BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy871
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 145/250 (58%), Gaps = 59/250 (23%)
Query: 4 IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
I+DW F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP
Sbjct: 4 IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
L + + F D G RRVWK+Y PA++ IVFLV
Sbjct: 64 LTI----AGMTFTTFDLGGHIQ-------------------ARRVWKNYLPAINGIVFLV 100
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
D +D ER ESK EL L+TD E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETIANVP 128
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
+LILGNKID+ A SEE +R+ FGLYG TTGK + E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188
Query: 240 GFRWLANYID 249
GFRW+A YID
Sbjct: 189 GFRWMAQYID 198
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 134/216 (62%), Gaps = 54/216 (25%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
+L +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT
Sbjct: 12 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 71
Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
RRVWK+Y PA++ IVFL VD
Sbjct: 72 DLGGHIQARRVWKNYLPAINGIVFL--------------------------------VDC 99
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
+D ER ESK EL L+TDE++A+ P+LILGNKID+ A SEE +R+ FGLYG TTGK +
Sbjct: 100 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 159
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct: 160 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 195
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 134/216 (62%), Gaps = 54/216 (25%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
+L +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT
Sbjct: 6 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 65
Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
RRVWK+Y PA++ IVFL VD
Sbjct: 66 DLGGGIQARRVWKNYLPAINGIVFL--------------------------------VDC 93
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
+D ER ESK EL L+TDE++A+ P+LILGNKID+ A SEE +R+ FGLYG TTGK +
Sbjct: 94 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 153
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct: 154 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 189
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 133/216 (61%), Gaps = 54/216 (25%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
+L +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT
Sbjct: 25 VLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 84
Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
RRVWK+Y PA++ IVFL VD
Sbjct: 85 DLGGHEQARRVWKNYLPAINGIVFL--------------------------------VDC 112
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
+D R ESK EL L+TDE++++ P+LILGNKID+ A SEE++R+ FGLYG TTGK
Sbjct: 113 ADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGN 172
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
E++ RP+E+FMCSVL RQGYG+GFRWL+ YID
Sbjct: 173 VTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 208
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 125/247 (50%), Gaps = 60/247 (24%)
Query: 2 FQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLG 61
+ I+ WF VL LGLW K GKLLFLGLDNAGKTTLLHMLK+DRLA PT HP L
Sbjct: 4 WDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 63
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
+ G + F D G RR+WKDYFP V+ IVFLVD
Sbjct: 64 I----GNIKFTTFDLGGHIQ-------------------ARRLWKDYFPEVNGIVFLVDA 100
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
+D ERF+ E++ EL L L P +
Sbjct: 101 ADPERFD--------------------------------EARVELDALFNIAELKDVPFV 128
Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241
ILGNKID A SE E+R GL TTG + R E RP+E+FMCSV+MR GY + F
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLN-TTG---SQRIE-GQRPVEVFMCSVVMRNGYLEAF 183
Query: 242 RWLANYI 248
+WL+ YI
Sbjct: 184 QWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 106/203 (52%), Gaps = 59/203 (29%)
Query: 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT----------------------RRV 104
GKLLFLGLDNAGKTTLLHMLK+DRLA PT HPT RR+
Sbjct: 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 105 WKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS 164
WKDYFP V+ IVFLVD +D ERF+ E++
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFD--------------------------------EARV 89
Query: 165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI 224
EL L L P +ILGNKID A SE E+R GL TTG + R E RP+
Sbjct: 90 ELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTG---SQRIE-GQRPV 144
Query: 225 ELFMCSVLMRQGYGDGFRWLANY 247
E+FMCSV+MR GY + F+WL+ Y
Sbjct: 145 EVFMCSVVMRNGYLEAFQWLSQY 167
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 26/196 (13%)
Query: 57 LGYLGLWT----KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAV 112
L + LW+ + K++ +GLDNAGKTT+L+ + + PT+ +
Sbjct: 3 LIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSN----VEEIVVK 58
Query: 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172
+ + D +E S + T S I+ +VD+ DRER +K EL +L
Sbjct: 59 NTHFLMWDIGGQESLRSSWN------TYYSNTEFIILVVDSIDRERLAITKEELYRMLAH 112
Query: 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL 232
E L VLI NK D G + EI +Y L S + P + C L
Sbjct: 113 EDLRKAAVLIFANKQDMKGCMTAAEISKYLTL------------SSIKDHPWHIQSCCAL 160
Query: 233 MRQGYGDGFRWLANYI 248
+G G W+ + I
Sbjct: 161 TGEGLCQGLEWMTSRI 176
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 25/129 (19%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTT 81
+LL LGLDNAGKTT+L + V T+ P LG+ + T + L + D G+ +
Sbjct: 20 RLLMLGLDNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGGQKS 74
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
L R W++YF + D ++++VD++DR+R ++ + ELQ LL +E
Sbjct: 75 L-------------------RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 142 SLASSIVFL 150
LA + + +
Sbjct: 116 RLAGATLLI 124
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 25/129 (19%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTT 81
+LL LGLDNAGKTT+L + V T+ P LG+ + T + L + D G+ +
Sbjct: 20 RLLMLGLDNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGGQKS 74
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
L R W++YF + D ++++VD++DR+R ++ + ELQ LL +E
Sbjct: 75 L-------------------RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 142 SLASSIVFL 150
LA + + +
Sbjct: 116 RLAGATLLI 124
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 23/128 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
+LL LGLDNAGKTT+L + V T+ P LG+ + T + L + + G
Sbjct: 3 RLLMLGLDNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGG--- 54
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
L R W++YF + D ++++VD++DR+R ++ + ELQ LL +E
Sbjct: 55 ---------------LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 99
Query: 143 LASSIVFL 150
LA + + +
Sbjct: 100 LAGATLLI 107
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 22/105 (20%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
+LL LGLDNAGKTT+L + + PTL R W
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 77
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
++YF + D ++++VD++DR+R ++ + ELQ LL +E LA + + +
Sbjct: 78 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 122
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 62 LW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
LW K ++L LGLD AGKTT+L+ L+ + PT+ ++
Sbjct: 12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
TS R + +C D ++++F+VD++D++R + EL +L +E L
Sbjct: 72 QTSIRPYW-------RCYYAD---TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
+L+ NK D+ GA S E+ + L E+ R + S + +G +
Sbjct: 122 LLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGEGITE 169
Query: 240 GFRWLANYI 248
G WL + I
Sbjct: 170 GLDWLIDVI 178
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLV 119
W + +L +GL +GKTT ++++ + + +PT+ R++ K + + L
Sbjct: 27 FWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG-----NVTIKLW 81
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
D + RF S E C S+IV++VD +D+E+ E SK+EL LL L P
Sbjct: 82 DIGGQPRFR-SMWERYC-----RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
VL+LGNK D GA E+E+ + L + ++
Sbjct: 136 VLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC 169
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPT 101
T+ ++L LGLD AGKTT+L+ L+ + +PT L
Sbjct: 2 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 61
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSI-VFLVDTSDRER 158
R W+ Y+ DA++++VD+ DR+R SKSEL +L +E L +I V + D E+
Sbjct: 62 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
++L LGLDNAGKTTLL L + ++ PT +V + F ++ D
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFN-------IKSVQSQGFKLNVWDIGGL 58
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + + + +++++D++DR+RFEE+ EL LL +E L+ PVLI NK
Sbjct: 59 RKIRPYWRSYFENTDI---LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D AA EI + L+ + R ++ CS L +G DG W+
Sbjct: 116 DLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
Query: 248 I 248
+
Sbjct: 164 V 164
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 23/138 (16%)
Query: 13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFL 72
G GL K ++L LGLD AGKTT+L+ LK L Q V T+ P +G+ + F
Sbjct: 314 GIEGLSNKEMRILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFN 369
Query: 73 GLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS 132
D G+ + R +W+ Y+ ++F+VD +DR+R +E++
Sbjct: 370 VWDVGGQDKI-------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 133 ELQCLLTDESLASSIVFL 150
EL ++ D + +I+ +
Sbjct: 411 ELHRIINDREMRDAIILI 428
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 22/108 (20%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
K ++L +GLD AGKTT+L+ LK + +PT+ R
Sbjct: 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIR 87
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
+W+ YF ++F+VD++DRER +ES ELQ +L ++ L +++ +
Sbjct: 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLV 135
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 77/204 (37%), Gaps = 66/204 (32%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
++L LGLDNAGKTTLL L + ++ PT R W
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 77
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
+ YF D +++++D++DR+RFEE T + +
Sbjct: 78 RSYFENTDILIYVIDSADRKRFEE-----------------------TGQELTELLEEEK 114
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
L C+ PVLI NK D AA EI + L+ + R +
Sbjct: 115 LSCV---------PVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQ 153
Query: 226 LFMCSVLMRQGYGDGFRWLANYID 249
+ CS L +G DG W+ ++
Sbjct: 154 IQSCSALTGEGVQDGMNWVCKNVN 177
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 77/204 (37%), Gaps = 66/204 (32%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
++L LGLDNAGKTTLL L + ++ PT R W
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 78
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
+ YF D +++++D++DR+RFEE T + +
Sbjct: 79 RSYFENTDILIYVIDSADRKRFEE-----------------------TGQELTELLEEEK 115
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
L C+ PVLI NK D AA EI + L+ + R +
Sbjct: 116 LSCV---------PVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQ 154
Query: 226 LFMCSVLMRQGYGDGFRWLANYID 249
+ CS L +G DG W+ ++
Sbjct: 155 IQSCSALTGEGVQDGMNWVCKNVN 178
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 22/108 (20%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
K ++L +GLD AGKTT+L+ +K + +PT+ R
Sbjct: 16 KDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIR 75
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
+W+ Y+ D ++F+VD++DRER ++++ EL ++ +E L +I+ +
Sbjct: 76 PLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILV 123
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 76/203 (37%), Gaps = 66/203 (32%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
++L LGLDNAGKTTLL L + ++ PT R W
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 65
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
+ YF D +++++D++DR+RFEE T + +
Sbjct: 66 RSYFENTDILIYVIDSADRKRFEE-----------------------TGQELTELLEEEK 102
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
L C+ PVLI NK D AA EI + L+ + R +
Sbjct: 103 LSCV---------PVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQ 141
Query: 226 LFMCSVLMRQGYGDGFRWLANYI 248
+ CS L +G DG W+ +
Sbjct: 142 IQSCSALTGEGVQDGMNWVCKNV 164
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 57/222 (25%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
+++ GLDN+GKTT+++ +K + + T +GY + G++ F D G
Sbjct: 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHIT--ATVGYNVETFEKGRVAFTVFDMGGAKKF 76
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R +W+ Y+ +DA++F+VD+SD R KSE+Q +L
Sbjct: 77 -------------------RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAML---- 113
Query: 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYF 202
+ E+ + EL P L NK+D GA + E+ +
Sbjct: 114 ---------------KHEDIRREL------PGGGRVPFLFFANKMDAAGAKTAAELVEIL 152
Query: 203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
L L M P +F + L G +GF WL
Sbjct: 153 DLTTL-----------MGDHPFVIFASNGLKGTGVHEGFSWL 183
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 24/137 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
++L LGLD AGKTT+L+ L+ + +PT +G+ L F D G+T++
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVVTTIPT----IGFNVETVTYKNLKFQVWDLGGQTSI 59
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R W+ Y+ DA++++VD+ DR+R SKSEL +L +E
Sbjct: 60 -------------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 100
Query: 143 LASSI-VFLVDTSDRER 158
L +I V + D E+
Sbjct: 101 LRKAILVVFANKQDMEQ 117
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 42/188 (22%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
++L LGLD AGKTT+L+ L+ + +PT I F V+T +
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVVTTIPT-----------------IGFNVETVTYKNL 46
Query: 128 EESKSEL----------QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177
+ +L +C ++ +++++VD+ DR+R SKSEL +L +E L
Sbjct: 47 KFQVWDLGGQTSIRPYWRCYYSN---TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 103
Query: 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237
+++ NK D A + E+ GL L R ++F S G
Sbjct: 104 AILVVFANKQDMEQAMTPSEMANALGLPAL------------KDRKWQIFKTSATKGTGL 151
Query: 238 GDGFRWLA 245
+ WL
Sbjct: 152 DEAMEWLV 159
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
K ++L +GLD AGKTT+L+ LK + +PT+ V + + V+ V D+
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 73
Query: 125 ER------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
R F+ ++ ++F+VD++DRER E++ EL +L ++ L
Sbjct: 74 IRPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDA 119
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGL 207
+L+ NK D A + EI GL+ L
Sbjct: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSL 148
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 28/143 (19%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSG 67
F G+ G K ++L +GLD AGKTT+L+ LK L + V T+ P +G+ +
Sbjct: 9 FKGLFG-----KKEMRILMVGLDAAGKTTILYKLK---LGEIVTTI-PTIGFNVETVEYK 59
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
+ F D G+ + R +W+ YF ++F+VD++DRER
Sbjct: 60 NISFTVWDVGGQDKI-------------------RPLWRHYFQNTQGLIFVVDSNDRERV 100
Query: 128 EESKSELQCLLTDESLASSIVFL 150
E++ EL +L ++ L +++ +
Sbjct: 101 NEAREELMRMLAEDELRDAVLLV 123
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
K ++L +GLD AGKTT+L+ LK + +PT+ V + + V+ V D+
Sbjct: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 72
Query: 125 ER------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
R F+ ++ ++F+VD++DRER E++ EL +L ++ L
Sbjct: 73 IRPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDA 118
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGL 207
+L+ NK D A + EI GL+ L
Sbjct: 119 VLLVFANKQDLPNAMNAAEITDKLGLHSL 147
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 28/143 (19%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSG 67
F G+ G K ++L +GLD AGKTT+L+ LK L + V T+ P +G+ +
Sbjct: 8 FKGLFG-----KKEMRILMVGLDAAGKTTILYKLK---LGEIVTTI-PTIGFNVETVEYK 58
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
+ F D G+ + R +W+ YF ++F+VD++DRER
Sbjct: 59 NISFTVWDVGGQDKI-------------------RPLWRHYFQNTQGLIFVVDSNDRERV 99
Query: 128 EESKSELQCLLTDESLASSIVFL 150
E++ EL +L ++ L +++ +
Sbjct: 100 NEAREELMRMLAEDELRDAVLLV 122
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
K ++L +GLD AGKTT+L+ LK + +PT+ R
Sbjct: 16 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIR 75
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
+WK YF ++F+VD++DRER +E ELQ +L + L +++ L
Sbjct: 76 PLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLL 123
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 22/109 (20%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPT 101
K ++L LGLD AGKTT+L+ LK + +PT L
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
R +W+ Y+ ++F+VD +DR+R +E++ EL ++ D + +I+ +
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 119
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLVDTSDRE 125
+L +GL +GKTT ++++ + + +PT+ R++ K + + L D +
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG-----NVTIKLWDIGGQP 78
Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
RF S E C S+IV++VD +D+E+ E SK+EL LL L PVL+LGN
Sbjct: 79 RFR-SMWERYC-----RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 186 KIDKHGAASEEEIRQYFGLYGL 207
K D GA E+E+ + L +
Sbjct: 133 KRDLPGALDEKELIEKMNLSAI 154
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
K ++L +GLD AGKTT+L+ LK + +PT+ + + + V+ D
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQ--YCNISFTVW--DVGG 70
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
++R C ++F+VD++DR R E++ +Q +L ++ L + L+
Sbjct: 71 QDRIRSLWRHYYCN------TEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVF 124
Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
NK D A S EI + GL+ + RP + +G +G W
Sbjct: 125 ANKQDLPEAMSAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEW 172
Query: 244 LAN 246
L+N
Sbjct: 173 LSN 175
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 28/121 (23%)
Query: 58 GYLGLW------TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL------------- 98
G +G W K ++L +GLD AGKT++L+ LK + +PT+
Sbjct: 3 GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 99 ---------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVF 149
R +W+ Y+ AI+F+VD++DR+R E++ EL +L ++ + ++I+
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 150 L 150
+
Sbjct: 123 V 123
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER- 126
++L +GLD AGKTT+L+ LK + +PT+ V + + V+ V D+ R
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDKIRP 59
Query: 127 -----FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
F+ ++ ++F+VD++DRER E++ EL +L ++ L +L
Sbjct: 60 LWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105
Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGL 207
+ NK D A + EI GL+ L
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSL 131
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 23/128 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
++L +GLD AGKTT+L+ LK L + V T+ P +G+ + + F D G+ +
Sbjct: 2 RILMVGLDAAGKTTILYKLK---LGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKI 57
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R +W+ YF ++F+VD++DRER E++ EL +L ++
Sbjct: 58 -------------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 98
Query: 143 LASSIVFL 150
L +++ +
Sbjct: 99 LRDAVLLV 106
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
K ++L LGLD AGKTT+L+ LK L Q V T+ P +G+ + F D G
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGG 66
Query: 79 KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
+ + R +W+ Y+ ++F+VD +DR+R +E++ EL ++
Sbjct: 67 QDKI-------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII 107
Query: 139 TDESLASSIVFL 150
D + +I+ +
Sbjct: 108 NDREMRDAIILI 119
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
K ++L LGLD AGKTT+L+ LK L Q V T+ P +G+ + F D G
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGG 65
Query: 79 KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
+ + R +W+ Y+ ++F+VD +DR+R +E++ EL ++
Sbjct: 66 QDKI-------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII 106
Query: 139 TDESLASSIVFL 150
D + +I+ +
Sbjct: 107 NDREMRDAIILI 118
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPTRRVW 105
++L LGLD AGKTT+L+ LK + +PT L R +W
Sbjct: 5 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLW 64
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
+ Y+ ++F+VD +DR+R +E++ EL ++ D + +I+ +
Sbjct: 65 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 109
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
K ++L +GLD AGKTT+L+ LK + +PT+ V + + V+ V D+
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 221
Query: 125 ER------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
R F+ ++ ++F+VD++DRER E++ EL +L ++ L
Sbjct: 222 IRPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDA 267
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGL 207
+L+ NK D A + EI GL+ L
Sbjct: 268 VLLVFANKQDLPNAMNAAEITDKLGLHSL 296
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 23/131 (17%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
K ++L +GLD AGKTT+L+ LK L + V T+ P +G+ + + F D G+
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLK---LGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT 139
+ R +W+ YF ++F+VD++DRER E++ EL +L
Sbjct: 220 DKI-------------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA 260
Query: 140 DESLASSIVFL 150
++ L +++ +
Sbjct: 261 EDELRDAVLLV 271
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRE 125
S ++L +GLD AGKTT+L+ LK + +PT+ V + + V+ V D+
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGLDKI 59
Query: 126 R------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
R F+ ++ ++F+VD++DRER E++ EL +L ++ L
Sbjct: 60 RPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDAV 105
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGL 207
+L+ NK D A + EI GL+ L
Sbjct: 106 LLVFANKQDLPNAMNAAEITDKLGLHSL 133
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 23/130 (17%)
Query: 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT 80
S ++L +GLD AGKTT+L+ LK L + V T+ P +G+ + + F D G
Sbjct: 2 SMRILMVGLDAAGKTTILYKLK---LGEIVTTI-PTIGFNVETVEYKNISFTVWDVGG-- 55
Query: 81 TLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD 140
L R +W+ YF ++F+VD++DRER E++ EL +L +
Sbjct: 56 -----------------LDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 98
Query: 141 ESLASSIVFL 150
+ L +++ +
Sbjct: 99 DELRDAVLLV 108
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPTRRVW 105
++L LGLD AGKTT+L+ LK + +PT L R +W
Sbjct: 4 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLW 63
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
+ Y+ ++F+VD +DR+R +E++ EL ++ D + +I+ +
Sbjct: 64 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 108
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 23/128 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
++L LGLD AGKTT+L+ LK L Q V T+ P +G+ + F D G+ +
Sbjct: 2 RILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 57
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R +W+ Y+ ++F+VD +DR+R +E++ EL ++ D
Sbjct: 58 -------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 98
Query: 143 LASSIVFL 150
+ +I+ +
Sbjct: 99 MRDAIILI 106
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 23/128 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
++L LGLD AGKTT+L+ LK L Q V T+ P +G+ + F D G+ +
Sbjct: 2 RILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 57
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R +W+ Y+ ++F+VD +DR+R +E++ EL ++ D
Sbjct: 58 -------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 98
Query: 143 LASSIVFL 150
+ +I+ +
Sbjct: 99 MRDAIILI 106
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 70/208 (33%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
K ++L +GLD AGKTT+L+ LK + +PT+ R
Sbjct: 19 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 78
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162
+W+ YF ++F+VD++DR+R E++ EL +L ++ L ++
Sbjct: 79 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV--------------- 123
Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGR 222
+L+ NK D A + EI GL+ L R
Sbjct: 124 -----------------LLVFANKQDLPNAMNAAEITDKLGLHSL--------------R 152
Query: 223 PIELFMCSVLMRQGYG--DGFRWLANYI 248
++ S G G +G WL+N I
Sbjct: 153 QRHWYIQSTCATSGEGLYEGLDWLSNNI 180
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
++L LGLD AGKTT+L+ LK L Q V T+ P +G+ + F D G+ +
Sbjct: 2 RILXLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 57
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R +W+ Y+ ++F+VD +DR+R +E++ EL ++ D
Sbjct: 58 -------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 98
Query: 143 LASSIVFL 150
+I+ +
Sbjct: 99 XRDAIILI 106
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 13/148 (8%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLVDTSDRE 125
+L +GL +GKTT ++++ + ++ +PT+ R+V K + + + D +
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKG-----NVTIKIWDIGGQP 78
Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
RF S E C ++IV+++D +DRE+ E S++EL LL L PVL+LGN
Sbjct: 79 RFR-SMWERYC-----RGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132
Query: 186 KIDKHGAASEEEIRQYFGLYGLTTGKVA 213
K D A E+++ + L + ++
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDREIC 160
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 38/189 (20%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
++ K++ +GLDNAGKTT+L+ + + PT+ V+ IV +
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----N 63
Query: 124 RERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
RF E +S T+ ++ +VD++DRER ++ EL +L E L
Sbjct: 64 NTRFLMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
+LI NK D + EI Q+ L + + + C L +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGE 168
Query: 236 GYGDGFRWL 244
G G W+
Sbjct: 169 GLCQGLEWM 177
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 23/125 (18%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
++ K++ +GLDNAGKTT+L+ + + PT+ + + + FL D G
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGG 74
Query: 79 KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
+ +L R W Y+ + ++ +VD++DRER ++ EL +L
Sbjct: 75 QESL-------------------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 115
Query: 139 TDESL 143
E L
Sbjct: 116 AHEDL 120
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ K++ +GLDNAGKTT+L+ + + PT+ V+ IV +
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----NN 59
Query: 125 ERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
RF E +S T+ ++ +VD++DRER ++ EL +L E L
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236
+LI NK D + EI Q+ L + + + C L +G
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEG 164
Query: 237 YGDGFRWL 244
G W+
Sbjct: 165 LCQGLEWM 172
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
+ K++ +GLDNAGKTT+L+ + + PT+ + + + FL D G+
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQ 70
Query: 80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT 139
+L R W Y+ + ++ +VD++DRER ++ EL +L
Sbjct: 71 ESL-------------------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111
Query: 140 DESL 143
E L
Sbjct: 112 HEDL 115
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ K++ +GLDNAGKTT+L+ + + PT+ V+ IV +
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----NN 59
Query: 125 ERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
RF E +S T+ ++ +VD++DRER ++ EL +L E L
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236
+LI NK D + EI Q+ L + + + C L +G
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEG 164
Query: 237 YGDGFRWL 244
G W+
Sbjct: 165 LCQGLEWM 172
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
+ K++ +GLDNAGKTT+L+ + + PT+ + + + FL D G+
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQ 70
Query: 80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT 139
+L R W Y+ + ++ +VD++DRER ++ EL +L
Sbjct: 71 ESL-------------------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111
Query: 140 DESL 143
E L
Sbjct: 112 HEDL 115
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K++ +GLDNAGKTT+L+ + + PT+ V+ IV + RF
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----NNTRF 68
Query: 128 --------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
E +S T+ ++ +VD++DRER ++ EL +L E L
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDLRKAG 125
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
+LI NK D + EI Q+ L + + + C L +G
Sbjct: 126 LLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEGLCQ 173
Query: 240 GFRWL 244
G W+
Sbjct: 174 GLEWM 178
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 23/121 (19%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
K++ +GLDNAGKTT+L+ + + PT+ + + + FL D G+ +L
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESL 79
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R W Y+ + ++ +VD++DRER ++ EL +L E
Sbjct: 80 -------------------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 120
Query: 143 L 143
L
Sbjct: 121 L 121
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 70/207 (33%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPT 101
K ++L +GLD AGKTT+L+ LK + +PT+
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
R +W+ Y+ + ++F++D++DR R E++ +Q +L ++ L +++
Sbjct: 75 RSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV-------------- 120
Query: 162 SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221
L+ NK D A S EI + GL+ +
Sbjct: 121 ------------------WLVFANKQDLPEAMSAAEITEKLGLHSIRN------------ 150
Query: 222 RPIELFMCSVLMRQGYG--DGFRWLAN 246
RP F+ S G G +G WL+N
Sbjct: 151 RP--WFIQSTCATSGEGLYEGLEWLSN 175
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 25/122 (20%)
Query: 30 DNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTTLLHMLKD 88
DNAGKTT+L + V T+ P LG+ + T + L + D G+ +L
Sbjct: 27 DNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGGQKSL------ 75
Query: 89 DRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIV 148
R W++YF + D ++++VD++DR+R ++ + ELQ LL +E LA + +
Sbjct: 76 -------------RSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL 122
Query: 149 FL 150
+
Sbjct: 123 LI 124
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 66/205 (32%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPT 101
K ++L +GLD AGKTT+L+ LK + +PT+
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
R +W+ Y+ + ++F+VD++DR R E++ +Q +L ++ L ++
Sbjct: 75 RSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA--------------- 119
Query: 162 SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221
L+ NK D A S EI + GL+ +
Sbjct: 120 -----------------AWLVFANKQDLPEAMSAAEITEKLGLHSI------------RN 150
Query: 222 RPIELFMCSVLMRQGYGDGFRWLAN 246
RP + +G +G WL+N
Sbjct: 151 RPWFIQATCATSGEGLYEGLEWLSN 175
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 66/201 (32%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
++L +GLD AGKTT+L+ LK + +PT+ R +W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
+ Y+ + ++F+VD++DR R E++ +Q +L ++ L ++
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA------------------- 102
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
L+ NK D A S EI + GL+ + RP
Sbjct: 103 -------------AWLVFANKQDLPEAMSAAEITEKLGLHSI------------RNRPWF 137
Query: 226 LFMCSVLMRQGYGDGFRWLAN 246
+ +G +G WL+N
Sbjct: 138 IQATCATSGEGLYEGLEWLSN 158
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 63/230 (27%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
+K +L LGLDN+GKTT+++ LK AQ L P +G+ KS L F D +G
Sbjct: 19 SKEVHVLCLGLDNSGKTTIINKLKPSN-AQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSG 76
Query: 79 KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
+ R +W+ Y+ AI+F++D+SDR R +K EL LL
Sbjct: 77 QGRY-------------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLL 117
Query: 139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEI 198
+ + P+L NK+D A + ++
Sbjct: 118 NHPDIKHRRI------------------------------PILFFANKMDLRDAVTSVKV 147
Query: 199 RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
Q L + +P + + +G +G WL + I
Sbjct: 148 SQLLCL------------ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPT 101
T+ ++L LGLD AGKTT+L+ L+ + +PT L
Sbjct: 5 TREXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS 132
R W+ Y+ DA++++VD+ DR+R SKS
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 27/162 (16%)
Query: 58 GYLGLWTKSGK-------------LLFLGLDNAGKTTLLHMLK--DDRLAQPVPTLHPTR 102
G++G W S K +L LGLDNAGKT++L+ L D P ++
Sbjct: 1 GHMGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLET 60
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162
+K+ I F + D + +C +D +++++VD++DR+R +
Sbjct: 61 LQYKN-------ISF--EVWDLGGQTGVRPYWRCYFSD---TDAVIYVVDSTDRDRMGVA 108
Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
K EL LL ++ L +LI NK D AASE EI + G+
Sbjct: 109 KHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGV 150
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
T SG + +G N GK+TLL+ L ++A P TR+ + + VDT
Sbjct: 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 64
Query: 124 RERFEESKSELQCLLTDESLA--SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
+ ++ E E+LA +++V++VD E+ EL + P+L
Sbjct: 65 LHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED---ELVARALKPLVGKVPIL 121
Query: 182 ILGNKIDKHGAASEEEIRQYFGL 204
++GNK+D EE ++ Y L
Sbjct: 122 LVGNKLDA-AKYPEEAMKAYHEL 143
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR-RVWK-DYFPAVDAIVFLVDTS 122
K G + +G N GK+TLL+ L +++ P TR RV P I+FL DT
Sbjct: 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL-DTP 67
Query: 123 DRERFEESKSEL----QCLLTDESL--ASSIVFLVDTSD--RERFEESKSELQCLLTDES 174
+E KS++ + +SL A I+F++D ++ R R EE L
Sbjct: 68 G--IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---- 121
Query: 175 LASCPVLILGNKIDKHGAAS 194
+ PV+++ NKIDK G A
Sbjct: 122 --NKPVIVVINKIDKIGPAK 139
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILG-----YLGLWTKSGKLLFLGL 74
K G + +G N GK+TLL+ L L V + P G LG+ + + L
Sbjct: 9 KVGYVAIVGKPNVGKSTLLNNL----LGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL 64
Query: 75 DNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD--RERFEE 129
D G + K D L H + K D I+F++D ++ R R EE
Sbjct: 65 DTPG---IYEPKKSDVLG------HSMVEIAKQSLEEADVILFMIDATEGWRPRDEE 112
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR-RVWK-DYFPAVDAIVFLVDTS 122
K G + +G N GK+TLL+ L +++ P TR RV P I+FL DT
Sbjct: 8 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL-DTP 66
Query: 123 DRERFEESKSEL----QCLLTDESL--ASSIVFLVDTSD--RERFEESKSELQCLLTDES 174
+E KS++ + +SL A I+F++D ++ R R EE L
Sbjct: 67 G--IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---- 120
Query: 175 LASCPVLILGNKIDKHGAAS 194
+ PV+++ NKIDK G A
Sbjct: 121 --NKPVIVVINKIDKIGPAK 138
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILG-----YLGLWTKSGKLLFLGL 74
K G + +G N GK+TLL+ L L V + P G LG+ + + L
Sbjct: 8 KVGYVAIVGKPNVGKSTLLNNL----LGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFL 63
Query: 75 DNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD--RERFEE 129
D G + K D L H + K D I+F++D ++ R R EE
Sbjct: 64 DTPG---IYEPKKSDVLG------HSMVEIAKQSLEEADVILFMIDATEGWRPRDEE 111
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV--DTSDRE 125
K++ LG GKT+L+H +D+ +Q + K+ D + + DT+ +E
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS---ELQCLLTDESLASCPVLI 182
RF+ A V + D ++ FE KS E S + P +I
Sbjct: 70 RFQSLGVAFY------RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 183 LGNKID 188
LGNKID
Sbjct: 124 LGNKID 129
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT-----LHPTRRVWKDYFP------AVDAIV 116
KLL LG GKTT L+ D++ T R V+ P A +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 117 FLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
L DT+ +ERF +S D A + + D + ++ F ++ + L +
Sbjct: 87 QLWDTAGQERF---RSLTTAFFRD---AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 177 SCPVLILGNKID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234
+ ++++GNK D +E + R+ YG+ + + + + +E + ++ R
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
G++ F+G N GK++LL+ L + ++A T TR + F V++ + VD
Sbjct: 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI---NFYLVNSKYYFVDLPGYGY 80
Query: 127 FEESKSE--LQCLLTDESLASS-----IVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
+ SK E L L ++ + + LVD R S+L + +SL + P
Sbjct: 81 AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDG----RIPPQDSDLMMVEWMKSL-NIP 135
Query: 180 VLILGNKIDK----HGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE--LFMCSVLM 233
I+ K+DK A EE R+ F YG T P S ++G I L + S L+
Sbjct: 136 FTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT---IIPTSSVTGEGISELLDLISTLL 192
Query: 234 RQG 236
++
Sbjct: 193 KEN 195
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAV------DAIVFLVDT 121
+++ LG GKT+L + + LH ++ +D + D + +VDT
Sbjct: 6 RVVLLGDPGVGKTSLASLFA----GKQERDLHE--QLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPV 180
+ E+ ++S S+ CL S+ V + +DR F ES SEL+ L A P+
Sbjct: 60 WEAEKLDKSWSQESCLQG----GSAYVIVYSIADRGSF-ESASELRIQLRRTHQADHVPI 114
Query: 181 LILGNKID 188
+++GNK D
Sbjct: 115 ILVGNKAD 122
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 68 KLLFLGLDNAGKTTLLHMLK----DDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
KL+FLG GKT+++ D+ + ++ ++ D P + L DT+
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVR---LQLWDTAG 59
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
+ERF +S + + D + A + + D ++R+ FE + +Q +L +E + ++
Sbjct: 60 QERF---RSLIPSYIRDSAAA---IVVYDITNRQSFENTTKWIQDIL-NERGKDVIIALV 112
Query: 184 GNKID 188
GNK D
Sbjct: 113 GNKTD 117
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 147 IVFL-VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID--------KHGAASEEE 197
+V+L VDT + E E ++ EL +E+L++C L++ +D K G+ E
Sbjct: 475 VVYLEVDTKEGEEKETAQFELD----EEALSTC-CLVMEESLDNVYKRCRFKDGSIGPLE 529
Query: 198 IR-----------QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234
IR +F G +TG+ TPR SG+ +++ V+ +
Sbjct: 530 IRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAK 577
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHML-KDDRLAQPVPTLHPTRRVWKDYF---PAVDAIVFLV 119
T ++ F G NAGK+T +++L RLA T P R +YF PA + + LV
Sbjct: 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKT--PGRTQHINYFSVGPAAEPVAHLV 84
Query: 120 D 120
D
Sbjct: 85 D 85
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 25/108 (23%)
Query: 147 IVFL-VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID--------KHGAASEEE 197
+V+L VDT + E E ++ EL +E+L++C L+ +D K G+ E
Sbjct: 475 VVYLEVDTKEGEEKETAQFELD----EEALSTC-CLVXEESLDNVYKRCRFKDGSIGPLE 529
Query: 198 IR-----------QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234
IR +F G +TG+ TPR SG+ +++ V+ +
Sbjct: 530 IRVVRQGTFDSLXDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAK 577
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLH-MLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVF-L 118
L + +++ +G N GK+TLL+ +L +DR + +P TR V + + I+F +
Sbjct: 239 LLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG--TTRDVISEEI-VIRGILFRI 295
Query: 119 VDTSDRERFEESKSE---LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
VDT+ E ++ L + A ++F++D S E+ K +L E +
Sbjct: 296 VDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-----IL--ERI 348
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFG 203
+ L++ NK+D +EEEI+ G
Sbjct: 349 KNKRYLVVINKVDVVEKINEEEIKNKLG 376
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLK----DDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVD 120
K KLL LG +GK+T++ +K D + V P V+ + ++ AIV +D
Sbjct: 11 KDVKLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPV--VYSNTIQSLAAIVRAMD 68
Query: 121 T-----SDRERFEESK 131
T D+ER +SK
Sbjct: 69 TLGVEYGDKERKTDSK 84
>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae
Length = 574
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G +L +G DN AG + + +P
Sbjct: 285 MFEFWDW---VGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPV- 340
Query: 54 HPILGYLGLW 63
IL +G+W
Sbjct: 341 --ILALIGIW 348
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKD-YFPAVDAIVFLVDTSDRER 126
KL+FLG + GKT+L+ D + K Y + L DT+ +ER
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F +S + + D ++A V + D ++ F ++ + + T E + ++++GNK
Sbjct: 76 F---RSLIPSYIRDSTVA---VVVYDITNTNSFHQTSKWIDDVRT-ERGSDVIIMLVGNK 128
Query: 187 I---DKHGAASEEEIRQ 200
DK ++EE R+
Sbjct: 129 TDLSDKRQVSTEEGERK 145
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With
Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With
Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Complexed With D-xylose
Length = 347
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With
Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With
Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With
Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With
Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----HPTRRVWKDYFPA--VDAIVFLV-- 119
KLL LG GKTT L+ D++ T +RV D A F V
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 120 ---DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
DT+ ERF +S D A + + D + ++ F ++ + L +
Sbjct: 73 QLWDTAGLERF---RSLTTAFFRD---AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 177 SCPVLILGNKID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234
+ ++++GNK D +E + R+ YG+ + + + + +E + ++ R
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With
Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With
Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With
Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With
Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From
Lactococcus Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL--GLWTK 65
FT + + W K GK L LG D+A + ++ KD A P T+ P G + GL
Sbjct: 27 FTNLGARIVDWQKDGKHLILGFDSAKE----YLEKD---AYPGATVGPTAGRIKDGLVKI 79
Query: 66 SGKLLFLGLDNAGKTTL 82
SGK L N G TL
Sbjct: 80 SGKDYILN-QNEGPQTL 95
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----HPTRRVWKDYFPA--VDAIVFLV-- 119
KLL LG GKTT L+ D++ T +RV D A F V
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 120 ---DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
DT+ ERF +S D A + + D + ++ F ++ + L +
Sbjct: 73 QLWDTAGLERF---RSLTTAFFRD---AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 177 SCPVLILGNKID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234
+ ++++GNK D +E + R+ YG+ + + + + +E + ++ R
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 66
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 67 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 83
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 84 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 129
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 75
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 76 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 121
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLD 75
G+ ++ + L +G+ N GK+TL++ L +A+ P + W K GK L L LD
Sbjct: 115 GVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD--RPGITTSQQWVKVGKELEL-LD 171
Query: 76 NAG 78
G
Sbjct: 172 TPG 174
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 49
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 50 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 95
>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
Length = 557
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 262 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 318
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 319 ---LAMLGIW 325
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 58
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 59 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 104
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 56
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 57 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 102
>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
Length = 557
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 262 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 318
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 319 ---LAMLGIW 325
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD + Y+ K+ + LD GKT
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 56
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 57 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 102
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 262 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 318
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 319 ---LALLGIW 325
>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
Length = 558
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 263 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 319
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 320 ---LAMLGIW 326
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 263 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 319
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 320 ---LALLGIW 326
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 262 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 318
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 319 ---LALLGIW 325
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSG--KLLFLGLDN-----AGKTTLLHMLKDDRLAQPVPTL 53
MF+ WDW V G LW+ G L +G DN +G + + L + P L
Sbjct: 263 MFEFWDW---VGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVL 319
Query: 54 HPILGYLGLW 63
L LG+W
Sbjct: 320 ---LALLGIW 326
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK LL DD + Y+ K+ + LD GKT
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTES---------YISTIGVDFKIRTIELD--GKTIK 66
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +D+E F K LQ
Sbjct: 67 LQIW--DTAGQ-----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 71 FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSD--RERF 127
+G N+GKT+L + L L Q V T T K Y P + + LVDT R
Sbjct: 184 IVGYTNSGKTSLFNSLTG--LTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRER--FEESKSELQCLLTDESLASCPVLILGN 185
+ L++ + +++ ++D++ E E +S + +L + ++ P+L+ N
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLN 300
Query: 186 KIDK 189
KIDK
Sbjct: 301 KIDK 304
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKD-YFPAVDAIVFLVDTSDRER 126
KL+FLG + GKT+L+ D + K Y + L DT+ +ER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F +S + + D ++A V + D ++ F+++ + + T+ + ++++GNK
Sbjct: 64 F---RSLIPSYIRDSTVA---VVVYDITNLNSFQQTSKWIDDVRTERG-SDVIIMLVGNK 116
Query: 187 ID 188
D
Sbjct: 117 TD 118
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL +G GK+ LL DD Y+ K+ + L+N KT
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDS---------YISTIGVDFKIRTISLEN--KTVK 59
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQ 135
L + D Q R + Y+ I+ + D +DR+ F+ K +Q
Sbjct: 60 LQIW--DTAGQE-----RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQ 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,796,086
Number of Sequences: 62578
Number of extensions: 324255
Number of successful extensions: 1444
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 239
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)