RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8709
(319 letters)
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 65.5 bits (160), Expect = 1e-13
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH-KLLEDVE 263
V+D+G GTG L++ A A+V ++ S +A E +EV E
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
ES D+IIS+ + L+ + + ++ R LKP GV+
Sbjct: 62 EADESFDVIISDPPLHHLVED--LARFLEEARRLLKPGGVL 100
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 59.6 bits (145), Expect = 3e-10
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLLEDVE 263
V+DVG G+GIL+I A + GA KV ++ +A + N ++Q+EVY L D
Sbjct: 164 VLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY--LPGD-- 219
Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
LP D++++ +L + +I+ D +KP G
Sbjct: 220 LPEGKADVVVAN-----ILADPLIELAPDI-YALVKPGG 252
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAI 177
V+DVG G+GIL+I A + GA KV +
Sbjct: 164 VLDVGCGSGILAIAALKLGAKKVVGV 189
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 54.6 bits (132), Expect = 1e-09
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKN---KYDSQIEVYHK 257
V+D+G GTG L+I A+ A+V ++ S E +++ R+N +I
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSP---EMLELARENAKLALGPRITFVQG 58
Query: 258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
D +E D + G ++D++ LKP G +
Sbjct: 59 DAPDALDLLEGFDAVFI--GGGGGDLLELLDALASL----LKPGGRL 99
Score = 39.6 bits (93), Expect = 2e-04
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 149 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVID 207
V+D+G GTG L+I A+ A+V ++ S + + + I
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEML-------ELARENAKLALGPRIT 54
Query: 208 VGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK 245
G G VF E +D +
Sbjct: 55 FVQGD-APDALDLLEGFDAVFIGGGGGDLLELLDALAS 91
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 49.4 bits (118), Expect = 1e-07
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLLED 261
V+D GAG+G + AA+AG A+V +E A + ++ V +
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDARE 62
Query: 262 V-ELPVESVDIII-----SEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ ELP S D+++ G + D + A R LKP GV+
Sbjct: 63 LLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVL 111
Score = 33.2 bits (76), Expect = 0.050
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 151 HVIDVGAGTGILSIFAAQAGA-AKVFAIE 178
V+D GAG+G + AA+AG A+V +E
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDARVVGVE 31
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 51.4 bits (123), Expect = 1e-07
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264
D+GAG+GILS+ AA A A +V AIEK + D EV D +
Sbjct: 36 FADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD- 93
Query: 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306
E+ D++I E + L+ E + VI+A FL+ D + P
Sbjct: 94 -FENADVVICEMLDTALIEEKQV-PVINAVLEFLRYDPTIIP 133
Score = 39.5 bits (92), Expect = 0.001
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 123 HAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
H ++++D R + SAI + D+GAG+GILS+ AA A A +V AIEK
Sbjct: 11 HLDLLRDVERLAVFTSAI----AEVAEDTFADLGAGSGILSVVAAHA-AERVIAIEK 62
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 50.5 bits (122), Expect = 3e-07
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
K + K V+DVG G+GIL+I AA+ GA KV A++ A E + N + + +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174
Query: 256 HKLLEDVELPVESVDIII 273
L+ D+I+
Sbjct: 175 QGDLK--------ADVIV 184
Score = 46.3 bits (111), Expect = 6e-06
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
+ K V+DVG G+GIL+I AA+ GA KV A+
Sbjct: 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAV 148
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 50.0 bits (120), Expect = 5e-07
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHK 257
L K V+DVG G+GIL+I AA+ GA KV ++ A E + R N + ++
Sbjct: 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219
Query: 258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
LL +V D+I++ +L E + + R LKP G +
Sbjct: 220 LLLEV-PENGPFDVIVAN-----ILAEV-LVELAPDIKRLLKPGGRL 259
Score = 42.7 bits (101), Expect = 1e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
L K V+DVG G+GIL+I AA+ GA KV +
Sbjct: 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGV 191
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 46.1 bits (110), Expect = 9e-07
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 206 IDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265
+DVG GTG+L+ A+ G A+V + D++ E + + RK + ED+ P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV---DLSPEMLALARKRA---PRKFVVGDAEDLPFP 54
Query: 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
ES D+++S + L + + R LKP G +
Sbjct: 55 DESFDVVVSSLV---LHHLPDPERALREIARVLKPGGKLV 91
Score = 32.2 bits (74), Expect = 0.058
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 153 IDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+DVG GTG+L+ A+ G A+V ++ S
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLS 28
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 48.1 bits (115), Expect = 1e-06
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 178 EKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAY 237
E+ TP +Y + + K V+D+GAGTGIL+I AA GA++V A+ DI
Sbjct: 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAV---DIDP 78
Query: 238 ETIDIIRKN--KYDSQIEVYHKLLEDVELPVESV 269
E ++I R N + +E + D ++V
Sbjct: 79 EALEIARANAEELLGDVEFVVADVSDFRGKFDTV 112
Score = 41.5 bits (98), Expect = 2e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
K V+D+GAGTGIL+I AA GA++V A++
Sbjct: 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVD 75
>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 445
Score = 48.8 bits (117), Expect = 2e-06
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 183 PIRTESYKSAI-------LNNKSLFNNKHVIDV-GAGTGIL---SIFAAQ-AG-AAKVFA 229
P++ + Y+ AI + K ++ VI V GAG G L ++ AA+ G K++A
Sbjct: 160 PVKYDQYERAIRKALLDRVPEKKKTSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIYA 219
Query: 230 IEKSDIAYETID-IIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL---LFET 285
+EK+ A T+ + ++ ++ + + + + P E DI++SE +G F L
Sbjct: 220 VEKNPNAVVTLQKRVNFEEWGDKVTIISSDMREWKGP-EKADILVSELLGSFGDNELSPE 278
Query: 286 MIDSVIDARNRFLKPDGVVCPNRFT 310
+D RFLKPDG+ P +T
Sbjct: 279 CLDGA----QRFLKPDGISIPQSYT 299
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 47.7 bits (114), Expect = 2e-06
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI 242
P+R Y + + V+DVG G GILS A+ G A V I D + + I++
Sbjct: 42 PLR-LDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGI---DASEKPIEV 96
Query: 243 IRKNKYDS--QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP 300
+ + +S I+ +ED+ D++ + L +S + A + +KP
Sbjct: 97 AKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV---LEHVPDPESFLRACAKLVKP 153
Query: 301 DGVV---CPNRFTLSLCGA 316
G++ NR + A
Sbjct: 154 GGILFLSTINRTLKAYLLA 172
Score = 35.8 bits (83), Expect = 0.019
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186
Y + V+DVG G GILS A+ G A V I+ S PI
Sbjct: 45 LDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEV 96
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 46.1 bits (110), Expect = 4e-06
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETID 241
P+ E ++ L+ L KH+IDVGAGTG +SI AA Q + +V AIE++ A +
Sbjct: 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDA---LR 69
Query: 242 IIRKNK 247
+I++N+
Sbjct: 70 LIKENR 75
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEK 179
M K+ VR + L+ L KH+IDVGAGTG +SI AA Q + +V AIE+
Sbjct: 14 MTKEEVRALA-----LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIER 63
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 43.9 bits (104), Expect = 7e-06
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLLEDV 262
++D+G GTG + A+AG + V + DI+ E +++ ++ ++ D+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGV---DISKEALELAKERLRDKGPKVRFVVADARDL 57
Query: 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
S D++I + L + +++ R L+P G
Sbjct: 58 PFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
Score = 28.5 bits (64), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++D+G GTG + A+AG + V ++ S
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDIS 29
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 45.3 bits (108), Expect = 8e-06
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 180 SGTPIR--TESYKSAILN--NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDI 235
G R T+ + A+ N V+D+ AG+G L + A GAA+V +EK
Sbjct: 18 DGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK 77
Query: 236 AYETIDIIRKN 246
A + I+++N
Sbjct: 78 AVK---ILKEN 85
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 145 SLFN--------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+LFN V+D+ AG+G L + A GAA+V +EK
Sbjct: 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD 75
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 45.3 bits (108), Expect = 9e-06
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYETIDIIRKNKYD---SQIEVYH 256
+ D+GAGTG ++I A AG + +V AIE+ + E +++I +N +EV
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE---EALELIERNAARFGVDNLEVVE 90
Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
+ + S D I F+ I+ +++A LKP G + N TL
Sbjct: 91 GDAPEALPDLPSPDAI-------FIGGGGNIEEILEAAWERLKPGGRLVANAITL 138
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186
+ D+GAGTG ++I A AG + +V AIE+ +
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALEL 73
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 44.9 bits (107), Expect = 1e-05
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNK-YDSQIEVYH-K 257
V++VG G+GI++I AA+ G KV ++ + A E + N ++ +EV
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD 81
Query: 258 LLEDVE-------------LPVESVDIIISEWMGYFLL-----FETMIDSVIDARNRFLK 299
L E LP E + +W+ Y L E ID +D R+LK
Sbjct: 82 LFEPFRGDKFDVILFNPPYLPTEEEE-EWDDWLNYALSGGKDGREV-IDRFLDEVGRYLK 139
Query: 300 PDGVV 304
P G +
Sbjct: 140 PGGRI 144
Score = 36.4 bits (85), Expect = 0.008
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 18/61 (29%)
Query: 118 EDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
ED+ + AE D V++VG G+GI++I AA+ G KV +
Sbjct: 10 EDSFLLAENAVDK-----------------KGDRVLEVGTGSGIVAIVAAKNG-KKVVGV 51
Query: 178 E 178
+
Sbjct: 52 D 52
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 45.8 bits (109), Expect = 1e-05
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 203 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVYHK 257
K ++D+G G+G ++I A+ G A+V A DI+ + + + R+N + V
Sbjct: 112 KRILDLGTGSGAIAIALAKEGPDAEVIA---VDISPDALALARENAERNGLVRVLVVQSD 168
Query: 258 LLEDVELPVESVDIIIS 274
L E + D+I+S
Sbjct: 169 LFEPLR---GKFDLIVS 182
Score = 34.6 bits (80), Expect = 0.055
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKS 180
K ++D+G G+G ++I A+ G A+V A++ S
Sbjct: 112 KRILDLGTGSGAIAIALAKEGPDAEVIAVDIS 143
>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 183
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 197 KSLFN---------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
++LFN V+D+ AG+G L + A GAA V +EK A +++N
Sbjct: 30 EALFNILAPYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDKKAVA---TLKEN 85
Score = 38.0 bits (89), Expect = 0.002
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 145 SLFN---------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+LFN V+D+ AG+G L + A GAA V +EK
Sbjct: 31 ALFNILAPYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKD 75
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 45.2 bits (108), Expect = 2e-05
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN---K 247
L L V+D+G G+G +++ A + A+V A++ S A + R+N
Sbjct: 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALA---VARRNAKHG 155
Query: 248 YDSQIEVYHK-LLEDVELPVESVDIIIS 274
+++E E LP D+I+S
Sbjct: 156 LGARVEFLQGDWFE--PLPGGRFDLIVS 181
Score = 30.9 bits (71), Expect = 0.80
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 139 AILNNNSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKS 180
L L V+D+G G+G +++ A + A+V A++ S
Sbjct: 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS 141
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 44.8 bits (106), Expect = 2e-05
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI----EVYHKL 258
K+VIDVG G+GILSI A + GAAKV I DI ++ RKN +Q+ +V
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGI---DIDPLAVESARKNAELNQVSDRLQVKLIY 217
Query: 259 LED-VELPVESVDIII 273
LE +E D+I+
Sbjct: 218 LEQPIEGK---ADVIV 230
Score = 40.2 bits (94), Expect = 8e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
K+VIDVG G+GILSI A + GAAKV I+
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGID 189
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 44.2 bits (105), Expect = 3e-05
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
A+L K +F V+D+G GTG L+ + A+ A DI+ + K K
Sbjct: 25 ALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIAN---DISAGML-AQAKTKLSE 80
Query: 251 QIEVYHKLLEDVELPVESVDIIIS----EWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
++ E + L S D+I+S +W + R LKP G++
Sbjct: 81 NVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL-------SQALSELARVLKPGGLLA 132
Score = 31.9 bits (73), Expect = 0.32
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 114 FNSYED-AHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILS 163
+Y+ A I EM K + A+L +F V+D+G GTG L+
Sbjct: 6 AKTYDRHAKIQREMAKRLL-------ALLKEKGIFIPASVLDIGCGTGYLT 49
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 43.4 bits (103), Expect = 5e-05
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 202 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHKLL 259
++D+GAG G L + AQ AK+ +E + A E + N + +I+V
Sbjct: 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE--- 101
Query: 260 EDVE-----LPVESVDIIIS 274
D++ L S D+II
Sbjct: 102 ADIKEFLKALVFASFDLIIC 121
Score = 34.1 bits (79), Expect = 0.055
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 149 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPI 184
++D+GAG G L + AQ AK+ +E
Sbjct: 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA 81
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 42.0 bits (99), Expect = 6e-05
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 202 NKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
V+D+G GTG L+ A+ A+V I+ S+ E I+ ++N E +
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISE---EAIEKAKENAKKLGYENVEFIQ 60
Query: 260 EDVE------LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
D+E L S D++IS L D V++ R LKP GV+
Sbjct: 61 GDIEELPQLQLEDNSFDVVISN---EVLNHLPDPDKVLEEIIRVLKPGGVLI 109
Score = 29.7 bits (67), Expect = 1.0
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 25/98 (25%)
Query: 149 NKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKSGTPIRTESYKSAILNNKSL-FNNKHV 205
V+D+G GTG L+ A+ A+V I+ S E+ + A N K L + N
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDIS-----EEAIEKAKENAKKLGYENVEF 58
Query: 206 IDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
I + + + + + D++
Sbjct: 59 I-----------------QGDIEELPQLQLEDNSFDVV 79
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 43.1 bits (102), Expect = 1e-04
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLE 260
+ V+D+ AG G SI A+ G KV+AI+ + A E + + IR NK + ++E
Sbjct: 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR 248
Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+V + D II MG + LK G++
Sbjct: 249 EVAPELGVADRII---MGLP----KSAHEFLPLALELLKDGGII 285
Score = 31.9 bits (73), Expect = 0.39
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
+ V+D+ AG G SI A+ G KV+AI+
Sbjct: 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDI 219
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 41.9 bits (99), Expect = 2e-04
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLED 261
++D+G G G L+I+AA+ V + S+ I + +EV + D
Sbjct: 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133
Query: 262 VELPVESVDIIIS----EWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
E E D I+S E +G D LKP G +
Sbjct: 134 FE---EPFDRIVSVGMFEHVGK-----ENYDDFFKKVYALLKPGGRM 172
Score = 31.5 bits (72), Expect = 0.50
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAI 177
++D+G G G L+I+AA+ V +
Sbjct: 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGV 101
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 39.2 bits (92), Expect = 4e-04
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 202 NKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETIDIIRKN--KYD-SQIEVYHK 257
+ D+GAGTG ++I AA +V+AIE++ E +D+I +N ++ S I +
Sbjct: 20 GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNP---EALDLIERNLRRFGVSNIVI--- 73
Query: 258 LLEDVELPVE----SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ D E D + G ++ +++A R L+P G +
Sbjct: 74 VEGDAPEAPEDLLPDPDAVFVGGSG------GLLQEILEAVERRLRPGGRI 118
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 149 NKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT 186
+ D+GAGTG ++I AA +V+AIE++ +
Sbjct: 20 GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDL 58
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 38.9 bits (91), Expect = 0.001
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDS 250
I ++ K V+D+GAG+G+++I AA+AGAA+V A DI IR N
Sbjct: 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAA---DIDPWLEQAIRLNAAANGV 127
Query: 251 QIEVYHKLLEDVELPVESVDIII 273
I H D+ + D+++
Sbjct: 128 SILFTH---ADLIGSPPAFDLLL 147
Score = 36.6 bits (85), Expect = 0.010
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
I ++ K V+D+GAG+G+++I AA+AGAA+V A +
Sbjct: 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAAD 109
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 37.0 bits (86), Expect = 0.002
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 206 IDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL----LE 260
+D+G GTG L +A + + DI+ ++ + + ++ L+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGV---DISPAALEAAAERLAALGLLDAVRVRLDVLD 57
Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
++L S D+++ L +V+ R LKP GV+
Sbjct: 58 AIDLDPGSFDVVV---ASNVLHHLADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 38.3 bits (90), Expect = 0.002
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
V+D+G G G+L A+ + DI ++ R N + +E D
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSP--DLEVTMVDINARALESARANLAANGLENGEVFWSD 89
Query: 262 V--ELPVESVDIIIS 274
+ + D+IIS
Sbjct: 90 LYSAVEPGKFDLIIS 104
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 149 NKHVIDVGAGTGILSIFAAQAG 170
V+D+G G G+L A+
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRS 53
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 38.4 bits (90), Expect = 0.002
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 204 HVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
V+DV GTG +++ A G +V + DI+ +++ R+ ++ ++ D
Sbjct: 54 KVLDVACGTGDMALLLAKSVGTGEVVGL---DISESMLEVAREKLKKKGVQNVEFVVGDA 110
Query: 263 E-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
E LP S D + + + L T ID + R LKP G +
Sbjct: 111 ENLPFPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153
Score = 29.5 bits (67), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 151 HVIDVGAGTGILSI-FAAQAGAAKVFAI 177
V+DV GTG +++ A G +V +
Sbjct: 54 KVLDVACGTGDMALLLAKSVGTGEVVGL 81
>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family. This
model represents a family of uncharacterized bacterial
proteins. Members are present in nearly every complete
bacterial genome, always in a single copy. PSI-BLAST
analysis shows homology to several families of
SAM-dependent methyltransferases, including ribosomal
RNA adenine dimethylases [Protein synthesis, tRNA and
rRNA base modification].
Length = 190
Score = 38.2 bits (89), Expect = 0.002
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI 240
SLFN H +D+ AG+G L + A GAA +E+ +T+
Sbjct: 40 SLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTL 89
Score = 35.5 bits (82), Expect = 0.020
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 145 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186
SLFN H +D+ AG+G L + A GAA +E+ +T
Sbjct: 40 SLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQT 88
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 38.8 bits (91), Expect = 0.002
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 202 NKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
V+D+G G G+L + A ++ AK + D+ ++ RKN + +E
Sbjct: 159 GGKVLDLGCGYGVLGLVLAKKSPQAK---LTLVDVNARAVESARKNLAANGVENTEVWAS 215
Query: 261 DVELPVE-SVDIIIS 274
++ PVE D+IIS
Sbjct: 216 NLYEPVEGKFDLIIS 230
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 37.5 bits (87), Expect = 0.002
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264
V+D+G GTGIL + G V ++ S A ++ + +D D +
Sbjct: 26 VLDIGCGTGILLRLLRERG-FDVTGVDPSPAA-----VLIFSLFD---------APDPAV 70
Query: 265 PVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
D+I + F + E + D +++ LKP GV+
Sbjct: 71 LAGKYDLITA-----FEVLEHLPDPPALLQQLRELLKPGGVL 107
Score = 27.8 bits (62), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184
V+D+G GTGIL + G V ++ S +
Sbjct: 26 VLDIGCGTGILLRLLRERG-FDVTGVDPSPAAV 57
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 38.1 bits (89), Expect = 0.003
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI 240
V+D+ G+G L++ AA AGA V A++ S A +
Sbjct: 40 VLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSA 75
Score = 37.7 bits (88), Expect = 0.003
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
V+D+ G+G L++ AA AGA V A++ S
Sbjct: 40 VLDLCTGSGALAVAAAAAGAGSVTAVDIS 68
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 36.9 bits (86), Expect = 0.003
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKY 248
VIDVGA G S++ A+ GA +V A E AYE I+ +N
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYE---ILEENVK 43
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 151 HVIDVGAGTGILSIFAAQAGA-AKVFAIE 178
VIDVGA G S++ A+ GA +V A E
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFE 29
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 37.1 bits (87), Expect = 0.005
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK 245
++D G G G LSI A+ G AKV A SDI+ + ++ R+
Sbjct: 64 GLRILDAGCGVGSLSIPLARRG-AKVVA---SDISPQMVEEARE 103
Score = 35.6 bits (83), Expect = 0.020
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 123 HAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
H M DTV S+ L + ++D G G G LSI A+ G AKV A
Sbjct: 45 HQRMR-DTV--LSW----LPADGDLTGLRILDAGCGVGSLSIPLARRG-AKVVAS 91
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 36.9 bits (86), Expect = 0.008
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI 242
P+R + + I NK V+DVG G G+LS A+ GA V I+ S+ E +
Sbjct: 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKL 85
Query: 243 IRKNKYDSQIEVYHKLLEDV-ELPVESVDIIIS 274
K +IE +ED+ E +S D++
Sbjct: 86 HAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTC 118
Score = 32.7 bits (75), Expect = 0.18
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186
+R + + I N V+DVG G G+LS A+ GA V I+ S I
Sbjct: 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEV 82
>gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 245
Score = 36.5 bits (85), Expect = 0.010
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
K V+D+G+ TG + Q GA V+A++
Sbjct: 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
Score = 36.5 bits (85), Expect = 0.010
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
K V+D+G+ TG + Q GA V+A++
Sbjct: 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 36.3 bits (84), Expect = 0.011
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 177 IEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAA--QAGAAKVFAIEKSD 234
P+ E ++ L+ L ++D+G GTG +++ A+ KV+A++K +
Sbjct: 16 ERDEEIPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE 75
Query: 235 IAYETIDIIRKN 246
A I++ R+N
Sbjct: 76 KA---INLTRRN 84
Score = 29.4 bits (66), Expect = 2.1
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA--QAGAAKVFAIEKSGTP 183
M K+ +R + L+ L ++D+G GTG +++ A+ KV+A++K
Sbjct: 23 MTKEEIR-----ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKA 77
Query: 184 I---RTESYKSAILNN 196
I R + K +LNN
Sbjct: 78 INLTRRNAEKFGVLNN 93
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 36.0 bits (80), Expect = 0.015
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
V+D+G GTG L++ A G A V ++ S + ++
Sbjct: 49 GLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADAL 108
Query: 261 DVELPVE---SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
LP E S D++IS + + L + R LKP G +
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLL----PPAKALRELLRVLKPGGRL 151
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 36.0 bits (84), Expect = 0.018
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I+ + V+++G G G L+ A+ A KV+AIE
Sbjct: 21 IVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIEL 59
Score = 35.6 bits (83), Expect = 0.020
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I+ + V+++G G G L+ A+ A KV+AIE
Sbjct: 21 IVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIEL 59
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 35.5 bits (83), Expect = 0.022
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEV-YHKL 258
K V+DVG G GILS A+ G A V I D + E I++ R + +S +++ Y +
Sbjct: 47 LFGKRVLDVGCGGGILSESMARLG-ADVTGI---DASEENIEVARLHALESGLKIDYRQT 102
Query: 259 -LED-VELPVESVDIIISEWMGYFLLFETMI------DSVIDARNRFLKPDGVV 304
E+ D++ M E M+ S + A + +KP G+V
Sbjct: 103 TAEELAAEHPGQFDVVTC--M------E-MLEHVPDPASFVRACAKLVKPGGLV 147
Score = 31.7 bits (73), Expect = 0.38
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186
K V+DVG G GILS A+ G A V I+ S I
Sbjct: 47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEV 85
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 35.0 bits (81), Expect = 0.026
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 205 VIDVGAGTGILSIFAAQAGAAK-VFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLEDV 262
V+D+ AG G SI A+ AK V+A+E + A + + + I+ NK + I + DV
Sbjct: 104 VVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDV 163
Query: 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
L D +I M +D + R +K GV+
Sbjct: 164 ILEG-VADRVI---MNLPKSAHEFLDKAL----RAVKDGGVIH 198
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 35.1 bits (82), Expect = 0.031
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 201 NNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN--KY-DSQIEVYH 256
V+D+G G+G +++ A + A+V A++ S A + RKN + +E
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALA---VARKNAARLGLDNVEFLQ 143
Query: 257 -KLLEDVELPVESVDIIIS 274
E LP D+I+S
Sbjct: 144 SDWFEP--LPGGKFDLIVS 160
Score = 27.8 bits (63), Expect = 7.0
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 148 NNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSGTPIRT 186
V+D+G G+G +++ A + A+V A++ S +
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV 126
>gnl|CDD|147008 pfam04639, Baculo_E56, Baculoviral E56 protein, specific to ODV
envelope. This family represents the E56 protein, which
is localises to the occlusion derived virus (ODV)
envelope, but not to the budded virus (BV) envelope.
Length = 308
Score = 35.0 bits (81), Expect = 0.039
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 20/103 (19%)
Query: 72 NAEID--MRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHA-EMIK 128
A+I+ MRN D+ +R++ + N G + RR D + DA +H+ + K
Sbjct: 27 TADINRIMRNNDVVGIRNVFPNATNN---QINGLGQLRRAD-----NIPDATLHSLQTRK 78
Query: 129 DTV---------RTESYKSAILNNNSLFNNKHVIDVGAGTGIL 162
+ V RT LN N N+ AG L
Sbjct: 79 NAVKNNHPETNTRTPEGVENALNQNPRLNDYLQNLKTAGVVTL 121
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 33.9 bits (78), Expect = 0.070
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE--TIDIIRKNKYDSQIEVYHKLLE 260
+ V+D G G +I A + GA V +EK E ++ + ++ I++
Sbjct: 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195
Query: 261 DV--ELPVESVDIII 273
+V + ES D II
Sbjct: 196 EVVKDFDDESFDAII 210
>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 34.2 bits (79), Expect = 0.082
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNN 196
K V+++ + TG S+ AA GA++V +++ S + + ++A LN
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW-ARENAELNG 264
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
K V+++ + TG S+ AA GA++V +++ S A ++ R+N
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRA---LEWAREN 259
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 33.4 bits (77), Expect = 0.10
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSI-FAAQAGAA-KVFAIEKSDIAYETIDIIR 244
Y++ ++ V+DVG G G + A + G +V I++S+ + + +
Sbjct: 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE---AMLALAK 61
Query: 245 KNKYD--SQIEVYHKLLEDVELPVESVDIIISE 275
+ +E + + P S D + S+
Sbjct: 62 ERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94
Score = 27.6 bits (62), Expect = 7.3
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSI-FAAQAGAA-KVFAIEKS 180
Y++ ++ V+DVG G G + A + G +V I++S
Sbjct: 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRS 53
>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 380
Score = 33.5 bits (77), Expect = 0.13
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 203 KHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK---- 257
K V+D + TGI I +A + G KV + S A E I + EV +K
Sbjct: 54 KRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANA 113
Query: 258 LLEDVELPVESVDI 271
LL ++ + +DI
Sbjct: 114 LLHELHRAFDVIDI 127
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 33.3 bits (77), Expect = 0.13
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I+ ++ +V+++G G G L+ + AA+V AIE
Sbjct: 22 IVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEI 60
Score = 31.8 bits (73), Expect = 0.42
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I+ ++ +V+++G G G L+ + AA+V AIE
Sbjct: 22 IVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEI 60
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 33.0 bits (76), Expect = 0.14
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 152 VIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVG 209
V++ G G+G L+ + A+A V E IR + K+A N S F + +
Sbjct: 98 VLEAGTGSGALTAYLARAVGPEGHVTTYE-----IREDFAKTA-RENLSEFGLGDRVTLK 151
Query: 210 AG 211
G
Sbjct: 152 LG 153
Score = 31.1 bits (71), Expect = 0.64
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 205 VIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYET-IDIIRKNKYDSQIEVYHKLLED 261
V++ G G+G L+ + A+A V E + +T + + + ++ + + +
Sbjct: 98 VLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157
Query: 262 VELPVESVDIIISE----WMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
E VD + + W +++ V DA LKP GVV
Sbjct: 158 GIDE-EDVDAVFLDLPDPW--------NVLEHVSDA----LKPGGVVV 192
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 32.7 bits (75), Expect = 0.15
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 207 DVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKN 246
D+GAGTG + + A +V AIE+ + E +++IR+N
Sbjct: 46 DIGAGTGTIPVEAGLLCPKGRVIAIERDE---EVVNLIRRN 83
>gnl|CDD|129570 TIGR00478, tly, hemolysin TlyA family protein. Hemolysins are
exotoxins that attack blood cell membranes and cause
cell rupture, often by forming a pore in the membrane.
At least two members of this protein family have been
characterized indirectly as pore-forming hemolysins, one
from the spirochete Serpula (Treponema) hyodysenteriae
and one from Mycobacterium tuberculosis. However,
homology domains in this protein suggest
methyltransferase activity (pfam01728) and RNA-binding
activity (pfam01479) [Unknown function, General].
Length = 228
Score = 32.5 bits (74), Expect = 0.22
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
NK V+DVG+ TG + A Q GA +V+ ++
Sbjct: 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVD 105
Score = 32.5 bits (74), Expect = 0.22
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
NK V+DVG+ TG + A Q GA +V+ ++
Sbjct: 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVD 105
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 31.8 bits (73), Expect = 0.32
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 205 VIDVGAGTGILSIFAAQA-GA-AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
V+D+G+G G AA+ G KV + D+ E + R N + L ++
Sbjct: 81 VLDLGSGGGFDCFLAARRVGPTGKVIGV---DMTPEMLAKARANARKAGYTNVEFRLGEI 137
Query: 263 E-LPVE--SVDIIIS 274
E LPV SVD+IIS
Sbjct: 138 EALPVADNSVDVIIS 152
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 31.1 bits (71), Expect = 0.47
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 37/112 (33%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK-----NKYDSQ-- 251
+ K VID+G+G G I AI + ++ ++ K + ++
Sbjct: 40 YLDGKRVIDIGSGAGFPGI---------PLAIARPELKLTLLESNHKKVAFLREVKAELG 90
Query: 252 ---IEVYHKLLEDVELPVESVDIIIS----------EWM-------GYFLLF 283
+E+ + ED + E DII S E GYFL +
Sbjct: 91 LNNVEIVNGRAEDFQ-HEEQFDIITSRALASLNVLLELTLNLLKVGGYFLAY 141
Score = 27.6 bits (62), Expect = 5.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 146 LFNNKHVIDVGAGTGILSIFAA 167
+ K VID+G+G G I A
Sbjct: 40 YLDGKRVIDIGSGAGFPGIPLA 61
>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase.
Length = 170
Score = 30.8 bits (70), Expect = 0.53
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 200 FNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN------KYDSQI 252
+ +V+++G+GTG++ I A A V +D+ E I++++KN
Sbjct: 43 LSGLNVLELGSGTGLVGIAVALLLPGASVTI---TDLE-EAIELMKKNIELNGLSSKVTA 98
Query: 253 EVY---HKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+V L +DV VD+I++ Y E + N L + V+
Sbjct: 99 KVLDWGEDLPDDV-FDPHPVDLILAADCVY---NEDSFPLLEKTLNDLLGKETVI 149
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 31.0 bits (70), Expect = 0.56
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL 199
V+++GAGTG+++I G + + + ++ E ++A LNN L
Sbjct: 20 PDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVK-ELRENAKLNNVGL 68
Score = 27.5 bits (61), Expect = 6.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGA 224
V+++GAGTG+++I G
Sbjct: 20 PDDVLEIGAGTGLVAIRLKGKGK 42
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 30.7 bits (70), Expect = 0.56
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAY----ETIDIIRKNKYDSQIEVY 255
K V+D+GA G S + G A KV A+ D+ + + +R + D E
Sbjct: 22 KGKTVLDLGAAPGGFSQVLLERGGAGKVVAV---DLGPMEPIQGVYFLRGDITD--PETL 76
Query: 256 HKLLEDVELPVESVDIIIS 274
KL E + VD+++S
Sbjct: 77 EKLRELLP---GKVDLVLS 92
Score = 28.7 bits (65), Expect = 2.5
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAI 177
K V+D+GA G S + G A KV A+
Sbjct: 22 KGKTVLDLGAAPGGFSQVLLERGGAGKVVAV 52
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 31.3 bits (71), Expect = 0.64
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 34/119 (28%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
+ K V+++GAG G + A+ A +V A++ + +I+KN+ I ++K +
Sbjct: 36 YEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIE------SVIKKNE---SINGHYKNV 85
Query: 260 E---------DVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARNRFLKPDG 302
+ D+ + SVD+I S W+ +L L E M+ ++LK G
Sbjct: 86 KFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMV--------KWLKVGG 136
>gnl|CDD|129113 TIGR00001, rpmI_bact, ribosomal protein L35. This ribosomal
protein is found in bacteria and organelles only. It is
not closely related to any eukaryotic or archaeal
ribosomal protein [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 63
Score = 28.8 bits (65), Expect = 0.64
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
AAK F I SG R ++ K +L KS
Sbjct: 8 AAAKRFKITGSGKIKRKKAGKRHLLTKKS 36
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 31.1 bits (71), Expect = 0.67
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEK-SDIAYETIDIIRKN-KYD 249
I++ +L + V+++G G G L+ A +A +V AIE +A +++
Sbjct: 21 IVDKANLQESDTVLEIGPGKGALTTELAKRAK--QVVAIEIDPRLA----KRLQEKLALH 74
Query: 250 SQIEVYHK 257
+EV H+
Sbjct: 75 PNVEVVHQ 82
Score = 27.6 bits (62), Expect = 7.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIE 178
I++ +L + V+++G G G L+ A +A +V AIE
Sbjct: 21 IVDKANLQESDTVLEIGPGKGALTTELAKRAK--QVVAIE 58
>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
methyltransferase; Provisional.
Length = 382
Score = 31.0 bits (71), Expect = 0.68
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 205 VIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
V+D + +GI I +A + G KV + + A E +I+KN
Sbjct: 61 VLDALSASGIRGIRYALETGVEKVTLNDINPDAVE---LIKKN 100
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 30.5 bits (69), Expect = 0.92
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK 245
K K V+D G GTG+LSI A+ G A V A+ DI+ + + + R
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAV---DISEQMVQMARN 95
Score = 27.8 bits (62), Expect = 6.5
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
K V+D G GTG+LSI A+ G A V A++ S
Sbjct: 57 KRVLDAGCGTGLLSIELAKRG-AIVKAVDIS 86
>gnl|CDD|234676 PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.
Length = 65
Score = 28.2 bits (64), Expect = 0.93
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
GAAK F + SG R + K IL KS
Sbjct: 9 GAAKRFKVTGSGKVKRKHAGKRHILTKKS 37
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 30.5 bits (70), Expect = 0.97
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK-SDIAYETIDIIRKNKYDSQIEVYHK 257
+V+++G G G L+ + AAKV A+E D+ I+ + + + +
Sbjct: 42 PGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDL----APILAETFAEDNLTIIEG 94
Score = 30.1 bits (69), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
+V+++G G G L+ + AAKV A+E
Sbjct: 42 PGDNVLEIGPGLGALTEPLLER-AAKVTAVEI 72
>gnl|CDD|223368 COG0291, RpmI, Ribosomal protein L35 [Translation, ribosomal
structure and biogenesis].
Length = 65
Score = 28.4 bits (64), Expect = 0.99
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
GAAK F I +G R + K IL KS
Sbjct: 9 GAAKRFKITGTGKIKRKHAGKRHILTKKS 37
>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
Provisional.
Length = 347
Score = 30.6 bits (69), Expect = 1.2
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 149 NKHVIDVGAGT-GILSIFAAQA-GAAKVFAIE 178
K+VI +GAGT G+L+I A A GA V AI+
Sbjct: 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192
Score = 30.6 bits (69), Expect = 1.2
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 202 NKHVIDVGAGT-GILSIFAAQA-GAAKVFAIE 231
K+VI +GAGT G+L+I A A GA V AI+
Sbjct: 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 30.0 bits (68), Expect = 1.4
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 203 KHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKYDSQIE-----VYH 256
H++D+G G+G +++ A A+V A+ DI+ + + + +N +Q+E +
Sbjct: 116 LHILDLGTGSGCIALALAYEFPNAEVIAV---DISPDALAVAEENAEKNQLEHRVEFIQS 172
Query: 257 KLLEDVELPVESVDIIIS 274
L E L + +DII+S
Sbjct: 173 NLFEP--LAGQKIDIIVS 188
>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family.
Members of this family are methyltransferases that mark
a widely distributed large conserved gene neighborhood
of unknown function. It appears most common in soil and
rhizosphere bacteria.
Length = 226
Score = 30.1 bits (68), Expect = 1.4
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 28/107 (26%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKS----------------DIAYETIDIIRKN 246
V+D+G G SI + GA +V I+ DI + + +
Sbjct: 51 WSVLDIGCNAGFYSIEMKRRGAGRVLGIDSDPRYLAQARFAAEVLGADIEFRQMSVYDLG 110
Query: 247 KYDSQIEV-------YHKLLEDVELPVESVDIIISEWMGYFLLFETM 286
+ + ++ YH + P+ ++D++ G LLF+T+
Sbjct: 111 RLGERFDLVLFMGVLYH-----LRHPLLALDLLREHVAGDLLLFQTL 152
Score = 28.1 bits (63), Expect = 5.1
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVG 209
V+D+G G SI + GA +V I+ + + + +L F V D+G
Sbjct: 51 WSVLDIGCNAGFYSIEMKRRGAGRVLGIDSDPRYLAQARFAAEVLGADIEFRQMSVYDLG 110
Query: 210 AGTG 213
Sbjct: 111 RLGE 114
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 29.9 bits (68), Expect = 1.5
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIR-KNKYDSQIEVYHKL 258
F + V+DV GTG L+I A++ A + D + E +++ + K++ IE
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQAD 96
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
E + S D + + + L T I + R LKP G +
Sbjct: 97 AEALPFEDNSFDAVT---IAFGLRNVTDIQKALREMYRVLKPGGRL 139
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 29.6 bits (67), Expect = 1.7
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 21/97 (21%)
Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
S +L K V+D+G+G G I AI D+ ++ + K K
Sbjct: 55 LDSLVLLPYLDGKAKRVLDIGSGAGFPGI---------PLAIAFPDLKVTLLESLGK-KI 104
Query: 249 D-----------SQIEVYHKLLEDVELPVESVDIIIS 274
+E+ H E+ + D++ S
Sbjct: 105 AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS 141
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases;
Methyl transfer reactions play an important role in many
aspects of biology. Cytosine-specific DNA methylases are
found both in prokaryotes and eukaryotes. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the mammalian genome. These
effects include transcriptional repression via
inhibition of transcription factor binding or the
recruitment of methyl-binding proteins and their
associated chromatin remodeling factors, X chromosome
inactivation, imprinting and the suppression of
parasitic DNA sequences. DNA methylation is also
essential for proper embryonic development and is an
important player in both DNA repair and genome
stability.
Length = 275
Score = 29.9 bits (68), Expect = 1.7
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAG 211
VID+ AG G + +AG V A E + E+Y+ N + + +
Sbjct: 3 VIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA--ETYE---ANFPNKLIEGDITKIDEK 57
Query: 212 TGILSI------FAAQ----AGAAKVFAIEKSDIAYETIDIIRKNK 247
I I F Q AG K F + + +E I I+++ K
Sbjct: 58 DFIPDIDLLTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKK 103
Score = 27.6 bits (62), Expect = 9.2
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV-- 262
VID+ AG G + +AG V A E A ET + NK + + +
Sbjct: 3 VIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDE 56
Query: 263 ELPVESVDIII 273
+ + +D++
Sbjct: 57 KDFIPDIDLLT 67
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 29.0 bits (66), Expect = 1.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I+ +L V+++G G G L+ + A +V AIE
Sbjct: 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AKRVTAIEI 43
Score = 29.0 bits (66), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I+ +L V+++G G G L+ + A +V AIE
Sbjct: 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AKRVTAIEI 43
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 29.5 bits (67), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 202 NKHVIDVGAGT-GILSIFAAQA-GAAKVFAIEKSD 234
V+ +GAGT G+L+I + GA +V A++ D
Sbjct: 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDD 194
>gnl|CDD|165653 PLN00078, PLN00078, photosystem I reaction center subunit N (PsaN);
Provisional.
Length = 122
Score = 28.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 86 RHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYED 119
+ L+Q+ L K EE++E +N R D YY +Y+D
Sbjct: 58 KALLQEYLKKSEENKE-KNDKERLDDYYKRNYKD 90
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 29.4 bits (67), Expect = 2.3
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSDIAYETIDI----IRKNKYDSQI 252
+ V+D+ GTG L+I A+A +V + D + + + +R +
Sbjct: 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL---DFSEGMLAVGREKLRDLGLSGNV 105
Query: 253 EVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
E E + P S D + + + L ID + R LKP G +
Sbjct: 106 EFVQGDAEALPFPDNSFDAVT---IAFGLRNVPDIDKALREMYRVLKPGGRL 154
>gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 29.4 bits (66), Expect = 2.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIA 236
V D G GTG L+I A GA V A SDI+
Sbjct: 148 VCDAGCGTGSLAIPLALEGAI-VSA---SDIS 175
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.
Length = 320
Score = 29.2 bits (66), Expect = 2.6
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTES--YKSAILNNKSLFNNKHVIDVG 209
ID+ AG G + QAG V A E + +T + + + +L + K + D+
Sbjct: 3 FIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPKVPIGDITLIDIKDIPDI- 61
Query: 210 AGTGILSIFAAQ----AGAAKVFAIEKSDIAYETIDIIRKNK 247
+ F Q AG K F + + +E I II++ K
Sbjct: 62 --DILTGGFPCQDFSIAGKQKGFEDTRGTLFFEIIRIIKEKK 101
>gnl|CDD|145004 pfam01632, Ribosomal_L35p, Ribosomal protein L35.
Length = 61
Score = 26.9 bits (60), Expect = 3.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
AAK F SG R ++ K +L KS
Sbjct: 8 AAAKRFKRTASGKIKRRKAGKRHLLTKKS 36
>gnl|CDD|205163 pfam12958, DUF3847, Protein of unknown function (DUF3847). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 86
Score = 27.0 bits (60), Expect = 4.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 68 LEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRH 109
LE+ EI+ + + + +H + + N+ ++ E+GE K R H
Sbjct: 3 LEQLRQEIEKAEKKLRKEQHKEKRLQNQLKKLEKGERKERTH 44
>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase. L-threonine dehydrogenase
(TDH) catalyzes the zinc-dependent formation of
2-amino-3-ketobutyrate from L-threonine via NAD(H)-
dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria) and have 2 tightly bound
zinc atoms per subunit. Sorbitol and aldose reductase
are NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose.
Length = 341
Score = 28.7 bits (65), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 203 KHVIDVGAG-TGILSIFAAQA-GAAKVFAIEKSD 234
K V+ G G G+++I A+A GA+ V A + +
Sbjct: 165 KSVLITGCGPIGLMAIAVAKAAGASLVIASDPNP 198
>gnl|CDD|128580 smart00284, OLF, Olfactomedin-like domains.
Length = 255
Score = 28.3 bits (63), Expect = 4.8
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 113 YFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA--QAG 170
YFN + +H + + + TE+Y+ L N + +NN+ A G I A + G
Sbjct: 87 YFNKFN-SHD---ICRFDLTTETYQKEPLLNGAGYNNRFPY---AWGGFSDIDLAVDENG 139
Query: 171 AAKVFAIEKSGTPI---RTESYKSAILN------NKSLFNNKHVIDVGAGTGILSIFAA- 220
++A E++ I + I N NK +N +I GIL + +
Sbjct: 140 LWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMI-----CGILYVTRSL 194
Query: 221 QAGAAKVFAIEKSDIA-YETIDIIRKNKY 248
+ KVF ++ +DI +N Y
Sbjct: 195 GSKGEKVFYAYDTNTGKEGHLDIPFENMY 223
>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase
(7 alpha-HSDH), classical (c) SDRs. This bacterial
subgroup contains 7 alpha-HSDHs, including Escherichia
coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR
family, catalyzes the NAD+ -dependent dehydrogenation of
a hydroxyl group at position 7 of the steroid skeleton
of bile acids. In humans the two primary bile acids are
cholic and chenodeoxycholic acids, these are formed from
cholesterol in the liver. Escherichia coli 7 alpha-HSDH
dehydroxylates these bile acids in the human intestine.
Mammalian 7 alpha-HSDH activity has been found in
livers. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is not
generally found among SDRs.
Length = 242
Score = 28.3 bits (63), Expect = 4.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 205 VIDVGAGTGI---LSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
I G GI ++ A+AGA+ V A KS+ A I++
Sbjct: 2 AIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQA 46
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 28.5 bits (64), Expect = 5.5
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 73 AEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHAEM 126
A++ + I + +Q + D G KY D H H EM
Sbjct: 17 ADVLIEGGKIVAVGSNLQPPDAVEVIDATG--------KYVLPGGIDVHTHLEM 62
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 28.5 bits (64), Expect = 5.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 205 VIDVGAGTGILS--IFAAQAGAAKVFAIEKSD 234
VI +GAG +S +FAA AG KV +E+++
Sbjct: 19 VIVIGAGAAGMSAALFAAIAG-LKVLLVERTE 49
>gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit. RNA
polymerases catalyse the DNA dependent polymerization of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). Each RNA
polymerase complex contains two related members of this
family, in each case they are the two largest
subunits.The clamp is a mobile structure that grips DNA
during elongation.
Length = 866
Score = 28.3 bits (64), Expect = 7.4
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 19/87 (21%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQ 251
AI+ NKS +D G I + K + IE +I R + +
Sbjct: 495 AIIINKSS------VDRGFFRSI--HY-------KKYEIELRKTKNGPEEITRGDIPNVS 539
Query: 252 IEVYHKLLED----VELPVESVDIIIS 274
E L ED VE DI++
Sbjct: 540 EEKLKNLDEDGIIRPGARVEPGDILVG 566
>gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 328
Score = 27.8 bits (62), Expect = 7.7
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAG 211
VID+ AG G LS+ +AG VFA E P +YK+ + + + +D A
Sbjct: 6 VIDLFAGIGGLSLGFEEAGFEIVFANEID--PPAVATYKANFPHGDIILGDIKELDGEAL 63
Query: 212 TG-----ILSIFAAQ----AGAAKVFAIEKSDIAYETIDIIRKNK 247
++ Q AG + + + + E I +I + +
Sbjct: 64 RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLR 108
>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase. Putative
L-iditol 2-dehydrogenase based on annotation of some
members in this subgroup. L-iditol 2-dehydrogenase
catalyzes the NAD+-dependent conversion of L-iditol to
L-sorbose in fructose and mannose metabolism. This
enzyme is related to sorbitol dehydrogenase, alcohol
dehydrogenase, and other medium chain
dehydrogenase/reductases. The zinc-dependent alcohol
dehydrogenase (ADH-Zn)-like family of proteins is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. This group is
also called the medium chain dehydrogenases/reductase
family (MDR) to highlight its broad range of activities
and to distinguish from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal GroES-like catalytic
domain. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability. ADH-like
proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
generally have 2 tightly bound zinc atoms per subunit.
The active site zinc is coordinated by a histidine, two
cysteines, and a water molecule. The second zinc seems
to play a structural role, affects subunit interactions,
and is typically coordinated by 4 cysteines.
Length = 343
Score = 27.6 bits (62), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 205 VIDVGAG-TGILSIFAAQA-GAAKVFAIEKSD 234
V+ +GAG G+L A+A GA KV + ++
Sbjct: 169 VLVIGAGPIGLLHAMLAKASGARKVIVSDLNE 200
>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde
dehydrogenase related proteins, child 2.
Glutathione-dependent formaldehyde dehydrogenases (FDHs)
are members of the zinc-dependent/medium chain alcohol
dehydrogenase family. Formaldehyde dehydrogenase (FDH)
is a member of the zinc-dependent/medium chain alcohol
dehydrogenase family. FDH converts formaldehyde and NAD
to formate and NADH. The initial step in this process
the spontaneous formation of a
S-(hydroxymethyl)glutathione adduct from formaldehyde
and glutathione, followed by FDH-mediated oxidation (and
detoxification) of the adduct to S-formylglutathione.
These tetrameric FDHs have a catalytic zinc that resides
between the catalytic and NAD(H)binding domains and a
structural zinc in a lobe of the catalytic domain. The
medium chain alcohol dehydrogenase family (MDR) has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 344
Score = 27.6 bits (62), Expect = 8.3
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 155 VGAG-TGILSIFAAQA-GAAKVFAIE 178
+G G G+ ++ +AQ GAA+VFA++
Sbjct: 174 IGCGPVGLCAVLSAQVLGAARVFAVD 199
Score = 27.6 bits (62), Expect = 8.3
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 208 VGAG-TGILSIFAAQA-GAAKVFAIE 231
+G G G+ ++ +AQ GAA+VFA++
Sbjct: 174 IGCGPVGLCAVLSAQVLGAARVFAVD 199
>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated.
Length = 272
Score = 27.4 bits (61), Expect = 9.7
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 201 NNKHVIDVGAGTGI---LSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
NK + GA TGI +I AQ GA V A++ ++ ET+D I+ N
Sbjct: 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSN 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,170,581
Number of extensions: 1578245
Number of successful extensions: 2009
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1990
Number of HSP's successfully gapped: 185
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)