RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8709
(319 letters)
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 177 bits (449), Expect = 3e-53
Identities = 83/220 (37%), Positives = 112/220 (50%), Gaps = 53/220 (24%)
Query: 97 EEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVG 156
G + D YF+SY IH EM+KD +RTESY+ I N
Sbjct: 13 GLVPRGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQN------------- 59
Query: 157 AGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILS 216
+F +K V+DVG GTGILS
Sbjct: 60 ----------------------------------------PHIFKDKVVLDVGCGTGILS 79
Query: 217 IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW 276
+FAA+AGA KV +++S+I Y+ +DIIR NK + I + +E+V LPVE VD+IISEW
Sbjct: 80 MFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139
Query: 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGA 316
MGYFLLFE+M+DSV+ A+N++L G V P+ T+SL
Sbjct: 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAV 179
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 174 bits (441), Expect = 5e-52
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 54/231 (23%)
Query: 87 HLMQDMLNKKEEDEEGENKTRRHDK-YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNS 145
H M + E E N K YYF+SY IH E++KD VRT +Y++++ +N
Sbjct: 4 HDHHHMSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHN-- 61
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHV 205
+ LF +K V
Sbjct: 62 ---------------------------------------------------RHLFKDKVV 70
Query: 206 IDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265
+DVG+GTGIL +FAA+AGA KV IE S I+ + I++ NK D + + +E+VELP
Sbjct: 71 LDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP 130
Query: 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGA 316
VE VDIIISEWMGY L +E+M+++V+ AR+++L PDG++ P+R TL +
Sbjct: 131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAI 181
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 165 bits (419), Expect = 4e-49
Identities = 74/204 (36%), Positives = 106/204 (51%), Gaps = 53/204 (25%)
Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
YYF+SY+ IH EM++DTVRT SY++AI+ N
Sbjct: 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQN---------------------------- 33
Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
K LF +K V+DVG GTGILS+FAA+ GA V ++
Sbjct: 34 -------------------------KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVD 68
Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
S I +++ N + +I + LEDV LP VDIIISEWMGYFLL+E+M+D+V+
Sbjct: 69 MSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVL 128
Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
AR+ +L G++ P++ ++ L G
Sbjct: 129 YARDHYLVEGGLIFPDKCSIHLAG 152
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 160 bits (407), Expect = 6e-47
Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 55/206 (26%)
Query: 110 DKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA 169
YF Y M++D VRT +Y+ AIL N
Sbjct: 12 AVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQN-------------------------- 45
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 229
+ F +K V+DVG G+GILS FAAQAGA K++A
Sbjct: 46 ---------------------------HTDFKDKIVLDVGCGSGILSFFAAQAGARKIYA 78
Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
+E S +A +++ N +I V +E+V LP E VDIIISE MGY L E M++S
Sbjct: 79 VEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLES 137
Query: 290 VIDARNRFLKPDGVVCPNRFTLSLCG 315
+ A+ ++LKP G + P + L
Sbjct: 138 YLHAK-KYLKPSGNMFPTIGDVHLAP 162
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 162 bits (411), Expect = 2e-46
Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 56/237 (23%)
Query: 80 EDIAQMRHLMQDMLNKKEEDEEGENKTRRHDK-YYFNSYEDAHIHAEMIKDTVRTESYKS 138
D ++++ E +T YF Y M++D VRT +Y+
Sbjct: 89 HDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQR 148
Query: 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS 198
AIL N +
Sbjct: 149 AILQN-----------------------------------------------------HT 155
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL 258
F +K V+DVG G+GILS FAAQAGA K++A+E S +A +++ N +I V
Sbjct: 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGK 215
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCG 315
+E+V LP E VDIIISE MGY L E M++S + A+ ++LKP G + P + L
Sbjct: 216 VEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 270
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 154 bits (390), Expect = 3e-44
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 54/206 (26%)
Query: 110 DKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA 169
YF +Y + +M+ D VR ++Y +A+ N
Sbjct: 25 YAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQN-------------------------- 58
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 229
K F K V+DVG G+GIL+I++AQAGA KV+A
Sbjct: 59 ---------------------------KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYA 91
Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
+E + +A +++ N D +EV +ED+ LP E VD+IISEWMGYFLL E+M DS
Sbjct: 92 VEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDS 150
Query: 290 VIDARNRFLKPDGVVCPNRFTLSLCG 315
VI AR+R+LKP GV+ P+ + L
Sbjct: 151 VISARDRWLKPTGVMYPSHARMWLAP 176
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 123 bits (308), Expect = 2e-31
Identities = 35/279 (12%), Positives = 84/279 (30%), Gaps = 65/279 (23%)
Query: 65 CSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYED----- 119
+ + +++E +RH ++ +N + + GE Y+D
Sbjct: 308 RATTDTFKYNTSIKSEYSQALRHAVR-NVNYRSRPDVGEGSNDSTHYLNVIEYKDVLQAP 366
Query: 120 ---------AHIHAEMIKDTVRTESYKSAILN-----NNSLFNNKHVIDVGAGTGILSIF 165
+ ++ +D ++ + Y A++ + +G G G +
Sbjct: 367 LQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTK 426
Query: 166 AAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA 225
++ ++
Sbjct: 427 ILKSEREYNNTFR---------------------------------------QGQESLKV 447
Query: 226 KVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV-----ESVDIIISEWMGYF 280
K++ +EK+ A T+ + + ++ + + + E DII+SE +G F
Sbjct: 448 KLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSF 507
Query: 281 LLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE 319
E + +D FLKP + P ++T + +
Sbjct: 508 GDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMST 545
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 80.3 bits (198), Expect = 1e-17
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYET-IDIIRKNKYDS 250
A+ +L + D+G GTG ++ A +V ++ + R++ +
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306
++ ++D+ E +D+I SE Y + FE ++ ++LK G +
Sbjct: 97 RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE----RGLNEWRKYLKKGGYLAV 148
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 74.6 bits (183), Expect = 9e-16
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Query: 176 AIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDI 235
+ +S ++ + FN K V+D+G G G I+AA+ GA KV I D+
Sbjct: 19 QMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI---DL 75
Query: 236 AYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARN 295
+ + ++ + K +ED+ + ++ ++++S L + D +
Sbjct: 76 SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA---LHYIASFDDICKKVY 132
Query: 296 RFLKPDGVV 304
LK G
Sbjct: 133 INLKSSGSF 141
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 66.8 bits (163), Expect = 5e-13
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYET-IDIIRK 245
E+ + A+ L ++ + D+G GTG ++F A ++ I+ E + K
Sbjct: 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK 91
Query: 246 NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+++ ++++ E +D+I SE Y + FE ++ +++LK G +
Sbjct: 92 ANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFI 146
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 64.5 bits (157), Expect = 2e-12
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKL 258
++DVG+ L I + G A E + Y+ + + + +I+V
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLAN 74
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG--VVCPN 307
+ V +I MG L I +++ L ++ PN
Sbjct: 75 GLAAFEETDQVSVITIAGMGGRL-----IARILEEGLGKLANVERLILQPN 120
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 61.8 bits (150), Expect = 2e-11
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 202 NKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLL 259
N+ + D+G+ L FA + A+ A E D ++ +R + QI+V
Sbjct: 22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG 81
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG--VVCPN 307
V +++D I+ MG L I ++++ L ++ PN
Sbjct: 82 LAVIEKKDAIDTIVIAGMGGTL-----IRTILEEGAAKLAGVTKLILQPN 126
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 61.1 bits (148), Expect = 4e-11
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKL 258
++DVG+ L IF Q G A E + Y+ + + ++ S+I+V
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG--VVCPN 307
+++D I MG L I +++ L+ V+ PN
Sbjct: 81 GLSAFEEADNIDTITICGMGGRL-----IADILNNDIDKLQHVKTLVLQPN 126
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 59.8 bits (145), Expect = 1e-10
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
++D+G G G +A + GA+ V + D++ + + R D+ I L+
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGL---DLSEKMLARARAAGPDTGITYERADLDK 100
Query: 262 VELPVESVDIIISEWMGYFLL-FETMIDSVIDARNRFLKPDGVVC 305
+ LP +S D+ S +++ + +V ++ L P G
Sbjct: 101 LHLPQDSFDLAYSSLALHYVEDVARLFRTV----HQALSPGGHFV 141
Score = 38.6 bits (90), Expect = 0.001
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++D+G G G +A + GA+ V ++ S
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLS 75
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 58.1 bits (141), Expect = 2e-10
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
L N ++D G G G + + K++ I DI + +++
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCI---DINVIALKEVKEK---- 58
Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
+ L + E+P SVD I+ F M D VI R LK DG V
Sbjct: 59 -FDSVITLSDPKEIPDNSVDFILF-----ANSFHDMDDKQHVISEVKRILKDDGRV 108
Score = 40.4 bits (95), Expect = 2e-04
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
L N ++D G G G + + K++ I+ +
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDIN 48
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 58.7 bits (142), Expect = 3e-10
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 23/125 (18%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH 256
F +++++G+ G + + + +E S+ A + + I H
Sbjct: 38 TPFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHA----QGRLKDGITYIH 92
Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETM------IDSVIDARNRFLKPDGVV---CPN 307
ED +LP D I+ L + + + + +L G + CPN
Sbjct: 93 SRFEDAQLP-RRYDNIV--------LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143
Query: 308 RFTLS 312
+S
Sbjct: 144 ANAVS 148
Score = 40.6 bits (95), Expect = 3e-04
Identities = 8/74 (10%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 107 RRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFA 166
R +D+ ++ + + D + ++ F +++++G+ G +
Sbjct: 6 RNYDQEIKDTAGHKYAY-NFDFDVMHPFMVRAFT----PFFRPGNLLELGSFKGDFTSRL 60
Query: 167 AQAGAAKVFAIEKS 180
+ + +E S
Sbjct: 61 QEHF-NDITCVEAS 73
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 56.3 bits (136), Expect = 1e-09
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 16/122 (13%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
K V+D+G +G L + G +V IE A + ++ + +
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEA---AEQAKEKLDH--VVLGDIETM 85
Query: 261 DVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC---PNRFTLSLCG 315
D+ E D +I + E + D +VI+ ++K +GV+ PN +S+
Sbjct: 86 DMPYEEEQFDCVIF-----GDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLA 140
Query: 316 AY 317
Sbjct: 141 PL 142
Score = 38.2 bits (89), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185
K V+D+G +G L + G +V IE
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAE 68
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 54.7 bits (132), Expect = 4e-09
Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHK 257
N +DVG GTG +++ A +V+AI+++ A T ++ ++++ + +
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89
Query: 258 LLEDVELPVESVD-IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
+ + +D ++ G + ++ LKP G + L
Sbjct: 90 DAPEALCKIPDIDIAVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAILL 137
Score = 42.7 bits (101), Expect = 4e-05
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
VR I+ N +DVG GTG +++ A +V+AI++
Sbjct: 16 PTAMEVR-----CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDR 63
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 54.9 bits (133), Expect = 4e-09
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
+++ V DVG G+GIL+I A + GA V A + SD + + N
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 256 HKLLEDVELPVESVDIII 273
LL DV+ D+I+
Sbjct: 116 TSLLADVDGK---FDLIV 130
Score = 47.6 bits (114), Expect = 9e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
+ V DVG G+GIL+I A + GA V A
Sbjct: 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLAT 89
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 52.9 bits (127), Expect = 2e-08
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 9/118 (7%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-KYDSQIEVYHKLLED 261
+ +++G G + A + I D+ I + K S I +
Sbjct: 53 SNGLEIGCAAGAFTEKLAPHCKR-LTVI---DVMPRAIGRACQRTKRWSHISWAATDILQ 108
Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG---VVCPNRFTLSLCGA 316
E D+I+ + Y+L T + + ID + L P G T G
Sbjct: 109 -FSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGH 165
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 52.5 bits (126), Expect = 3e-08
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
+ V+D+G G G L A G + + D +D R + L +
Sbjct: 53 PERVLDLGCGEGWLLRALADRG-IEAVGV---DGDRTLVDAARAAGAGEVHLASYAQLAE 108
Query: 262 VELPV-ESVDIIISEWMGYFLLFETM-IDSVIDARNRFLKPDGVV 304
++PV + D+I + I ++ A L P G +
Sbjct: 109 AKVPVGKDYDLICA-----NFALLHQDIIELLSAMRTLLVPGGAL 148
Score = 35.5 bits (82), Expect = 0.013
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185
+ V+D+G G G L A G + ++ T +
Sbjct: 53 PERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVD 88
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 51.8 bits (124), Expect = 4e-08
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 15/128 (11%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRK----- 245
++ N + VID+G G G L I + ++ + D++Y +++I ++
Sbjct: 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGV---DVSYRSLEIAQERLDRL 76
Query: 246 ---NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
++++ L + D L + + + F +P
Sbjct: 77 RLPRNQWERLQLIQGALTYQDKRFHGYDAATV-IEVIEHLDLSRLGAFERVLFEFAQPKI 135
Query: 303 VVC--PNR 308
V+ PN
Sbjct: 136 VIVTTPNI 143
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 50.5 bits (120), Expect = 1e-07
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 186 TESYKSAILNNKSL---FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI 242
+ S +L K V D+GAGTG+LS A GA +V +E A +D+
Sbjct: 31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEA---VDV 87
Query: 243 IRKN--KYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP 300
+ +N ++ + +V+ + + VDI+I ++ A +
Sbjct: 88 LIENLGEFKGKFKVFIGDVSEFNSR---VDIVIMNPPFGSQRKHADRPFLLKA----FEI 140
Query: 301 DGVV 304
VV
Sbjct: 141 SDVV 144
Score = 40.8 bits (95), Expect = 2e-04
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 133 TESYKSAILNNNSL---FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+ S +L K V D+GAGTG+LS A GA +V +E
Sbjct: 31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVD 81
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 50.8 bits (121), Expect = 2e-07
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 12/136 (8%)
Query: 181 GTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSDIAYE 238
T R ++ A+ + L V V G + + ++ I D E
Sbjct: 100 ATRERHGHFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGI---DYDPE 154
Query: 239 TIDI----IRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDAR 294
+D + QI ++ + ++ E D++ S + + + + +
Sbjct: 155 ALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRF 213
Query: 295 NRFLKPDGVVCPNRFT 310
+ LKP G + + T
Sbjct: 214 WQALKPGGALVTSFLT 229
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 50.6 bits (121), Expect = 2e-07
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 22/126 (17%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLL 259
+ID+ +G GI+ + + AK+ +E + + + N+ + QIE+ L
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108
Query: 260 EDV--ELPVESVDIIISEWMGYFLLFET------------------MIDSVIDARNRFLK 299
+ + +P E DI+ YF +T ++ I LK
Sbjct: 109 KKITDLIPKERADIVTCN-PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK 167
Query: 300 PDGVVC 305
G
Sbjct: 168 QGGKAN 173
Score = 38.6 bits (90), Expect = 0.001
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+ID+ +G GI+ + + AK+ +E
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQ 81
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 49.4 bits (118), Expect = 2e-07
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
S +L + +D+G G G S++ A G V A +K+ ++ ++ I+ +
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLD 80
Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+ L ++ D I+S + F L I +I R KP G
Sbjct: 81 NLHTRVVDLNNLTFD-RQYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGY 131
Score = 33.2 bits (76), Expect = 0.073
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185
S +L + +D+G G G S++ A G V A +K+ I
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIA 68
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 49.6 bits (118), Expect = 2e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVY 255
N + VID G G GIL+ + GA V A DI + I+ ++N +
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAF---DIDPDAIETAKRN--CGGVNFM 100
Query: 256 HKLLEDVELPVESV 269
+ ++ ++
Sbjct: 101 VADVSEISGKYDTW 114
Score = 43.1 bits (101), Expect = 3e-05
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 9/127 (7%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT-----ESYKSAILNNKSLFN 201
+ VID G G GIL+ + GA V A + I T + + +
Sbjct: 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISG 109
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEK---SDIAYETIDIIRKNKYDSQIEVYHKL 258
+ G + + +A K F S + D +R+ ++ ++ +V+ +
Sbjct: 110 KYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRR-EFSARGDVFREE 168
Query: 259 LEDVELP 265
+ +P
Sbjct: 169 KVYITVP 175
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 48.7 bits (117), Expect = 3e-07
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
L + V+DVG G+G +++ A+ V+AI+ D I++ ++N
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLD---GAIEVTKQN 76
Score = 43.7 bits (104), Expect = 2e-05
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
L + V+DVG G+G +++ A+ V+AI+
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDY 65
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 49.4 bits (118), Expect = 3e-07
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETID 241
P + Y ++ N ++D+GAGTG+LS + A + D++ + ++
Sbjct: 26 PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLV---DMSEKMLE 82
Query: 242 IIR-KNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP 300
I + + + + +++ + E D+++S + L E + LK
Sbjct: 83 IAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDED-KKELYKRSYSILKE 140
Query: 301 DGVV 304
G+
Sbjct: 141 SGIF 144
Score = 34.4 bits (79), Expect = 0.028
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 125 EMIKDTV--RTESYKSAILNNNSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKS 180
E + + + Y ++ + N ++D+GAGTG+LS + A ++ S
Sbjct: 19 EQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMS 77
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 48.8 bits (116), Expect = 4e-07
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRK---- 245
++ N K VID+G G G L + ++ + D++Y ++ +
Sbjct: 19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGV---DVSYSVLERAKDRLKI 75
Query: 246 ----NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPD 301
+I ++ L + D + L E + + F +P
Sbjct: 76 DRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQ 134
Query: 302 GVV--CPNR 308
V+ PN+
Sbjct: 135 TVIVSTPNK 143
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 49.2 bits (117), Expect = 5e-07
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%)
Query: 167 AQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAK 226
A AA+V+ + T RT YK+ +L V+DV GTG+ SI + G
Sbjct: 23 ADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FS 81
Query: 227 VFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL----------PVESVDIIISEW 276
V ++ D + + + K +++ + E E + D +I
Sbjct: 82 VTSV---DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138
Query: 277 --MGYFLLFETMIDSVIDA-RN--RFLKPDGV 303
+ + A +N ++P G+
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170
Score = 36.9 bits (85), Expect = 0.005
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 89 MQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFN 148
+ + + E ++ +I RT YK+ +L
Sbjct: 2 VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIG----DTRSRTAEYKAWLLGLLRQHG 57
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
V+DV GTG+ SI + G V +++ S
Sbjct: 58 CHRVLDVACGTGVDSIMLVEEG-FSVTSVDAS 88
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 48.5 bits (116), Expect = 6e-07
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 204 HVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
V+DVG G G + ++ KV+AI D+ E ++ + ++ L +
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAI---DVQEEMVNYAWEKVNKLGLKNVEVLKSE 96
Query: 262 VE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
LP +VD I + L + ++ R KP +
Sbjct: 97 ENKIPLPDNTVDFIFMA-FTFHEL--SEPLKFLEELKRVAKPFAYL 139
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 47.9 bits (114), Expect = 8e-07
Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
++DVG+GTG + A G ++ + + A +++ R+ + +H + D+
Sbjct: 44 VILDVGSGTGRWTGHLASLG-HQIEGL---EPATRLVELARQT--HPSVTFHHGTITDLS 97
Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ +++ W + + + A ++ G +
Sbjct: 98 DSPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGL 137
Score = 31.3 bits (71), Expect = 0.30
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++DVG+GTG + A G ++ +E +
Sbjct: 44 VILDVGSGTGRWTGHLASLG-HQIEGLEPA 72
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 48.0 bits (114), Expect = 8e-07
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLL 259
+K V+D GAG + + K + I +I+ + + + ++ + +
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGI---EISDLQLKKAENFSRENNFKLNISKGDI 80
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ ES+ + S + + + ID R LKP G+ C
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKND-VKEAIDEIKRVLKPGGLAC 125
Score = 32.6 bits (74), Expect = 0.12
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+K V+D GAG + + K + IE S
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEIS 55
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 47.6 bits (113), Expect = 9e-07
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK--NKYDSQIEVYH 256
++ + G G + F A G +V A+++S + + ++ + +I
Sbjct: 27 QIPQGKILCLAEGEGRNACFLASLG-YEVTAVDQSSVG---LAKAKQLAQEKGVKITTVQ 82
Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
L D ++ ++ + I+ + L ++ + + LKP GV
Sbjct: 83 SNLADFDIVADAWEGIV---SIFCHLPSSLRQQLYPKVYQGLKPGGV 126
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 47.5 bits (114), Expect = 1e-06
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 34/129 (26%)
Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---- 246
S+FN +D+ +G+G L+I A G K IEK+ + + +I++N
Sbjct: 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKN---FAALKVIKENIAIT 90
Query: 247 KYDSQIEVYH----KLLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARN 295
K + EV + LE D++ L + ++ +++
Sbjct: 91 KEPEKFEVRKMDANRALEQFYEEKLQFDLV-------LLDPPYAKQEIVSQLEKMLE--R 141
Query: 296 RFLKPDGVV 304
+ L + V+
Sbjct: 142 QLLTNEAVI 150
Score = 31.7 bits (73), Expect = 0.16
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 145 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
S+FN +D+ +G+G L+I A G K IEK+
Sbjct: 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKN 76
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 47.9 bits (114), Expect = 1e-06
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
+V++ G GTG L+ AG V+ I + + E I ++ K + +
Sbjct: 46 FGNVLEFGVGTGNLTNKLLLAG-RTVYGI---EPSREMRMIAKE-KLPKEFSITEGDFLS 100
Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
E+P S+D I+S + L + + I ++ L G +
Sbjct: 101 FEVP-TSIDTIVS-TYAFHHLTDDEKNVAIAKYSQLLNKGGKIV 142
Score = 36.4 bits (84), Expect = 0.007
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 119 DAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
D+ + E I+ Y+ IL + + +V++ G GTG L+ AG V+ IE
Sbjct: 17 DSFVQGEDIQYKEVFAHYE-DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIE 74
Query: 179 KS 180
S
Sbjct: 75 PS 76
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 47.2 bits (113), Expect = 1e-06
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---- 246
++FN V+D+ AG+G L+I A G + +EK+ + II+ N
Sbjct: 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKN---RKAQAIIQDNIIMT 77
Query: 247 KYDSQIEVYHK-LLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARNRFL 298
K +++ + ++ D++ FL I+++ A L
Sbjct: 78 KAENRFTLLKMEAERAIDCLTGRFDLV-------FLDPPYAKETIVATIEAL--AAKNLL 128
Query: 299 KPDGVV 304
+V
Sbjct: 129 SEQVMV 134
Score = 33.7 bits (78), Expect = 0.034
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 145 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++FN V+D+ AG+G L+I A G + +EK+
Sbjct: 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKN 63
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 47.5 bits (113), Expect = 1e-06
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVY 255
ID+G+G G LSI A+ + A+ D + +I KN + +I++
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFSIRAL---DFSKHMNEIALKNIADANLNDRIQI- 97
Query: 256 HKLLEDVE-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ DV +P+E D+I+S +F + + R LK G
Sbjct: 98 --VQGDVHNIPIEDNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTY 145
Score = 35.2 bits (81), Expect = 0.019
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 99 DEEGENKTRRHDKYY--FNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVG 156
E + ++ K + A I+ + ++ + + ID+G
Sbjct: 3 SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITA-----------GTCIDIG 51
Query: 157 AGTGILSIFAAQAGAAKVFAI 177
+G G LSI A+ + A+
Sbjct: 52 SGPGALSIALAKQSDFSIRAL 72
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 47.6 bits (113), Expect = 2e-06
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
V+DVG G G + ++ G K + DI+ I ++ + L
Sbjct: 54 EAEVLDVGCGDGYGTYKLSRTG-YKAVGV---DISEVMIQKGKERGEGPDLSFIKGDLSS 109
Query: 262 VELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
+ E + I++ E + ++ R LK DG C
Sbjct: 110 LPFENEQFEAIMA-----INSLEWTEEPLRALNEIKRVLKSDGYAC 150
Score = 34.5 bits (79), Expect = 0.031
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
V+DVG G G + ++ G K +
Sbjct: 54 EAEVLDVGCGDGYGTYKLSRTG-YKAVGV 81
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 47.6 bits (112), Expect = 2e-06
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 2/117 (1%)
Query: 196 NKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYET-IDIIRKNKYDSQIE 253
F + V+D+G G L++ A + G +++ ++ + IR +
Sbjct: 41 KPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRL 100
Query: 254 VYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310
L D E + + + + + D V PN
Sbjct: 101 PPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVV 157
Score = 46.5 bits (109), Expect = 5e-06
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 101 EGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTG 160
++ K+ + +Y + + + R K F + V+D+G G
Sbjct: 5 PAAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKP------EWFRGRDVLDLGCNVG 58
Query: 161 ILSI-FAAQAGAAKVFAIEKSGTPIR 185
L++ A + G +++ ++ I
Sbjct: 59 HLTLSIACKWGPSRMVGLDIDSRLIH 84
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 46.8 bits (111), Expect = 2e-06
Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 15/122 (12%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH 256
+ V+D+G G G + G + ++ ++ I K++ +
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDM---IKFCEG-KFN--VVKSD 89
Query: 257 KLLEDVELPVESVDIIISEWMGYFL--LFETMIDSVIDARNRFLKPDGVV---CPNRFTL 311
+ LP + +D ++ + +F+ L + ++ +K + PN +L
Sbjct: 90 AIEYLKSLPDKYLDGVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL 146
Query: 312 SL 313
Sbjct: 147 YS 148
Score = 36.0 bits (83), Expect = 0.008
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 110 DKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA 169
YYF E E++K R Y + V+D+G G G +
Sbjct: 11 SDYYFLFEEKFRGSRELVKA--RLRRYIPYFKGC------RRVLDIGCGRGEFLELCKEE 62
Query: 170 GAAKVFAIEKS 180
G + ++ +
Sbjct: 63 G-IESIGVDIN 72
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 46.9 bits (112), Expect = 3e-06
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
+ L V+D+G G+G+L+I A + G K ++ + ++N +
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRN--GVRPRFL 172
Query: 256 HKLLEDVELPVESVDIII 273
LE LP D+++
Sbjct: 173 EGSLEAA-LPFGPFDLLV 189
Score = 42.3 bits (100), Expect = 8e-05
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
V+D+G G+G+L+I A + G K +
Sbjct: 121 GDKVLDLGTGSGVLAIAAEKLG-GKALGV 148
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 47.0 bits (111), Expect = 3e-06
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 5/115 (4%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK-NKYDS 250
+ + +D GAG G ++ A +E ++ ++
Sbjct: 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHM---LEEAKRELAGMP 140
Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ +E LP + D+I+ +W +L + + + L P+G +
Sbjct: 141 VGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ-QALTPNGYIF 194
Score = 28.9 bits (64), Expect = 1.8
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+D GAG G ++ A +E
Sbjct: 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPV 125
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 46.6 bits (110), Expect = 3e-06
Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEV----YHKL 258
+ID G G + F +Q +V + D++ ++I K + I
Sbjct: 58 LPLIDFACGNGTQTKFLSQFF-PRVIGL---DVSKSALEIAAKENTAANISYRLLDGLVP 113
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG---VVCPNRFTLSLCG 315
+ ++ E D I G+ + + + + L G ++ +
Sbjct: 114 EQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN 173
Query: 316 AYAE 319
+ E
Sbjct: 174 SLLE 177
Score = 31.2 bits (70), Expect = 0.34
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAI 177
+ID G G + F +Q +V +
Sbjct: 58 LPLIDFACGNGTQTKFLSQFF-PRVIGL 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 4e-06
Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 66/269 (24%)
Query: 49 RSVILVLSVTIMSPPACSDLEE------KNAEID---MRNEDIAQMRHLMQDMLNKKEED 99
+ ++ V + C D+++ EID M + ++ L +L+K+EE
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 100 EEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSA---ILNNNSLFNNKHVIDVG 156
+ + Y F + I E + ++ T Y + N+N +F +V
Sbjct: 79 VQKFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---- 131
Query: 157 AGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY---KSAILNNKSLFNNKHVIDVG-AGT 212
R + Y + A+L + K+V+ G G+
Sbjct: 132 ---------------------------SRLQPYLKLRQALLELRP---AKNVLIDGVLGS 161
Query: 213 GILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES-VD 270
G + A + + I + +++ N ++ +E+ KLL ++ S D
Sbjct: 162 G-KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 271 IIISEWMGYFLLFETMIDSVIDARNRFLK 299
+ + I S+ R LK
Sbjct: 219 HSSNI--------KLRIHSIQAELRRLLK 239
Score = 32.9 bits (74), Expect = 0.16
Identities = 42/278 (15%), Positives = 84/278 (30%), Gaps = 83/278 (29%)
Query: 28 ASVKDCYQRNW--YKQ----AVTSVIVRSV----------------ILVLSVTIMSPPAC 65
S++D W +K +T++I S+ + S I +
Sbjct: 335 ESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 66 ---SDLEEKNAEIDMR--------NEDIAQMR---HLMQDMLNKKEEDE--------EGE 103
D+ + + + + + + + L K E+E +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 104 NKTRRH----------DKYYFNSYEDAHI--HAEMIKDTVRTESYKSAILNNNSLFNNKH 151
N + D+Y+++ HI H + I+ R ++ L+ F +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVFLDFR--FLEQK 506
Query: 152 VIDVG----AGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVID 207
+ A IL+ Q K + + E +AIL+ L + +
Sbjct: 507 IRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKY---ERLVNAILDF--LPKIEENLI 560
Query: 208 VGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK 245
T +L I A A E I E +++
Sbjct: 561 CSKYTDLLRI-ALMA--------EDEAIFEEAHKQVQR 589
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 45.2 bits (107), Expect = 6e-06
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL 258
L ++++G G G + AG V A D + E + V L
Sbjct: 41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDAT---DGSPELAAEASRR---LGRPVRTML 93
Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA 318
++ ++ D + + + + + V+ R LKP G F S
Sbjct: 94 FHQLDAI-DAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGG-----LFYASYKSGEG 146
Query: 319 E 319
E
Sbjct: 147 E 147
Score = 31.8 bits (72), Expect = 0.21
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
L ++++G G G + AG V A + S
Sbjct: 41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGS 74
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 44.8 bits (106), Expect = 7e-06
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
++D G G G + + ++ G V D+ ID +++ + L
Sbjct: 47 GAKILDAGCGQGRIGGYLSKQG-HDVLGT---DLDPILIDYAKQD--FPEARWVVGDLSV 100
Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
++ D+I+S L E + + +R L DG
Sbjct: 101 DQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
Score = 35.2 bits (81), Expect = 0.016
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 110 DKYYFNSYEDAHIHAEMIKDTVRT--ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA 167
+ N+ + +A+ ++ + Y A L + ++D G G G + + +
Sbjct: 6 KELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLS 65
Query: 168 QAGAAKVFAIEKS 180
+ G V +
Sbjct: 66 KQG-HDVLGTDLD 77
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 44.8 bits (106), Expect = 9e-06
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHK 257
+ + D+G G+G +S+ AG + IE E I I ++
Sbjct: 53 PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111
Query: 258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
+ + + F+ ++ D +L P + N TL
Sbjct: 112 TAPAALADLPLPEAV-------FIGGGGS-QALYDRLWEWLAPGTRIVANAVTL 157
Score = 38.3 bits (89), Expect = 0.001
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 118 EDAHIHAEMI-KDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 176
E A H I K +R + L + + + D+G G+G +S+ AG +
Sbjct: 29 ESAFAHDGQITKSPMR-----ALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG-GRAIT 82
Query: 177 IEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAG 211
IE I N + + G
Sbjct: 83 IEPR------ADRIENIQKNIDTYGLSPRMRAVQG 111
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 44.5 bits (105), Expect = 1e-05
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
V+++ +GTG + + +V A+ D + E I ++ D+ +E + L D
Sbjct: 48 GDVLELASGTGYWTRHLSGLA-DRVTAL---DGSAEMIAEAGRHGLDN-VEFRQQDLFDW 102
Query: 263 ELPVESVDIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVV 304
P D + + ++L + ++ ++ + P GVV
Sbjct: 103 T-PDRQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVV 142
Score = 33.3 bits (76), Expect = 0.065
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
V+++ +GTG + + +V A++ S
Sbjct: 48 GDVLELASGTGYWTRHLSGLA-DRVTALDGS 77
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 46.0 bits (108), Expect = 1e-05
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKS----DIAYETI--DI 242
L + + ++D G G+G L + ++ S A + + +
Sbjct: 711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770
Query: 243 IRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
++ +Y + + + + VDI + E + P
Sbjct: 771 NKEACNVKSATLYDGSILEFDSRLHDVDIGTC-LEVIEHMEEDQACEFGEKVLSLFHPKL 829
Query: 303 VVC--PNR 308
++ PN
Sbjct: 830 LIVSTPNY 837
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 45.0 bits (106), Expect = 1e-05
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK--NKYDSQIEVYH 256
+ + V+D+G G G S++ + G V + + ++ + I + + K + I
Sbjct: 118 IISPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENS---IAFLNETKEKENLNISTAL 173
Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ + E+ D I+S + FL E + S+I G
Sbjct: 174 YDINAANIQ-ENYDFIVSTVVFMFLNRER-VPSIIKNMKEHTNVGGYN 219
Score = 30.7 bits (69), Expect = 0.62
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 118 EDAHIHAEMIKDTVRTESYKSAILNNNS-------LFNNKHVIDVGAGTGILSIFAAQAG 170
+D S K + + + V+D+G G G S++ + G
Sbjct: 83 DDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLG 142
Query: 171 AAKVFAIEKSGTPIR 185
V + + + I
Sbjct: 143 -YDVTSWDHNENSIA 156
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 44.5 bits (105), Expect = 1e-05
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLL 259
V+D+ G G S G +V + DI+ + I R+ +S +E
Sbjct: 39 RGKVLDLACGVGGFSFLLEDYG-FEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDA 94
Query: 260 EDVELPVESVDIIIS-EWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ ++ D +I + + +F E ++ V R LKP G
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLE--LNQVFKEVRRVLKPSGKFI 139
Score = 31.8 bits (72), Expect = 0.23
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
V+D+ G G S G +V +
Sbjct: 39 RGKVLDLACGVGGFSFLLEDYG-FEVVGV 66
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 44.5 bits (105), Expect = 2e-05
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
N V+D+G GTG S+F + G +V + D + E +++ R+ V E
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERG-FEVVLV---DPSKEMLEVAREKGVK---NVVEAKAE 106
Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
D+ P + + +++ +G L + D R L PDG++
Sbjct: 107 DLPFPSGAFEAVLA--LGDVLSYVENKDKAFSEIRRVLVPDGLLI 149
Score = 32.1 bits (73), Expect = 0.18
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 19/88 (21%)
Query: 92 MLNKKEEDEEGENKTRRHDKY------Y--FNSYEDAHIHAEMIKDTVRTESYKSAILNN 143
M + K K R + Y Y ++ +I +
Sbjct: 1 MGSDKIHHHHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLE----------- 49
Query: 144 NSLFNNKHVIDVGAGTGILSIFAAQAGA 171
L N V+D+G GTG S+F + G
Sbjct: 50 EYLKNPCRVLDLGGGTGKWSLFLQERGF 77
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 44.5 bits (105), Expect = 2e-05
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKS----DIAYETIDIIRKNKYDSQIEVY 255
+ D+GAG G + A A+V E+S + A ++++ + ++IEV
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 256 H-------KLLEDVELPVESVDIIIS 274
K + LP E +I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIM 121
Score = 36.0 bits (83), Expect = 0.011
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNK 203
+ D+GAG G + A A+V E+S + +S L + + F+ +
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAE-FARRSLELPDNAAFSAR 91
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 44.5 bits (105), Expect = 2e-05
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKYD---SQIEVYHKLL 259
V++ G G G ++ A+ A++ +I DI+ E+++ R+N ++ +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSI---DISPESLEKARENTEKNGIKNVKFLQANI 96
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
+ S D I ++ E + + + + LKP G +
Sbjct: 97 FSLPFEDSSFDHIFVCFV-----LEHLQSPEEALKSLKKVLKPGGTIT 139
Score = 34.5 bits (79), Expect = 0.033
Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 114 FNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA-A 172
Y + E ++ + + E+ + + ++ V++ G G G ++ A+ A
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA 62
Query: 173 KVFAIEKS 180
++ +I+ S
Sbjct: 63 EITSIDIS 70
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 44.1 bits (103), Expect = 3e-05
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAY-ETIDIIRKN 246
+ L K V ++GAG G++SI A AGA +V A +D E ++ + N
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA---TDYPDPEILNSLESN 122
Score = 40.6 bits (94), Expect = 4e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 176
+ L K V ++GAG G++SI A AGA +V A
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 42.9 bits (102), Expect = 4e-05
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 36/130 (27%)
Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---- 246
+LFN +D AG+G L A A KV +E + ++KN
Sbjct: 43 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD---KTVANQLKKNLQTL 99
Query: 247 -KYDSQIEVYH----KLLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDAR 294
Q EV + L+ + D++ FL L E I +
Sbjct: 100 KCSSEQAEVINQSSLDFLKQPQNQ-PHFDVV-------FLDPPFHFNLAEQAISLL--CE 149
Query: 295 NRFLKPDGVV 304
N +LKP+ ++
Sbjct: 150 NNWLKPNALI 159
Score = 35.2 bits (82), Expect = 0.015
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 145 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+LFN +D AG+G L A A KV +E
Sbjct: 43 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD 85
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 43.5 bits (102), Expect = 4e-05
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSD--IAYETIDIIRKNKYDSQIEVYHK 257
K ++DVG G G ++ AQ ++ + S I + +
Sbjct: 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS 96
Query: 258 LLEDVE------LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+D + + + +D+I + ++ FE S L+ DG +
Sbjct: 97 SSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA----YANLRKDGTIA 146
Score = 35.4 bits (81), Expect = 0.020
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKS 180
K ++DVG G G ++ AQ ++ + S
Sbjct: 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLS 70
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 42.5 bits (100), Expect = 5e-05
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 199 LFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK 257
++ + D+G G+G ++I E S+ E I N S +
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82
Query: 258 LLEDV--ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
++P ++ D+I +G L + + L G + N T+
Sbjct: 83 GAPRAFDDVP-DNPDVIF---IGGGLTAPGVFAAAWKR----LPVGGRLVANAVTV 130
Score = 34.7 bits (80), Expect = 0.016
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPI 184
+ K VR + ++ + ++ + D+G G+G ++I E S
Sbjct: 8 LTKQHVR-----ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEIS---- 58
Query: 185 RTESYKSAILNNKSLF--NNKHVIDVGAGTGILSIFAA 220
E + IL+N +++ + GA +
Sbjct: 59 --EERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDN 94
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 42.6 bits (101), Expect = 5e-05
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 30/125 (24%)
Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYD- 249
+LFN + +D AG+G L + A AA IE + KN
Sbjct: 44 TLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD---RAVSQQLIKNLATL 100
Query: 250 --SQIEVYHK-LLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARNRFLK 299
V + + + +I+ F+ L E I+ + N +L
Sbjct: 101 KAGNARVVNSNAMSFLAQKGTPHNIV-------FVDPPFRRGLLEETINLL--EDNGWLA 151
Query: 300 PDGVV 304
+ ++
Sbjct: 152 DEALI 156
Score = 34.1 bits (79), Expect = 0.031
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 145 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+LFN + +D AG+G L + A AA IE
Sbjct: 44 TLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD 86
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 42.7 bits (100), Expect = 6e-05
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVY 255
L ++ +G G LS G V +++ S + + + Q+
Sbjct: 37 EPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA--MQACYAHVPQLRWE 94
Query: 256 HKLLEDVELPVESVDIIIS 274
+ ++ P S D+++
Sbjct: 95 TMDVRKLDFPSASFDVVLE 113
Score = 33.9 bits (77), Expect = 0.038
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSA 192
++ +G G LS G V +++ S + A
Sbjct: 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA 86
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 42.8 bits (101), Expect = 6e-05
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLEDV 262
++D+G+G+G + A+ I+ S + + ++ H
Sbjct: 39 RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98
Query: 263 ELPVESVDIIISEWMGYFLLFETM--IDSVIDARNRFLKPDGVV 304
+ E D+ + + LKP G++
Sbjct: 99 -VANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIM 136
Score = 32.1 bits (73), Expect = 0.21
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++D+G+G+G + A+ I+ S
Sbjct: 39 RILDLGSGSGEMLCTWARDHGITGTGIDMS 68
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 42.2 bits (99), Expect = 7e-05
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 204 HVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLLE 260
V+D G G + F A +VF + D A T + ++ + +
Sbjct: 25 TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84
Query: 261 DVELPV-ESVDIII-------SEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+++ + V ++ S ET I ++ A L G++
Sbjct: 85 NMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAM-ELLVTGGIIT 136
Score = 29.1 bits (65), Expect = 1.4
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 151 HVIDVGAGTGILSIFAAQA--GAAKVFAIE 178
V+D G G + F A +VF +
Sbjct: 25 TVVDATCGNGNDTAFLASLVGENGRVFGFD 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 43/269 (15%), Positives = 84/269 (31%), Gaps = 94/269 (34%)
Query: 48 VRSVILV---LSVTIMSP----PACSDLEEK-NAEIDMRNEDIAQMRHLMQDMLNKKEED 99
R + L L ++ P S L+E+ N + E A D
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA--------------D 51
Query: 100 EEGENKTRRHDKY--YFNSYEDAH---IHAEMIKDTVRTESYKSAILNNNSLFNNKHVID 154
+E K+ Y +S + +++ + +++ L N + H
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT--EFENCYLEGNDI----HA-- 103
Query: 155 VGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGI 214
AA+ + K+ I+ +Y +A + K F+ K
Sbjct: 104 ----------LAAKLLQENDTTLVKTKELIK--NYITARIMAKRPFDKKSN--------- 142
Query: 215 LSIF--AAQAGAAKVFAI------------EKSDIAYETIDIIRKNKYDSQ----IEVYH 256
S A G A++ AI E D+ Y+T Y I+
Sbjct: 143 -SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQT--------YHVLVGDLIKFSA 192
Query: 257 KLLED-VELPVES-------VDIIISEWM 277
+ L + + +++ ++I+ EW+
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNIL--EWL 219
Score = 41.2 bits (96), Expect = 4e-04
Identities = 66/316 (20%), Positives = 107/316 (33%), Gaps = 107/316 (33%)
Query: 1 MSVEEMKQCVASR--LDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVT 58
M ++ K A++ + D H D S+ D N +++T
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHF-KDTYGFSILDIVINN----------------PVNLT 1673
Query: 59 IMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEE--DEEGENKTRRHDKYYFNS 116
I EK I R A + + D K E+ E E+ T Y F S
Sbjct: 1674 IHFGG------EKGKRI--RENYSAMIFETIVDGKLKTEKIFKEINEHST----SYTFRS 1721
Query: 117 YEDAHIHAEMIKDTVRTE------SYKSAILNNNSLFNNKHVIDVG---AGTGILSI--F 165
+ ++ T T+ A +K +I AG S+ +
Sbjct: 1722 EK------GLLSATQFTQPALTLMEK--AAFE---DLKSKGLIPADATFAG---HSLGEY 1767
Query: 166 AAQAGAAKVFAIE-------------KSGTPIRTESYKS-------------AILNNKSL 199
AA A A V +IE + P R E +S A + ++L
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 200 FNNKHVID-VGAGTG-ILSIFA------AQ---AGAAKVFAIEKSDIAYETIDIIRKNKY 248
++V++ VG TG ++ I Q AG + A++ ++ I+ K
Sbjct: 1827 ---QYVVERVGKRTGWLVEI-VNYNVENQQYVAAGDLR--ALDT---VTNVLNFIKLQKI 1877
Query: 249 DSQIEVYHKL-LEDVE 263
D IE+ L LE+VE
Sbjct: 1878 DI-IELQKSLSLEEVE 1892
Score = 35.4 bits (81), Expect = 0.029
Identities = 54/371 (14%), Positives = 95/371 (25%), Gaps = 147/371 (39%)
Query: 14 LDSMDMHA------DSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSD 67
L+ D+HA +D +N+ A + R + S
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TAR-IMAKRPF---------DKKSNSA 144
Query: 68 L----EEKNAEIDMRNEDIA----QMRHLMQDMLNKKEEDEEGENKTRRHDKYYF----- 114
L E NA++ +A Q G YF
Sbjct: 145 LFRAVGEGNAQL------VAIFGGQ-----------------GNTDD------YFEELRD 175
Query: 115 --NSYEDA-----HIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGA---------G 158
+Y AE + + +RT + +F +++
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTL------DAEKVF--TQGLNILEWLENPSNTPD 227
Query: 159 TGILS--------IFAAQAGAAKVFAIEKSG-TPIRTESYKSAILNNKSLFNNKHVIDVG 209
L I Q V A + G TP SY G
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKGAT--------------G 272
Query: 210 AGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDI-----IRKNKYDSQIEVYHKLLEDVE 263
G+++ + A+ + + F + I + +R + + +LED
Sbjct: 273 HSQGLVTAVAIAETDSWESFF----VSVRKAITVLFFIGVRCYEAYPNTSLPPSILED-- 326
Query: 264 LPVESVDIIISE----WMGYFL----LFETMIDSVIDARNRFLKPDGVVC------PNRF 309
S++ +E M L L + + ++ N L V
Sbjct: 327 ----SLEN--NEGVPSPM---LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 310 TL-----SLCG 315
+ SL G
Sbjct: 378 VVSGPPQSLYG 388
Score = 35.0 bits (80), Expect = 0.039
Identities = 36/239 (15%), Positives = 62/239 (25%), Gaps = 82/239 (34%)
Query: 8 QCVASRLD-SMDMHADSDDNDA-------SVKDCYQR---------NWYKQAVTSVIVRS 50
+ DS +N+ S+ + Q N + A + S
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GKQVEIS 369
Query: 51 VI-----LVLSVTIMSPP--------------ACSDLEEKNAEIDMRNEDIAQMR----- 86
++ LV+S PP A S L++ R R
Sbjct: 370 LVNGAKNLVVS----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-SNRFLPVA 424
Query: 87 -----HLMQDMLNKKEEDEEGENKTRRHDK-----YYFNSYED--------AHIHAEMI- 127
HL+ + +D N + Y D + + I
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 128 KDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT 186
+ V+ E + H++D G G +G + K GT +R
Sbjct: 485 RLPVKWE----TTTQFKAT----HILDFGPG--------GASGLGVLTHRNKDGTGVRV 527
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 41.7 bits (98), Expect = 1e-04
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK---- 257
+ ++D+G G+G +S+ A G V I DI E I + +
Sbjct: 31 DDEILDIGCGSGKISLELASKG-YSVTGI---DINSEAIRLAETAARSPGLNQKTGGKAE 86
Query: 258 -LLEDVE-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+E+ L S D + + + +I R LKP +
Sbjct: 87 FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLY 138
Score = 33.2 bits (76), Expect = 0.065
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGA 171
+ ++D+G G+G +S+ A G
Sbjct: 31 DDEILDIGCGSGKISLELASKGY 53
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 41.1 bits (96), Expect = 1e-04
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETIDIIRKNKYD 249
+ L+ L ++ + D+GAG+ +SI A+ ++FA+E++ I K
Sbjct: 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA 89
Query: 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309
+ + + + D + G M++ +IDA +R LK +GV+ N
Sbjct: 90 RNVTLVEAFAPEGLDDLPDPDRVFIGGSG------GMLEEIIDAVDRRLKSEGVIVLNAV 143
Query: 310 TL 311
TL
Sbjct: 144 TL 145
Score = 34.5 bits (79), Expect = 0.021
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPI 184
+ K VR + L+ L ++ + D+GAG+ +SI A+ ++FA+E++
Sbjct: 23 ITKQEVR-----AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERN---- 73
Query: 185 RTESYKSAILNNKSLFNNKHVIDVGA 210
Y I +N F ++V V A
Sbjct: 74 --PQYLGFIRDNLKKFVARNVTLVEA 97
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 41.7 bits (98), Expect = 1e-04
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-KYDSQIEVYHKLLE 260
N V+D+G+G G ++ + A I DI +++ + +++I +
Sbjct: 56 NSKVLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDIL 112
Query: 261 DVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
E P + D+I S +L ++ + + ++LKP G +
Sbjct: 113 TKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTL 155
Score = 30.9 bits (70), Expect = 0.42
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
N V+D+G+G G ++ + A I+
Sbjct: 56 NSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC 87
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 41.2 bits (96), Expect = 2e-04
Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
+D GAG G ++ +V ++ ++ + + L+
Sbjct: 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138
Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
D +S D+I +W+ L + + + + + L+P+G++
Sbjct: 139 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK-GSLRPNGIIV 182
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 41.0 bits (96), Expect = 2e-04
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQ 251
AI+N +L + D+GAGTG S+ A G V+A+ + + + Q
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAV---EPSIVMRQQAVVH---PQ 77
Query: 252 IEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+E + E++ LP +SVD +IS + + ++ R ++ +V
Sbjct: 78 VEWFTGYAENLALPDKSVDGVIS---ILAIHHFSHLEKSFQEMQRIIRDGTIVL 128
Score = 38.0 bits (88), Expect = 0.002
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
AI+N +L + D+GAGTG S+ A G V+A+E S
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPS 65
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 40.2 bits (95), Expect = 3e-04
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 26/126 (20%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI 252
I+ + V+D+ AG+G L + A GAA V +E + +I +N +
Sbjct: 36 IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESD---QRSAAVIARNIEALGL 92
Query: 253 EVYHKLLEDVE-----LPVESVDIIISEWMGYFL---------LFETMIDSVIDARNRFL 298
V VD++ + ++ ++ N +
Sbjct: 93 SGATLRRGAVAAVVAAGTTSPVDLV-------LADPPYNVDSADVDAILAAL--GTNGWT 143
Query: 299 KPDGVV 304
+ V
Sbjct: 144 REGTVA 149
Score = 33.3 bits (77), Expect = 0.053
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 145 SLFN---------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
SLFN V+D+ AG+G L + A GAA V +E
Sbjct: 32 SLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESD 76
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 40.0 bits (94), Expect = 3e-04
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY-----DSQIEVYH 256
+ ++D+G G G++ I A + + A I + ++N + I V H
Sbjct: 53 DDDILDLGCGYGVIGIALADE-VKSTTMADINRRA---IKLAKENIKLNNLDNYDIRVVH 108
Query: 257 K-LLEDVELPVESVDIIIS 274
L E+V + II+
Sbjct: 109 SDLYENV--KDRKYNKIIT 125
Score = 33.0 bits (76), Expect = 0.077
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+ ++D+G G G++ I A + +
Sbjct: 53 DDDILDLGCGYGVIGIALADE-VKSTTMADIN 83
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.2 bits (94), Expect = 4e-04
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
V+D+GAG G ++ + + + D E +++ + +E E
Sbjct: 24 RVLDIGAGAGHTALAFSPYV-QECIGV---DATKEMVEVASSFAQEKGVENVRFQQGTAE 79
Query: 264 -LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
LP S DII Y + + + R LK DG
Sbjct: 80 SLPFPDDSFDIITC---RYAAHHFSDVRKAVREVARVLKQDGRF 120
Score = 30.5 bits (69), Expect = 0.58
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
V+D+GAG G ++ + + ++ +
Sbjct: 24 RVLDIGAGAGHTALAFSPYV-QECIGVDAT 52
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 40.1 bits (94), Expect = 4e-04
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
++DV GTG + + +++ + + RK ++ +
Sbjct: 40 EASSLLDVACGTGTHLEHFTKEF-GDTAGL---ELSEDMLTHARKR--LPDATLHQGDMR 93
Query: 261 DVELPVESVDIIISEW--MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
D L ++S + +GY + + + + L+P GVV
Sbjct: 94 DFRLG-RKFSAVVSMFSSVGYL-KTTEELGAAVASFAEHLEPGGVVV 138
Score = 29.7 bits (67), Expect = 0.95
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++DV GTG + +E S
Sbjct: 40 EASSLLDVACGTGTHLEHFTKEF-GDTAGLELS 71
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 40.1 bits (94), Expect = 4e-04
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKL 258
+D+ GTG L+ +A+ D++ E + + + +
Sbjct: 37 VFDDYLDLACGTGNLTENLCPKF-KNTWAV---DLSQEMLSEAENKFRSQGLKPRLACQD 92
Query: 259 LEDVELPVESVDIIISEW--MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ ++ + D+I Y ++ + A + LK GV
Sbjct: 93 ISNLNIN-RKFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFI 139
Score = 33.2 bits (76), Expect = 0.070
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 115 NSYED-AHIHAEMIKDTVRTESYKSAILNNNSLFNN--KHVIDVGAGTGILSIFAAQAGA 171
N Y AHI+ ++I+ V + + I+ N +D+ GTG L+
Sbjct: 1 NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF- 59
Query: 172 AKVFAIEKS 180
+A++ S
Sbjct: 60 KNTWAVDLS 68
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 39.8 bits (93), Expect = 5e-04
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-- 246
+ I + + V+D+ GTGI ++ A+ G +V + D+ E + + R+
Sbjct: 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGL---DLHEEMLRVARRKAK 84
Query: 247 KYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ + +IE + ++ D + + E + + LKP GV
Sbjct: 85 ERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142
Score = 33.3 bits (76), Expect = 0.067
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 122 IHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
I+ I+ + I ++ + V+D+ GTGI ++ A+ G +V ++
Sbjct: 15 IYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLH 72
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 39.8 bits (93), Expect = 6e-04
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
++DV GTG+ A + V + +++ + + I R+ + ++H +
Sbjct: 50 KAASLLDVACGTGMHLRHLADSF-GTVEGL---ELSADMLAIARRR--NPDAVLHHGDMR 103
Query: 261 DVELPVESVDIIISEW--MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
D L + + +G+ L + +D+ ++ + PDGVV
Sbjct: 104 DFSLG-RRFSAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVV 148
Score = 29.1 bits (65), Expect = 1.9
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
++DV GTG+ A + V +E S
Sbjct: 50 KAASLLDVACGTGMHLRHLADSF-GTVEGLELS 81
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 39.9 bits (93), Expect = 6e-04
Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 23/236 (9%)
Query: 77 MRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKY----YFNSYEDAHIHAEMIKDTVR 132
MR + I ++++L+K+ +E + +R + + + I +
Sbjct: 1 MRTQGIKPR---IREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYA 57
Query: 133 TESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRTESYKS 191
+L + D G ++ + G + K +
Sbjct: 58 EVLGVKTVLRKGHIHGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERV 117
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDS 250
+ ++ V+D+ AG G LS+ A G AKV AIEK ++ + I NK +
Sbjct: 118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVED 175
Query: 251 QIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
++ Y+ D D I+ MGY + I + K ++
Sbjct: 176 RMSAYN---MDNRDFPGENIADRIL---MGYVVRTHEFIPKALSI----AKDGAII 221
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 39.7 bits (92), Expect = 6e-04
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 17/109 (15%)
Query: 204 HVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
++ +GA G S A A V+AIE + +++ I +L D
Sbjct: 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR--ELLDACAERENIIP---ILGDA 131
Query: 263 ELP------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
P VE VD+I + + +I FLK G
Sbjct: 132 NKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175
Score = 27.0 bits (59), Expect = 7.7
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 141 LNNNSLFNNKHVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSGTPIR 185
L + + ++ +GA G S A A V+AIE + +R
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR 112
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 39.9 bits (93), Expect = 6e-04
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 17/111 (15%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
H++D G G G L + +K I D + R+ + + L
Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDS--EFL 77
Query: 260 E-DVE-LPVE-SVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
E D + + DI I M +++ +K G +
Sbjct: 78 EGDATEIELNDKYDIAICHA-----FLLHMTTPETMLQKMIHSVKKGGKII 123
Score = 31.1 bits (70), Expect = 0.46
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKS 180
H++D G G G L + +K I+
Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG 56
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 39.9 bits (93), Expect = 7e-04
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 190 KSAILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
K + V+D+ G GI S IF + + +EK +
Sbjct: 47 KLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRS---SLYKFLNAKFE 103
Query: 249 DSQIEVYHK 257
S +++ +
Sbjct: 104 GSPLQILKR 112
Score = 35.3 bits (81), Expect = 0.018
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 137 KSAILNNNSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEK 179
K + V+D+ G GI S IF + + +EK
Sbjct: 47 KLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK 90
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 39.7 bits (92), Expect = 7e-04
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI 252
L V+D+G G G + +AG + + + DIA +I+ R + +
Sbjct: 56 CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRARNMKR 112
Query: 253 EVYHKLL-----EDVELPVESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
+ D+I S++ Y +D R L+P G
Sbjct: 113 RFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171
Score = 32.0 bits (72), Expect = 0.21
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR--TESYKSAIL 194
K+ ++ + V+D+G G G + +AG + + ++ + I ++
Sbjct: 54 KACLIRLYT-KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR 112
Query: 195 NNKSLF 200
K F
Sbjct: 113 RFKVFF 118
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 39.4 bits (92), Expect = 0.001
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHKLL 259
N V+D+ AG G SI A K++AI+ + A E + I+ NK + +I
Sbjct: 195 LNDVVVDMFAGVGPFSIACK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL--- 249
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
DV + +I M ID +D ++ GV+
Sbjct: 250 SDVREVDVKGNRVI---MNLPKFAHKFIDKALDI----VEEGGVI 287
Score = 27.5 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNN 196
N V+D+ AG G SI A K++AI+ + I K+ LN
Sbjct: 195 LNDVVVDMFAGVGPFSIAC--KNAKKIYAIDINPHAIEL-LKKNIKLNK 240
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 39.1 bits (91), Expect = 0.001
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL--- 258
+ V+++ AG G L+ G +V A+ +++ + RK ++ +V +
Sbjct: 83 SGPVLELAAGMGRLTFPFLDLG-WEVTAL---ELSTSVLAAFRKRLAEAPADVRDRCTLV 138
Query: 259 ---LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ L + ++ L E + + L+P G
Sbjct: 139 QGDMSAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKF 186
Score = 29.9 bits (67), Expect = 1.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+ V+++ AG G L+ G +V A+E S
Sbjct: 83 SGPVLELAAGMGRLTFPFLDLG-WEVTALELS 113
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 39.1 bits (91), Expect = 0.001
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 184 IRTESYKSAILNNKSLFN-NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYET-ID 241
+RT+ + ++ L + +D+GAG G + F + + + + + + +
Sbjct: 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE 123
Query: 242 IIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLK 299
+ I V + ++ S D I S+ F D V R LK
Sbjct: 124 YNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA-----FLHSPDKLKVFQECARVLK 178
Query: 300 PDGVVC 305
P GV+
Sbjct: 179 PRGVMA 184
Score = 32.1 bits (73), Expect = 0.19
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFN-NKHVIDVGAGTGILSIFAAQAG 170
+ Y++ E+ + ++RT+ + ++ L + +D+GAG G + F +
Sbjct: 45 IHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF 104
Query: 171 AAKVFAI 177
+ +
Sbjct: 105 GVSIDCL 111
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 39.2 bits (91), Expect = 0.001
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLLE 260
+ V+D+GAG G L++ A+ G A+V +E + + ++K + + H ++
Sbjct: 235 RQVLDLGAGYGALTLPLARMG-AEVVGVEDDLAS---VLSLQKGLEANALKAQALHSDVD 290
Query: 261 DVELPVESVDIIIS-------EWMGYFLLFETMIDSVIDARNRFLKPDG 302
+ DII++ + + + ++ A R L+P G
Sbjct: 291 EALTEEARFDIIVTNPPFHVGGAVILDVA-QAFVN---VAAAR-LRPGG 334
Score = 31.1 bits (70), Expect = 0.53
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+ V+D+GAG G L++ A+ G A+V +E
Sbjct: 235 RQVLDLGAGYGALTLPLARMG-AEVVGVEDD 264
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 37.5 bits (88), Expect = 0.002
Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 33/127 (25%)
Query: 198 SLFN--------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--- 246
+LF+ +D AG+G + + AA G V +EK E + ++++N
Sbjct: 30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVL-VEKD---PEAVRLLKENVRR 85
Query: 247 -KYDSQIEVYH--KLLEDVELPVESVDIIISEWMGYFL------LFETMIDSVIDARNRF 297
+++ L + + E + F+ + ++ +
Sbjct: 86 TGLGARVVALPVEVFLPEAKAQGERFTVA-------FMAPPYAMDLAALFGELLA--SGL 136
Query: 298 LKPDGVV 304
++ G+
Sbjct: 137 VEAGGLY 143
Score = 30.2 bits (69), Expect = 0.58
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 145 SLFN--------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+LF+ +D AG+G + + AA G V +EK
Sbjct: 30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVL-VEKD 72
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 38.2 bits (89), Expect = 0.002
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
N+ V+DV G G ++ A KV A D+ + + + R + + + D
Sbjct: 38 NEEVLDVATGGGHVANAFAPFV-KKVVAF---DLTEDILKVARAFIEGNGHQQVEYVQGD 93
Query: 262 VE-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
E +P I+ S + R LK G +
Sbjct: 94 AEQMPFTDERFHIVTC---RIAAHHFPNPASFVSEAYRVLKKGGQL 136
Score = 32.1 bits (73), Expect = 0.19
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 103 ENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGIL 162
+ H Y S IH S + ++ +L N+ V+DV G G +
Sbjct: 4 DKIHHHHHHMYVTS----QIH--------AKGSDLAKLMQIAALKGNEEVLDVATGGGHV 51
Query: 163 SIFAAQAGAAKVFAIEKS 180
+ A KV A + +
Sbjct: 52 ANAFAPFV-KKVVAFDLT 68
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 38.3 bits (90), Expect = 0.002
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVYH 256
K V D+G G+G + + A+ A VFA + S A ++I RKN + V
Sbjct: 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKA---VEIARKNAERHGVSDRFFVRK 179
Query: 257 K-LLEDVELPVESVDIIIS 274
LE + S+++I+S
Sbjct: 180 GEFLEPFKEKFASIEMILS 198
Score = 27.5 bits (62), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
K V D+G G+G + + A+ A VFA + S
Sbjct: 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS 155
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 38.5 bits (90), Expect = 0.002
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 202 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIE---VYHK 257
V+DVG G G+LS+ A+ + ++ + S A ++ R + +E
Sbjct: 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPA---VEASRATLAANGVEGEVFASN 253
Query: 258 LLEDVELPVESVDIIIS-------EWMGYFLLFETMIDSVIDARNRFLKPDG 302
+ +V+ D+IIS +T+I A L G
Sbjct: 254 VFSEVK---GRFDMIISNPPFHDGMQTSLDAA-QTLIR---GAVRH-LNSGG 297
Score = 30.8 bits (70), Expect = 0.55
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKS 180
V+DVG G G+LS+ A+ + ++ + S
Sbjct: 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVS 229
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 37.5 bits (87), Expect = 0.002
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---KYDSQIEVYHKL 258
V+D G G + F A + KV+A D+ + + + E+
Sbjct: 23 ESIVVDATMGNGNDTAFLAGL-SKKVYAF---DVQEQALGKTSQRLSDLGIENTELILDG 78
Query: 259 LEDV-ELPVESVDIIISEWM---GYFLLFETMIDSVIDARN---RFLKPDGVVC 305
E++ E + I T + ++A L+ G +
Sbjct: 79 HENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
Y S + K L +++G GTG + + + + +I RK
Sbjct: 35 YLSELQAVKCLLPEGRGVEIGVGTGRFA-----VPLKIKIGV---EPSERMAEIARKR-- 84
Query: 249 DSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
+ V E++ L ES D + + D + R LK G +
Sbjct: 85 --GVFVLKGTAENLPLKDESFDFALM-----VTTICFVDDPERALKEAYRILKKGGYLI 136
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.0 bits (88), Expect = 0.002
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLLED 261
+++G GTG +++ G + A+ D +++ R+ D +++V
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIAL---DADAAMLEVFRQKIAGVDRKVQVVQADARA 97
Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVV 304
+ LP ESV +I + + + D R LKP G +
Sbjct: 98 IPLPDESVHGVIVVHL-----WHLVPDWPKVLAEAIRVLKPGGAL 137
Score = 34.9 bits (80), Expect = 0.020
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+++G GTG +++ G + A++
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDAD 70
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 37.0 bits (86), Expect = 0.005
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
+ ++D+G GTG L+ AQ+G A+V D A I+ R+N + +
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSG-AEVLGT---DNAATMIEKARQN--YPHLHFDVADARN 111
Query: 262 VELPVESVDIIIS----EWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ + +D + S W+ ++ I + ++ LK G
Sbjct: 112 FRVD-KPLDAVFSNAMLHWV-------KEPEAAIASIHQALKSGGRF 150
Score = 33.2 bits (76), Expect = 0.083
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+ ++D+G GTG L+ AQ+G A+V + +
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSG-AEVLGTDNA 88
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 36.7 bits (86), Expect = 0.006
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI 252
I ++ V++VG GTG L+ Q K++ IE D E ++ + K+ D ++
Sbjct: 23 IAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL-D--REMVENL-KSIGDERL 78
Query: 253 EVYHK 257
EV ++
Sbjct: 79 EVINE 83
Score = 34.4 bits (80), Expect = 0.036
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I ++ V++VG GTG L+ Q K++ IE
Sbjct: 23 IAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 37.0 bits (85), Expect = 0.007
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 25/125 (20%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYD------- 249
V+D+G GTG A++ KV + D+ +++ RK
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGV---DMLDNQLEVARKYVEYHAEKFFG 137
Query: 250 ----SQIEVYHKLLEDV------ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLK 299
S + +E++ +P SVDI+IS + T ++ +R L+
Sbjct: 138 SPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCV---CNLSTNKLALFKEIHRVLR 194
Query: 300 PDGVV 304
G +
Sbjct: 195 DGGEL 199
Score = 28.5 bits (63), Expect = 3.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQA 169
V+D+G GTG A++
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKL 104
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 36.4 bits (84), Expect = 0.008
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 203 KHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
+ D+G G G + + + G + I D + ++ L
Sbjct: 35 LNGYDLGCGPGNSTELLTDRYGVNVITGI---DSDDDMLEKAADR--LPNTNFGKADLAT 89
Query: 262 VELPVESVDIIIS 274
+ + D++ +
Sbjct: 90 WKPA-QKADLLYA 101
Score = 31.7 bits (72), Expect = 0.23
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 150 KHVIDVGAGTGILS-IFAAQAGAAKVFAIEKS 180
+ D+G G G + + + G + I+
Sbjct: 35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSD 66
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 35.6 bits (81), Expect = 0.012
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
V++VG G I + +A + + IE +D ++ + + ++ L
Sbjct: 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLW 117
Query: 260 EDV--ELPVESVDIII------SEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
EDV LP D I+ SE + F + + R LKP GV+
Sbjct: 118 EDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAF----RLLKPGGVLT 167
Score = 26.8 bits (58), Expect = 8.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
V++VG G I + +A + + IE
Sbjct: 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIEC 91
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 36.0 bits (83), Expect = 0.013
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK---L 258
++D+G G G++ + AKV +++S +A + R N + E + +
Sbjct: 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMA---VASSRLNVETNMPEALDRCEFM 280
Query: 259 LEDV--ELPVESVDIIIS-------EWMGYFLLFETMIDSVIDARNRFLKPDG----VVC 305
+ + + + ++ + + M AR LK +G V
Sbjct: 281 INNALSGVEPFRFNAVLCNPPFHQQHALTDNVA-WEMFH---HARRC-LKINGELYIVA- 334
Query: 306 PNRF 309
NR
Sbjct: 335 -NRH 337
Score = 29.9 bits (67), Expect = 1.2
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKS 180
++D+G G G++ + AKV +++S
Sbjct: 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES 255
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 35.5 bits (82), Expect = 0.014
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLL 259
K + D+G GTG ++ A +V + D++ E ++I ++ + + ++ + + +
Sbjct: 34 GKRIADIGCGTGTATLLLAD--HYEVTGV---DLSEEMLEIAQEKAMETNRHVDFWVQDM 88
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
++ELP I I +L E + D+ R L G +
Sbjct: 89 RELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
Score = 27.4 bits (61), Expect = 5.6
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 116 SYED-AHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQ 168
+YE A+++ E+++D V + + +L + K + D+G GTG ++ A
Sbjct: 3 AYEQFAYVYDELMQD-VPYPEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLAD 53
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 35.5 bits (82), Expect = 0.016
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVYHKLL 259
V+DVG G G ++ A A +V I I+ ++ +++ +
Sbjct: 64 RVLDVGCGIGKPAVRLATARDVRVTGI---SISRPQVNQANARATAAGLANRVTFSYADA 120
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
D+ S D + + M D + R L+P G V
Sbjct: 121 MDLPFEDASFDAVWALES-----LHHMPDRGRALREMARVLRPGGTV 162
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAI 177
V+DVG G G ++ A A +V I
Sbjct: 64 RVLDVGCGIGKPAVRLATARDVRVTGI 90
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 35.5 bits (81), Expect = 0.017
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETID 241
+ T SYKS + V+D+ G GI I ++ IE++D ET
Sbjct: 79 SGAVTSSYKSRFI-----REGTKVVDLTGGLGIDFIALMSKA-SQGIYIERND---ETAV 129
Query: 242 IIRKN-----KYDSQIEVYHKLLEDV--ELPVESVDIIISEWM 277
R N + + ++ + D I +
Sbjct: 130 AARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172
Score = 29.7 bits (66), Expect = 1.2
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHV 205
+ V+D+ G GI I ++ IE++ +A N L N
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERN--DETAV---AARHNIPLLLNEGKD 144
Query: 206 IDVGAG 211
+++ G
Sbjct: 145 VNILTG 150
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 34.8 bits (81), Expect = 0.019
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 201 NNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHKL 258
+ +++G G + A + KV A E + +E I +N + ++ +
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114
Query: 259 LEDVELPVESVDIIIS 274
+ + + D+I S
Sbjct: 115 IIK-GVVEGTFDVIFS 129
Score = 26.7 bits (60), Expect = 8.6
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 148 NNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKS 180
+ +++G G + A + KV A E
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVD 88
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 35.4 bits (81), Expect = 0.020
Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 53/179 (29%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGA---AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKH 204
+++ ++D GA G +V+ IE P R + + + N + + +
Sbjct: 226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE----PDR-INLQ-TLQNVLRRYTDTN 279
Query: 205 VID--------VGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-------------- 242
G T + V + + ID+
Sbjct: 280 FASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDDAPTFI 339
Query: 243 ------------------IRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLF 283
I ++K I YH+ + ++L + I+S Y +
Sbjct: 340 KMDIEGSELSALKGARRAISEHKPKLAISAYHRSTDLLDLT----NYILSIRPDYQIGL 394
Score = 35.4 bits (81), Expect = 0.022
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 25/144 (17%)
Query: 177 IEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---AKVFAIEKS 233
+ P T ++S +L +++ ++D GA G +V+ IE
Sbjct: 205 YHEVERPYSTLYFRSGLLRFS---DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPD 261
Query: 234 DIAYE----TIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFE----- 284
I + + + S+I V+ + V G F+
Sbjct: 262 RINLQTLQNVLRRYTDTNFASRITVHGCGAGENT---IRVPFNHEGGHGGFVKPADADHE 318
Query: 285 -------TMIDSVIDARNRFLKPD 301
ID +ID F+K D
Sbjct: 319 PADLIDVRPIDDIIDDAPTFIKMD 342
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 35.6 bits (81), Expect = 0.021
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTG-ILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYD 249
S + L +D+G+G G + A + G A F E D A + + I++ +
Sbjct: 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASD-LTILQYEELK 290
Query: 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYF----------LLFETMIDSVIDARNRFLK 299
+ ++Y L +VE ++ + + LF+ ++ ++ + K
Sbjct: 291 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAK 350
Query: 300 PDGVV------CPNRFTLS 312
+ + ++
Sbjct: 351 VGCKIISLKSLRSLTYQIN 369
Score = 29.1 bits (64), Expect = 2.3
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 138 SAILNNNSLFNNKHVIDVGAGTG-ILSIFAAQAGAAKVFAIEKSGTPIR 185
S + L +D+G+G G + A + G A F E
Sbjct: 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASD 280
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 34.9 bits (80), Expect = 0.021
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 25/126 (19%)
Query: 192 AILNNKSLF--NNKHVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSDIAYE---TIDIIRK 245
IL L ++ V+ +GA +G +S A ++A+E S +E + R
Sbjct: 46 MILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN 105
Query: 246 NKYDSQIEVYHKLLEDVELP------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLK 299
N LL D P VE VD+I + + + I+ + FLK
Sbjct: 106 NII--------PLLFDASKPWKYSGIVEKVDLIYQD-----IAQKNQIEILKANAEFFLK 152
Query: 300 PDGVVC 305
G V
Sbjct: 153 EKGEVV 158
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 35.0 bits (80), Expect = 0.025
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA--KVFAIEKSDIAYETI-DIIRKNKYD 249
I+ + +++ G G+G L++F A +V + E + + + I+ +D
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144
Query: 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
++ + K + + + E+VD +I L + V++ + LKP G
Sbjct: 145 DRVTIKLKDIYE-GIEEENVDHVI--------LDLPQPERVVEHAAKALKPGGFFV 191
Score = 29.6 bits (66), Expect = 1.1
Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 15/143 (10%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAA--KVFAIEKSGTPIRTESYKSAILNNKSLFNNK 203
+ +++ G G+G L++F A +V + E IR + K A N K +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE-----IREDFAKLAWENIKWAGFDD 145
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
V I + + + ++ Y V
Sbjct: 146 RVTIKL-KDIYEGIEEENVDHVILDLPQPERVVEHAAKALKP---GGFFVAYTPCSNQVM 201
Query: 264 LPVESVDIIISEWMGYFLLFETM 286
E + E+ YF+ T+
Sbjct: 202 RLHEK----LREFKDYFMKPRTI 220
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 35.0 bits (81), Expect = 0.028
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 208 VGAGT-GILSIFAA---QAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
+G G+ G+L++ G ++ + + D TIDII + ++ +EDV
Sbjct: 179 LGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT-YVDSRQTPVEDVP 237
Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
E +D I E G+ + ++ P+GV
Sbjct: 238 DVYEQMDFIY-EATGFPKHAIQSVQAL--------APNGVGA 270
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 34.2 bits (78), Expect = 0.034
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS-QIEVYHKLLEDVE 263
+ G G G + A V ++ S+ A + + + + +
Sbjct: 70 ALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR 128
Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
P E D+I +++ + + M + + LKPDG
Sbjct: 129 -PTELFDLIF-DYVFFCAIEPEMRPAWAKSMYELLKPDGE 166
Score = 28.1 bits (62), Expect = 3.5
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185
+ G G G + A V ++ S + +
Sbjct: 70 ALVPGCGGGHDVVAMASPE-RFVVGLDISESALA 102
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 34.4 bits (78), Expect = 0.037
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETID 241
I + + V D AG G S A G V A E+ +
Sbjct: 74 LIAKAVNHTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLS 122
Score = 32.1 bits (72), Expect = 0.22
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
I + + V D AG G S A G V A E+
Sbjct: 74 LIAKAVNHTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQH 114
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 33.7 bits (78), Expect = 0.045
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 29/116 (25%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETID-IIRKNKYDSQIEVYHKL 258
N K +D+G+ TG + Q GA V+A+ D+ + IR D ++ V +
Sbjct: 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYAL---DVGTNQLAWKIRS---DERVVVMEQF 89
Query: 259 ----LEDVELPVESVDII------ISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ IS +D ++ L+ +G V
Sbjct: 90 NFRNAVLADFEQGRPSFTSIDVSFIS------------LDLILPPLYEILEKNGEV 133
Score = 33.0 bits (76), Expect = 0.10
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
N K +D+G+ TG + Q GA V+A+
Sbjct: 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYAL 66
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 34.4 bits (78), Expect = 0.046
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 202 NKHVIDVGAGTG-ILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
+ +D+G+G G ++ AA + +EK+DI + + ++ ++ Y K
Sbjct: 174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE-TMDREFRKWMKWYGKKHA 232
Query: 261 DVELPVESVDIIISEWMGYF----------LLFETMIDSVIDARNRFLKPDGVV------ 304
+ L E D + EW F +D + R +K G +
Sbjct: 233 EYTL--ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF 290
Query: 305 CPNRFTLS 312
P F ++
Sbjct: 291 APLNFRIN 298
Score = 33.7 bits (76), Expect = 0.076
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 8/128 (6%)
Query: 66 SDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRH--DKYYFNSYEDAHI- 122
E D N I + L + + + RH + Y +S D
Sbjct: 84 KSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKL 143
Query: 123 -HAEMIKDTVRTE---SYKSAILNNNSLFNNKHVIDVGAGTG-ILSIFAAQAGAAKVFAI 177
+ E V E + +++ + ++ +D+G+G G ++ AA + +
Sbjct: 144 NNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGV 203
Query: 178 EKSGTPIR 185
EK+ P +
Sbjct: 204 EKADIPAK 211
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 33.7 bits (78), Expect = 0.047
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN--KY 248
AI K + + VIDVG G+G +++ A V A++ S A + + R+N ++
Sbjct: 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDA---LAVARRNAERF 77
Query: 249 DSQIEVYH----KLLEDVELPVESVDIIIS 274
+ ++ + L + I+S
Sbjct: 78 GAVVDWAAADGIEWLIERAERGRPWHAIVS 107
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 33.8 bits (77), Expect = 0.049
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
F V+D G G +I A G +V AI+ + + +IE
Sbjct: 74 SQSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFI 132
Query: 256 HKLLEDVELPVESVDIII 273
+ D++
Sbjct: 133 CGDFLLLA-SFLKADVVF 149
Score = 30.0 bits (67), Expect = 0.79
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
F V+D G G +I A G +V AI+
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDID 109
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 34.0 bits (79), Expect = 0.054
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
+ ++D+ +G G I+ A+ V + I++ R+N + ++ ++ D
Sbjct: 291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFD---SNEFAIEMARRNVEINNVDAEFEVASD 346
Query: 262 VELPVESVDIII 273
E+ V+ D +I
Sbjct: 347 REVSVKGFDTVI 358
Score = 29.4 bits (67), Expect = 1.7
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
+ ++D+ +G G I+ A+ V +
Sbjct: 291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFD 319
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 33.8 bits (76), Expect = 0.063
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIA-------YETIDIIRKNKY 248
+ + V+D+G G G + + K+ + +D++ YE + R ++Y
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 249 DSQIEVY------HKLLEDVELPVESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPD 301
E L++ P DI ++ Y D ++ L P
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148
Query: 302 GVVC 305
G
Sbjct: 149 GYFI 152
Score = 27.2 bits (59), Expect = 8.3
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR 185
+ V+D+G G G + + K+ + + ++
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVK 71
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 33.3 bits (77), Expect = 0.069
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 37/94 (39%)
Query: 105 KTRRHDKYYF---NSYEDA-------------HIHAEMIKDTVRTESYKSAILNNNSLFN 148
T R ++ N Y D+ H+HA E +L + L
Sbjct: 33 ATDRS---HYAKCNPYMDSPQSIGFQATISAPHMHAYA------LE-----LLFDQ-LHE 77
Query: 149 NKHVIDVGAGTG----ILSIFAAQAGAAKVFAIE 178
+DVG+G+G + G KV I+
Sbjct: 78 GAKALDVGSGSGILTACFARMVGCTG--KVIGID 109
Score = 29.1 bits (66), Expect = 1.6
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 203 KHVIDVGAGTG----ILSIFAAQAGAAKVFAIE 231
+DVG+G+G + G KV I+
Sbjct: 79 AKALDVGSGSGILTACFARMVGCTG--KVIGID 109
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 33.7 bits (77), Expect = 0.070
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD--IAYETIDIIRKNKYDSQIEVYHKLLED 261
++D G G G + A + ++V + S + R+ + D + + D
Sbjct: 120 TLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGN-RRARELRIDDHVRSRVCNMLD 178
Query: 262 VELPVESVDIIIS----EWMGYFLLFETMIDSVIDARNRFLKPDGV 303
+V + ++ LF +RFLK G
Sbjct: 179 TPFDKGAVTASWNNESTMYVDLHDLFSEH--------SRFLKVGGR 216
Score = 28.7 bits (64), Expect = 2.7
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAI 177
++D G G G + A + ++V +
Sbjct: 120 TLVDAGCGRGGSMVMAHRRFGSRVEGV 146
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.7 bits (77), Expect = 0.084
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQ------AGAAKVFAIEKSGTPIRTESYKS 191
F +K+V+ GAG G SI A+ G AKV + T+ Y+S
Sbjct: 474 FKDKYVLITGAGKG--SI-GAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQS 521
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 33.1 bits (75), Expect = 0.087
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYE-TIDIIRKNKYD 249
I + +ID G G+G + A+A + KVFA EK + + + K
Sbjct: 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 163
Query: 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
++ + + + + + VD + + + ID LK G
Sbjct: 164 ERVTIKVRDISE-GFDEKDVDALFLD--------VPDPWNYIDKCWEALKGGGRFA 210
Score = 32.3 bits (73), Expect = 0.17
Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 16/141 (11%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNK 203
+ +ID G G+G + A+A + KVFA E R E K A +N + +
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYE-----KREEFAKLA-ESNLTKWGLI 163
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNK----YDSQIEVYHKLL 259
+ + A + + + + + ++ + L
Sbjct: 164 ERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 223
Query: 260 EDVE----LPVESVDIIISEW 276
+ ++ + +E + + +
Sbjct: 224 KKLQELPFIRIEVWESLFRPY 244
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 33.1 bits (75), Expect = 0.092
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 19/105 (18%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
V++ G G G + A+ A D + E + + R N +VY +
Sbjct: 50 TRVLEAGCGHGPDAARFGPQA-ARWAAY---DFSPELLKLARAN--APHADVYEWNGKG- 102
Query: 263 ELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
ELP +I+S G + + PD
Sbjct: 103 ELPAGLGAPFGLIVS-RRGPTSVILRL--------PELAAPDAHF 138
Score = 31.2 bits (70), Expect = 0.31
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
V++ G G G + A+ A + S
Sbjct: 50 TRVLEAGCGHGPDAARFGPQA-ARWAAYDFS 79
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 33.0 bits (76), Expect = 0.092
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETID-IIRKNKYDSQIEVYHKL 258
+ ID+GA TG + Q GA V+A+ D+ + +R+ D ++ +
Sbjct: 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAV---DVGTNQLVWKLRQ---DDRVRSMEQY 137
Query: 259 ----LEDVELPVESVDII------ISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
E V+ IS ++ ++ A + L G V
Sbjct: 138 NFRYAEPVDFTEGLPSFASIDVSFIS------------LNLILPALAKILVDGGQV 181
Score = 32.6 bits (75), Expect = 0.12
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
+ ID+GA TG + Q GA V+A+
Sbjct: 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAV 114
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 32.6 bits (75), Expect = 0.12
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
+ + +L + V+++G G GIL+ A+ A KV+ IE
Sbjct: 42 AVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEI 80
Score = 32.6 bits (75), Expect = 0.13
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
+ + +L + V+++G G GIL+ A+ A KV+ IE
Sbjct: 42 AVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEI 80
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 32.1 bits (73), Expect = 0.13
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
K V+D+G TG+++ + V + D+ ++ R V LL
Sbjct: 23 EMKIVLDLGTSTGVITEQLRK--RNTVVST---DLNIRALESHRGGNL-----VRADLLC 72
Query: 261 DVELPVESVDIIISE 275
+ ESVD+++
Sbjct: 73 --SINQESVDVVVFN 85
Score = 27.8 bits (62), Expect = 3.2
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNN 202
K V+D+G TG+++ + V + + + ES++ L L +
Sbjct: 23 EMKIVLDLGTSTGVITEQLRK--RNTVVSTDLN--IRALESHRGGNLVRADLLCS 73
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 32.7 bits (74), Expect = 0.14
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
N+ V+D+ AG G +I A+ V+AIEK+ AY + K + +
Sbjct: 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN 178
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
DVEL + +I MGY +D FLK GV+
Sbjct: 179 RDVELKDVADRVI----MGYVHKTHKFLDKTF----EFLKDRGVI 215
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 32.2 bits (74), Expect = 0.16
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 38/97 (39%)
Query: 105 KTRRHDKYYF---NSYEDA-------------HIHAEMIKDTVRTESYKSAILNNNSLFN 148
+T R ++ N Y DA H+HA E L ++ L
Sbjct: 40 ETDRK---HYSPRNPYMDAPQPIGGGVTISAPHMHAFA------LE-----YLRDH-LKP 84
Query: 149 NKHVIDVGAGTG----ILSIFAAQAGA---AKVFAIE 178
++DVG+G+G + G ++ IE
Sbjct: 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE 121
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 204 HVIDVGAGTG----ILSIFAAQAGA---AKVFAIE 231
++DVG+G+G + G ++ IE
Sbjct: 87 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE 121
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 32.4 bits (73), Expect = 0.17
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 195 NNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYET-IDIIRKNKYDSQI 252
+ + ID+G G + A E D+ + + +N I
Sbjct: 59 QDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLI 118
Query: 253 EVYHKLLED------VELPVESVDIIIS 274
+V + E D +
Sbjct: 119 KVVKVPQKTLLMDALKEESEIIYDFCMC 146
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 31.7 bits (73), Expect = 0.21
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I+ N L + ++ ++G+G G ++ Q V AIE
Sbjct: 22 IMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEI 60
Score = 31.7 bits (73), Expect = 0.22
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I+ N L + ++ ++G+G G ++ Q V AIE
Sbjct: 22 IMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEI 60
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 32.0 bits (73), Expect = 0.24
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 204 HVIDVGAGTG----ILSIFAAQAGAAKVFAIEK-SDIAYETIDIIRKNKYDSQIEVYH 256
V+++G GTG ++S + G V ++E I + + + +
Sbjct: 78 RVLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIE-NVIFVC 132
Score = 28.9 bits (65), Expect = 2.0
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 151 HVIDVGAGTG----ILSIFAAQAGAAKVFAIE 178
V+++G GTG ++S + G V ++E
Sbjct: 78 RVLEIGGGTGYNAAVMSRVVGEKG--LVVSVE 107
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 31.6 bits (71), Expect = 0.26
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 16/120 (13%)
Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN-K 247
S I+ L +++VG G+G +S + A G + +E+ + + N
Sbjct: 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK---KAMDNLS 156
Query: 248 YDSQIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
I D+ + + D +I++ + + + +KP V
Sbjct: 157 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIA--------SMMKPGSVAT 208
Score = 28.9 bits (64), Expect = 2.1
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIRTESYKSAILN 195
S I+ L +++VG G+G +S + A G + +E ++ K A+ N
Sbjct: 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVE-----RDEDNLKKAMDN 154
Query: 196 NKSLFNNKHVIDV 208
++ +V
Sbjct: 155 LSEFYDIGNVRTS 167
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 31.7 bits (73), Expect = 0.27
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 201 NNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
++D+G GTG +++ A++ ++ A+ D + + + ++N I+ H L
Sbjct: 109 QPCRILDLGTGTGAIALALASERPDCEIIAV---DRMPDAVSLAQRNAQHLAIKNIHILQ 165
Query: 260 EDV--ELPVESVDIIIS 274
D L + +I+S
Sbjct: 166 SDWFSALAGQQFAMIVS 182
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 31.8 bits (73), Expect = 0.29
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
K V+++ + T S+ AA GA +++ + + + +
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRS---RALSLAH 254
Score = 28.7 bits (65), Expect = 2.8
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT 182
K V+++ + T S+ AA GA +++ +
Sbjct: 210 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKR 246
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 31.2 bits (70), Expect = 0.39
Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-----IRKN--KY 248
++ L N +D+GA G + + V++++ +A +D +R++ K+
Sbjct: 206 DERLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMAQSLMDTGQVTWLREDGFKF 264
Query: 249 DSQIEVYHKLLEDVELPVESVDIIISEWM 277
++ D+ V ++++W+
Sbjct: 265 RPTRSNISWMVCDMVEKPAKVAALMAQWL 293
Score = 27.8 bits (61), Expect = 5.3
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
L N +D+GA G + + V++++
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNG 242
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 31.2 bits (71), Expect = 0.39
Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 6/110 (5%)
Query: 63 PACSDLEEKNAEIDMRNEDIAQMRH---LMQDMLNKKEEDEEGENKTRRHDKYYFNSYED 119
+ ++ ++ + D + + + +G
Sbjct: 80 SDSAMFLDRQSKFYVG--DAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVW 137
Query: 120 AHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA 169
M + + A L N + V+D+ A G+ I AQ
Sbjct: 138 VQFAKAM-SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQH 186
Score = 29.6 bits (67), Expect = 1.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 198 SLFNNKHVIDVGAGTGILSIFAAQA 222
+ V+D+ A G+ I AQ
Sbjct: 162 NKIEPLKVLDISASHGLFGIAVAQH 186
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 30.8 bits (69), Expect = 0.42
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 18/120 (15%)
Query: 194 LNNKSLFNNKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKSDIAYETIDIIRKNKYDSQ 251
L + V+ +GA +G + K + +E S +++ +
Sbjct: 69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR--ELLLVAQRRPN 126
Query: 252 IEVYHKLLEDVELP------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
I LL D P VE+VD++ + + D I FLK +G +
Sbjct: 127 IFP---LLADARFPQSYKSVVENVDVLYVD-----IAQPDQTDIAIYNAKFFLKVNGDML 178
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 31.0 bits (71), Expect = 0.43
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 202 NKHVIDVGAGT-GILSIFAAQA-GAAKVFAIEKSD 234
NK+VI +GAGT G+L+I A A GA V AI+ S
Sbjct: 161 NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISS 195
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 30.9 bits (70), Expect = 0.51
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 178 EKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAY 237
++ S +A++ + + V+D G+G + I A + I +
Sbjct: 196 YDHPAHLK-ASIANAMIE-LAELDGGSVLDPMCGSGTILIELALRRYS--GEIIGIEKYR 251
Query: 238 ETIDIIRKN----KYDSQIEVYHKLLEDVELPVESVDIIIS 274
+ + N +I+ + V+SVD IS
Sbjct: 252 KHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAIS 292
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 30.6 bits (70), Expect = 0.52
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I+ +L V ++G G G L+ A+ + +V +IE
Sbjct: 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIEL 59
Score = 30.6 bits (70), Expect = 0.56
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I+ +L V ++G G G L+ A+ + +V +IE
Sbjct: 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIEL 59
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 30.5 bits (69), Expect = 0.55
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
+++VGAGTG + + + + + + + + R+ + E +
Sbjct: 39 SLLEVGAGTG---YWLRRLPYPQKVGV---EPSEAMLAVGRRR--APEATWVRAWGEALP 90
Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
P ES D+++ + L F ++ V+ R L+P G +
Sbjct: 91 FPGESFDVVL---LFTTLEFVEDVERVLLEARRVLRPGGALV 129
Score = 30.2 bits (68), Expect = 0.78
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
+++VGAGTG + + + +E S
Sbjct: 39 SLLEVGAGTG---YWLRRLPYPQKVGVEPS 65
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 30.3 bits (69), Expect = 0.59
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 37/96 (38%)
Query: 105 KTRRHDKYYF---NSYEDA-------------HIHAEMIKDTVRTESYKSAILNNNSLFN 148
+ R + Y D H+HA + L N L
Sbjct: 36 QVDRGK---YIKEIPYIDTPVYISHGVTISAPHMHALS------LK-----RLINV-LKP 80
Query: 149 NKHVIDVGAGTGILS-IFAAQAG-----AAKVFAIE 178
IDVG+G+G L+ A + + V +E
Sbjct: 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLE 116
Score = 26.8 bits (60), Expect = 9.1
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 203 KHVIDVGAGTGILS-IFAAQAG-----AAKVFAIE 231
IDVG+G+G L+ A + + V +E
Sbjct: 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLE 116
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 30.7 bits (70), Expect = 0.59
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 208 VGAGT-GILSIFAAQA-GAAKVFAIEKSDI---------AYETIDIIRKNKYDSQIEVYH 256
+G G G+L++ A+ GA V + A T+D + V
Sbjct: 189 LGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGD-------VVE 241
Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSV 290
+ V L VD++I E G +
Sbjct: 242 AIAGPVGLVPGGVDVVI-ECAGVAETVKQSTRLA 274
Score = 28.3 bits (64), Expect = 3.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 155 VGAGT-GILSIFAAQA-GAAKVFAIEKS 180
+G G G+L++ A+ GA V +
Sbjct: 189 LGGGVIGLLTVQLARLAGATTVILSTRQ 216
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 30.7 bits (69), Expect = 0.62
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 20/105 (19%)
Query: 203 KHVIDVGAGTG-ILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
V+D+G G G FA F + D++ I K Q+
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKR--YPQVTFCVASSHR 141
Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVV 304
+ S+D II I + A R +KP G V
Sbjct: 142 LPFSDTSMDAIIR------------IYAPCKAEELARVVKPGGWV 174
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 30.4 bits (69), Expect = 0.74
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
F + +DV + G ++ G +V A++ S A + +N
Sbjct: 208 FRGERALDVFSYAGGFAL-HLALGFREVVAVDSSAEA---LRRAEEN 250
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 30.4 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 204 HVIDVGAGTGILSI-FAAQAGA-AKVFAIEKSDIA 236
++++G G G LS A Q G+ V I DIA
Sbjct: 46 KILEIGCGQGDLSAVLADQVGSSGHVTGI---DIA 77
Score = 30.0 bits (67), Expect = 1.00
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 151 HVIDVGAGTGILSIFAAQA 169
++++G G G LS A
Sbjct: 46 KILEIGCGQGDLSAVLADQ 64
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.79
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 69 EEKNAEIDMRNEDIAQMRHLMQDMLNKKEED---------EEGENKTRRHDKYYFNSYED 119
EE+ + + M ++ K E+ E+ + R DK ++ +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 30.4 bits (69), Expect = 0.84
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 208 VGAGT-GILSIFAAQA-GAAKVFAIEKSD 234
+G G G+ ++ + GA+KV E S+
Sbjct: 220 LGGGPIGLAAVAILKHAGASKVILSEPSE 248
Score = 28.5 bits (64), Expect = 2.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 155 VGAGT-GILSIFAAQA-GAAKVFAIEKS 180
+G G G+ ++ + GA+KV E S
Sbjct: 220 LGGGPIGLAAVAILKHAGASKVILSEPS 247
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 30.0 bits (67), Expect = 0.86
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 23/116 (19%)
Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
+ + + V D G G L+ V D+A + +
Sbjct: 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIRN----PVHCF---DLASLDPRVTVCD-- 105
Query: 249 DSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
+ V L ESVD+ + L T I ++ NR LKP G++
Sbjct: 106 ----------MAQVPLEDESVDVAVFC----LSLMGTNIRDFLEEANRVLKPGGLL 147
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 30.0 bits (68), Expect = 0.91
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I+ + ++ V+++G GTG L++ A KV I+
Sbjct: 33 KIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDI 72
Score = 30.0 bits (68), Expect = 0.95
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I+ + ++ V+++G GTG L++ A KV I+
Sbjct: 33 KIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDI 72
>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3*
2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3
2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...
Length = 64
Score = 27.6 bits (62), Expect = 0.94
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
GAAK F G + IL K+
Sbjct: 8 GAAKRFKKTGKGGFKHKHANLRHILTKKA 36
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 29.9 bits (68), Expect = 1.0
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 38/130 (29%)
Query: 72 NAEIDMRNEDIAQMRHLMQDMLNKK--EEDEEGEN---KTRRH----DKYYFNSYEDA-- 120
+ + M +++ + +ML + +E E K R+ DKY ++ D
Sbjct: 7 DFPLMMDEKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPL 66
Query: 121 -----------HIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILS-IFAAQ 168
H+ A M E I N L ++++VG G+G + + +
Sbjct: 67 PIPAGQTVSAPHMVAIM------LE-----IAN---LKPGMNILEVGTGSGWNAALISEI 112
Query: 169 AGAAKVFAIE 178
V+ IE
Sbjct: 113 VK-TDVYTIE 121
Score = 28.7 bits (65), Expect = 2.3
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 202 NKHVIDVGAGTGILS-IFAAQAGAAKVFAIEK-SDIAYETIDIIRKNKYDSQIEVYH 256
++++VG G+G + + + V+ IE+ ++ + + + V
Sbjct: 92 GMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-NVHVIL 146
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 203 KHVIDVGAGT-GILSIFAAQAGAAKVFAIEKSD 234
V+ +GAG G++S+ AA+A A V +S
Sbjct: 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 202
Score = 28.7 bits (65), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 150 KHVIDVGAGT-GILSIFAAQAGAAKVFAIE 178
V+ +GAG G++S+ AA+A A V
Sbjct: 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTA 199
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 29.9 bits (68), Expect = 1.3
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 23/106 (21%)
Query: 89 MQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHA--EMIKDTVR----TESYKSAILN 142
M+++L E+ + Y + E I ++ ++T + L+
Sbjct: 2 MKNLLGYSEDYLKERKG-------YITAKE---ICNQPKLWRETYEIILSQREKLKSFLD 51
Query: 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK-SGTPIRTE 187
N + N ++ GAG+ S F + + I
Sbjct: 52 NFAKKPNAKIVITGAGS---SAFVGNSVV---SYLNAKENIKIEAI 91
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 29.1 bits (66), Expect = 1.4
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVYH 256
++++G G +I AQA A + +IE+ + + K+ +S+IE+
Sbjct: 56 ARILEIGTAIGYSAIRMAQALPEATIVSIERDE---RRYEEAHKHVKALGLESRIELLF 111
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 29.1 bits (66), Expect = 1.4
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 34/125 (27%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
+ ++++++G G +I+ A+ +V +E S+ + DI R N + ++
Sbjct: 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASE---KHADIARSNIERANLNDRV 112
Query: 253 EVYHKLLEDVELPVESVDIIISEWMGYF-LLFETMIDSVIDA--RN---------RFLKP 300
EV L ++S+ I +E F +F IDA +N + +P
Sbjct: 113 EVRTG------LALDSLQQIENEKYEPFDFIF-------IDADKQNNPAYFEWALKLSRP 159
Query: 301 DGVVC 305
V+
Sbjct: 160 GTVII 164
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 28.9 bits (65), Expect = 1.6
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 24/97 (24%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYD-- 249
+L V+D+G G G + I + ++ +D RK K
Sbjct: 71 TLLRLPLWQGPLRVLDLGTGAGFPGL---------PLKIVRPELELVLVDATRK-KVAFV 120
Query: 250 ---------SQIEVYHKLLEDVE---LPVESVDIIIS 274
E + E+ ++
Sbjct: 121 ERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 28.8 bits (65), Expect = 1.8
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
L K ++++G G +I+ A+ ++ +E + R+N D ++
Sbjct: 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADA---HHAQVARENLQLAGVDQRV 117
Query: 253 EVYHK 257
+
Sbjct: 118 TLREG 122
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 29.1 bits (66), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 208 VGAGT-GILSIFAAQA-GAAKVFAIEKSD 234
GAG G+L I A+A GA V E SD
Sbjct: 174 TGAGPLGLLGIAVAKASGAYPVIVSEPSD 202
>4f7a_A Putative uncharacterized protein; TPR-like protein, mucin O-glycan
binding, structural genomic center for structural
genomics, JCSG; HET: PGE; 1.85A {Bacteroides vulgatus}
Length = 511
Score = 29.4 bits (65), Expect = 1.9
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK-----SDIAYETIDIIRKNKYDSQIEVY 255
+ F KV A+ + I Y N D+Q E Y
Sbjct: 96 VAHKSTLITQDEAKYKHFYGATLILKVEAMHRITDTYGPIVYSKFGKNETNSVDTQEEAY 155
Query: 256 HKLLEDVE 263
+D++
Sbjct: 156 KAFFDDLD 163
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for
eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin
hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Length = 328
Score = 29.0 bits (64), Expect = 1.9
Identities = 9/45 (20%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 66 SDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHD 110
D ++ N+ + ++A+ + L++ +K + + EN R+H+
Sbjct: 247 MDTDQGNSMLSAIQSEVAKNQMLIE-EEVQKLKRYKIENIRRKHN 290
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 28.9 bits (64), Expect = 2.2
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 109 HDKYY--FNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTG-----I 161
H KY F + + + +++ + + I + ++ +G G G I
Sbjct: 12 HGKYVESFRRFLNHSTEHQCMQEFMD-KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQI 70
Query: 162 LSIFAAQAGAA--KVFAIEKSGTPIRTESYKSAILNNKSLFNNK 203
LS AQ +E S I YK + +L N K
Sbjct: 71 LSKVQAQYPGVCINNEVVEPSAEQI--AKYKELVAKTSNLENVK 112
Score = 27.0 bits (59), Expect = 9.4
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 21/135 (15%)
Query: 187 ESYKSAILNNKSLFNNKHVIDVGAGTG-----ILSIFAAQAGAA--KVFAIEKSDIA--- 236
+ I + ++ +G G G ILS AQ +E S
Sbjct: 38 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK 97
Query: 237 -------YETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
++ ++ + Y + + + ++ D I M Y++ I +
Sbjct: 98 YKELVAKTSNLENVKFAWHKETSSEYQSRMLE-KKELQKWDFIHMIQMLYYV---KDIPA 153
Query: 290 VIDARNRFLKPDGVV 304
+ + L + +
Sbjct: 154 TLKFFHSLLGTNAKM 168
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 28.8 bits (65), Expect = 2.3
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
L N K I+VG TG + A + K+ AI+ E +I + +I
Sbjct: 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDR---EAYEIGLPFIRKAGVEHKI 124
Query: 253 EVYH 256
Sbjct: 125 NFIE 128
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.9 bits (65), Expect = 2.3
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 150 KHVIDVGAGTGILSIFAAQA 169
+ VID+ G G +
Sbjct: 181 RTVIDLAGGHGTYLAQVLRR 200
Score = 28.9 bits (65), Expect = 2.3
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 203 KHVIDVGAGTGILSIFAAQA 222
+ VID+ G G +
Sbjct: 181 RTVIDLAGGHGTYLAQVLRR 200
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 28.7 bits (64), Expect = 2.5
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 188 SYKSAILNNKSLFNNK-HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRK 245
+ K L+ + V+D+G G G S +AA +V +++ + E I
Sbjct: 67 AAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAA--QKEVMSVKGYTLGIEGHEKPIHM 124
Query: 246 NKYDSQIEVYHKLLEDVELPVESVDIIIS 274
I + +P E D ++
Sbjct: 125 QTLGWNIVKFKDKSNVFTMPTEPSDTLLC 153
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 28.5 bits (64), Expect = 2.7
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEK-SDIAYETIDIIRKNKYDSQIEVYHK 257
V++VG GTG +++ + A KV A E + E ++ S+++V
Sbjct: 31 VVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG 84
Score = 28.1 bits (63), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 151 HVIDVGAGTGILSIFAAQAGAAKVFAIE 178
V++VG GTG +++ + A KV A E
Sbjct: 31 VVLEVGPGTGNMTVKLLEK-AKKVVACE 57
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 28.1 bits (63), Expect = 3.1
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 38/133 (28%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
+ K +I++G TG S+ A A K+ + S+ E ++ RK +++I
Sbjct: 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSE---EWTNVARKYWKENGLENKI 114
Query: 253 EVYH--------KLLEDVELPVESVDIIISEWMGYF-LLFETMIDSVIDA--RN------ 295
+ L++ P + D L F +DA N
Sbjct: 115 FLKLGSALETLQVLIDSKSAPSWASDFAFGP--SSIDLFF-------LDADKENYPNYYP 165
Query: 296 ---RFLKPDGVVC 305
+ LKP G++
Sbjct: 166 LILKLLKPGGLLI 178
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 28.5 bits (64), Expect = 3.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA 222
L + K ++D+G TG + Q
Sbjct: 170 KALEIVFSHHPKRLLDIGGNTGKWATQCVQY 200
Score = 28.5 bits (64), Expect = 3.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 150 KHVIDVGAGTGILSIFAAQA 169
K ++D+G TG + Q
Sbjct: 181 KRLLDIGGNTGKWATQCVQY 200
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8
2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8
2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Length = 65
Score = 26.0 bits (58), Expect = 3.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
GA K I SG + ++ K + KS
Sbjct: 9 GAKKRVKITASGKVVAMKTGKRHLNWQKS 37
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 27.9 bits (63), Expect = 3.3
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 203 KHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVYH 256
+ V+ G G G S + A+A +++V I+ + ++ R+ ++E+
Sbjct: 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDR---DNVEHARRMLHDNGLIDRVELQV 114
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 28.2 bits (64), Expect = 3.3
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
I++ ++++G G G L+ + + +E
Sbjct: 21 IVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEI 59
Score = 28.2 bits (64), Expect = 3.5
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 232
I++ ++++G G G L+ + + +E
Sbjct: 21 IVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEI 59
>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 159
Score = 27.7 bits (61), Expect = 3.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKS 198
+AK F + G +R + K +L K+
Sbjct: 97 ASAKRFRVTGKGKIVRRRAGKQHLLAKKN 125
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 28.0 bits (63), Expect = 3.9
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
L K V+++G TG ++ + A +V + ++ K + +I
Sbjct: 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINE---GWTKHAHPYWREAKQEHKI 114
Query: 253 EVYH 256
++
Sbjct: 115 KLRL 118
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 27.8 bits (61), Expect = 4.2
Identities = 12/73 (16%), Positives = 30/73 (41%)
Query: 198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK 257
+F+ + V+ VGAG G+ + + +++ + I + E +
Sbjct: 13 DVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFAD 72
Query: 258 LLEDVELPVESVD 270
LL+ +E ++ +
Sbjct: 73 LLQLLESQMQERN 85
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 27.6 bits (62), Expect = 5.3
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
L K V+++G G ++ A ++ A ++ I +K +I
Sbjct: 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDP---NATAIAKKYWQKAGVAEKI 126
Query: 253 EVYH 256
+
Sbjct: 127 SLRL 130
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural
genomics, J center for structural genomics, JCSG; HET:
MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Length = 286
Score = 27.6 bits (61), Expect = 5.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 126 MIKDTVRTESYKSAILNN--NSLFNNKHVIDVGAGTGILSIFAAQAGA 171
M DT +S +++ + + +I GAGTG+ +
Sbjct: 2 MSTDTCIKRPTRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDI 49
Score = 27.2 bits (60), Expect = 7.3
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGA 224
+ +I GAGTG+ +
Sbjct: 26 AGEPIIGGGAGTGLSAKSEEAGDI 49
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 27.3 bits (61), Expect = 5.7
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 203 KHVIDVGAGTGI--LSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-----KYDSQIEVY 255
I + G+ L I A + I+ E + S++
Sbjct: 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPES---EHQRQAKALFREAGYSPSRVRFL 114
Query: 256 HKLLEDV--ELPVESVDII 272
DV L +S ++
Sbjct: 115 LSRPLDVMSRLANDSYQLV 133
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 27.7 bits (62), Expect = 5.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 150 KHVIDVGAGTGILSIFAAQA 169
K +IDVG G G +S +
Sbjct: 192 KKMIDVGGGIGDISAAMLKH 211
Score = 27.7 bits (62), Expect = 5.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 203 KHVIDVGAGTGILSIFAAQA 222
K +IDVG G G +S +
Sbjct: 192 KKMIDVGGGIGDISAAMLKH 211
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 27.1 bits (59), Expect = 5.9
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH 256
+ + +++ G+G ++ AA+ V ++E SD A+ +++ +
Sbjct: 26 MAYEEAEVILEYGSGGS--TVVAAELPGKHVTSVE-SDRAW--ARMMKAWLAA------N 74
Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMID-----SVIDARNRFLKPDGVVCPNRF 309
E E+ + DI + G+ + + F PD V+ RF
Sbjct: 75 PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF 132
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 27.5 bits (60), Expect = 6.0
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 145 SLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNK 203
++ N K V+D + TGI I FA + A +V+ + S ++ +LN
Sbjct: 44 NILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELM-KRNVMLNFDGELRES 102
Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAY 237
+ G + I A
Sbjct: 103 KGRAILKGEKTIVINHDDANRLMAERHRYFHFID 136
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 27.3 bits (61), Expect = 6.3
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVY 255
L K +D+G TG ++ A A +V E E + R+ + + +I++
Sbjct: 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR 126
Query: 256 H 256
Sbjct: 127 L 127
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 27.6 bits (61), Expect = 6.6
Identities = 16/148 (10%), Positives = 35/148 (23%), Gaps = 27/148 (18%)
Query: 101 EGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTG 160
+ T + F Y+ + ++ ++ E + + N + H+ +
Sbjct: 210 VSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTCHMKKLTEFYK 269
Query: 161 ILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNN------------------ 202
+ + E K N N+
Sbjct: 270 NVDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYL 329
Query: 203 ---KHVIDVGA------GTGILSIFAAQ 221
++ G G G+LS F
Sbjct: 330 NIIYDIMMNGNKQSDRTGVGVLSKFGYI 357
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 27.2 bits (61), Expect = 6.7
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKN----KYDSQI 252
L K VID+G TG +I A + + + ++ + ++ +I
Sbjct: 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDE---KSTALAKEYWEKAGLSDKI 118
Query: 253 EVYH 256
+
Sbjct: 119 GLRL 122
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL;
1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A
2xiu_A
Length = 66
Score = 25.2 bits (56), Expect = 6.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 231 EKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV 269
+++ +TI+ I KNKY+ +++ K+ + P+E +
Sbjct: 22 ALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural GENO protein structure initiative, PSI; 1.75A
{Escherichia coli O157}
Length = 376
Score = 27.4 bits (61), Expect = 7.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI------EVYHKL 258
VID+ +G G LS+ AA+AG A+E A T N S + ++
Sbjct: 5 VIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINT---HAINFPRSLHVQEDVSLLNAEI 61
Query: 259 LEDVELPVESVDIII 273
++ +D II
Sbjct: 62 IKGFFKNDMPIDGII 76
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 26.9 bits (60), Expect = 7.4
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 22/87 (25%)
Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYD--------- 249
+ IDVG G G+ I +I + + + +D + K +
Sbjct: 63 YLQGERFIDVGTGPGLPGI---------PLSIVRPEAHFTLLDSLGK-RVRFLRQVQHEL 112
Query: 250 --SQIEVYHKLLEDVELPVESVDIIIS 274
IE +E+ D +IS
Sbjct: 113 KLENIEPVQSRVEEFP-SEPPFDGVIS 138
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 27.0 bits (59), Expect = 8.1
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 17/124 (13%)
Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIA-------YETIDIIRKNKYDSQIE 253
N + V+ + G G A + A + A Y ++ K KY
Sbjct: 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDY 107
Query: 254 VYHKLLEDV-------ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV-- 304
+ + D +II ++ ++ +V++ + G V
Sbjct: 108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLI 167
Query: 305 -CPN 307
+
Sbjct: 168 TTMD 171
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 27.0 bits (59), Expect = 8.4
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETID 241
+ +ID+G+G I + +A ++ + +D +
Sbjct: 58 ELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQ 96
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 26.8 bits (60), Expect = 8.6
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVF----AIEKSDIAYETIDIIR 244
+ A+ +K+++ GAG ++ A + +EK A I
Sbjct: 115 ARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEK---AEALAKEIA 171
Query: 245 KNKYDSQIEVYHKLLEDVELPVESVDIII 273
+ E +++ ++ VDIII
Sbjct: 172 EKLNKKFGEEVK--FSGLDVDLDGVDIII 198
>3sgh_A SUSD homolog; alpha-alpha superhelix, structural genomics, joint
center FO structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Bacteroides
thetaiotaomicron}
Length = 499
Score = 27.1 bits (59), Expect = 8.8
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 234 DIAY-ETIDIIRKNKYDSQIEVYHKLLEDVE 263
I Y + + YD++ V+H + +D++
Sbjct: 122 PIPYTQMKAGETEAPYDNEQTVWHAMFDDLD 152
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.1 bits (59), Expect = 9.0
Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 202 NKHVIDVGAGT-GILSIFAAQAGAAKVFAIEKSDIAYET-IDIIRKNKYDSQIEVYHKLL 259
+ + +G G + I + +V +E E +I D + V
Sbjct: 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG-VNVITGDE 181
Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
++ V ++ + +F + R++ + +
Sbjct: 182 TVIDGLEFDVLMVAALAEPKRRVFRNIH--------RYVDTETRII 219
Score = 27.1 bits (59), Expect = 9.1
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 149 NKHVIDVGAGT-GILSIFAAQAGAAKVFAIEKS 180
+ + +G G + I + +V +E
Sbjct: 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIE 155
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 27.0 bits (60), Expect = 9.0
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 31/145 (21%)
Query: 85 MRHLMQDMLNKKEEDEEGENK--------TRRHDKYY-----FNSYEDAHIHAEMIKDTV 131
MR+L + + EE R D +K +
Sbjct: 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWI 134
Query: 132 RTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKS 191
+ +LF G+G F + ++
Sbjct: 135 YE--------EDLTLFGVTL------GSGFWDFLDKNPEYNTSFNDAMAS---DSKLINL 177
Query: 192 AILNNKSLFNN-KHVIDVGAGTGIL 215
A+ + +F+ + ++DVG GTG
Sbjct: 178 ALRDCDFVFDGLESIVDVGGGTGTT 202
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 26.7 bits (58), Expect = 9.3
Identities = 5/46 (10%), Positives = 21/46 (45%)
Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
+ID+G+G + + +A + + + ++ + + + + +
Sbjct: 75 LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGA 120
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 27.1 bits (61), Expect = 9.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
V+D+ G G ++ A AA V +E
Sbjct: 287 EDRVLDLFCGMGNFTLPLATQ-AASVVGVE 315
Score = 27.1 bits (61), Expect = 9.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
V+D+ G G ++ A AA V +E
Sbjct: 287 EDRVLDLFCGMGNFTLPLATQ-AASVVGVE 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,832,834
Number of extensions: 295732
Number of successful extensions: 1218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 375
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)