|+++.....
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ 87 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence 57799999999999988887777 778899998654443
No 474
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.46 E-value=1.7 Score=37.15 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred cHHHHHHHHhcccccCCCc-ceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCC--CCcEEEEEcCcc
Q psy8709 185 RTESYKSAILNNKSLFNNK-HVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKY--DSQIEVYHKLLE 260 (319)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~-~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~--~~~i~~i~~d~~ 260 (319)
++..+-+.+.+.+...++. .|+.+|||--.....+... +...++-+|..++++.-++.+...+. ..+.+++..|+.
T Consensus 61 Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 140 (183)
T PF04072_consen 61 RTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLR 140 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TT
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEecccc
Confidence 3444445555555444444 8999999998888888774 35689999998866666666655532 123567889987
Q ss_pred ccc---------cCCCceeEEEeccchhhhcchhhHHHHHHHH
Q psy8709 261 DVE---------LPVESVDIIISEWMGYFLLFETMIDSVIDAR 294 (319)
Q Consensus 261 ~~~---------~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~ 294 (319)
+.. +.....-+++++.+.+++.. +....+++.+
T Consensus 141 ~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~-~~~~~ll~~i 182 (183)
T PF04072_consen 141 DDSWIDALPKAGFDPDRPTLFIAEGVLMYLSP-EQVDALLRAI 182 (183)
T ss_dssp SHHHHHHHHHCTT-TTSEEEEEEESSGGGS-H-HHHHHHHHHH
T ss_pred chhhHHHHHHhCCCCCCCeEEEEcchhhcCCH-HHHHHHHHHh
Confidence 542 22356678888888777644 5556666544
No 475
>PRK11677 hypothetical protein; Provisional
Probab=88.37 E-value=1.2 Score=36.24 Aligned_cols=55 Identities=9% Similarity=0.206 Sum_probs=43.2
Q ss_pred HhhHHHHhhhhhhhhcccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8709 41 QAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKK 96 (319)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 96 (319)
-|++++|+-.+|-.+...+ .+|...+-.+++++|++.++++++||+++.+-..++
T Consensus 5 ~a~i~livG~iiG~~~~R~-~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~T 59 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRF-GNRKLRQQQALQYELEKNKAELEEYRQELVSHFARS 59 (134)
T ss_pred HHHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777777776 445557789999999999999999999987755443
No 476
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.20 E-value=1.2 Score=41.56 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=72.6
Q ss_pred cceeeccCC-CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709 203 KHVIDVGAG-TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF 280 (319)
Q Consensus 203 ~~VLDiGcG-tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~ 280 (319)
.+|.-+|.| -|..+..++--...+|+-+|.|. -+.+..... ..+++..-....++.....+.|++|..-.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaVL--- 240 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAVL--- 240 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEEE---
Confidence 467778877 46666666654345999999998 444433222 24678877777777655578999996543
Q ss_pred hcchhhHHHHHHHHhcccCCCcEEE-----------eecCcceeecccc
Q psy8709 281 LLFETMIDSVIDARNRFLKPDGVVC-----------PNRFTLSLCGAYA 318 (319)
Q Consensus 281 l~~~~~~~~~l~~~~r~LkpgG~li-----------~~~~t~~~~~~~~ 318 (319)
+.....+.-+.+++.+.+|||++++ -++.|.+-.|.|.
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~ 289 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYE 289 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCcee
Confidence 2444566677888899999999887 3355555566553
No 477
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=88.13 E-value=0.82 Score=44.65 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=34.3
Q ss_pred CCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~ 186 (319)
...++.+|||+|||+|..+..++. .+..+++++|++..+...
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~ 277 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR 277 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 456889999999999999998885 456799999998765443
No 478
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=88.03 E-value=0.72 Score=41.99 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=33.2
Q ss_pred CCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCccc
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIR 185 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~ 185 (319)
...++.+|||+|||+|..++.++. .+ ...|+++|++..+..
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~ 110 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTK 110 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 456889999999999999988774 43 568999999876544
No 479
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=87.91 E-value=0.52 Score=42.16 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCCCCCeEEEecCCCChhhHHHH--hcCCceEEeeecCCCc
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAA--QAGAAKVFAIEKSGTP 183 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa--~~ga~~V~avd~d~~~ 183 (319)
...++++||++|||+|.-++..+ ..++.+++++|+++..
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~ 105 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEA 105 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHH
Confidence 34578899999999998666554 3457899999998643
No 480
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.68 E-value=2.5 Score=38.49 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.2
Q ss_pred CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI 184 (319)
Q Consensus 148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~ 184 (319)
.+++||++|||+|.+...+.+.+ ..++..+|+++...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi 109 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI 109 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH
Confidence 45699999999999988877665 78899999986543
No 481
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=87.67 E-value=0.67 Score=44.27 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=29.6
Q ss_pred CeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 150 ~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~ 186 (319)
.++||++||+|.+++.+++. +.+|+++|.+......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~ 243 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA 243 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH
Confidence 56999999999999977754 5799999998765544
No 482
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.54 E-value=1.8 Score=41.04 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=55.0
Q ss_pred cccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc----c-ccCC
Q psy8709 195 NNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED----V-ELPV 266 (319)
Q Consensus 195 ~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~----~-~~~~ 266 (319)
......++.+||=.|+| .|.++..+++ .|..+|+++|.++ -.+.++ ..|.. .++...-.+ + ....
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~---~~i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGAT---ATVNAGDPNAVEQVRELTG 257 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCc---eEeCCCchhHHHHHHHHhC
Confidence 33456677888888875 4555566666 4666799999988 544443 34431 122211111 1 1112
Q ss_pred CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+.+|+|+-.. +. ...+....+.|+++|.++.
T Consensus 258 ~g~d~vid~~-G~--------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 258 GGVDYAFEMA-GS--------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCCCEEEECC-CC--------hHHHHHHHHHHhcCCEEEE
Confidence 3689998432 11 1234555678999999874
No 483
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.47 E-value=3.1 Score=38.36 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=55.8
Q ss_pred cccCCCcceeeccCC-CchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccCCCc
Q psy8709 197 KSLFNNKHVIDVGAG-TGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----ELPVES 268 (319)
Q Consensus 197 l~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~~~~~ 268 (319)
....++.+||..|+| .|..+..+++. |. +|++++.++ ..+.++ ..+. +. ++...-... ..+...
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~----~~g~-~~--~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAK----ELGA-DE--VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH----HhCC-CE--EEcCCCcCHHHHHHHhcCCC
Confidence 345667788888776 46677777774 54 799999988 554443 3343 11 111111111 123457
Q ss_pred eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
+|+++.... . ...+.++.+.|+++|.++.
T Consensus 233 ~D~vid~~g-----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 233 FDVIFDFVG-----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred ceEEEECCC-----C----HHHHHHHHHHhhcCCEEEE
Confidence 999985321 1 2356677789999999984
No 484
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.37 E-value=2.3 Score=40.07 Aligned_cols=93 Identities=23% Similarity=0.365 Sum_probs=52.3
Q ss_pred cCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEec---HHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709 199 LFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEK---SDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII 273 (319)
Q Consensus 199 ~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~---s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii 273 (319)
..++.+||-+|+| .|.++..+++ .|. +|++++. ++ .-.+.++..|. +.+.....+..+.. ....+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~---~~~~~~~~~Ga-~~v~~~~~~~~~~~-~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPD---PKADIVEELGA-TYVNSSKTPVAEVK-LVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCH---HHHHHHHHcCC-EEecCCccchhhhh-hcCCCCEEE
Confidence 4567889989886 4566666777 465 8999986 45 22233344443 11111111111111 124689988
Q ss_pred eccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
-..- . ...+....+.|++||.++.
T Consensus 244 d~~g-----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 244 EATG-----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred ECcC-----C----HHHHHHHHHHccCCcEEEE
Confidence 5321 1 1245666788999999874
No 485
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.36 E-value=2.4 Score=39.92 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred cccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----c-cCCC
Q psy8709 197 KSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----E-LPVE 267 (319)
Q Consensus 197 l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~-~~~~ 267 (319)
....++.+||-.|+| .|..+..+++ .|..+|+++|.++ ..+.+ +..|. + .++...-.+. . ....
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~Ga-~--~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REFGA-T--HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCC-c--eEEcCCCcCHHHHHHHHhCCC
Confidence 455678899988875 3455566666 4665799999988 54444 33443 1 1222111111 1 1223
Q ss_pred ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
.+|+|+-. .+ . ...+....+.|++||+++.
T Consensus 245 g~d~vid~-~g----~----~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 245 GADVVIDA-VG----R----PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCEEEEC-CC----C----HHHHHHHHHHhccCCEEEE
Confidence 58999842 21 1 1234455678999999884
No 486
>KOG0821|consensus
Probab=87.23 E-value=1.1 Score=39.73 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV 262 (319)
Q Consensus 188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~ 262 (319)
++.+.+..........-|.+||.|.|..+..+.+++..+...++.++ .+.-.+-...... .+..+.++|+..+
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 45566666666666688999999999999999999988999999998 6665544433322 4677778887554
No 487
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.19 E-value=2.4 Score=39.31 Aligned_cols=90 Identities=26% Similarity=0.333 Sum_probs=52.0
Q ss_pred CCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC---ccccccCCCceeEEEe
Q psy8709 201 NNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL---LEDVELPVESVDIIIS 274 (319)
Q Consensus 201 ~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d---~~~~~~~~~~fD~Iis 274 (319)
++.+||-.|||. |..+..+++ .|..++++++.++ ..+.+ +..+. + .++..+ ..........+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~----~~~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVA----RAMGA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH----HHcCC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 678888888764 555566666 4655899999887 54433 22333 1 122211 1111112245999985
Q ss_pred ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
.... ...+....+.|+++|.++.
T Consensus 238 ~~g~---------~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 238 ASGA---------PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred CCCC---------HHHHHHHHHHHhcCCEEEE
Confidence 3211 1235666788999999883
No 488
>KOG0820|consensus
Probab=87.04 E-value=1.2 Score=40.56 Aligned_cols=50 Identities=30% Similarity=0.397 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709 134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184 (319)
Q Consensus 134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~ 184 (319)
....+.|+....+.+++.||.+|-|||.++.-.-..| ++|.|+++|+...
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmv 93 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMV 93 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHH
Confidence 4445666777889999999999999999998766554 6899999997543
No 489
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.94 E-value=1.4 Score=41.42 Aligned_cols=74 Identities=24% Similarity=0.208 Sum_probs=54.2
Q ss_pred cceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC--C-ceeEEEeccchh
Q psy8709 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV--E-SVDIIISEWMGY 279 (319)
Q Consensus 203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~--~-~fD~Iis~~~~~ 279 (319)
.+++|+-||.|.+..-+...|+.-+.++|+++ .|.+..+.|.. ...++..|+....... . .+|+++..+++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~---~a~~ty~~n~~--~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP---PAVATYKANFP--HGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH---HHHHHHHHhCC--CCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 58999999999999999999988999999999 44444444422 2456667776553221 2 799999888765
Q ss_pred hh
Q psy8709 280 FL 281 (319)
Q Consensus 280 ~l 281 (319)
.+
T Consensus 79 ~F 80 (328)
T COG0270 79 DF 80 (328)
T ss_pred ch
Confidence 43
No 490
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=86.89 E-value=0.97 Score=44.40 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~ 186 (319)
....++++|||+|||+|..+..++.. + ...|+++|++..+...
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~ 290 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK 290 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence 34568899999999999999877743 3 5699999999866554
No 491
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.84 E-value=1.4 Score=39.00 Aligned_cols=92 Identities=25% Similarity=0.290 Sum_probs=53.8
Q ss_pred cCCCcceeeccCCC-chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccCCCceeE
Q psy8709 199 LFNNKHVIDVGAGT-GILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----ELPVESVDI 271 (319)
Q Consensus 199 ~~~~~~VLDiGcGt-G~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~~~~~fD~ 271 (319)
..++.+||..|+|. |.....+++....+|++++.++ ..+.++ ..+. . .++...-... ....+.+|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~----~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK----ELGA-D--HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH----HhCC-c--eeccCCcCCHHHHHHHhcCCCCCE
Confidence 36778999999985 6566666664335999999988 544443 2232 1 1111111111 112357999
Q ss_pred EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
++...... ..+....+.|+++|.++.
T Consensus 205 vi~~~~~~---------~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 205 VIDAVGGP---------ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEECCCCH---------HHHHHHHHhcccCCEEEE
Confidence 98643210 234556678899999884
No 492
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=86.34 E-value=0.95 Score=43.60 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709 149 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT 186 (319)
Q Consensus 149 ~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~ 186 (319)
+.++||++||+|.+++.++. .++..|+++|+++.....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~ 96 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL 96 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 56899999999999999874 567899999998765543
No 493
>PRK08324 short chain dehydrogenase; Validated
Probab=86.31 E-value=28 Score=36.11 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----c-----C
Q psy8709 200 FNNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----L-----P 265 (319)
Q Consensus 200 ~~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----~-----~ 265 (319)
.+++++|-.|++.| .+...+++.|. +|+.+|.++ .++.+.+.+... .++.++..|+.+.. + .
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35678888886444 22333444566 899999988 555544433322 46788888876542 1 1
Q ss_pred CCceeEEEecc
Q psy8709 266 VESVDIIISEW 276 (319)
Q Consensus 266 ~~~fD~Iis~~ 276 (319)
.+.+|+||.+.
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 24689998764
No 494
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.25 E-value=6.5 Score=35.78 Aligned_cols=65 Identities=25% Similarity=0.391 Sum_probs=43.2
Q ss_pred cCCCcceeeccCCCchHHHHHHHc------CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709 199 LFNNKHVIDVGAGTGILSIFAAQA------GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263 (319)
Q Consensus 199 ~~~~~~VLDiGcGtG~ls~~la~~------g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~ 263 (319)
+.+...++|+|||.|.++..++.. +...++.||-...-.++-..+........++=+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 455678999999999999998884 24588999987611133333433332135666777877764
No 495
>KOG2920|consensus
Probab=85.81 E-value=0.6 Score=42.73 Aligned_cols=109 Identities=27% Similarity=0.344 Sum_probs=62.1
Q ss_pred CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHH-HHHHHHH--------hcCCCCcEEEEEcCcccccc-CCC-
Q psy8709 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAY-ETIDIIR--------KNKYDSQIEVYHKLLEDVEL-PVE- 267 (319)
Q Consensus 200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~-~a~~~~~--------~~g~~~~i~~i~~d~~~~~~-~~~- 267 (319)
..+++|||+|||.|...+.+...+...+...|.+. .++ ....++. .+....-..+......+..+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 34689999999999999999998877888888888 441 1111110 00000111222221111111 112
Q ss_pred -ceeEEEeccchhhhcchhhHHHH-HHHHhcccCCCcEEEeecCcc
Q psy8709 268 -SVDIIISEWMGYFLLFETMIDSV-IDARNRFLKPDGVVCPNRFTL 311 (319)
Q Consensus 268 -~fD~Iis~~~~~~l~~~~~~~~~-l~~~~r~LkpgG~li~~~~t~ 311 (319)
.||+|.+.-..|-. .....+ ......+++++|+++...-..
T Consensus 195 ~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~aAK~~ 237 (282)
T KOG2920|consen 195 THYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVAAKKL 237 (282)
T ss_pred cchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhhhHhh
Confidence 78888876554433 333333 556677889999887544333
No 496
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=85.80 E-value=1.3 Score=41.15 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~~~ 186 (319)
...++.+++|.+||.|..+...+... ..+|+|+|.|+.....
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence 34578899999999999999988654 5899999999765544
No 497
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=85.42 E-value=1.2 Score=43.57 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=34.2
Q ss_pred CCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709 145 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 145 ~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~ 186 (319)
...++.+|||+|||+|..++.++.. + ...|+++|++..+...
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~ 277 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL 277 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence 4568899999999999999888754 3 6799999998765443
No 498
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=85.16 E-value=1.4 Score=43.19 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=34.2
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT 186 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~ 186 (319)
....++.+|||+|||+|..+..++.. + ..+|+++|++..+...
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~ 292 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKK 292 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHH
Confidence 34568899999999999999988754 3 5699999998655443
No 499
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.92 E-value=0.9 Score=40.48 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709 144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP 183 (319)
Q Consensus 144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~ 183 (319)
....+-+++||+|||||+.+...-. -+.++.|+|++...
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~-~a~~ltGvDiS~nM 159 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRD-MADRLTGVDISENM 159 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHH-HHhhccCCchhHHH
Confidence 3344468999999999998865442 24567788887543
No 500
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=84.77 E-value=3.9 Score=38.33 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=53.2
Q ss_pred cCCCcceeeccCC-CchHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709 199 LFNNKHVIDVGAG-TGILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS 274 (319)
Q Consensus 199 ~~~~~~VLDiGcG-tG~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis 274 (319)
..++.+||-+||| .|.++..+++ .|..+|+++|.++ -++.+++ .+. ...+ .+.. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 4568899999986 4455555555 3566899999998 5555542 221 1111 1111 1124899984
Q ss_pred ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709 275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306 (319)
Q Consensus 275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 306 (319)
..-+ ......+....++|++||.++.
T Consensus 229 ~~G~------~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGG------RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCC------CccHHHHHHHHHhCcCCcEEEE
Confidence 3211 1123456667789999999874
Done!