Query psy871
Match_columns 249
No_of_seqs 150 out of 1784
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 17:17:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00178 SAR Sar1p-like memb 100.0 4.5E-30 9.8E-35 191.6 18.4 184 5-248 1-184 (184)
2 KOG0092|consensus 100.0 1.4E-30 3E-35 185.2 14.2 161 19-248 3-166 (200)
3 cd04149 Arf6 Arf6 subfamily. 100.0 5E-30 1.1E-34 188.6 17.5 162 18-246 6-167 (168)
4 PLN00223 ADP-ribosylation fact 100.0 1.5E-29 3.3E-34 188.1 17.7 164 18-248 14-177 (181)
5 cd00879 Sar1 Sar1 subfamily. 100.0 6.5E-29 1.4E-33 186.7 20.0 188 5-248 3-190 (190)
6 PTZ00133 ADP-ribosylation fact 100.0 5.2E-29 1.1E-33 185.5 19.2 164 18-248 14-177 (182)
7 KOG0084|consensus 100.0 1E-29 2.2E-34 181.5 14.4 160 20-248 8-171 (205)
8 smart00177 ARF ARF-like small 100.0 4E-29 8.6E-34 185.1 18.0 164 18-248 10-173 (175)
9 PF00025 Arf: ADP-ribosylation 100.0 3.2E-29 7E-34 185.3 16.7 175 8-248 1-175 (175)
10 KOG0094|consensus 100.0 2.1E-29 4.5E-34 179.3 14.5 168 13-248 14-184 (221)
11 cd04150 Arf1_5_like Arf1-Arf5- 100.0 9.8E-29 2.1E-33 180.3 18.1 158 22-246 1-158 (159)
12 cd04154 Arl2 Arl2 subfamily. 100.0 2E-28 4.4E-33 181.2 17.8 166 14-246 7-172 (173)
13 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4E-28 8.7E-33 179.7 17.7 162 19-247 13-174 (174)
14 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.5E-28 7.5E-33 179.5 16.9 159 21-248 2-163 (172)
15 cd04158 ARD1 ARD1 subfamily. 100.0 4.4E-28 9.6E-33 178.7 17.4 160 23-248 1-160 (169)
16 cd04121 Rab40 Rab40 subfamily. 100.0 5.1E-28 1.1E-32 180.4 17.6 159 20-248 5-166 (189)
17 cd04175 Rap1 Rap1 subgroup. T 100.0 3.4E-28 7.4E-33 178.5 16.5 159 21-248 1-162 (164)
18 PTZ00369 Ras-like protein; Pro 100.0 6.4E-28 1.4E-32 180.9 17.0 162 18-248 2-166 (189)
19 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8E-28 1.7E-32 176.1 17.1 160 21-249 1-162 (162)
20 cd04136 Rap_like Rap-like subf 100.0 7.1E-28 1.5E-32 176.6 16.7 159 21-248 1-162 (163)
21 cd01875 RhoG RhoG subfamily. 100.0 7.5E-28 1.6E-32 180.7 16.7 160 19-248 1-176 (191)
22 cd04120 Rab12 Rab12 subfamily. 100.0 1.3E-27 2.8E-32 179.9 17.4 158 23-248 2-162 (202)
23 cd04133 Rop_like Rop subfamily 100.0 1.2E-27 2.6E-32 176.6 16.3 156 22-248 2-172 (176)
24 cd04127 Rab27A Rab27a subfamil 100.0 1.9E-27 4.1E-32 177.2 17.6 171 20-248 3-176 (180)
25 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-27 3.4E-32 177.0 16.6 158 19-246 3-177 (182)
26 cd04151 Arl1 Arl1 subfamily. 100.0 3E-27 6.5E-32 172.4 17.9 157 23-246 1-157 (158)
27 cd04122 Rab14 Rab14 subfamily. 100.0 3.1E-27 6.7E-32 173.7 17.6 158 22-248 3-163 (166)
28 KOG0078|consensus 100.0 1.2E-27 2.6E-32 173.4 14.9 161 19-248 10-173 (207)
29 cd04176 Rap2 Rap2 subgroup. T 100.0 2.3E-27 4.9E-32 174.0 16.7 160 21-249 1-163 (163)
30 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.9E-27 6.2E-32 173.5 17.1 160 21-249 2-164 (164)
31 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.4E-27 7.3E-32 178.7 17.8 160 22-248 1-167 (201)
32 smart00173 RAS Ras subfamily o 100.0 2.8E-27 6.1E-32 173.6 16.8 158 22-248 1-161 (164)
33 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7E-27 1.5E-31 174.3 18.7 168 20-248 2-169 (183)
34 cd00877 Ran Ran (Ras-related n 100.0 3E-27 6.4E-32 173.7 16.2 157 22-248 1-158 (166)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 5.3E-27 1.2E-31 172.7 17.6 159 22-248 1-166 (168)
36 cd04156 ARLTS1 ARLTS1 subfamil 100.0 5.6E-27 1.2E-31 171.3 17.3 159 23-246 1-159 (160)
37 cd04157 Arl6 Arl6 subfamily. 100.0 6.1E-27 1.3E-31 171.4 17.3 158 23-247 1-162 (162)
38 PLN03071 GTP-binding nuclear p 100.0 3.6E-27 7.7E-32 180.4 16.2 159 19-248 11-171 (219)
39 cd04144 Ras2 Ras2 subfamily. 100.0 4.8E-27 1E-31 176.3 16.3 157 23-248 1-162 (190)
40 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6.9E-27 1.5E-31 178.8 17.4 157 20-247 12-186 (232)
41 cd01867 Rab8_Rab10_Rab13_like 100.0 1E-26 2.2E-31 171.2 17.7 159 21-248 3-164 (167)
42 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-26 2.5E-31 170.6 17.6 158 22-248 2-162 (165)
43 cd04126 Rab20 Rab20 subfamily. 100.0 9.1E-27 2E-31 177.2 17.5 168 22-248 1-189 (220)
44 cd01871 Rac1_like Rac1-like su 100.0 1.1E-26 2.3E-31 171.9 16.9 158 21-248 1-174 (174)
45 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.7E-26 3.8E-31 168.4 17.8 158 23-247 1-158 (158)
46 cd04140 ARHI_like ARHI subfami 100.0 1.1E-26 2.3E-31 170.7 16.8 157 22-247 2-163 (165)
47 KOG0077|consensus 100.0 2.2E-27 4.9E-32 164.4 12.1 192 3-249 2-193 (193)
48 cd04131 Rnd Rnd subfamily. Th 100.0 8.5E-27 1.8E-31 172.7 16.0 155 22-246 2-173 (178)
49 cd04117 Rab15 Rab15 subfamily. 100.0 1.9E-26 4.1E-31 168.6 17.6 157 22-247 1-160 (161)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.7E-26 3.8E-31 169.8 17.5 159 21-248 2-163 (166)
51 cd04161 Arl2l1_Arl13_like Arl2 100.0 2E-26 4.4E-31 169.4 17.8 160 23-246 1-166 (167)
52 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.6E-26 3.5E-31 170.3 17.1 158 23-248 2-164 (170)
53 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.6E-26 3.5E-31 170.1 16.9 119 113-247 49-167 (167)
54 cd04111 Rab39 Rab39 subfamily. 99.9 2.1E-26 4.6E-31 175.2 17.8 161 21-248 2-165 (211)
55 cd04155 Arl3 Arl3 subfamily. 99.9 3E-26 6.4E-31 169.7 17.9 169 12-247 5-173 (173)
56 cd01864 Rab19 Rab19 subfamily. 99.9 3.2E-26 6.9E-31 168.2 17.6 161 20-248 2-165 (165)
57 cd04109 Rab28 Rab28 subfamily. 99.9 2.9E-26 6.3E-31 175.3 18.0 159 22-248 1-165 (215)
58 KOG0080|consensus 99.9 5.1E-27 1.1E-31 161.7 12.2 161 20-248 10-173 (209)
59 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.2E-26 4.7E-31 170.4 16.3 156 22-247 2-173 (175)
60 cd04112 Rab26 Rab26 subfamily. 99.9 4.1E-26 8.9E-31 171.4 17.7 158 22-248 1-162 (191)
61 cd01868 Rab11_like Rab11-like. 99.9 4.4E-26 9.5E-31 167.5 17.5 158 22-248 4-164 (165)
62 KOG0394|consensus 99.9 3.7E-27 8.1E-32 166.2 11.1 160 21-247 9-176 (210)
63 cd04110 Rab35 Rab35 subfamily. 99.9 4.3E-26 9.2E-31 172.3 17.5 159 20-248 5-166 (199)
64 KOG0075|consensus 99.9 6.9E-27 1.5E-31 158.6 11.5 179 1-247 1-180 (186)
65 cd01866 Rab2 Rab2 subfamily. 99.9 6.5E-26 1.4E-30 167.0 17.8 158 22-248 5-165 (168)
66 cd04134 Rho3 Rho3 subfamily. 99.9 3.3E-26 7.2E-31 171.6 16.4 157 22-248 1-173 (189)
67 KOG0098|consensus 99.9 1.8E-26 4E-31 163.0 13.9 158 21-247 6-166 (216)
68 cd04106 Rab23_lke Rab23-like s 99.9 4.6E-26 1E-30 166.8 16.6 156 22-247 1-161 (162)
69 cd01863 Rab18 Rab18 subfamily. 99.9 9.6E-26 2.1E-30 165.0 18.1 159 22-248 1-161 (161)
70 cd01860 Rab5_related Rab5-rela 99.9 8.6E-26 1.9E-30 165.5 17.8 159 21-248 1-162 (163)
71 KOG0073|consensus 99.9 5.2E-26 1.1E-30 157.3 15.2 171 12-248 7-177 (185)
72 cd04124 RabL2 RabL2 subfamily. 99.9 4.7E-26 1E-30 166.6 16.1 156 22-248 1-157 (161)
73 cd04115 Rab33B_Rab33A Rab33B/R 99.9 6.7E-26 1.5E-30 167.2 17.0 161 20-248 1-168 (170)
74 cd04113 Rab4 Rab4 subfamily. 99.9 8.7E-26 1.9E-30 165.2 17.3 158 22-248 1-161 (161)
75 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.9E-26 1.3E-30 168.9 16.5 157 22-248 1-165 (182)
76 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 8.1E-26 1.7E-30 172.1 17.5 156 22-246 2-173 (222)
77 KOG0079|consensus 99.9 1.7E-26 3.6E-31 157.0 11.8 155 23-247 10-167 (198)
78 cd04116 Rab9 Rab9 subfamily. 99.9 1.2E-25 2.6E-30 165.9 17.6 162 20-248 4-170 (170)
79 cd01861 Rab6 Rab6 subfamily. 99.9 1.3E-25 2.9E-30 164.2 17.5 158 22-248 1-161 (161)
80 KOG0070|consensus 99.9 1.9E-26 4.1E-31 163.8 12.5 167 15-248 11-177 (181)
81 cd04103 Centaurin_gamma Centau 99.9 9.1E-26 2E-30 164.1 16.4 153 22-248 1-158 (158)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 1E-25 2.2E-30 166.0 16.8 160 21-248 1-163 (168)
83 cd04139 RalA_RalB RalA/RalB su 99.9 1.4E-25 3.1E-30 164.4 17.4 158 22-248 1-161 (164)
84 cd04125 RabA_like RabA-like su 99.9 1.8E-25 3.8E-30 167.7 17.6 158 22-248 1-161 (188)
85 PLN03118 Rab family protein; P 99.9 1.9E-25 4.1E-30 170.4 17.8 162 19-248 12-176 (211)
86 cd04142 RRP22 RRP22 subfamily. 99.9 2.1E-25 4.5E-30 167.9 17.6 165 22-247 1-172 (198)
87 smart00176 RAN Ran (Ras-relate 99.9 9.2E-26 2E-30 169.6 15.5 151 27-248 1-153 (200)
88 smart00175 RAB Rab subfamily o 99.9 2.3E-25 4.9E-30 163.4 17.3 158 22-248 1-161 (164)
89 cd04132 Rho4_like Rho4-like su 99.9 1.7E-25 3.6E-30 167.7 16.7 157 22-248 1-166 (187)
90 PF00071 Ras: Ras family; Int 99.9 2E-25 4.3E-30 163.4 16.5 157 23-248 1-160 (162)
91 cd04143 Rhes_like Rhes_like su 99.9 2.6E-25 5.6E-30 172.4 17.7 159 22-248 1-170 (247)
92 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.5E-25 7.6E-30 162.3 16.9 155 24-246 2-163 (164)
93 cd04118 Rab24 Rab24 subfamily. 99.9 3.5E-25 7.6E-30 166.8 17.2 157 22-248 1-165 (193)
94 cd04101 RabL4 RabL4 (Rab-like4 99.9 5.9E-25 1.3E-29 161.3 17.8 158 22-248 1-163 (164)
95 PLN03108 Rab family protein; P 99.9 4.7E-25 1E-29 167.8 17.8 159 21-248 6-167 (210)
96 cd04135 Tc10 TC10 subfamily. 99.9 2.9E-25 6.3E-30 164.5 16.2 158 22-248 1-173 (174)
97 PLN03110 Rab GTPase; Provision 99.9 4.3E-25 9.3E-30 168.7 17.2 160 20-248 11-173 (216)
98 smart00174 RHO Rho (Ras homolo 99.9 2.4E-25 5.2E-30 164.9 15.4 155 24-248 1-171 (174)
99 cd01862 Rab7 Rab7 subfamily. 99.9 7.1E-25 1.5E-29 162.1 17.7 159 22-247 1-165 (172)
100 cd04159 Arl10_like Arl10-like 99.9 8.6E-25 1.9E-29 159.2 17.9 156 24-246 2-158 (159)
101 cd04123 Rab21 Rab21 subfamily. 99.9 7.5E-25 1.6E-29 160.2 17.6 158 22-248 1-161 (162)
102 cd04137 RheB Rheb (Ras Homolog 99.9 4.7E-25 1E-29 164.3 16.8 158 22-248 2-162 (180)
103 KOG0087|consensus 99.9 1.4E-25 2.9E-30 162.1 12.8 159 21-248 14-175 (222)
104 cd04146 RERG_RasL11_like RERG/ 99.9 4.1E-25 8.8E-30 162.3 15.2 157 23-248 1-163 (165)
105 cd01873 RhoBTB RhoBTB subfamil 99.9 6.5E-25 1.4E-29 164.6 16.6 111 110-247 62-194 (195)
106 cd04148 RGK RGK subfamily. Th 99.9 1E-24 2.2E-29 167.1 17.1 157 22-248 1-162 (221)
107 cd01893 Miro1 Miro1 subfamily. 99.9 1.7E-24 3.7E-29 159.1 17.2 158 22-247 1-162 (166)
108 KOG0091|consensus 99.9 1.7E-24 3.7E-29 149.7 15.3 165 17-248 4-172 (213)
109 COG1160 Predicted GTPases [Gen 99.9 1.4E-24 3.1E-29 174.9 17.2 165 66-247 178-349 (444)
110 cd01892 Miro2 Miro2 subfamily. 99.9 8.7E-25 1.9E-29 161.0 14.7 160 19-248 2-165 (169)
111 cd00154 Rab Rab family. Rab G 99.9 3.5E-24 7.6E-29 155.9 17.0 156 22-246 1-159 (159)
112 KOG0093|consensus 99.9 6.7E-25 1.5E-29 149.0 12.1 156 23-248 23-182 (193)
113 cd00876 Ras Ras family. The R 99.9 2.8E-24 6.1E-29 156.9 16.5 157 23-248 1-160 (160)
114 cd00157 Rho Rho (Ras homology) 99.9 2.4E-24 5.1E-29 159.1 15.5 156 22-246 1-170 (171)
115 cd04147 Ras_dva Ras-dva subfam 99.9 4.2E-24 9.2E-29 161.3 16.9 158 23-248 1-162 (198)
116 cd01870 RhoA_like RhoA-like su 99.9 4.9E-24 1.1E-28 158.1 16.8 157 22-248 2-174 (175)
117 cd04130 Wrch_1 Wrch-1 subfamil 99.9 4E-24 8.7E-29 158.2 16.3 155 22-246 1-171 (173)
118 KOG0071|consensus 99.9 3.3E-24 7.2E-29 144.5 13.5 165 17-248 13-177 (180)
119 PRK03003 GTP-binding protein D 99.9 2.2E-23 4.8E-28 176.3 20.1 165 67-248 212-381 (472)
120 cd04114 Rab30 Rab30 subfamily. 99.9 1.9E-23 4.2E-28 154.0 17.4 160 20-248 6-168 (169)
121 KOG0081|consensus 99.9 4.5E-25 9.7E-30 151.9 7.5 166 23-247 11-179 (219)
122 TIGR03594 GTPase_EngA ribosome 99.9 1.6E-23 3.5E-28 176.2 18.5 164 67-247 173-342 (429)
123 KOG0395|consensus 99.9 6.5E-24 1.4E-28 158.3 14.2 160 20-248 2-164 (196)
124 KOG0086|consensus 99.9 1.2E-23 2.7E-28 143.9 13.6 157 22-247 10-169 (214)
125 cd04129 Rho2 Rho2 subfamily. 99.9 2.1E-23 4.5E-28 156.2 16.3 156 22-247 2-171 (187)
126 cd01897 NOG NOG1 is a nucleola 99.9 1.9E-23 4.1E-28 153.9 15.1 162 22-248 1-167 (168)
127 PRK12299 obgE GTPase CgtA; Rev 99.9 1.1E-23 2.5E-28 169.3 15.0 162 22-248 159-327 (335)
128 cd01898 Obg Obg subfamily. Th 99.9 3.2E-23 6.9E-28 152.9 15.4 119 114-248 48-170 (170)
129 PTZ00132 GTP-binding nuclear p 99.9 8E-23 1.7E-27 156.4 17.0 160 19-248 7-167 (215)
130 cd01890 LepA LepA subfamily. 99.9 4.4E-23 9.6E-28 153.5 15.2 113 111-248 64-176 (179)
131 PRK15494 era GTPase Era; Provi 99.9 7.8E-23 1.7E-27 165.6 16.5 164 19-248 50-215 (339)
132 TIGR00436 era GTP-binding prot 99.9 8.9E-23 1.9E-27 161.0 15.8 160 23-248 2-163 (270)
133 KOG0088|consensus 99.9 1E-23 2.3E-28 145.1 8.9 159 21-247 13-173 (218)
134 KOG0076|consensus 99.9 5.4E-24 1.2E-28 148.8 7.3 171 4-248 8-186 (197)
135 TIGR02729 Obg_CgtA Obg family 99.9 9.6E-23 2.1E-27 163.8 15.4 164 22-249 158-329 (329)
136 KOG0074|consensus 99.9 3.1E-23 6.7E-28 140.1 10.2 175 8-248 3-178 (185)
137 COG1159 Era GTPase [General fu 99.9 1.6E-22 3.6E-27 154.8 15.4 166 18-248 3-171 (298)
138 KOG0095|consensus 99.9 4.9E-23 1.1E-27 140.4 10.7 158 22-248 8-168 (213)
139 PF02421 FeoB_N: Ferrous iron 99.9 3.1E-23 6.8E-28 147.7 10.1 153 22-244 1-156 (156)
140 cd01878 HflX HflX subfamily. 99.9 2.1E-22 4.6E-27 152.9 15.1 159 21-248 41-204 (204)
141 PRK12296 obgE GTPase CgtA; Rev 99.9 1.7E-22 3.6E-27 168.4 14.6 161 22-248 160-339 (500)
142 TIGR03156 GTP_HflX GTP-binding 99.9 3.2E-22 7E-27 162.2 15.8 158 21-248 189-351 (351)
143 PRK00093 GTP-binding protein D 99.9 8.2E-22 1.8E-26 166.0 18.9 164 67-247 174-342 (435)
144 KOG0072|consensus 99.9 4.8E-23 1E-27 139.6 8.3 168 14-248 11-178 (182)
145 KOG0083|consensus 99.9 4.7E-24 1E-28 142.6 3.4 154 26-248 2-159 (192)
146 PRK12297 obgE GTPase CgtA; Rev 99.9 6.1E-22 1.3E-26 163.1 15.9 159 23-248 160-326 (424)
147 TIGR02528 EutP ethanolamine ut 99.9 6E-22 1.3E-26 141.8 13.2 103 117-245 38-141 (142)
148 cd04171 SelB SelB subfamily. 99.9 1.1E-21 2.3E-26 143.8 14.8 107 113-246 50-163 (164)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.6E-21 7.7E-26 141.7 15.8 162 22-247 1-164 (168)
150 PRK09518 bifunctional cytidyla 99.9 4.1E-21 8.8E-26 169.6 19.0 165 67-248 451-620 (712)
151 PRK00089 era GTPase Era; Revie 99.9 3.2E-21 7E-26 154.2 15.9 166 19-248 3-170 (292)
152 cd01895 EngA2 EngA2 subfamily. 99.9 4.4E-21 9.5E-26 141.8 15.3 166 20-247 1-173 (174)
153 PRK12298 obgE GTPase CgtA; Rev 99.9 3.1E-21 6.8E-26 158.1 15.3 164 23-248 161-332 (390)
154 cd00881 GTP_translation_factor 99.9 6.5E-21 1.4E-25 142.9 15.6 182 23-248 1-186 (189)
155 PRK11058 GTPase HflX; Provisio 99.9 6.7E-21 1.4E-25 157.9 16.6 158 22-248 198-361 (426)
156 cd01881 Obg_like The Obg-like 99.9 1.9E-21 4.1E-26 144.2 12.1 121 113-248 43-176 (176)
157 PF00009 GTP_EFTU: Elongation 99.9 9.8E-22 2.1E-26 147.2 10.4 119 111-248 67-186 (188)
158 cd04163 Era Era subfamily. Er 99.9 8.8E-21 1.9E-25 139.1 15.4 165 20-248 2-168 (168)
159 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9E-21 1.9E-25 137.8 14.6 153 22-248 2-156 (157)
160 PRK04213 GTP-binding protein; 99.9 1.1E-20 2.4E-25 143.2 15.5 167 19-248 7-191 (201)
161 cd01894 EngA1 EngA1 subfamily. 99.9 5.3E-21 1.1E-25 139.1 13.1 112 113-248 44-157 (157)
162 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.3E-20 2.9E-25 141.5 15.3 124 22-191 1-143 (202)
163 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-20 3.7E-25 141.2 15.8 107 111-238 62-171 (194)
164 PRK05291 trmE tRNA modificatio 99.9 6.6E-21 1.4E-25 159.7 14.6 155 19-248 213-369 (449)
165 PRK15467 ethanolamine utilizat 99.9 9.4E-21 2E-25 137.7 13.2 106 118-248 41-146 (158)
166 KOG0097|consensus 99.9 1.4E-20 3E-25 127.4 12.8 157 22-247 12-171 (215)
167 KOG1489|consensus 99.9 5.2E-21 1.1E-25 146.8 12.0 161 22-247 197-365 (366)
168 TIGR00231 small_GTP small GTP- 99.9 3.5E-20 7.5E-25 134.7 15.4 157 21-245 1-160 (161)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 3.9E-20 8.4E-25 140.0 16.1 116 114-248 83-198 (203)
170 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.5E-20 5.4E-25 155.4 15.9 158 18-248 200-359 (442)
171 cd01879 FeoB Ferrous iron tran 99.9 2.5E-20 5.4E-25 135.7 13.7 111 114-249 43-157 (158)
172 TIGR00487 IF-2 translation ini 99.8 4.8E-20 1E-24 158.1 16.1 163 17-246 83-247 (587)
173 TIGR03598 GTPase_YsxC ribosome 99.8 3.2E-20 7E-25 138.0 13.0 152 19-238 16-179 (179)
174 cd01889 SelB_euk SelB subfamil 99.8 5.8E-20 1.2E-24 138.1 14.0 115 113-248 67-185 (192)
175 PF10662 PduV-EutP: Ethanolami 99.8 3.8E-20 8.3E-25 128.8 11.7 140 23-246 3-143 (143)
176 cd00882 Ras_like_GTPase Ras-li 99.8 1.6E-19 3.4E-24 130.2 14.9 112 113-246 44-157 (157)
177 CHL00189 infB translation init 99.8 1.1E-19 2.4E-24 158.1 16.2 168 17-247 240-408 (742)
178 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.6E-19 3.6E-24 135.1 14.9 164 21-237 2-171 (195)
179 PLN00023 GTP-binding protein; 99.8 1.3E-19 2.9E-24 142.6 14.7 151 18-206 18-188 (334)
180 PRK00454 engB GTP-binding prot 99.8 2E-19 4.3E-24 135.8 15.2 164 19-248 22-193 (196)
181 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.4E-19 3.1E-24 138.2 14.4 201 23-246 1-220 (224)
182 cd04105 SR_beta Signal recogni 99.8 2.6E-19 5.7E-24 135.3 15.5 174 22-246 1-202 (203)
183 TIGR01393 lepA GTP-binding pro 99.8 1.8E-19 3.8E-24 155.4 15.6 111 112-248 68-179 (595)
184 PTZ00099 rab6; Provisional 99.8 2.7E-19 5.8E-24 132.1 14.1 116 109-248 24-141 (176)
185 PRK05306 infB translation init 99.8 2.2E-19 4.9E-24 157.5 15.7 164 17-246 286-449 (787)
186 PRK12317 elongation factor 1-a 99.8 5.1E-20 1.1E-24 154.3 11.1 185 19-239 4-195 (425)
187 COG1100 GTPase SAR1 and relate 99.8 3.4E-19 7.4E-24 136.8 13.8 176 19-248 3-184 (219)
188 TIGR00475 selB selenocysteine- 99.8 2.9E-19 6.4E-24 153.9 14.6 109 113-248 49-165 (581)
189 PRK09554 feoB ferrous iron tra 99.8 5.6E-19 1.2E-23 155.7 16.6 159 19-247 1-166 (772)
190 TIGR00491 aIF-2 translation in 99.8 1.9E-19 4E-24 154.2 12.8 185 19-246 2-213 (590)
191 COG2229 Predicted GTPase [Gene 99.8 1.6E-18 3.5E-23 123.3 15.4 170 17-247 6-176 (187)
192 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.9E-19 8.4E-24 135.1 13.2 109 107-240 70-185 (208)
193 TIGR00483 EF-1_alpha translati 99.8 1E-19 2.2E-24 152.5 10.9 188 17-239 3-197 (426)
194 KOG0393|consensus 99.8 9.9E-20 2.2E-24 133.0 9.2 159 19-247 2-177 (198)
195 cd01896 DRG The developmentall 99.8 9.7E-19 2.1E-23 134.7 15.2 52 176-249 175-226 (233)
196 COG0486 ThdF Predicted GTPase 99.8 5.2E-19 1.1E-23 143.3 13.8 160 18-248 214-375 (454)
197 cd00880 Era_like Era (E. coli 99.8 1.7E-18 3.8E-23 125.9 15.1 119 113-248 44-163 (163)
198 COG0536 Obg Predicted GTPase [ 99.8 4.7E-19 1E-23 137.7 11.5 162 23-248 161-332 (369)
199 COG0532 InfB Translation initi 99.8 2E-18 4.3E-23 141.9 15.0 164 19-246 3-167 (509)
200 TIGR03680 eif2g_arch translati 99.8 1.7E-18 3.8E-23 143.8 14.5 117 113-248 79-195 (406)
201 COG2262 HflX GTPases [General 99.8 3.9E-18 8.5E-23 135.9 15.4 161 19-248 190-355 (411)
202 PRK05433 GTP-binding protein L 99.8 4E-18 8.6E-23 147.2 16.5 112 111-248 71-183 (600)
203 COG0218 Predicted GTPase [Gene 99.8 9.6E-18 2.1E-22 122.1 15.2 165 20-248 23-196 (200)
204 KOG4252|consensus 99.8 1.6E-19 3.4E-24 127.2 5.4 159 20-248 19-180 (246)
205 PRK04004 translation initiatio 99.8 3.6E-18 7.7E-23 146.9 14.7 185 18-246 3-215 (586)
206 PF08477 Miro: Miro-like prote 99.8 2E-18 4.3E-23 119.7 10.4 118 23-188 1-119 (119)
207 PRK12736 elongation factor Tu; 99.8 6.2E-18 1.3E-22 140.0 14.3 178 18-248 9-200 (394)
208 cd01883 EF1_alpha Eukaryotic e 99.8 1.7E-18 3.8E-23 132.5 10.1 118 101-239 64-195 (219)
209 cd04168 TetM_like Tet(M)-like 99.8 1.9E-17 4E-22 127.8 15.6 128 110-248 60-234 (237)
210 KOG1423|consensus 99.8 1.5E-17 3.3E-22 127.3 14.6 177 16-247 67-269 (379)
211 cd01876 YihA_EngB The YihA (En 99.8 1.5E-17 3.4E-22 122.1 14.3 118 115-248 46-170 (170)
212 TIGR00437 feoB ferrous iron tr 99.8 6.6E-18 1.4E-22 145.7 13.3 109 114-247 41-153 (591)
213 PRK09866 hypothetical protein; 99.8 7.4E-17 1.6E-21 136.0 18.8 118 113-246 229-350 (741)
214 PRK12735 elongation factor Tu; 99.8 2.2E-17 4.7E-22 136.9 15.5 179 16-247 7-201 (396)
215 PRK04000 translation initiatio 99.8 2.1E-17 4.6E-22 137.3 15.0 115 114-248 85-200 (411)
216 CHL00071 tufA elongation facto 99.8 1.9E-17 4.1E-22 137.8 14.7 167 17-236 8-180 (409)
217 PRK10512 selenocysteinyl-tRNA- 99.8 2.2E-17 4.7E-22 142.8 15.3 113 114-247 51-164 (614)
218 PRK10218 GTP-binding protein; 99.8 3.9E-17 8.5E-22 140.5 16.2 179 20-248 4-194 (607)
219 TIGR01394 TypA_BipA GTP-bindin 99.8 3.2E-17 7E-22 141.1 15.3 118 110-248 60-190 (594)
220 PRK03003 GTP-binding protein D 99.8 4E-17 8.7E-22 138.3 15.6 159 66-248 38-198 (472)
221 KOG1532|consensus 99.8 2.7E-18 5.9E-23 129.4 7.4 223 12-248 10-263 (366)
222 TIGR00485 EF-Tu translation el 99.7 3E-17 6.5E-22 136.1 14.3 168 15-235 6-179 (394)
223 COG1163 DRG Predicted GTPase [ 99.7 4.1E-17 8.8E-22 126.1 13.8 182 22-249 64-289 (365)
224 PRK00049 elongation factor Tu; 99.7 4.4E-17 9.5E-22 135.0 14.8 180 15-247 6-201 (396)
225 KOG3883|consensus 99.7 2.1E-16 4.5E-21 108.7 15.3 161 20-248 8-174 (198)
226 PLN00043 elongation factor 1-a 99.7 1.2E-17 2.7E-22 139.6 11.2 185 17-239 3-203 (447)
227 COG1084 Predicted GTPase [Gene 99.7 8.4E-17 1.8E-21 124.7 14.3 175 4-246 140-333 (346)
228 KOG1145|consensus 99.7 1E-16 2.2E-21 131.4 15.3 165 17-246 149-313 (683)
229 PRK05124 cysN sulfate adenylyl 99.7 7E-18 1.5E-22 142.2 8.7 188 19-240 25-216 (474)
230 COG0370 FeoB Fe2+ transport sy 99.7 3.3E-17 7E-22 138.4 12.4 159 19-247 1-162 (653)
231 PLN03127 Elongation factor Tu; 99.7 9.4E-17 2E-21 134.2 15.0 178 18-248 58-251 (447)
232 COG5256 TEF1 Translation elong 99.7 1.8E-18 3.9E-23 137.8 4.4 188 17-239 3-201 (428)
233 PTZ00141 elongation factor 1- 99.7 3.6E-17 7.8E-22 137.0 11.7 186 17-239 3-203 (446)
234 TIGR02034 CysN sulfate adenyly 99.7 1.8E-17 3.8E-22 137.7 9.6 113 107-239 73-187 (406)
235 PRK13768 GTPase; Provisional 99.7 3.8E-17 8.3E-22 127.3 9.6 134 113-248 96-246 (253)
236 PLN03126 Elongation factor Tu; 99.7 2.3E-16 5E-21 132.6 14.8 165 18-235 78-248 (478)
237 cd04167 Snu114p Snu114p subfam 99.7 1E-16 2.2E-21 122.4 11.5 68 112-190 69-136 (213)
238 COG1160 Predicted GTPases [Gen 99.7 2.9E-16 6.3E-21 127.2 14.6 158 67-248 4-164 (444)
239 PTZ00327 eukaryotic translatio 99.7 4.4E-16 9.6E-21 130.0 14.5 115 114-248 117-232 (460)
240 TIGR03594 GTPase_EngA ribosome 99.7 6.5E-16 1.4E-20 130.2 15.0 157 68-248 1-159 (429)
241 cd04169 RF3 RF3 subfamily. Pe 99.7 8.4E-16 1.8E-20 120.6 14.4 76 108-194 65-140 (267)
242 PRK09518 bifunctional cytidyla 99.7 1.5E-15 3.2E-20 134.6 17.4 159 66-248 275-435 (712)
243 PRK05506 bifunctional sulfate 99.7 3.9E-16 8.4E-21 136.7 13.4 186 19-239 22-211 (632)
244 PRK00093 GTP-binding protein D 99.7 1.1E-15 2.3E-20 129.0 15.6 156 67-246 2-159 (435)
245 PF09439 SRPRB: Signal recogni 99.7 2.7E-16 5.9E-21 114.6 10.2 133 20-202 2-137 (181)
246 KOG0096|consensus 99.7 1.2E-16 2.6E-21 113.8 7.9 158 20-248 9-168 (216)
247 cd01886 EF-G Elongation factor 99.7 1.6E-15 3.5E-20 119.0 14.9 72 110-192 60-131 (270)
248 cd01899 Ygr210 Ygr210 subfamil 99.7 2.5E-15 5.4E-20 120.1 15.4 105 24-154 1-110 (318)
249 KOG0462|consensus 99.7 1E-15 2.2E-20 125.6 13.3 179 16-248 54-234 (650)
250 cd04104 p47_IIGP_like p47 (47- 99.7 1.3E-15 2.9E-20 114.7 12.6 119 115-248 53-183 (197)
251 PF03029 ATP_bind_1: Conserved 99.7 3.4E-17 7.4E-22 125.9 3.6 131 113-248 90-236 (238)
252 cd01885 EF2 EF2 (for archaea a 99.7 1.6E-15 3.5E-20 115.5 12.4 68 112-190 71-138 (222)
253 PRK00741 prfC peptide chain re 99.7 1.5E-15 3.2E-20 129.3 13.5 73 110-193 75-147 (526)
254 KOG0090|consensus 99.7 3.7E-15 7.9E-20 108.6 13.2 175 21-248 38-238 (238)
255 PF01926 MMR_HSR1: 50S ribosom 99.6 3.4E-15 7.3E-20 102.9 11.5 113 23-186 1-116 (116)
256 TIGR00503 prfC peptide chain r 99.6 1.2E-14 2.5E-19 123.9 16.8 72 109-191 75-146 (527)
257 PRK13351 elongation factor G; 99.6 5.4E-15 1.2E-19 130.9 15.3 70 112-192 71-140 (687)
258 TIGR00484 EF-G translation elo 99.6 8E-15 1.7E-19 129.6 15.8 135 19-192 8-142 (689)
259 cd04170 EF-G_bact Elongation f 99.6 2.2E-15 4.8E-20 119.0 10.2 70 112-192 62-131 (268)
260 KOG1707|consensus 99.6 2.6E-15 5.5E-20 124.2 10.6 163 18-247 6-173 (625)
261 PRK00007 elongation factor G; 99.6 1.9E-14 4.1E-19 127.2 16.5 72 111-193 72-143 (693)
262 PRK09435 membrane ATPase/prote 99.6 3.4E-15 7.4E-20 119.4 10.7 198 18-248 53-259 (332)
263 COG5257 GCD11 Translation init 99.6 3.8E-15 8.2E-20 115.0 10.4 190 18-248 7-201 (415)
264 PRK12739 elongation factor G; 99.6 2.4E-14 5.3E-19 126.5 16.1 134 20-192 7-140 (691)
265 KOG0458|consensus 99.6 5.2E-16 1.1E-20 128.2 5.1 188 18-239 174-372 (603)
266 PF03308 ArgK: ArgK protein; 99.6 3.6E-16 7.8E-21 118.4 3.7 193 19-247 27-228 (266)
267 TIGR00101 ureG urease accessor 99.6 3.9E-14 8.5E-19 106.4 14.0 102 114-248 92-195 (199)
268 PRK09602 translation-associate 99.6 4.1E-14 8.8E-19 116.5 14.8 107 22-154 2-113 (396)
269 KOG1191|consensus 99.6 8.1E-15 1.8E-19 119.1 10.3 174 17-248 264-449 (531)
270 COG4917 EutP Ethanolamine util 99.6 1.3E-14 2.9E-19 96.5 9.5 103 118-246 41-143 (148)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.7E-13 3.7E-18 103.3 15.8 164 22-248 1-183 (196)
272 KOG1144|consensus 99.6 2.7E-14 6E-19 120.8 11.8 191 18-247 472-685 (1064)
273 PTZ00258 GTP-binding protein; 99.6 7.9E-14 1.7E-18 113.7 14.1 112 11-154 11-126 (390)
274 COG1703 ArgK Putative periplas 99.6 2.4E-14 5.2E-19 110.0 9.2 199 16-248 46-253 (323)
275 TIGR00073 hypB hydrogenase acc 99.5 5.3E-14 1.2E-18 106.8 10.8 103 113-248 102-206 (207)
276 KOG1673|consensus 99.5 7.8E-14 1.7E-18 96.3 10.1 157 21-247 20-184 (205)
277 PRK12740 elongation factor G; 99.5 2.5E-13 5.4E-18 120.2 14.8 71 111-192 57-127 (668)
278 cd01850 CDC_Septin CDC/Septin. 99.5 3.3E-13 7.1E-18 106.5 13.2 27 21-47 4-30 (276)
279 COG0481 LepA Membrane GTPase L 99.5 1.7E-13 3.6E-18 111.1 11.6 112 112-248 74-185 (603)
280 COG3596 Predicted GTPase [Gene 99.5 5.3E-13 1.2E-17 101.5 11.4 172 18-248 36-221 (296)
281 PRK14845 translation initiatio 99.5 6.7E-13 1.5E-17 119.7 13.6 117 115-246 527-670 (1049)
282 TIGR00750 lao LAO/AO transport 99.5 3.2E-13 6.9E-18 108.1 10.1 111 110-248 123-237 (300)
283 PRK09601 GTP-binding protein Y 99.5 2.2E-12 4.7E-17 104.1 14.3 101 22-154 3-107 (364)
284 PRK10463 hydrogenase nickel in 99.5 1.5E-13 3.1E-18 107.4 7.3 57 176-247 229-287 (290)
285 KOG4423|consensus 99.5 5.7E-15 1.2E-19 105.0 -0.8 160 23-248 27-193 (229)
286 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.2E-12 4.7E-17 99.1 11.9 147 15-235 33-182 (225)
287 COG2895 CysN GTPases - Sulfate 99.4 1.2E-12 2.5E-17 102.7 10.1 179 19-238 4-192 (431)
288 KOG0463|consensus 99.4 3.6E-13 7.9E-18 106.3 7.2 204 21-244 133-353 (641)
289 COG0012 Predicted GTPase, prob 99.4 2.3E-12 5E-17 102.6 11.2 103 21-154 2-108 (372)
290 smart00053 DYNc Dynamin, GTPas 99.4 3.7E-11 8E-16 92.2 16.4 192 5-204 8-217 (240)
291 COG1217 TypA Predicted membran 99.4 7.2E-12 1.6E-16 101.5 13.0 178 19-248 3-194 (603)
292 KOG1490|consensus 99.4 2.1E-12 4.5E-17 105.5 8.2 163 17-246 164-338 (620)
293 cd01900 YchF YchF subfamily. 99.4 8.1E-12 1.8E-16 97.7 11.0 99 24-154 1-103 (274)
294 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 7.8E-12 1.7E-16 95.4 10.5 169 23-247 1-174 (232)
295 COG0050 TufB GTPases - transla 99.4 6.2E-12 1.3E-16 96.3 9.7 178 18-248 9-200 (394)
296 COG0378 HypB Ni2+-binding GTPa 99.3 4.8E-12 1E-16 91.7 8.3 80 143-247 116-199 (202)
297 TIGR00490 aEF-2 translation el 99.3 1.9E-11 4.1E-16 108.7 12.8 71 110-191 82-152 (720)
298 PRK07560 elongation factor EF- 99.3 4.5E-11 9.8E-16 106.6 14.3 69 112-191 85-153 (731)
299 KOG0461|consensus 99.3 4.6E-11 9.9E-16 93.6 12.0 118 113-248 69-192 (522)
300 COG5258 GTPBP1 GTPase [General 99.3 3.5E-11 7.7E-16 95.4 10.9 209 14-245 110-335 (527)
301 PF00350 Dynamin_N: Dynamin fa 99.3 7.1E-12 1.5E-16 92.1 6.6 68 114-187 101-168 (168)
302 PLN00116 translation elongatio 99.3 2E-11 4.4E-16 110.0 10.1 68 112-190 96-163 (843)
303 PTZ00416 elongation factor 2; 99.3 3.7E-11 8E-16 108.2 10.6 67 113-190 91-157 (836)
304 cd01853 Toc34_like Toc34-like 99.3 1.4E-10 3.1E-15 90.0 12.4 28 19-46 29-56 (249)
305 COG3276 SelB Selenocysteine-sp 99.3 1E-10 2.2E-15 94.6 11.8 159 23-248 2-161 (447)
306 TIGR00157 ribosome small subun 99.3 3.3E-11 7.1E-16 93.6 8.7 96 125-247 24-121 (245)
307 TIGR02836 spore_IV_A stage IV 99.2 5E-10 1.1E-14 90.7 14.8 24 21-44 17-40 (492)
308 KOG1143|consensus 99.2 5.5E-11 1.2E-15 94.1 8.7 195 21-244 167-383 (591)
309 COG0480 FusA Translation elong 99.2 6.4E-11 1.4E-15 103.3 9.5 140 18-195 7-146 (697)
310 KOG0410|consensus 99.2 5.2E-11 1.1E-15 92.5 7.7 155 19-247 176-339 (410)
311 TIGR00991 3a0901s02IAP34 GTP-b 99.2 5.5E-10 1.2E-14 88.1 13.4 124 19-190 36-166 (313)
312 PF04548 AIG1: AIG1 family; I 99.2 1E-09 2.2E-14 83.7 13.2 127 22-194 1-133 (212)
313 COG4108 PrfC Peptide chain rel 99.2 5E-10 1.1E-14 90.4 11.8 141 19-196 10-152 (528)
314 KOG1486|consensus 99.2 1.5E-09 3.3E-14 81.6 13.3 183 20-248 61-287 (364)
315 PF05049 IIGP: Interferon-indu 99.1 4.6E-10 1E-14 90.8 10.6 171 19-248 33-217 (376)
316 cd00066 G-alpha G protein alph 99.1 2.4E-10 5.2E-15 92.2 8.4 125 111-248 158-310 (317)
317 smart00275 G_alpha G protein a 99.1 3.1E-10 6.6E-15 92.3 8.9 126 111-248 181-333 (342)
318 cd01859 MJ1464 MJ1464. This f 99.1 3.5E-10 7.5E-15 82.1 7.3 85 142-248 11-95 (156)
319 PF00735 Septin: Septin; Inte 99.0 2.2E-09 4.8E-14 84.8 9.3 27 21-47 4-30 (281)
320 KOG2486|consensus 99.0 4.4E-10 9.6E-15 85.7 4.6 167 19-246 134-313 (320)
321 PRK12289 GTPase RsgA; Reviewed 99.0 2.2E-09 4.7E-14 87.3 8.5 87 140-247 86-173 (352)
322 KOG1534|consensus 99.0 2.7E-10 6E-15 83.3 3.0 88 113-204 97-191 (273)
323 KOG1491|consensus 99.0 8.4E-10 1.8E-14 86.4 5.7 108 16-155 15-126 (391)
324 KOG0460|consensus 99.0 3.3E-09 7.1E-14 83.2 8.4 163 19-233 52-219 (449)
325 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.3E-09 9.4E-14 76.4 7.8 90 139-247 4-93 (157)
326 KOG0466|consensus 98.9 1.1E-09 2.5E-14 84.5 4.8 114 115-248 126-240 (466)
327 smart00010 small_GTPase Small 98.9 1.7E-09 3.7E-14 75.1 5.4 71 142-238 45-115 (124)
328 PRK00098 GTPase RsgA; Reviewed 98.9 5.7E-09 1.2E-13 83.5 7.5 85 141-246 78-164 (298)
329 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.3E-09 1.8E-13 82.2 8.2 85 141-246 76-161 (287)
330 KOG0468|consensus 98.9 1E-08 2.2E-13 86.9 8.9 141 16-191 123-263 (971)
331 cd01855 YqeH YqeH. YqeH is an 98.9 1.5E-08 3.2E-13 76.0 8.8 94 139-248 30-124 (190)
332 PRK10416 signal recognition pa 98.9 4.9E-08 1.1E-12 78.5 12.2 177 20-241 113-302 (318)
333 TIGR00993 3a0901s04IAP86 chlor 98.9 3.9E-08 8.4E-13 84.4 12.0 124 21-191 118-250 (763)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7.2E-09 1.6E-13 73.8 6.6 81 136-236 4-84 (141)
335 PRK14974 cell division protein 98.9 5.6E-08 1.2E-12 78.5 12.4 101 113-242 222-323 (336)
336 cd01856 YlqF YlqF. Proteins o 98.8 1.6E-08 3.4E-13 74.5 8.0 90 134-247 10-99 (171)
337 TIGR00092 GTP-binding protein 98.8 1.2E-08 2.6E-13 82.7 7.3 101 22-154 3-108 (368)
338 PRK12288 GTPase RsgA; Reviewed 98.8 3.6E-08 7.9E-13 80.2 9.8 89 141-247 118-206 (347)
339 cd01849 YlqF_related_GTPase Yl 98.8 1.9E-08 4.1E-13 72.8 7.4 81 145-246 1-82 (155)
340 PF05783 DLIC: Dynein light in 98.8 2.8E-07 6.2E-12 77.5 14.5 42 4-45 6-49 (472)
341 KOG1487|consensus 98.8 4.2E-08 9E-13 74.4 8.2 181 22-249 60-281 (358)
342 KOG0448|consensus 98.8 1.8E-07 4E-12 79.8 12.9 165 17-192 105-276 (749)
343 COG5019 CDC3 Septin family pro 98.8 1.3E-07 2.8E-12 75.4 11.0 28 19-46 21-48 (373)
344 PF02492 cobW: CobW/HypB/UreG, 98.7 5.3E-08 1.1E-12 72.1 8.1 86 114-206 85-171 (178)
345 cd03112 CobW_like The function 98.7 5.7E-08 1.2E-12 70.4 8.1 71 113-189 86-158 (158)
346 TIGR03596 GTPase_YlqF ribosome 98.7 6.1E-08 1.3E-12 76.9 8.6 90 134-247 12-101 (276)
347 KOG1954|consensus 98.7 2E-07 4.3E-12 74.3 11.1 151 20-192 57-226 (532)
348 KOG1707|consensus 98.7 3.3E-07 7.1E-12 77.0 12.8 70 111-191 471-540 (625)
349 TIGR00064 ftsY signal recognit 98.7 3.4E-07 7.3E-12 72.2 11.7 178 19-241 70-260 (272)
350 cd01858 NGP_1 NGP-1. Autoanti 98.6 4.4E-08 9.5E-13 71.1 5.1 26 20-45 101-126 (157)
351 KOG0082|consensus 98.6 8.9E-07 1.9E-11 71.1 12.5 134 102-248 183-343 (354)
352 KOG1533|consensus 98.6 6.9E-09 1.5E-13 77.4 0.2 78 110-191 93-177 (290)
353 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.8E-07 3.9E-12 74.6 8.2 90 134-247 15-104 (287)
354 KOG0459|consensus 98.6 1.4E-08 3E-13 81.5 1.6 193 14-241 72-278 (501)
355 TIGR03597 GTPase_YqeH ribosome 98.6 3.3E-07 7.2E-12 75.4 8.9 92 139-247 59-151 (360)
356 KOG1547|consensus 98.6 6.3E-07 1.4E-11 67.3 9.2 27 21-47 46-72 (336)
357 cd04178 Nucleostemin_like Nucl 98.6 1.2E-07 2.7E-12 69.5 5.3 28 19-46 115-142 (172)
358 COG0523 Putative GTPases (G3E 98.6 7.4E-07 1.6E-11 71.6 10.1 97 114-231 85-184 (323)
359 cd01851 GBP Guanylate-binding 98.6 6.9E-07 1.5E-11 68.6 9.6 26 19-44 5-30 (224)
360 TIGR01425 SRP54_euk signal rec 98.5 1.7E-06 3.6E-11 72.0 11.8 71 113-191 182-253 (429)
361 PRK11537 putative GTP-binding 98.5 5.3E-06 1.1E-10 67.0 14.4 83 115-206 92-177 (318)
362 PRK11889 flhF flagellar biosyn 98.5 1.7E-06 3.7E-11 70.6 11.3 160 19-206 239-404 (436)
363 PRK14722 flhF flagellar biosyn 98.5 1.8E-06 3.9E-11 70.6 11.2 41 4-44 112-160 (374)
364 PRK00771 signal recognition pa 98.5 1.9E-06 4.2E-11 72.1 11.3 68 115-191 177-246 (437)
365 KOG0467|consensus 98.5 4.8E-07 1E-11 78.1 7.6 130 19-189 7-136 (887)
366 KOG2655|consensus 98.5 1.5E-06 3.3E-11 69.9 10.0 27 21-47 21-47 (366)
367 cd03115 SRP The signal recogni 98.5 3.7E-06 8.1E-11 62.0 11.3 71 113-191 82-153 (173)
368 KOG0705|consensus 98.4 2.9E-07 6.2E-12 76.7 5.2 160 15-248 24-188 (749)
369 KOG3905|consensus 98.4 8.6E-06 1.9E-10 64.1 12.9 166 65-248 51-289 (473)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 3.7E-07 8E-12 65.0 5.1 24 22-45 84-107 (141)
371 PRK05703 flhF flagellar biosyn 98.4 7.1E-06 1.5E-10 68.8 13.2 157 21-206 221-384 (424)
372 PRK09563 rbgA GTPase YlqF; Rev 98.4 4.3E-07 9.3E-12 72.5 5.6 28 19-46 119-146 (287)
373 TIGR03596 GTPase_YlqF ribosome 98.4 4.8E-07 1E-11 71.8 5.6 27 19-45 116-142 (276)
374 cd01855 YqeH YqeH. YqeH is an 98.4 6.8E-07 1.5E-11 67.0 6.1 26 20-45 126-151 (190)
375 TIGR03597 GTPase_YqeH ribosome 98.4 1.6E-07 3.6E-12 77.1 2.8 135 21-203 154-292 (360)
376 PF09547 Spore_IV_A: Stage IV 98.4 1.1E-05 2.3E-10 66.1 12.9 26 21-46 17-42 (492)
377 PRK13796 GTPase YqeH; Provisio 98.4 2.6E-06 5.7E-11 70.2 9.3 94 137-247 62-157 (365)
378 PF03193 DUF258: Protein of un 98.4 1.3E-07 2.9E-12 67.8 1.4 26 20-45 34-59 (161)
379 TIGR02475 CobW cobalamin biosy 98.4 5.8E-06 1.3E-10 67.4 11.0 86 114-205 93-201 (341)
380 PRK14721 flhF flagellar biosyn 98.3 1.5E-05 3.2E-10 66.4 13.0 41 4-44 167-214 (420)
381 PRK01889 GTPase RsgA; Reviewed 98.3 4.4E-06 9.5E-11 68.6 9.8 84 141-245 110-193 (356)
382 cd01859 MJ1464 MJ1464. This f 98.3 1.1E-06 2.4E-11 63.7 5.7 25 20-44 100-124 (156)
383 COG1161 Predicted GTPases [Gen 98.3 8.6E-07 1.9E-11 71.7 4.9 31 16-46 127-157 (322)
384 KOG0447|consensus 98.3 1.8E-05 4E-10 66.4 12.6 181 14-204 301-508 (980)
385 PRK10867 signal recognition pa 98.3 8.1E-06 1.8E-10 68.3 10.7 70 113-190 183-253 (433)
386 PRK12724 flagellar biosynthesi 98.3 2.2E-06 4.8E-11 70.7 7.2 159 20-206 222-386 (432)
387 cd03114 ArgK-like The function 98.3 4.1E-06 8.9E-11 60.0 7.8 59 112-188 90-148 (148)
388 PRK12289 GTPase RsgA; Reviewed 98.3 1.1E-06 2.4E-11 71.7 5.3 22 23-44 174-195 (352)
389 PRK12727 flagellar biosynthesi 98.3 2.3E-05 4.9E-10 66.6 13.1 83 113-206 428-511 (559)
390 TIGR03348 VI_IcmF type VI secr 98.3 3.3E-06 7.2E-11 79.4 8.9 76 115-191 162-257 (1169)
391 cd01849 YlqF_related_GTPase Yl 98.3 1.6E-06 3.5E-11 62.7 5.4 27 19-45 98-124 (155)
392 PRK12726 flagellar biosynthesi 98.3 8.1E-06 1.8E-10 66.5 9.8 25 19-43 204-228 (407)
393 PF00448 SRP54: SRP54-type pro 98.3 6.2E-06 1.3E-10 61.9 8.6 85 112-206 82-167 (196)
394 cd01856 YlqF YlqF. Proteins o 98.3 1.4E-06 3.1E-11 64.1 5.0 29 18-46 112-140 (171)
395 PRK12288 GTPase RsgA; Reviewed 98.3 1.2E-06 2.5E-11 71.5 4.8 22 23-44 207-228 (347)
396 KOG0464|consensus 98.3 6.6E-07 1.4E-11 72.4 3.2 140 20-198 36-175 (753)
397 KOG0465|consensus 98.2 3E-06 6.6E-11 71.7 6.5 149 19-206 37-185 (721)
398 PRK06995 flhF flagellar biosyn 98.2 3.3E-05 7.2E-10 65.4 12.6 24 20-43 255-278 (484)
399 KOG3886|consensus 98.2 8.8E-06 1.9E-10 61.0 8.0 129 65-196 3-135 (295)
400 TIGR00959 ffh signal recogniti 98.2 1.9E-05 4.1E-10 66.1 10.8 71 112-190 181-252 (428)
401 PRK06731 flhF flagellar biosyn 98.2 4.6E-05 9.9E-10 59.9 12.2 84 113-206 154-238 (270)
402 TIGR00157 ribosome small subun 98.2 3.5E-06 7.7E-11 65.6 5.9 24 21-44 120-143 (245)
403 COG1419 FlhF Flagellar GTP-bin 98.2 1.4E-05 2.9E-10 65.3 8.9 156 19-204 201-363 (407)
404 PRK14723 flhF flagellar biosyn 98.2 3.7E-05 8.1E-10 68.2 12.0 160 21-206 185-350 (767)
405 COG5192 BMS1 GTP-binding prote 98.1 1.8E-05 3.8E-10 66.8 8.9 110 19-191 67-177 (1077)
406 PRK12723 flagellar biosynthesi 98.1 6.8E-05 1.5E-09 62.0 12.4 164 20-206 173-339 (388)
407 COG3640 CooC CO dehydrogenase 98.1 4.8E-05 1E-09 57.4 10.1 45 141-190 153-198 (255)
408 PRK13695 putative NTPase; Prov 98.0 0.00012 2.7E-09 53.9 11.3 22 22-43 1-22 (174)
409 cd01854 YjeQ_engC YjeQ/EngC. 98.0 8.7E-06 1.9E-10 65.0 5.3 25 21-45 161-185 (287)
410 COG1162 Predicted GTPases [Gen 98.0 5E-05 1.1E-09 59.8 9.1 86 142-247 78-165 (301)
411 PRK00098 GTPase RsgA; Reviewed 98.0 1.4E-05 3E-10 64.1 6.0 25 21-45 164-188 (298)
412 PRK14737 gmk guanylate kinase; 98.0 0.00012 2.5E-09 54.6 10.3 65 20-93 3-71 (186)
413 COG1618 Predicted nucleotide k 98.0 0.00018 3.9E-09 51.2 10.3 24 20-43 4-27 (179)
414 PRK13796 GTPase YqeH; Provisio 98.0 1.5E-05 3.2E-10 65.8 5.6 23 21-43 160-182 (365)
415 COG1162 Predicted GTPases [Gen 98.0 1.4E-05 3E-10 62.9 5.0 23 21-43 164-186 (301)
416 PF06858 NOG1: Nucleolar GTP-b 97.9 4.2E-05 9E-10 44.3 5.6 46 141-188 11-58 (58)
417 PF13555 AAA_29: P-loop contai 97.9 6.6E-06 1.4E-10 48.9 2.2 21 23-43 25-45 (62)
418 PRK14738 gmk guanylate kinase; 97.9 1.2E-05 2.7E-10 60.9 3.9 36 1-44 1-36 (206)
419 COG1126 GlnQ ABC-type polar am 97.9 1.3E-05 2.8E-10 59.8 3.6 23 21-43 28-50 (240)
420 KOG1486|consensus 97.9 0.00013 2.8E-09 55.6 8.6 104 65-169 61-166 (364)
421 KOG1424|consensus 97.8 4E-05 8.7E-10 63.9 6.0 87 127-233 158-244 (562)
422 PF13207 AAA_17: AAA domain; P 97.8 1.5E-05 3.3E-10 54.9 2.9 22 23-44 1-22 (121)
423 KOG2485|consensus 97.8 5.1E-05 1.1E-09 59.5 5.8 30 14-43 136-165 (335)
424 COG3840 ThiQ ABC-type thiamine 97.8 3E-05 6.5E-10 56.3 4.1 26 21-46 25-50 (231)
425 KOG0780|consensus 97.8 0.00016 3.5E-09 58.5 8.5 121 19-159 99-229 (483)
426 cd04178 Nucleostemin_like Nucl 97.8 7.3E-05 1.6E-09 54.9 5.9 45 145-192 1-45 (172)
427 KOG3886|consensus 97.8 8.4E-05 1.8E-09 55.9 6.1 115 20-151 3-124 (295)
428 COG1136 SalX ABC-type antimicr 97.7 2.2E-05 4.7E-10 59.6 2.7 21 23-43 33-53 (226)
429 KOG2203|consensus 97.7 4.4E-05 9.5E-10 64.1 4.5 42 6-47 22-63 (772)
430 COG0194 Gmk Guanylate kinase [ 97.7 4.1E-05 8.8E-10 55.8 3.4 62 22-92 5-69 (191)
431 KOG2743|consensus 97.7 0.00018 3.8E-09 56.3 7.0 31 15-45 51-81 (391)
432 smart00072 GuKc Guanylate kina 97.7 0.00032 7E-09 52.2 8.0 61 23-92 4-69 (184)
433 COG1116 TauB ABC-type nitrate/ 97.6 6.7E-05 1.5E-09 57.3 4.3 23 23-45 31-53 (248)
434 PF13191 AAA_16: AAA ATPase do 97.6 5.8E-05 1.3E-09 56.0 3.7 39 4-43 8-46 (185)
435 cd03110 Fer4_NifH_child This p 97.6 0.0014 3.1E-08 48.4 10.9 81 112-206 91-171 (179)
436 COG0541 Ffh Signal recognition 97.6 0.0012 2.5E-08 54.6 11.0 125 19-161 98-230 (451)
437 COG3523 IcmF Type VI protein s 97.6 0.0002 4.4E-09 66.4 7.2 76 115-191 175-270 (1188)
438 PF00503 G-alpha: G-protein al 97.6 0.00046 1E-08 57.7 8.9 126 112-248 234-389 (389)
439 COG0563 Adk Adenylate kinase a 97.6 5.5E-05 1.2E-09 55.8 2.9 23 22-44 1-23 (178)
440 cd02019 NK Nucleoside/nucleoti 97.6 6.8E-05 1.5E-09 46.1 2.7 22 23-44 1-22 (69)
441 PRK08118 topology modulation p 97.6 6E-05 1.3E-09 55.1 2.8 23 22-44 2-24 (167)
442 PF00005 ABC_tran: ABC transpo 97.5 6.8E-05 1.5E-09 52.9 2.9 23 22-44 12-34 (137)
443 PRK08233 hypothetical protein; 97.5 6.3E-05 1.4E-09 55.8 2.8 26 19-44 1-26 (182)
444 PRK07261 topology modulation p 97.5 6.6E-05 1.4E-09 55.2 2.8 21 23-43 2-22 (171)
445 smart00763 AAA_PrkA PrkA AAA d 97.5 9.6E-05 2.1E-09 60.0 3.9 39 4-44 63-101 (361)
446 PF13521 AAA_28: AAA domain; P 97.5 5.9E-05 1.3E-09 55.0 2.5 22 23-44 1-22 (163)
447 PRK14530 adenylate kinase; Pro 97.5 6.9E-05 1.5E-09 57.3 2.9 25 20-44 2-26 (215)
448 COG3839 MalK ABC-type sugar tr 97.5 8E-05 1.7E-09 60.1 3.3 24 23-46 31-54 (338)
449 KOG2484|consensus 97.5 0.00026 5.6E-09 57.4 5.9 69 135-206 138-206 (435)
450 cd00071 GMPK Guanosine monopho 97.5 0.00017 3.7E-09 50.9 4.4 21 24-44 2-22 (137)
451 cd00820 PEPCK_HprK Phosphoenol 97.5 8E-05 1.7E-09 49.7 2.5 21 22-42 16-36 (107)
452 PF13671 AAA_33: AAA domain; P 97.5 8E-05 1.7E-09 52.9 2.8 20 24-43 2-21 (143)
453 PF03215 Rad17: Rad17 cell cyc 97.5 0.003 6.5E-08 54.5 12.6 26 20-45 44-69 (519)
454 PRK05480 uridine/cytidine kina 97.5 8.1E-05 1.8E-09 56.6 2.8 27 18-44 3-29 (209)
455 COG2884 FtsE Predicted ATPase 97.5 0.00013 2.8E-09 53.5 3.5 23 23-45 30-52 (223)
456 KOG0469|consensus 97.4 0.00058 1.3E-08 57.2 7.4 83 113-206 97-182 (842)
457 PRK10751 molybdopterin-guanine 97.4 0.00011 2.3E-09 53.8 2.8 26 19-44 4-29 (173)
458 KOG2484|consensus 97.4 0.00017 3.7E-09 58.5 4.1 38 19-56 250-287 (435)
459 PF03205 MobB: Molybdopterin g 97.4 0.00011 2.4E-09 52.0 2.8 22 22-43 1-22 (140)
460 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00011 2.4E-09 54.2 2.8 24 21-44 25-48 (177)
461 PRK10078 ribose 1,5-bisphospho 97.4 0.00011 2.4E-09 54.8 2.9 22 23-44 4-25 (186)
462 TIGR00235 udk uridine kinase. 97.4 0.00011 2.4E-09 55.8 2.7 26 19-44 4-29 (207)
463 COG3842 PotA ABC-type spermidi 97.4 0.00016 3.5E-09 58.7 3.6 24 23-46 33-56 (352)
464 COG3638 ABC-type phosphate/pho 97.4 0.00012 2.7E-09 55.3 2.7 21 23-43 32-52 (258)
465 PF05621 TniB: Bacterial TniB 97.4 0.0012 2.6E-08 52.3 8.2 60 18-87 58-117 (302)
466 cd03238 ABC_UvrA The excision 97.4 0.00013 2.9E-09 53.7 2.8 21 22-42 22-42 (176)
467 COG4181 Predicted ABC-type tra 97.4 0.00027 5.8E-09 51.0 4.1 41 22-79 37-77 (228)
468 COG1120 FepC ABC-type cobalami 97.4 0.0023 4.9E-08 49.8 9.4 29 15-43 21-50 (258)
469 TIGR02322 phosphon_PhnN phosph 97.4 0.00014 3.1E-09 53.8 2.8 22 23-44 3-24 (179)
470 COG4619 ABC-type uncharacteriz 97.4 0.00029 6.4E-09 50.6 4.1 32 12-43 19-51 (223)
471 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00015 3.2E-09 54.1 2.9 23 21-43 3-25 (188)
472 PF03266 NTPase_1: NTPase; In 97.3 0.00016 3.4E-09 52.9 2.8 22 23-44 1-22 (168)
473 PF00625 Guanylate_kin: Guanyl 97.3 0.00038 8.2E-09 51.8 4.8 63 21-92 2-69 (183)
474 KOG1424|consensus 97.3 0.00015 3.2E-09 60.6 2.8 34 21-54 314-347 (562)
475 TIGR00960 3a0501s02 Type II (G 97.3 0.00016 3.5E-09 55.3 2.9 23 22-44 30-52 (216)
476 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00016 3.5E-09 55.3 2.9 24 22-45 31-54 (218)
477 COG1124 DppF ABC-type dipeptid 97.3 0.00031 6.7E-09 53.5 4.2 23 23-45 35-57 (252)
478 smart00382 AAA ATPases associa 97.3 0.00019 4.1E-09 50.4 3.0 27 21-47 2-28 (148)
479 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00017 3.6E-09 55.0 2.9 32 14-45 19-51 (211)
480 PF13238 AAA_18: AAA domain; P 97.3 0.00018 3.9E-09 49.9 2.8 21 24-44 1-21 (129)
481 TIGR00554 panK_bact pantothena 97.3 0.00023 5E-09 56.6 3.6 25 19-43 60-84 (290)
482 TIGR01166 cbiO cobalt transpor 97.3 0.00018 3.9E-09 53.9 2.9 23 23-45 20-42 (190)
483 cd03264 ABC_drug_resistance_li 97.3 0.00018 3.8E-09 54.8 2.8 22 23-44 27-48 (211)
484 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00018 4E-09 54.5 2.9 33 13-45 17-50 (205)
485 cd03261 ABC_Org_Solvent_Resist 97.3 0.00018 4E-09 55.7 2.9 23 23-45 28-50 (235)
486 COG0552 FtsY Signal recognitio 97.3 0.00078 1.7E-08 53.8 6.3 70 112-189 220-296 (340)
487 PRK01889 GTPase RsgA; Reviewed 97.3 0.00044 9.4E-09 57.0 5.1 23 22-44 196-218 (356)
488 PTZ00301 uridine kinase; Provi 97.3 0.0002 4.3E-09 54.4 2.8 24 19-42 1-24 (210)
489 COG1134 TagH ABC-type polysacc 97.3 0.00035 7.6E-09 53.2 4.1 23 22-44 54-76 (249)
490 PRK08099 bifunctional DNA-bind 97.3 0.00021 4.6E-09 59.6 3.2 37 4-44 206-242 (399)
491 cd02023 UMPK Uridine monophosp 97.3 0.00018 4E-09 54.2 2.6 21 24-44 2-22 (198)
492 TIGR03608 L_ocin_972_ABC putat 97.3 0.00021 4.5E-09 54.2 2.9 23 22-44 25-47 (206)
493 TIGR02673 FtsE cell division A 97.3 0.00021 4.6E-09 54.6 2.9 24 22-45 29-52 (214)
494 COG4559 ABC-type hemin transpo 97.3 0.00021 4.5E-09 53.3 2.7 23 23-45 29-51 (259)
495 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00022 4.8E-09 50.8 2.8 24 22-45 27-50 (144)
496 cd03292 ABC_FtsE_transporter F 97.3 0.00021 4.6E-09 54.5 2.9 23 22-44 28-50 (214)
497 cd03265 ABC_DrrA DrrA is the A 97.3 0.00022 4.7E-09 54.8 2.9 23 22-44 27-49 (220)
498 cd03224 ABC_TM1139_LivF_branch 97.3 0.00021 4.6E-09 54.9 2.8 24 22-45 27-50 (222)
499 cd03259 ABC_Carb_Solutes_like 97.3 0.00022 4.7E-09 54.4 2.9 23 22-44 27-49 (213)
500 TIGR03263 guanyl_kin guanylate 97.3 0.00021 4.6E-09 52.9 2.7 23 23-45 3-25 (180)
No 1
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.5e-30 Score=191.65 Aligned_cols=184 Identities=52% Similarity=0.829 Sum_probs=141.6
Q ss_pred hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHH
Q psy871 5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH 84 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~ 84 (249)
.|||.+.+.-+|.+.++++|+++|++|||||||++++.+..+....||.++....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~------------------------ 56 (184)
T smart00178 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEEL------------------------ 56 (184)
T ss_pred ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEE------------------------
Confidence 37888888877888999999999999999999999999876665555554332222
Q ss_pred HHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH
Q psy871 85 MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS 164 (249)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~ 164 (249)
...+..+.+||+||++.+...+. .++..+|++++|+|++++.++.....
T Consensus 57 -------------------------~~~~~~~~~~D~~G~~~~~~~~~------~~~~~ad~ii~vvD~~~~~~~~~~~~ 105 (184)
T smart00178 57 -------------------------AIGNIKFTTFDLGGHQQARRLWK------DYFPEVNGIVYLVDAYDKERFAESKR 105 (184)
T ss_pred -------------------------EECCEEEEEEECCCCHHHHHHHH------HHhCCCCEEEEEEECCcHHHHHHHHH
Confidence 01134688999999988776666 66788999999999999999988877
Q ss_pred HHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 165 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
++.+++......++|+++|+||+|+......+++.+.+........ ..+...+.+.+++|||++|.|++++++||
T Consensus 106 ~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~-----~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 106 ELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGS-----KGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred HHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccc-----ccccCCceeEEEEeecccCCChHHHHHHH
Confidence 8887765544468999999999999877778888877754321100 00112356789999999999999999999
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+++
T Consensus 181 ~~~~ 184 (184)
T smart00178 181 SQYI 184 (184)
T ss_pred HhhC
Confidence 8764
No 2
>KOG0092|consensus
Probab=99.97 E-value=1.4e-30 Score=185.23 Aligned_cols=161 Identities=22% Similarity=0.265 Sum_probs=137.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++.||+|+|..++|||||+-|+..+.|.. ..||++...-+...
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv----------------------------------- 47 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTV----------------------------------- 47 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEE-----------------------------------
Confidence 467899999999999999999999988875 46777755444411
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.+.+....+.+|||.|+++|.++.. .+|+.++++|+|||+++.++|..++.|++++.+... ++
T Consensus 48 ----------~~~~~~ikfeIWDTAGQERy~slap------MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~ 110 (200)
T KOG0092|consen 48 ----------TVDDNTIKFEIWDTAGQERYHSLAP------MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PN 110 (200)
T ss_pred ----------EeCCcEEEEEEEEcCCccccccccc------ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CC
Confidence 1122245688999999999999999 999999999999999999999999999999977654 67
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+-+.+|+||+||.+ ++..++...+....+ ..+|++|||+|.|++++|..|.+.|
T Consensus 111 ~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 111 IVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLFFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred eEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEEEEEecccccCHHHHHHHHHHhc
Confidence 77888999999977 788899999998876 8999999999999999999998865
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=5e-30 Score=188.63 Aligned_cols=162 Identities=25% Similarity=0.393 Sum_probs=126.1
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++++++|+++|++|||||||+++|..+.+....||.+.....+
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~------------------------------------- 48 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV------------------------------------- 48 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEE-------------------------------------
Confidence 3578899999999999999999998766554445544322111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+..+.+||++|++++...+. .++..+|++++|+|++++.++.....++.+++......+
T Consensus 49 ------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~ 110 (168)
T cd04149 49 ------------TYKNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRD 110 (168)
T ss_pred ------------EECCEEEEEEECCCCHHHHHHHH------HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcC
Confidence 11245699999999998877766 667889999999999999999888888888876544467
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+|+++|+||+|+.+....+++.+.++... .....++++++||++|.|++++|+||.+
T Consensus 111 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 111 ALLLVFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CcEEEEEECcCCccCCCHHHHHHHcCCCc------------cCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 99999999999987667777777665322 1223468999999999999999999975
No 4
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.5e-29 Score=188.13 Aligned_cols=164 Identities=26% Similarity=0.399 Sum_probs=127.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++++.||+++|++|||||||++++..+++....||++.....+
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~------------------------------------- 56 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV------------------------------------- 56 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEE-------------------------------------
Confidence 4778999999999999999999998766655455554322111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+..+.+||+||++++...+. .++..+|++++|+|+++++++.....++..++......+
T Consensus 57 ------------~~~~~~~~i~D~~Gq~~~~~~~~------~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~ 118 (181)
T PLN00223 57 ------------EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
T ss_pred ------------EECCEEEEEEECCCCHHHHHHHH------HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCC
Confidence 12245699999999998887777 667889999999999999999888878888766544468
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++++||+|+.+....+++...+.... ...+.+.+++|||++|+|++++++||.+.+
T Consensus 119 ~piilv~NK~Dl~~~~~~~~~~~~l~l~~------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 119 AVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHhCccc------------cCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 99999999999988766677666554322 122345788999999999999999998865
No 5
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=6.5e-29 Score=186.65 Aligned_cols=188 Identities=57% Similarity=0.875 Sum_probs=139.7
Q ss_pred hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHH
Q psy871 5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH 84 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~ 84 (249)
-+|+-..+.-+|+..++.+|+++|++|||||||++++.+..+..+.||.+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i------------------------ 58 (190)
T cd00879 3 FDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEEL------------------------ 58 (190)
T ss_pred HHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEE------------------------
Confidence 35667778889999999999999999999999999999877655555554332222
Q ss_pred HHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH
Q psy871 85 MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS 164 (249)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~ 164 (249)
...+..+.+||+||+..+...+. .++..+|++++|+|+++..++.....
T Consensus 59 -------------------------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~ad~iilV~D~~~~~s~~~~~~ 107 (190)
T cd00879 59 -------------------------TIGNIKFKTFDLGGHEQARRLWK------DYFPEVDGIVFLVDAADPERFQESKE 107 (190)
T ss_pred -------------------------EECCEEEEEEECCCCHHHHHHHH------HHhccCCEEEEEEECCcHHHHHHHHH
Confidence 01124578999999887765554 55678999999999999988887777
Q ss_pred HHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 165 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
++.+++......+.|+++++||+|+......+++.+.++........ .....+.....+++++|||++|+|++++|+||
T Consensus 108 ~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l 186 (190)
T cd00879 108 ELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGK-GVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred HHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccc-cccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence 88887765445679999999999998777788888777653311100 00000111234689999999999999999999
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+++
T Consensus 187 ~~~~ 190 (190)
T cd00879 187 SQYL 190 (190)
T ss_pred HhhC
Confidence 8864
No 6
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=5.2e-29 Score=185.48 Aligned_cols=164 Identities=27% Similarity=0.426 Sum_probs=125.1
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..++.||+++|++|||||||++++..+.+....||.+.....+
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~------------------------------------- 56 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETV------------------------------------- 56 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEE-------------------------------------
Confidence 3556899999999999999999997666654445544222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+..+.+||++|++++...+. .++..+|++++|+|++++.++.....++.+++......+
T Consensus 57 ------------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~ 118 (182)
T PTZ00133 57 ------------EYKNLKFTMWDVGGQDKLRPLWR------HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRD 118 (182)
T ss_pred ------------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcC
Confidence 12345799999999988887776 667899999999999999999988888888765544457
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+....+++...+.... ...+.+.++++||++|.|+++++++|.+.+
T Consensus 119 ~piilv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 119 AVLLVFANKQDLPNAMSTTEVTEKLGLHS------------VRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCEEEEEeCCCCCCCCCHHHHHHHhCCCc------------ccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 89999999999977656666655444321 122346788999999999999999998764
No 7
>KOG0084|consensus
Probab=99.97 E-value=1e-29 Score=181.49 Aligned_cols=160 Identities=26% Similarity=0.293 Sum_probs=134.1
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.-+||+|+|.+|+|||+|+.|+.++.+. .+..|++.+.....
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt------------------------------------- 50 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRT------------------------------------- 50 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEE-------------------------------------
Confidence 3469999999999999999999998887 56677776655542
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+++....+.+|||+|+++|.++.. ++|+.+|++|+|+|+++..+|..+..|+.++-+. ...+.
T Consensus 51 --------~e~~gk~iKlQIWDTAGQERFrtit~------syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v 115 (205)
T KOG0084|consen 51 --------VELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENV 115 (205)
T ss_pred --------eeecceEEEEEeeeccccHHHhhhhH------hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCC
Confidence 12344456799999999999998888 9999999999999999999999999999998544 34678
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCcee-EEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE-LFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|.++|+||||+.+ .+..++...+....+ .+ ++++|||++.|+++.|..|+..|
T Consensus 116 ~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~-----------------~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 116 PKLLVGNKCDLTEKRVVSTEEAQEFADELG-----------------IPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred CeEEEeeccccHhheecCHHHHHHHHHhcC-----------------CcceeecccCCccCHHHHHHHHHHHH
Confidence 9999999999976 566677777777766 56 99999999999999999988654
No 8
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=4e-29 Score=185.14 Aligned_cols=164 Identities=26% Similarity=0.404 Sum_probs=126.0
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+++++||+++|++|||||||++++..+.+....||++.....+
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~------------------------------------- 52 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETV------------------------------------- 52 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEE-------------------------------------
Confidence 3567999999999999999999997665544445444222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
......+.+||++|++++...+. .++..+|++++|+|++++.++....+++..++......+
T Consensus 53 ------------~~~~~~l~l~D~~G~~~~~~~~~------~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~ 114 (175)
T smart00177 53 ------------TYKNISFTVWDVGGQDKIRPLWR------HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRD 114 (175)
T ss_pred ------------EECCEEEEEEECCCChhhHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcC
Confidence 11235689999999988887776 667899999999999999999988888888876544457
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+....+++.+.+.... ...+.+.++++||++|.|++++++||.+.+
T Consensus 115 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 115 AVILVFANKQDLPDAMKAAEITEKLGLHS------------IRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CcEEEEEeCcCcccCCCHHHHHHHhCccc------------cCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999987666666666554321 122346788999999999999999998764
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=3.2e-29 Score=185.25 Aligned_cols=175 Identities=39% Similarity=0.573 Sum_probs=147.7
Q ss_pred HHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh
Q psy871 8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK 87 (249)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~ 87 (249)
|..++..+....++.+|+++|+.||||||++++|.........||.+.....+.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~-------------------------- 54 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIK-------------------------- 54 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEE--------------------------
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceee--------------------------
Confidence 345666777779999999999999999999999998777777777776655551
Q ss_pred cCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHH
Q psy871 88 DDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ 167 (249)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~ 167 (249)
..+..+.+||.+|+..+...++ .++..+|++++|+|+++.+.+....+.+.
T Consensus 55 -----------------------~~~~~~~~~d~gG~~~~~~~w~------~y~~~~~~iIfVvDssd~~~l~e~~~~L~ 105 (175)
T PF00025_consen 55 -----------------------YKGYSLTIWDLGGQESFRPLWK------SYFQNADGIIFVVDSSDPERLQEAKEELK 105 (175)
T ss_dssp -----------------------ETTEEEEEEEESSSGGGGGGGG------GGHTTESEEEEEEETTGGGGHHHHHHHHH
T ss_pred -----------------------eCcEEEEEEeccccccccccce------eeccccceeEEEEecccceeecccccchh
Confidence 1346789999999998888888 77889999999999999999999988999
Q ss_pred HHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 168 CLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+++......++|+++++||+|+.+....+++...+..... ...+.+.++.|||++|+|+.+.++||.+.
T Consensus 106 ~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l-----------~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 106 ELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKL-----------KNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp HHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGT-----------TSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhc-----------ccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 9988777789999999999999988888888888775541 12456899999999999999999999986
Q ss_pred c
Q psy871 248 I 248 (249)
Q Consensus 248 i 248 (249)
|
T Consensus 175 ~ 175 (175)
T PF00025_consen 175 I 175 (175)
T ss_dssp H
T ss_pred C
Confidence 5
No 10
>KOG0094|consensus
Probab=99.97 E-value=2.1e-29 Score=179.30 Aligned_cols=168 Identities=23% Similarity=0.234 Sum_probs=144.3
Q ss_pred cccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871 13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL 91 (249)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~ 91 (249)
+..|.+.+..||+++|..++|||||++|++...+. .+.+|+|.+...-.
T Consensus 14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt------------------------------ 63 (221)
T KOG0094|consen 14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKT------------------------------ 63 (221)
T ss_pred cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEE------------------------------
Confidence 45577788899999999999999999999998887 67788886655542
Q ss_pred ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
.++++....+.+|||+|+|+|..+.. ++++.+.++|.|+|.++..+|.+...|+....+
T Consensus 64 ---------------~~l~d~~vrLQlWDTAGQERFrslip------sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~ 122 (221)
T KOG0094|consen 64 ---------------MYLEDRTVRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRR 122 (221)
T ss_pred ---------------EEEcCcEEEEEEEecccHHHHhhhhh------hhccCCeEEEEEEeccccchHHHHHHHHHHHHh
Confidence 23455567899999999999999999 999999999999999999999999999999988
Q ss_pred ccCCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 172 DESLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.+..+.-+++|+||.||.+ +...++-+...+.++ ..++++||+.|+|+.++|..++..+
T Consensus 123 e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~-----------------a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 123 ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN-----------------AEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-----------------cEEEEecccCCCCHHHHHHHHHHhc
Confidence 87666678899999999987 566677777777766 7999999999999999999887654
No 11
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=9.8e-29 Score=180.26 Aligned_cols=158 Identities=27% Similarity=0.422 Sum_probs=120.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
.||+++|.+|||||||++++..+++....||.+.....+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~----------------------------------------- 39 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----------------------------------------- 39 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEE-----------------------------------------
Confidence 389999999999999999997766654455554322111
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
...+..+.+||++|++++...+. .++..+|++++|+|++++.++.....++.+++......+.|++
T Consensus 40 --------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (159)
T cd04150 40 --------EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL 105 (159)
T ss_pred --------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE
Confidence 11245689999999988877776 6778999999999999999999888888887665444579999
Q ss_pred EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+++||+|+.+....+++...+.... ...+.+.++++||++|+|++++|++|.+
T Consensus 106 lv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 106 VFANKQDLPNAMSAAEVTDKLGLHS------------LRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEECCCCCCCCCHHHHHHHhCccc------------cCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999999976555555544442211 1223467899999999999999999975
No 12
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2e-28 Score=181.19 Aligned_cols=166 Identities=33% Similarity=0.464 Sum_probs=126.0
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
-....+++++|+++|++|||||||+++|.+..+....||.+.....+
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~--------------------------------- 53 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTL--------------------------------- 53 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEE---------------------------------
Confidence 34556788999999999999999999998765444444433211111
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
.+ ....+.+||+||++.+...+. .++..+|++++|+|++++.++.....++..++...
T Consensus 54 --------------~~--~~~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (173)
T cd04154 54 --------------EY--EGYKLNIWDVGGQKTLRPYWR------NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE 111 (173)
T ss_pred --------------EE--CCEEEEEEECCCCHHHHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence 01 135689999999988776655 55778999999999999999988877888776554
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
...+.|+++|+||+|+.+....+++.+.++... .....++++++||++|.|++++++++.+
T Consensus 112 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 112 RLAGATLLILANKQDLPGALSEEEIREALELDK------------ISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred hhcCCCEEEEEECcccccCCCHHHHHHHhCccc------------cCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 456899999999999987666677776665432 1223478999999999999999999875
No 13
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=4e-28 Score=179.69 Aligned_cols=162 Identities=28% Similarity=0.455 Sum_probs=123.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++.++|+++|++|+|||||+++++.+.+....||.+.....+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 54 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEI-------------------------------------- 54 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEE--------------------------------------
Confidence 457899999999999999999998776654444444322111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+..+.+||+||++.+...+. .++..+|++++|+|++++.++.....++.+++......++
T Consensus 55 -----------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~ 117 (174)
T cd04153 55 -----------VYKNIRFLMWDIGGQESLRSSWN------TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKA 117 (174)
T ss_pred -----------EECCeEEEEEECCCCHHHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 11245789999999988877766 5678899999999999999998887788887765445679
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
|+++++||+|+......+++.+.+.... .....+++++|||++|.|+++++++|.++
T Consensus 118 p~viv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~SA~~g~gi~e~~~~l~~~ 174 (174)
T cd04153 118 VLLVLANKQDLKGAMTPAEISESLGLTS------------IRDHTWHIQGCCALTGEGLPEGLDWIASR 174 (174)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEecccCCCCCHHHHHHHHhcC
Confidence 9999999999977656666655544211 11233689999999999999999999763
No 14
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=3.5e-28 Score=179.54 Aligned_cols=159 Identities=19% Similarity=0.279 Sum_probs=121.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
..||+++|.+|+|||||++++..+.+. ...||.+......
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~--------------------------------------- 42 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQ--------------------------------------- 42 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEE---------------------------------------
Confidence 469999999999999999999988775 3445543111100
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
..+.+....+.+||++|++++...+. .++..+|++++|+|++++.+|..+..|+..+.......++|
T Consensus 43 -------~~~~~~~~~l~i~Dt~G~~~~~~l~~------~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p 109 (172)
T cd04141 43 -------ARIDNEPALLDILDTAGQAEFTAMRD------QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP 109 (172)
T ss_pred -------EEECCEEEEEEEEeCCCchhhHHHhH------HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC
Confidence 01123345688999999998888777 66788999999999999999999886655554332335799
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.+ ....++..++.+... +++++|||++|.|++++|++|.+.+
T Consensus 110 iilvgNK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 110 LVLVGNKVDLESQRQVTTEEGRNLAREFN-----------------CPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EEEEEEChhhhhcCccCHHHHHHHHHHhC-----------------CEEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999999865 345556666665544 7899999999999999999998753
No 15
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=4.4e-28 Score=178.66 Aligned_cols=160 Identities=33% Similarity=0.479 Sum_probs=123.4
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
||+++|++|||||||+++|.+..+..+.||++.....+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~------------------------------------------ 38 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETV------------------------------------------ 38 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEE------------------------------------------
Confidence 68999999999999999998876655555554222111
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
...+..+.+||+||++++...+. .++..+|++++|+|++++.++..+..++.++++.....+.|+++
T Consensus 39 -------~~~~~~i~l~Dt~G~~~~~~~~~------~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piil 105 (169)
T cd04158 39 -------EYKNLKFTIWDVGGKHKLRPLWK------HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLI 105 (169)
T ss_pred -------EECCEEEEEEECCCChhcchHHH------HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEE
Confidence 11245789999999987776665 56688999999999999999999888888887654445689999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+||+|+.+....+++.++++.... ...+.+.+++|||++|.|++++|+||.+.+
T Consensus 106 v~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 106 FANKQDVAGALSVEEMTELLSLHKL-----------CCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred EEeCcCcccCCCHHHHHHHhCCccc-----------cCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 9999999877677777776643220 011236789999999999999999998754
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=5.1e-28 Score=180.42 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=124.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...||+++|.+|+|||||+.++..+.+.. ..|+.+......
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~-------------------------------------- 46 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTT-------------------------------------- 46 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEE--------------------------------------
Confidence 45799999999999999999998876542 223332211110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+.+....+.+||++|++++...+. .+++.+|++++|+|++++.+|..+..|+.++... ..+.
T Consensus 47 -------~i~~~~~~~~l~iwDt~G~~~~~~l~~------~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~ 111 (189)
T cd04121 47 -------TILLDGRRVKLQLWDTSGQGRFCTIFR------SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGV 111 (189)
T ss_pred -------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCC
Confidence 011123345789999999999988777 6678999999999999999999999888888543 2589
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.. ....++.+++++... +++++|||++|.|++++|++|.+.+
T Consensus 112 piilVGNK~DL~~~~~v~~~~~~~~a~~~~-----------------~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 112 PKILVGNRLHLAFKRQVATEQAQAYAERNG-----------------MTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred CEEEEEECccchhccCCCHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999965 556777888777655 7899999999999999999998754
No 17
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=3.4e-28 Score=178.49 Aligned_cols=159 Identities=17% Similarity=0.237 Sum_probs=121.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.||+++|.+|||||||++++..+.+. .+.||.+.....
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 40 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK---------------------------------------- 40 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE----------------------------------------
Confidence 469999999999999999999876543 223333211100
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+|||||++++...+. .++..+|++++|+|.++..+|..+..++..+.......+.|
T Consensus 41 ------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (164)
T cd04175 41 ------QVEVDGQQCMLEILDTAGTEQFTAMRD------LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP 108 (164)
T ss_pred ------EEEECCEEEEEEEEECCCcccchhHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 011223345678999999999988888 67788999999999999999999888888887654456899
Q ss_pred EEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+... ...++..++.+... ++++++||++|.|+++++.++.+++
T Consensus 109 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 109 MILVGNKCDLEDERVVGKEQGQNLARQWG-----------------CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEEEEECCcchhccEEcHHHHHHHHHHhC-----------------CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999753 33444555555444 7899999999999999999999876
No 18
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=6.4e-28 Score=180.94 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=123.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.++++||+++|.+|+|||||++++.++.+. ...||.+.....
T Consensus 2 ~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~------------------------------------- 44 (189)
T PTZ00369 2 ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK------------------------------------- 44 (189)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-------------------------------------
Confidence 467899999999999999999999987664 333443311100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+++....+.+|||+|++++...+. .+++.+|++++|+|++++++|..+..|+..+.+.....
T Consensus 45 ---------~~~~~~~~~~l~i~Dt~G~~~~~~l~~------~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~ 109 (189)
T PTZ00369 45 ---------QCVIDEETCLLDILDTAGQEEYSAMRD------QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKD 109 (189)
T ss_pred ---------EEEECCEEEEEEEEeCCCCccchhhHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 011223345678999999999888877 56788999999999999999999988888776544445
Q ss_pred CCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+. ...++...+.+... .+++++||++|.|++++|.+|.+.+
T Consensus 110 ~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 110 RVPMILVGNKCDLDSERQVSTGEGQELAKSFG-----------------IPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHhC-----------------CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 8999999999998653 34445555554433 6899999999999999999998764
No 19
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=8e-28 Score=176.05 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=120.7
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.||+++|++|||||||++++.++.+. ...||.+.....
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 40 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK---------------------------------------- 40 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEE----------------------------------------
Confidence 368999999999999999999987654 233333211000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||++|++++...+. .+++.++++++|+|.++..++..+..++..+.+.....+.|
T Consensus 41 ------~~~~~~~~~~~~i~Dt~G~~~~~~l~~------~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (162)
T cd04138 41 ------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP 108 (162)
T ss_pred ------EEEECCEEEEEEEEECCCCcchHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 011122234577899999998888777 67788999999999999999998887877776554446899
Q ss_pred EEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 180 VLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 180 ~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
+++|+||+|+.+ .....+..+..+... .+++++||++|.|+++++++|.+.++
T Consensus 109 iivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (162)
T cd04138 109 MVLVGNKCDLAARTVSSRQGQDLAKSYG-----------------IPYIETSAKTRQGVEEAFYTLVREIR 162 (162)
T ss_pred EEEEEECcccccceecHHHHHHHHHHhC-----------------CeEEEecCCCCCCHHHHHHHHHHHhC
Confidence 999999999975 334455555555444 68999999999999999999998764
No 20
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=7.1e-28 Score=176.59 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=118.8
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
++||+++|++|||||||++++..+.+. ...||.+.....
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 40 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK---------------------------------------- 40 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEE----------------------------------------
Confidence 369999999999999999999877654 223333210000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||++|++++...+. .+++.+|++++|+|++++.++..+..++..+.......+.|
T Consensus 41 ------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (163)
T cd04136 41 ------QIEVDGQQCMLEILDTAGTEQFTAMRD------LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP 108 (163)
T ss_pred ------EEEECCEEEEEEEEECCCccccchHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 011123345678999999999888777 56788999999999999999998888887776544446799
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.+ ....++..++.+... .+++++||++|.|++++++++.+.+
T Consensus 109 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 109 MVLVGNKCDLEDERVVSREEGQALARQWG-----------------CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEEEECccccccceecHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999999965 223344444444333 7899999999999999999998865
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=7.5e-28 Score=180.68 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=118.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
|+..||+++|..|+|||||+.++..+.+. .+.||++......
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~------------------------------------- 43 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQ------------------------------------- 43 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEE-------------------------------------
Confidence 45689999999999999999999988774 4455554211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~ 176 (249)
..+.+....+.+|||+|++++...+. .++..+|++++|+|++++.+|..+.. |+..+... ..
T Consensus 44 ---------~~~~~~~~~l~i~Dt~G~e~~~~l~~------~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~ 106 (191)
T cd01875 44 ---------TAVDGRTVSLNLWDTAGQEEYDRLRT------LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CP 106 (191)
T ss_pred ---------EEECCEEEEEEEEECCCchhhhhhhh------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence 01223345689999999999998877 67889999999999999999999864 55555332 25
Q ss_pred CCcEEEEEecCCCCCCC--------------CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 177 SCPVLILGNKIDKHGAA--------------SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
+.|+++|+||+|+.+.. ..++..++.+... .+++++|||++|+|++++|.
T Consensus 107 ~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~----------------~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 107 NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH----------------AVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC----------------CcEEEEeCCCCCCCHHHHHH
Confidence 79999999999996531 2223333333222 25899999999999999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
+|.+.+
T Consensus 171 ~l~~~~ 176 (191)
T cd01875 171 EAVRAV 176 (191)
T ss_pred HHHHHH
Confidence 998754
No 22
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=1.3e-27 Score=179.86 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=120.3
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
.|+++|..|||||||++++..+.+.. +.||++......
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~----------------------------------------- 40 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIK----------------------------------------- 40 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEE-----------------------------------------
Confidence 68999999999999999999887753 344544222111
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
...+.+....+.+||++|++++...+. .+++.+|++++|+|++++.+|..+..|+..+. .....+.|++
T Consensus 41 ----~i~~~~~~v~l~iwDtaGqe~~~~l~~------~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~-~~~~~~~pii 109 (202)
T cd04120 41 ----TVELRGKKIRLQIWDTAGQERFNSITS------AYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAELL 109 (202)
T ss_pred ----EEEECCEEEEEEEEeCCCchhhHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH-HhCCCCCcEE
Confidence 011123346789999999999988887 77889999999999999999999987776553 3334679999
Q ss_pred EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+||+|+.. +...++..++.+... .+.+++|||++|.|++++|++|.+.+
T Consensus 110 lVgNK~DL~~~~~v~~~~~~~~a~~~~----------------~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 110 LVGNKLDCETDREISRQQGEKFAQQIT----------------GMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EEEECcccccccccCHHHHHHHHHhcC----------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999964 444555555554431 26899999999999999999998754
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=1.2e-27 Score=176.58 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=122.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|.+|+|||||+.++..+.+. .+.||++......
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~---------------------------------------- 41 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN---------------------------------------- 41 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEE----------------------------------------
Confidence 48999999999999999999988876 4566664222100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 179 (249)
..+.+....+.+|||+|++++...+. .++..+|++++|+|.+++.+|..+ ..|+.++.... .+.|
T Consensus 42 ------~~~~~~~v~l~i~Dt~G~~~~~~~~~------~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~p 107 (176)
T cd04133 42 ------VSVDGNTVNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVP 107 (176)
T ss_pred ------EEECCEEEEEEEEECCCCccccccch------hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCC
Confidence 11223346789999999999998887 678899999999999999999997 56777764432 5799
Q ss_pred EEEEEecCCCCCC------------CCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccchHHHHHHHhh
Q psy871 180 VLILGNKIDKHGA------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 180 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+++|+||+|+.++ ...++..++.+... . ++++|||++|.|++++|..+.+
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----------------~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 108 IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG-----------------AAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC-----------------CCEEEECCCCcccCHHHHHHHHHH
Confidence 9999999999653 45666666666544 4 6999999999999999999987
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
.+
T Consensus 171 ~~ 172 (176)
T cd04133 171 VV 172 (176)
T ss_pred HH
Confidence 53
No 24
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=1.9e-27 Score=177.20 Aligned_cols=171 Identities=20% Similarity=0.236 Sum_probs=125.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...||+++|++|+|||||++++....+. ...||++...... .+.+.. ..+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~-~~~--------------------- 53 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREK-------RVVYNS-SGP--------------------- 53 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEE-------EEEEcC-ccc---------------------
Confidence 3479999999999999999999987765 3445554332221 111111 110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+ ........+.+||++|++++..... .+++.+|++++|+|++++++|..+..|+..+.......+.
T Consensus 54 ~~~------~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (180)
T cd04127 54 GGT------LGRGQRIHLQLWDTAGQERFRSLTT------AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENP 121 (180)
T ss_pred ccc------ccCCCEEEEEEEeCCChHHHHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 0112235688999999998887776 6678899999999999999999998888887654334578
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+ ....++..++.+... .+++++||++|.|+++++++|.+.+
T Consensus 122 piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 122 DIVLCGNKADLEDQRQVSEEQAKALADKYG-----------------IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred cEEEEEeCccchhcCccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999965 345566777666654 6899999999999999999998743
No 25
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.5e-27 Score=177.01 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=122.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+.++||+++|.+|+|||||++++..+.+. .+.||++......
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~------------------------------------- 45 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS------------------------------------- 45 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEE-------------------------------------
Confidence 45779999999999999999999988765 3455554211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~ 176 (249)
..+.+....+.+|||+|++++...+. .++..+|++++|+|++++.+|..+ ..|+.++... ..
T Consensus 46 ---------~~~~~~~~~l~iwDtaG~e~~~~~~~------~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~--~~ 108 (182)
T cd04172 46 ---------FEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CP 108 (182)
T ss_pred ---------EEECCEEEEEEEEECCCchhhHhhhh------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CC
Confidence 11123345789999999999988877 678899999999999999999997 6677666443 25
Q ss_pred CCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHH
Q psy871 177 SCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGF 241 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~ 241 (249)
+.|+++|+||+|+.+ .+..++..++++..+ ..++++|||++|+| ++++|
T Consensus 109 ~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~----------------~~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 109 NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDIF 172 (182)
T ss_pred CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC----------------CCEEEECCcCCCCCCHHHHH
Confidence 799999999999853 256677777777655 13899999999998 99999
Q ss_pred HHHhh
Q psy871 242 RWLAN 246 (249)
Q Consensus 242 ~~l~~ 246 (249)
..+.+
T Consensus 173 ~~~~~ 177 (182)
T cd04172 173 HVATL 177 (182)
T ss_pred HHHHH
Confidence 98876
No 26
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=3e-27 Score=172.40 Aligned_cols=157 Identities=31% Similarity=0.494 Sum_probs=115.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
||+++|++++|||||+++|..+.+....||++.....
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~------------------------------------------- 37 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET------------------------------------------- 37 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE-------------------------------------------
Confidence 6899999999999999999766554333333221111
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
+...+..+.+||+||++.+...+. .+++.+|++++|+|++++.++.....++..++......+.|+++
T Consensus 38 ------~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piii 105 (158)
T cd04151 38 ------VTYKNLKFQVWDLGGQTSIRPYWR------CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLV 105 (158)
T ss_pred ------EEECCEEEEEEECCCCHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEE
Confidence 112245689999999988877666 66788999999999999988877666776665544445799999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
|+||+|+.+.....++.+.+.... ......+++++||++|.|+++++++|.+
T Consensus 106 v~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 106 FANKQDMPGALSEAEISEKLGLSE------------LKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEeCCCCCCCCCHHHHHHHhCccc------------cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 999999976555555544432211 1112368999999999999999999976
No 27
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=3.1e-27 Score=173.73 Aligned_cols=158 Identities=21% Similarity=0.241 Sum_probs=120.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|+|||||++++..+.+.. ..||.+......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------- 42 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR---------------------------------------- 42 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEE----------------------------------------
Confidence 589999999999999999998876653 223333221111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+||+||++++..... .+++.+|++++|+|++++.+|..+..|+..+... ...+.|+
T Consensus 43 -----~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 110 (166)
T cd04122 43 -----IIEVNGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVI 110 (166)
T ss_pred -----EEEECCEEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 001123345688999999998887776 6678899999999999999999998888776432 2357899
Q ss_pred EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+..+ ...++..++++... .++++|||++|.|++++|.++++.+
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 111 FLIGNKADLEAQRDVTYEEAKQFADENG-----------------LLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEEECcccccccCcCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999653 44566666666544 7899999999999999999998754
No 28
>KOG0078|consensus
Probab=99.96 E-value=1.2e-27 Score=173.43 Aligned_cols=161 Identities=23% Similarity=0.255 Sum_probs=133.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
....||+++|.++||||+++.++..+.+. ....|++.+...-.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kt------------------------------------ 53 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKT------------------------------------ 53 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEE------------------------------------
Confidence 34579999999999999999999998887 44456654433321
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..+++....+.+|||.|+++|..+.. .+|+.++.+++|+|+++..+|.++..|+..+- +.....
T Consensus 54 ---------i~l~g~~i~lQiWDtaGQerf~ti~~------sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~-e~a~~~ 117 (207)
T KOG0078|consen 54 ---------IELDGKKIKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDITNEKSFENIRNWIKNID-EHASDD 117 (207)
T ss_pred ---------EEeCCeEEEEEEEEcccchhHHHHHH------HHHhhcCeeEEEEEccchHHHHHHHHHHHHHH-hhCCCC
Confidence 11122456799999999999999999 89999999999999999999999998777764 334458
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|.++|+||+|+.. .++.+..++++...+ ++++++|||+|.|+++.|..|++.+
T Consensus 118 v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-----------------~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 118 VVKILVGNKCDLEEKRQVSKERGEALAREYG-----------------IKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred CcEEEeeccccccccccccHHHHHHHHHHhC-----------------CeEEEccccCCCCHHHHHHHHHHHH
Confidence 99999999999977 778888999888887 8999999999999999999998754
No 29
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=2.3e-27 Score=173.96 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=119.6
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
++||+++|.+|+|||||++++..+.+.. ..||.+.. ...
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~--------------------------------------- 40 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDF-YRK--------------------------------------- 40 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhhe-EEE---------------------------------------
Confidence 4689999999999999999998876652 23333200 000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||++|++++...+. .++..+|++++|+|++++.+|..+..++..+.......++|
T Consensus 41 ------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 108 (163)
T cd04176 41 ------EIEVDSSPSVLEILDTAGTEQFASMRD------LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP 108 (163)
T ss_pred ------EEEECCEEEEEEEEECCCcccccchHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 011122334578999999999988877 56788999999999999999999888887776544446899
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
+++|+||+|+.. .....+.....+... .+++++||++|.|+++++.++.+.++
T Consensus 109 iviv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd04176 109 IILVGNKVDLESEREVSSAEGRALAEEWG-----------------CPFMETSAKSKTMVNELFAEIVRQMN 163 (163)
T ss_pred EEEEEECccchhcCccCHHHHHHHHHHhC-----------------CEEEEecCCCCCCHHHHHHHHHHhcC
Confidence 999999999865 223334444444333 68999999999999999999998874
No 30
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=2.9e-27 Score=173.55 Aligned_cols=160 Identities=21% Similarity=0.235 Sum_probs=119.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
..||+++|++|+|||||++++.+..+. ...||.+.....
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 41 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTK---------------------------------------- 41 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEE----------------------------------------
Confidence 469999999999999999999876543 222222211000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+|||||++++..... .++..+|++++|+|++++.++..+..++..+.......+.|
T Consensus 42 ------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 109 (164)
T cd04145 42 ------QCEIDGQWAILDILDTAGQEEFSAMRE------QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP 109 (164)
T ss_pred ------EEEECCEEEEEEEEECCCCcchhHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 011223345688999999998887776 56678999999999999999999888888876654446899
Q ss_pred EEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 180 VLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 180 ~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
+++++||+|+... ...++..++.+... .+++++||++|.|++++|++|.+.++
T Consensus 110 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 110 MILVGNKADLEHQRKVSREEGQELARKLK-----------------IPYIETSAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred EEEEeeCccccccceecHHHHHHHHHHcC-----------------CcEEEeeCCCCCCHHHHHHHHHHhhC
Confidence 9999999999653 23445555555433 68999999999999999999998764
No 31
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.4e-27 Score=178.74 Aligned_cols=160 Identities=21% Similarity=0.172 Sum_probs=122.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||+++|.++.+. .+.||++.......
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~--------------------------------------- 41 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKV--------------------------------------- 41 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEE---------------------------------------
Confidence 48999999999999999999987765 34455543211110
Q ss_pred ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc---CCC
Q psy871 101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE---SLA 176 (249)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~ 176 (249)
..+. +....+.+||++|++++...+. .++..+|++++|+|++++.+|..+..|+..+.... ...
T Consensus 42 ------v~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~ 109 (201)
T cd04107 42 ------IEWDPNTVVRLQLWDIAGQERFGGMTR------VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGE 109 (201)
T ss_pred ------EEECCCCEEEEEEEECCCchhhhhhHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCC
Confidence 0011 2345688999999998887777 67789999999999999999999887777664321 235
Q ss_pred CCcEEEEEecCCCC--CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKH--GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+. .....+++.++.+... ..+++++||++|.|++++|++|.+.+
T Consensus 110 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 110 PIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----------------FIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCcEEEEEECCCcccccccCHHHHHHHHHHcC----------------CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 78999999999997 4566777777776543 15799999999999999999998764
No 32
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=2.8e-27 Score=173.62 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=118.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||++++.+..+.. ..||.... .
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~---~---------------------------------------- 37 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS---Y---------------------------------------- 37 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh---E----------------------------------------
Confidence 489999999999999999998776542 22222100 0
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
. ......+....+.+||+||++++...+. .+++.+|++++|+|++++.++..+..+...+.+.....+.|+
T Consensus 38 -~--~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 108 (164)
T smart00173 38 -R--KQIEIDGEVCLLDILDTAGQEEFSAMRD------QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108 (164)
T ss_pred -E--EEEEECCEEEEEEEEECCCcccchHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 0 0011223345688999999998887777 567789999999999999999988877777765544467999
Q ss_pred EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+..+ ...++..+..+... .+++++||++|.|+++++++|.+.+
T Consensus 109 i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 109 VLVGNKCDLESERVVSTEEGKELARQWG-----------------CPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred EEEEECccccccceEcHHHHHHHHHHcC-----------------CEEEEeecCCCCCHHHHHHHHHHHH
Confidence 999999999653 34455555555443 7899999999999999999998765
No 33
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=7e-27 Score=174.34 Aligned_cols=168 Identities=29% Similarity=0.367 Sum_probs=124.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+..||+++|++|||||||++++....+....||.+.......+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~------------------------------------- 44 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKV------------------------------------- 44 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEe-------------------------------------
Confidence 3679999999999999999999887766555665533332210
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
.........+.+|||+|++++...+. .++..+|++++|+|++++.++.....++.++.......++|
T Consensus 45 -------~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p 111 (183)
T cd04152 45 -------SLGNSKGITFHFWDVGGQEKLRPLWK------SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP 111 (183)
T ss_pred -------eccCCCceEEEEEECCCcHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 00012345689999999988877666 56788999999999999988888777777776544446799
Q ss_pred EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+......+++...+..... ......+++++||++|+|+++++++|.+.+
T Consensus 112 ~iiv~NK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 112 VLVLANKQDLPNALSVSEVEKLLALHEL-----------SASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred EEEEEECcCccccCCHHHHHHHhCcccc-----------CCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 9999999999776566666655542110 011236789999999999999999998765
No 34
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=3e-27 Score=173.66 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=116.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||++++....+. ...||.+.......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~--------------------------------------- 41 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLD--------------------------------------- 41 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEE---------------------------------------
Confidence 48999999999999999999876654 33444443222220
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
.........+.+|||+|++.+..... ..+..+|++++|+|++++.++..+..|+..+.... .++|+
T Consensus 42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~pi 107 (166)
T cd00877 42 ------FHTNRGKIRFNVWDTAGQEKFGGLRD------GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPI 107 (166)
T ss_pred ------EEECCEEEEEEEEECCCChhhccccH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcE
Confidence 00112235688999999988877666 55678999999999999999999888888876542 38999
Q ss_pred EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.+.....+..++.+.. ..+++++||++|.|++++|++|.+.+
T Consensus 108 iiv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 108 VLCGNKVDIKDRKVKAKQITFHRKK-----------------NLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EEEEEchhcccccCCHHHHHHHHHc-----------------CCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9999999997543333333333322 27899999999999999999998754
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=5.3e-27 Score=172.70 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=120.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||+++|++.++. .+.||.+.......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------- 41 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKK--------------------------------------- 41 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEE---------------------------------------
Confidence 48999999999999999999987764 34444443222110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC----C
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL----A 176 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~----~ 176 (249)
....+....+.+|||+|++.+...+. ..+..+|++++|+|.+++.++..+..|+.++...... .
T Consensus 42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 109 (168)
T cd04119 42 ------VSVRNKEVRVNFFDLSGHPEYLEVRN------EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNME 109 (168)
T ss_pred ------EEECCeEEEEEEEECCccHHHHHHHH------HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCC
Confidence 01123345788999999988877666 5568899999999999999999988888887654332 5
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+ ....++...+.+... .+++++||++|.|+++++++|.+.+
T Consensus 110 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 110 NIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-----------------FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CceEEEEEEchhcccccccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999973 334555555555433 6899999999999999999998754
No 36
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=5.6e-27 Score=171.34 Aligned_cols=159 Identities=33% Similarity=0.484 Sum_probs=119.1
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
+|+++|++|||||||++++.+.++....||.+.....+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~----------------------------------------- 39 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQ----------------------------------------- 39 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEE-----------------------------------------
Confidence 589999999999999999998876554555442222110
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
......+.+||++|++.+...+. .++..+|++++|+|++++.++.....++.+++......+.|+++
T Consensus 40 -------~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piil 106 (160)
T cd04156 40 -------LEKHLSLTVWDVGGQEKMRTVWK------CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVL 106 (160)
T ss_pred -------eCCceEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEE
Confidence 01235689999999987776665 55678999999999999998888888888887655446899999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
|+||+|+......+++...++.... .....+++++|||++|+|+++++++|.+
T Consensus 107 v~nK~Dl~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 107 LANKQDLPGALTAEEITRRFKLKKY-----------CSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEECcccccCcCHHHHHHHcCCccc-----------CCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999999765556666554432110 0113368999999999999999999975
No 37
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=6.1e-27 Score=171.44 Aligned_cols=158 Identities=29% Similarity=0.466 Sum_probs=116.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCCC--CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRL--AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+|+++|++|||||||+++|++... ....||++.....
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----------------------------------------- 39 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----------------------------------------- 39 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-----------------------------------------
Confidence 589999999999999999987642 2333444321111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCCC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LASC 178 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 178 (249)
+...+..+.+||+||++++...+. .++..+|++++|+|++++.++.....++..++.... ..++
T Consensus 40 --------~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (162)
T cd04157 40 --------FEKGNLSFTAFDMSGQGKYRGLWE------HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRV 105 (162)
T ss_pred --------EEECCEEEEEEECCCCHhhHHHHH------HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCC
Confidence 112345689999999998887776 567889999999999999988877777777755322 2479
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
|+++|+||+|+.++...+++.+.++... .....++++++||++|.|+++++++|.++
T Consensus 106 p~iiv~NK~Dl~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 106 PILFFANKMDLPDALTAVKITQLLGLEN------------IKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred CEEEEEeCccccCCCCHHHHHHHhCCcc------------ccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 9999999999987655555555443221 11123679999999999999999999753
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=3.6e-27 Score=180.37 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=121.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+.++||+++|.+|||||||+++++.+.+. .+.||++.......
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~------------------------------------ 54 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD------------------------------------ 54 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEE------------------------------------
Confidence 56789999999999999999999877765 45566554333221
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.........+.+||++|++++...+. .++..+|++++|+|.+++.+|..+..|+..+... ..+
T Consensus 55 ---------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~ 117 (219)
T PLN03071 55 ---------FFTNCGKIRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 117 (219)
T ss_pred ---------EEECCeEEEEEEEECCCchhhhhhhH------HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCC
Confidence 00112235788999999999887776 5678999999999999999999998888887643 357
Q ss_pred CcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+... ...+++ ++.+.. .+++++|||++|.|++++|.+|.+.+
T Consensus 118 ~piilvgNK~Dl~~~~v~~~~~-~~~~~~-----------------~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 118 IPIVLCGNKVDVKNRQVKAKQV-TFHRKK-----------------NLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred CcEEEEEEchhhhhccCCHHHH-HHHHhc-----------------CCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999653 233333 333322 27899999999999999999998764
No 39
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=4.8e-27 Score=176.32 Aligned_cols=157 Identities=21% Similarity=0.229 Sum_probs=117.5
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
||+++|.+|||||||+++|+.+.+.. +.||.+......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~----------------------------------------- 39 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQ----------------------------------------- 39 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEE-----------------------------------------
Confidence 68999999999999999998876652 333332111000
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCCCc
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LASCP 179 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p 179 (249)
..+.+....+.+|||+|++++...+. .++..+|++++|+|+++..+|..+..++..+..... ..+.|
T Consensus 40 -----~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 108 (190)
T cd04144 40 -----VVVDGQPCMLEVLDTAGQEEYTALRD------QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP 108 (190)
T ss_pred -----EEECCEEEEEEEEECCCchhhHHHHH------HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 11223345688999999998888777 677899999999999999999998888777654322 25789
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.. ....++...+.+... ++++++||++|.|++++++++.+.+
T Consensus 109 iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 109 IMIVGNKCDKVYEREVSTEEGAALARRLG-----------------CEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred EEEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999999964 334445555554444 6899999999999999999998764
No 40
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6.9e-27 Score=178.78 Aligned_cols=157 Identities=21% Similarity=0.188 Sum_probs=121.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...||+++|++|+|||||++++..+.+. .+.||++......
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~-------------------------------------- 53 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAG-------------------------------------- 53 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEE--------------------------------------
Confidence 3579999999999999999999988766 4455553221100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~ 177 (249)
..+.+....+.+|||+|+++|..... .++..+|++++|+|++++.+|..+ ..|+.++... ..+
T Consensus 54 --------i~~~~~~v~l~iwDTaG~e~~~~~~~------~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~ 117 (232)
T cd04174 54 --------LETEEQRVELSLWDTSGSPYYDNVRP------LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPS 117 (232)
T ss_pred --------EEECCEEEEEEEEeCCCchhhHHHHH------HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHh--CCC
Confidence 01123345689999999999988877 678899999999999999999974 6677776543 257
Q ss_pred CcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeecccc-chHHHH
Q psy871 178 CPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQ-GYGDGF 241 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-gv~~l~ 241 (249)
.|+++|+||+|+.+ .+..++..++++..+ . .+++|||++|+ |++++|
T Consensus 118 ~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~-----------------~~~~~EtSAktg~~~V~e~F 180 (232)
T cd04174 118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG-----------------AEVYLECSAFTSEKSIHSIF 180 (232)
T ss_pred CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC-----------------CCEEEEccCCcCCcCHHHHH
Confidence 89999999999853 356677777777765 5 69999999998 899999
Q ss_pred HHHhhh
Q psy871 242 RWLANY 247 (249)
Q Consensus 242 ~~l~~~ 247 (249)
..+++.
T Consensus 181 ~~~~~~ 186 (232)
T cd04174 181 RSASLL 186 (232)
T ss_pred HHHHHH
Confidence 998764
No 41
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=1e-26 Score=171.18 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=121.4
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.+||+++|++|+|||||++++.+..+.. ..||.+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~--------------------------------------- 43 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIR--------------------------------------- 43 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEE---------------------------------------
Confidence 4799999999999999999999877652 344443221111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||++|++.+..... ..++.+|++++|+|++++.+|..+..|+..+... ...+.|
T Consensus 44 ------~~~~~~~~~~l~l~D~~g~~~~~~~~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p 110 (167)
T cd01867 44 ------TIELDGKKIKLQIWDTAGQERFRTITT------AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVE 110 (167)
T ss_pred ------EEEECCEEEEEEEEeCCchHHHHHHHH------HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCc
Confidence 001122335688999999988877665 5668899999999999999999988888777543 235789
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.+ +...++..+..+... .+++++||++|.|++++|+++.+++
T Consensus 111 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 111 RMLVGNKCDMEEKRVVSKEEGEALADEYG-----------------IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999975 345566666666544 6899999999999999999998865
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=1.1e-26 Score=170.55 Aligned_cols=158 Identities=24% Similarity=0.270 Sum_probs=119.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||+++|.+..+. ...||.+.......
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------- 42 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT--------------------------------------- 42 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEE---------------------------------------
Confidence 58999999999999999999988765 23444432111110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
....+....+.+||++|++++...+. ..++.+|++++|+|++++.++..+..|+..+... .....|+
T Consensus 43 ------~~~~~~~~~~~l~Dt~g~~~~~~~~~------~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~pi 109 (165)
T cd01865 43 ------VFRNDKRVKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQV 109 (165)
T ss_pred ------EEECCEEEEEEEEECCChHHHHHHHH------HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCE
Confidence 00112235688999999988877766 6678999999999999999999988888776433 2357899
Q ss_pred EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.+. ...++..+..+... ++++++||++|.|+++++++|.+.+
T Consensus 110 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 110 ILVGNKCDMEDERVVSSERGRQLADQLG-----------------FEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999653 33455555555444 6899999999999999999998765
No 43
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=9.1e-27 Score=177.15 Aligned_cols=168 Identities=22% Similarity=0.238 Sum_probs=121.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
.||+++|.+|+|||||++++..+.+....||++......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~----------------------------------------- 39 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK----------------------------------------- 39 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEE-----------------------------------------
Confidence 489999999999999999999888765555554322111
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
......+.+||++|++.+..... .++..+|++++|+|++++.+|..+..++..+... ...+.|++
T Consensus 40 --------~~~~~~l~iwDt~G~e~~~~l~~------~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piI 104 (220)
T cd04126 40 --------QWGPYNISIWDTAGREQFHGLGS------MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFA 104 (220)
T ss_pred --------EeeEEEEEEEeCCCcccchhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEE
Confidence 00123588999999998888777 5678999999999999999999998888777643 33579999
Q ss_pred EEEecCCCCC---------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 182 ILGNKIDKHG---------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 182 vv~nK~Dl~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
+|+||+|+.+ .+..++..++.+.......-. .+.+ .....++++|||++|.|++++
T Consensus 105 lVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~-~~~~--~~~~~~~~E~SA~tg~~V~el 181 (220)
T cd04126 105 VVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD-EDLS--PAAEKMCFETSAKTGYNVDEL 181 (220)
T ss_pred EEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc-cccc--ccccceEEEeeCCCCCCHHHH
Confidence 9999999864 334566666665533000000 0000 011268999999999999999
Q ss_pred HHHHhhhc
Q psy871 241 FRWLANYI 248 (249)
Q Consensus 241 ~~~l~~~i 248 (249)
|..+.+.+
T Consensus 182 f~~i~~~~ 189 (220)
T cd04126 182 FEYLFNLV 189 (220)
T ss_pred HHHHHHHH
Confidence 99998753
No 44
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=1.1e-26 Score=171.87 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=114.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.||+++|.+|+|||||+.++..+.+. .+.||.+......
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~--------------------------------------- 41 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN--------------------------------------- 41 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE---------------------------------------
Confidence 358999999999999999999987764 3445543111000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASC 178 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 178 (249)
..+.+....+.+|||+|++.+...+. .++..+|++++|+|++++++|..+.. |+..+... ..+.
T Consensus 42 -------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~ 106 (174)
T cd01871 42 -------VMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNT 106 (174)
T ss_pred -------EEECCEEEEEEEEECCCchhhhhhhh------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCC
Confidence 11223345688999999998887776 56788999999999999999999864 55555332 2579
Q ss_pred cEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 179 PVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 179 p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
|+++|+||+|+.+. ...++..++.+..+ ..++++|||++|+|++++|+.+
T Consensus 107 piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 107 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred CEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC----------------CcEEEEecccccCCHHHHHHHH
Confidence 99999999999642 22333333333332 2589999999999999999999
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+.+
T Consensus 171 ~~~~ 174 (174)
T cd01871 171 IRAV 174 (174)
T ss_pred HHhC
Confidence 8753
No 45
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.7e-26 Score=168.38 Aligned_cols=158 Identities=34% Similarity=0.518 Sum_probs=122.5
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
||+++|++|||||||++++++.......+|.+.....+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~------------------------------------------ 38 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV------------------------------------------ 38 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE------------------------------------------
Confidence 68999999999999999999877554444444322222
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
......+.+||+||++.+..... ..+..+|++++|+|+++++++.....++..+.......+.|+++
T Consensus 39 -------~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piii 105 (158)
T cd00878 39 -------EYKNVSFTVWDVGGQDKIRPLWK------HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLI 105 (158)
T ss_pred -------EECCEEEEEEECCCChhhHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEE
Confidence 11145799999999988877666 56678999999999999999988887888877655457899999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++||+|+......+++.+.+.... .....++++++||++|.|+++++++|.++
T Consensus 106 v~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 106 FANKQDLPGALSVSELIEKLGLEK------------ILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred EeeccCCccccCHHHHHHhhChhh------------ccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 999999987666666666655431 12234789999999999999999999753
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=1.1e-26 Score=170.66 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=114.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||+++++++.+. .+.||.+......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~---------------------------------------- 41 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV---------------------------------------- 41 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEE----------------------------------------
Confidence 58999999999999999999987764 2334333111000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc--CCCCC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE--SLASC 178 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~ 178 (249)
.........+.+||++|++++..... ..+..+|++++|+|++++.++..+..++..+.... ...+.
T Consensus 42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (165)
T cd04140 42 ------ISCSKNICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI 109 (165)
T ss_pred ------EEECCEEEEEEEEECCCCCcchHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 01122235688999999998877665 55678999999999999999988877765553321 12579
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
|+++|+||+|+.. ....++......... +++++|||++|.|++++|++|.+.
T Consensus 110 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 110 PIMLVGNKCDESHKREVSSNEGAACATEWN-----------------CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CEEEEEECccccccCeecHHHHHHHHHHhC-----------------CcEEEeecCCCCCHHHHHHHHHhc
Confidence 9999999999965 333444444444333 689999999999999999999753
No 47
>KOG0077|consensus
Probab=99.95 E-value=2.2e-27 Score=164.40 Aligned_cols=192 Identities=52% Similarity=0.817 Sum_probs=159.7
Q ss_pred hHhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH
Q psy871 3 QIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82 (249)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl 82 (249)
-+|+||.+++.++|+++++-|++++|--|||||||+++|.+++.....||..++.+.+ ..
T Consensus 2 fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l----~I---------------- 61 (193)
T KOG0077|consen 2 FLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL----SI---------------- 61 (193)
T ss_pred cHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHh----ee----------------
Confidence 4899999999999999999999999999999999999999999999999999888887 22
Q ss_pred HHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh
Q psy871 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162 (249)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~ 162 (249)
....+..+|..|+......+. .++..+|++++++|+.+...|.+.
T Consensus 62 -----------------------------g~m~ftt~DLGGH~qArr~wk------dyf~~v~~iv~lvda~d~er~~es 106 (193)
T KOG0077|consen 62 -----------------------------GGMTFTTFDLGGHLQARRVWK------DYFPQVDAIVYLVDAYDQERFAES 106 (193)
T ss_pred -----------------------------cCceEEEEccccHHHHHHHHH------HHHhhhceeEeeeehhhHHHhHHH
Confidence 233466777888766666666 667778888888888888888777
Q ss_pred HHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
+..+..++......+.|+++.+||+|.+.....+++...+...+...............+...+|.||...+.|.-+.+.
T Consensus 107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fk 186 (193)
T KOG0077|consen 107 KKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
T ss_pred HHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeee
Confidence 77888888777778999999999999999888888887777766555555555556667889999999999999999999
Q ss_pred HHhhhcC
Q psy871 243 WLANYID 249 (249)
Q Consensus 243 ~l~~~i~ 249 (249)
|+.+.|+
T Consensus 187 wl~qyi~ 193 (193)
T KOG0077|consen 187 WLSQYIK 193 (193)
T ss_pred ehhhhcC
Confidence 9988764
No 48
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=8.5e-27 Score=172.71 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=118.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|+|||||++++..+.+. .+.||++.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~----------------------------------------- 40 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTA----------------------------------------- 40 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEE-----------------------------------------
Confidence 58999999999999999999988765 344554311100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+|||+|++.+..... .++..+|++++|+|++++.+|..+ ..|+..+... ..+.|
T Consensus 41 -----~~~~~~~~~~l~iwDt~G~~~~~~~~~------~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~--~~~~~ 107 (178)
T cd04131 41 -----SFEIDEQRIELSLWDTSGSPYYDNVRP------LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF--CPNTK 107 (178)
T ss_pred -----EEEECCEEEEEEEEECCCchhhhhcch------hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH--CCCCC
Confidence 001123345689999999998887777 678899999999999999999985 6677666443 25799
Q ss_pred EEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHH
Q psy871 180 VLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWL 244 (249)
Q Consensus 180 ~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l 244 (249)
+++|+||+|+.+ .+..++..++.+..+ ..++++|||++|+| ++++|..+
T Consensus 108 iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~----------------~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 108 VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG----------------AEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC----------------CCEEEECccCcCCcCHHHHHHHH
Confidence 999999999853 245566777666654 13799999999995 99999988
Q ss_pred hh
Q psy871 245 AN 246 (249)
Q Consensus 245 ~~ 246 (249)
.+
T Consensus 172 ~~ 173 (178)
T cd04131 172 TM 173 (178)
T ss_pred HH
Confidence 76
No 49
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=1.9e-26 Score=168.64 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=119.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.+|+++|++|+|||||++++..+++. .+.||++......
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------- 40 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMK---------------------------------------- 40 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence 37999999999999999999988765 3345544322111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+||++|.+++..... .++..+|++++|+|++++.+|..+..|+.++... ...+.|+
T Consensus 41 -----~~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~i 108 (161)
T cd04117 41 -----TIEVDGIKVRIQIWDTAGQERYQTITK------QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQK 108 (161)
T ss_pred -----EEEECCEEEEEEEEeCCCcHhHHhhHH------HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 011122235688999999988887766 5678899999999999999999998888777543 2357999
Q ss_pred EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++|+||+|+... ...++.....+... .++++|||++|.|++++|.+|.+.
T Consensus 109 ilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 109 ILIGNKADEEQKRQVGDEQGNKLAKEYG-----------------MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999999653 34566666665544 689999999999999999999875
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=1.7e-26 Score=169.75 Aligned_cols=159 Identities=24% Similarity=0.252 Sum_probs=119.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.+||+++|++|+|||||++++.+..+. ...||.+......
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~--------------------------------------- 42 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR--------------------------------------- 42 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE---------------------------------------
Confidence 369999999999999999999887664 2333433211111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||+||++++..... ..++.+|++++|+|++++++|..+..|+..+... ...+.|
T Consensus 43 ------~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~ 109 (166)
T cd01869 43 ------TIELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVN 109 (166)
T ss_pred ------EEEECCEEEEEEEEECCCcHhHHHHHH------HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCc
Confidence 011122335688999999998877776 5668899999999999999999988887776443 235789
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++++||+|+.. ....++..++.+... ++++++||++|.|+++++.++.+.+
T Consensus 110 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 110 KLLVGNKCDLTDKRVVDYSEAQEFADELG-----------------IPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEEEEECCCCcCHHHHHHHHHHHH
Confidence 999999999865 344566666666544 7899999999999999999998865
No 51
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2e-26 Score=169.38 Aligned_cols=160 Identities=31% Similarity=0.405 Sum_probs=121.4
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
.|+++|++|||||||++++++.....+.||++.....+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~------------------------------------------ 38 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKL------------------------------------------ 38 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEE------------------------------------------
Confidence 48999999999999999998763334455554322211
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
...+..+.+||++|++.+...+. .++..+|++++|+|++++.++.....++..++......++|+++
T Consensus 39 -------~~~~~~~~i~D~~G~~~~~~~~~------~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 39 -------RLDKYEVCIFDLGGGANFRGIWV------NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred -------EECCEEEEEEECCCcHHHHHHHH------HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 11245688999999988777666 67789999999999999999998888888887665556899999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc------cchHHHHHHHhh
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR------QGYGDGFRWLAN 246 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g------~gv~~l~~~l~~ 246 (249)
|+||+|+.+.....++.+.+..-.. .......+.+++|||++| .|+++.|+||..
T Consensus 106 v~NK~Dl~~~~~~~~i~~~~~l~~~---------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 106 LANKQDKKNALLGADVIEYLSLEKL---------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeCCCCcCCCCHHHHHHhcCcccc---------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 9999999887667777665542220 001123478999999998 899999999975
No 52
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=1.6e-26 Score=170.32 Aligned_cols=158 Identities=22% Similarity=0.213 Sum_probs=119.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
||+++|++|||||||++++..+.+. .+.||++.......
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~---------------------------------------- 41 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMER---------------------------------------- 41 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEE----------------------------------------
Confidence 7999999999999999999988775 44555553321110
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
..+.+....+.+||++|++++...+. .+++.+|++++|+|++++.++..+..|+.++.+.......|++
T Consensus 42 -----~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii 110 (170)
T cd04108 42 -----FEILGVPFSLQLWDTAGQERFKCIAS------TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110 (170)
T ss_pred -----EEECCEEEEEEEEeCCChHHHHhhHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 01122335688999999999888777 6678999999999999999999988888887655333457899
Q ss_pred EEEecCCCCCCCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+||+|+..... .++..++.+... .+++++||++|.|++++|+.|.+.+
T Consensus 111 lVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 111 LVGTKKDLSSPAQYALMEQDAIKLAAEMQ-----------------AEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EEEEChhcCccccccccHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999865321 233344444333 6799999999999999999998754
No 53
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.6e-26 Score=170.11 Aligned_cols=119 Identities=34% Similarity=0.477 Sum_probs=94.8
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+.+||+||++.+..... ..+..+|++++|+|++++.++.....++..+++.....++|+++++||+|+...
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWD------KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred CEEEEEEECCCChhhHHHHH------HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 56789999999988877666 567889999999999999888887778887776554568999999999999877
Q ss_pred CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
...++..+.++.... ......++++++||++|+|++++++||.++
T Consensus 123 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 123 LSVEEIKEVFQDKAE----------EIGRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred CCHHHHHHHhccccc----------cccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 666677666654321 012234789999999999999999999763
No 54
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.1e-26 Score=175.21 Aligned_cols=161 Identities=21% Similarity=0.282 Sum_probs=122.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.+||+++|++|+|||||+++|++..+.. ..||++...... .+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~-------~i------------------------------ 44 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSR-------LI------------------------------ 44 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEE-------EE------------------------------
Confidence 4799999999999999999999877653 234433211111 00
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
....+....+.+||++|++.+..... .+++.+|++++|+|++++.+|..+..|+.++.........|
T Consensus 45 -------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~ 111 (211)
T cd04111 45 -------EIEPGVRIKLQLWDTAGQERFRSITR------SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV 111 (211)
T ss_pred -------EECCCCEEEEEEEeCCcchhHHHHHH------HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 00012234688999999998877766 66788999999999999999999988888886554445678
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.. ....++..++.+... ++++++||++|.|++++|++|.+.+
T Consensus 112 iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 112 FILVGHKCDLESQRQVTREEAEKLAKDLG-----------------MKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred EEEEEEccccccccccCHHHHHHHHHHhC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999965 345566666666544 7899999999999999999998754
No 55
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.95 E-value=3e-26 Score=169.66 Aligned_cols=169 Identities=28% Similarity=0.435 Sum_probs=124.3
Q ss_pred hcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871 12 LGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL 91 (249)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~ 91 (249)
++...-..+.++|+++|++|||||||++++.+..+....||.+.....+
T Consensus 5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i------------------------------- 53 (173)
T cd04155 5 LRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTV------------------------------- 53 (173)
T ss_pred HHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEE-------------------------------
Confidence 3444555678999999999999999999998875554444443222111
Q ss_pred ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
......+.+||++|+..+..... ..++.+|++++|+|+++..++.....++..++.
T Consensus 54 ------------------~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~ 109 (173)
T cd04155 54 ------------------QSDGFKLNVWDIGGQRAIRPYWR------NYFENTDCLIYVIDSADKKRLEEAGAELVELLE 109 (173)
T ss_pred ------------------EECCEEEEEEECCCCHHHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11134688999999877765555 456789999999999998888877777777765
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.....++|+++++||+|+.+....+++.+.++... ...+.++++++||++|+|++++++||++.
T Consensus 110 ~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 110 EEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD------------LRDRTWHIQACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred ChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcc------------cCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence 54446799999999999977655666655444322 22334678999999999999999999763
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.2e-26 Score=168.21 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=118.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..+||+++|++|||||||++++..+.+.. ..+|.+......
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 43 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMK-------------------------------------- 43 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEE--------------------------------------
Confidence 35799999999999999999998766542 223332211111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+.+....+.+||+||++.+..... ..+..+|++++|+|++++.++..+..|+..+... ...+.
T Consensus 44 -------~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~~~~~ 109 (165)
T cd01864 44 -------TLEIEGKRVKLQIWDTAGQERFRTITQ------SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY-GASNV 109 (165)
T ss_pred -------EEEECCEEEEEEEEECCChHHHHHHHH------HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCC
Confidence 011122235688999999988877666 5567899999999999999999988888877543 23579
Q ss_pred cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+. ...++..+..+... ...++++||++|.|++++++++.+.+
T Consensus 110 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 110 VLLLIGNKCDLEEQREVLFEEACTLAEKNG----------------MLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred cEEEEEECcccccccccCHHHHHHHHHHcC----------------CcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 99999999999753 34455555555433 25789999999999999999998764
No 57
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=2.9e-26 Score=175.25 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=119.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||+++|.+..+. .+.||.+...... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~-------~-------------------------------- 41 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSK-------R-------------------------------- 41 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEE-------E--------------------------------
Confidence 48999999999999999999987665 3444544322111 0
Q ss_pred ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCC
Q psy871 101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LAS 177 (249)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~ 177 (249)
..++ .....+.+||++|++.+..... .+++.+|++++|+|++++.+|..+..|+..+..... ...
T Consensus 42 ------i~~~~~~~~~~~i~Dt~G~~~~~~l~~------~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~ 109 (215)
T cd04109 42 ------VTLPGNLNVTLQVWDIGGQSIGGKMLD------KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQ 109 (215)
T ss_pred ------EEeCCCCEEEEEEEECCCcHHHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCC
Confidence 0011 1235689999999988877776 567899999999999999999998877777654322 135
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+..+ .+++++||++|.|++++|++|.+.+
T Consensus 110 ~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-----------------~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 110 PLVVLVGNKTDLEHNRTVKDDKHARFAQANG-----------------MESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ceEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999964 344556666665544 6899999999999999999998764
No 58
>KOG0080|consensus
Probab=99.95 E-value=5.1e-27 Score=161.70 Aligned_cols=161 Identities=22% Similarity=0.223 Sum_probs=136.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCC-CCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT-LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
-.+||+++|.+|+|||||+-++..+.+....|+ ++.+...-.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~------------------------------------- 52 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKV------------------------------------- 52 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEE-------------------------------------
Confidence 357999999999999999999998888755554 664444331
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+.+.+..+-+|||+|+++|..+.. ++|+.+..+|+|+|++..++|..+..|++++-....++++
T Consensus 53 --------m~vdg~~~KlaiWDTAGqErFRtLTp------SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~di 118 (209)
T KOG0080|consen 53 --------MQVDGKRLKLAIWDTAGQERFRTLTP------SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDI 118 (209)
T ss_pred --------EEEcCceEEEEEEeccchHhhhccCH------hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccH
Confidence 12345567799999999999999999 9999999999999999999999999899998666666788
Q ss_pred cEEEEEecCCCC--CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKH--GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
-.++|+||+|.. +.+++++-..+++... .-+++|||++.+|+...|+.|...|
T Consensus 119 ikmlVgNKiDkes~R~V~reEG~kfAr~h~-----------------~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 119 IKMLVGNKIDKESERVVDREEGLKFARKHR-----------------CLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred hHhhhcccccchhcccccHHHHHHHHHhhC-----------------cEEEEcchhhhccHHHHHHHHHHHH
Confidence 889999999987 4678899999999877 7899999999999999999998765
No 59
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=2.2e-26 Score=170.36 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=114.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|.+|+|||||++++..+.+. .+.||++......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~---------------------------------------- 41 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT---------------------------------------- 41 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEE----------------------------------------
Confidence 58999999999999999999988774 4556654211100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p 179 (249)
..+.+....+.+||++|++++...+. .++..+|++++|+|++++++|..+.. |+..+... ..+.|
T Consensus 42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~p 107 (175)
T cd01874 42 ------VMIGGEPYTLGLFDTAGQEDYDRLRP------LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTP 107 (175)
T ss_pred ------EEECCEEEEEEEEECCCccchhhhhh------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 01123345688999999998887776 57788999999999999999998864 55555332 25799
Q ss_pred EEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 180 VLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 180 ~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
+++|+||+|+.+. ...++..++.+.. +.+.+++|||++|.|++++|+.+.
T Consensus 108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~----------------~~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL----------------KAVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh----------------CCcEEEEecCCCCCCHHHHHHHHH
Confidence 9999999998643 1122222222222 236899999999999999999987
Q ss_pred hh
Q psy871 246 NY 247 (249)
Q Consensus 246 ~~ 247 (249)
+.
T Consensus 172 ~~ 173 (175)
T cd01874 172 LA 173 (175)
T ss_pred HH
Confidence 64
No 60
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.1e-26 Score=171.41 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=118.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+||+++|++|||||||++++.+.++. ...+|.+......
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~--------------------------------------- 41 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNK--------------------------------------- 41 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEE---------------------------------------
Confidence 48999999999999999999887764 2333333221110
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||+||++++..... ..+..+|++++|+|+++++++..+..|+..+... ...+.|
T Consensus 42 ------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~p 108 (191)
T cd04112 42 ------VVTVDGVKVKLQIWDTAGQERFRSVTH------AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVV 108 (191)
T ss_pred ------EEEECCEEEEEEEEeCCCcHHHHHhhH------HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCc
Confidence 001122345688999999988877666 5567899999999999999999888777776543 335789
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.. ....++...+.+... .+++++||++|.|+++++.+|.+.+
T Consensus 109 iiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-----------------~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 109 IMLLGNKADMSGERVVKREDGERLAKEYG-----------------VPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EEEEEEcccchhccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999963 344556666555444 6899999999999999999998754
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=4.4e-26 Score=167.46 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=119.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||++++.+..+. ...||.+.......
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------- 44 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRS--------------------------------------- 44 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEE---------------------------------------
Confidence 59999999999999999999987755 33444443222110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
....+....+.+||+||++.+..... .+++.++++++|+|++++.++..+..|+..+... ...+.|+
T Consensus 45 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi 111 (165)
T cd01868 45 ------IQIDGKTIKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKKQTFENVERWLKELRDH-ADSNIVI 111 (165)
T ss_pred ------EEECCEEEEEEEEeCCChHHHHHHHH------HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 01112234588999999988877766 5667899999999999999999988888776543 2346899
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.. ....++...+.+... ++++++||++|.|++++++++.+.+
T Consensus 112 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 112 MLVGNKSDLRHLRAVPTEEAKAFAEKNG-----------------LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEECccccccccCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999965 334556666555433 7899999999999999999998765
No 62
>KOG0394|consensus
Probab=99.95 E-value=3.7e-27 Score=166.21 Aligned_cols=160 Identities=24% Similarity=0.275 Sum_probs=128.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
..||.++|.+|+|||||+|++....+. .+..|++...-..+
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKe-------------------------------------- 50 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKE-------------------------------------- 50 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeE--------------------------------------
Confidence 369999999999999999999988776 44555553333321
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC---
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA--- 176 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (249)
..+......+.+|||+|+++|+++.. ..|+.+|+.++|+|++++.+|+.+..|-.+++......
T Consensus 51 -------v~Vd~~~vtlQiWDTAGQERFqsLg~------aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe 117 (210)
T KOG0394|consen 51 -------VQVDDRSVTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPE 117 (210)
T ss_pred -------EEEcCeEEEEEEEecccHHHhhhccc------ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCC
Confidence 12233345688999999999999987 88899999999999999999999999999998765432
Q ss_pred CCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 177 SCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
..|+|+++||+|+.. .++.+.+.++++.-+ .+|||++|||.+.||++.|+.+.+.
T Consensus 118 ~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g----------------nipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 118 TFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG----------------NIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred cccEEEEcccccCCCCccceeeHHHHHHHHHhcC----------------CceeEEecccccccHHHHHHHHHHH
Confidence 489999999999955 456677777777544 4999999999999999999988764
No 63
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=4.3e-26 Score=172.33 Aligned_cols=159 Identities=22% Similarity=0.270 Sum_probs=120.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++|+++|++|||||||++++.+..+. .+.||.+......
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 46 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR-------------------------------------- 46 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEE--------------------------------------
Confidence 3679999999999999999999887765 3344443222111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
.....+....+.+||+||++.+...+. .++..++++++|+|++++.+|..+..|+..+... ....
T Consensus 47 -------~~~~~~~~~~l~l~D~~G~~~~~~~~~------~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~ 111 (199)
T cd04110 47 -------TVEINGERVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDV 111 (199)
T ss_pred -------EEEECCEEEEEEEEeCCCchhHHHHHH------HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCC
Confidence 001122234588999999988877776 6678899999999999999999988888877543 2578
Q ss_pred cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+... ...++..++.+... .+++++||++|.|++++|++|.+.+
T Consensus 112 piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 112 CKVLVGNKNDDPERKVVETEDAYKFAGQMG-----------------ISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred CEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEECCCCcCHHHHHHHHHHHH
Confidence 99999999999753 34455666665544 7899999999999999999998753
No 64
>KOG0075|consensus
Probab=99.95 E-value=6.9e-27 Score=158.65 Aligned_cols=179 Identities=28% Similarity=0.391 Sum_probs=155.6
Q ss_pred CchHhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCch
Q psy871 1 MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk 79 (249)
|...|++.-.|+ +-.|+..+..+.++|..+||||||+|....+++. ...||.+.....+
T Consensus 1 m~~~~~k~L~wi-~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~------------------- 60 (186)
T KOG0075|consen 1 MCAKLRKKLVWI-CNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV------------------- 60 (186)
T ss_pred ChhHHHHHHHHH-HHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe-------------------
Confidence 567788777777 4568999999999999999999999999887665 5667777666655
Q ss_pred hHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh
Q psy871 80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF 159 (249)
Q Consensus 80 ssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~ 159 (249)
......+.+||.+|+.+|.+.++ .+...+++++||+|+++++.+
T Consensus 61 ------------------------------tkgnvtiklwD~gGq~rfrsmWe------rycR~v~aivY~VDaad~~k~ 104 (186)
T KOG0075|consen 61 ------------------------------TKGNVTIKLWDLGGQPRFRSMWE------RYCRGVSAIVYVVDAADPDKL 104 (186)
T ss_pred ------------------------------ccCceEEEEEecCCCccHHHHHH------HHhhcCcEEEEEeecCCcccc
Confidence 23345688999999999999999 888999999999999999999
Q ss_pred HhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 160 EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
...+++++.++..+...++|+++++||.|+..+....++-..+.... ...+.+.+|.+|++...|++.
T Consensus 105 ~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~s------------itdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 105 EASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSS------------ITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred hhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccc------------cccceEEEEEEEEcCCccHHH
Confidence 99999999999998889999999999999999888888877777655 556779999999999999999
Q ss_pred HHHHHhhh
Q psy871 240 GFRWLANY 247 (249)
Q Consensus 240 l~~~l~~~ 247 (249)
+.+||.++
T Consensus 173 ~~~Wli~h 180 (186)
T KOG0075|consen 173 TLDWLIEH 180 (186)
T ss_pred HHHHHHHH
Confidence 99999886
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=6.5e-26 Score=166.99 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=119.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||++++++..+... .+|.+.......
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------- 45 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--------------------------------------- 45 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE---------------------------------------
Confidence 6999999999999999999988766532 233332221110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
.........+.+||++|++++..... ..++.+|++++|+|++++.++..+..|+.++... ...+.|+
T Consensus 46 ------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pv 112 (168)
T cd01866 46 ------ITIDGKQIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SNSNMTI 112 (168)
T ss_pred ------EEECCEEEEEEEEECCCcHHHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcE
Confidence 01112234688999999988877766 5667899999999999999999988888777543 2367999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.+ ....++..++.+... ++++++||+++.|++++|.++.+.+
T Consensus 113 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 113 MLIGNKCDLESRREVSYEEGEAFAKEHG-----------------LIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999974 345566666665544 7899999999999999999998764
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=3.3e-26 Score=171.56 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=113.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||++++..+.+.. +.||++.....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~----------------------------------------- 39 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH----------------------------------------- 39 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-----------------------------------------
Confidence 489999999999999999999877652 33443211100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 179 (249)
.....+....+.+||++|++.+...+. .++..+|++++|+|++++.+|..+. .|+..+... ..+.|
T Consensus 40 -----~i~~~~~~~~l~i~Dt~G~~~~~~l~~------~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~p 106 (189)
T cd04134 40 -----DIFVDGLHIELSLWDTAGQEEFDRLRS------LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVK 106 (189)
T ss_pred -----EEEECCEEEEEEEEECCCChhcccccc------ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 011123345688999999998877766 5678899999999999999998876 466666432 25799
Q ss_pred EEEEEecCCCCCCCCH--------------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 180 VLILGNKIDKHGAASE--------------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
+++|+||+|+.+.... ++..++.+.. +.+++++|||++|.|++++|.+|.
T Consensus 107 iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~e~SAk~~~~v~e~f~~l~ 170 (189)
T cd04134 107 LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI----------------NALRYLECSAKLNRGVNEAFTEAA 170 (189)
T ss_pred EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc----------------CCCEEEEccCCcCCCHHHHHHHHH
Confidence 9999999999764222 1222222221 226899999999999999999998
Q ss_pred hhc
Q psy871 246 NYI 248 (249)
Q Consensus 246 ~~i 248 (249)
+.+
T Consensus 171 ~~~ 173 (189)
T cd04134 171 RVA 173 (189)
T ss_pred HHH
Confidence 753
No 67
>KOG0098|consensus
Probab=99.95 E-value=1.8e-26 Score=163.03 Aligned_cols=158 Identities=21% Similarity=0.201 Sum_probs=133.2
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
-.|+.++|..|+|||+|+.+++...|. ....|++...+.-
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r--------------------------------------- 46 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGAR--------------------------------------- 46 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeecee---------------------------------------
Confidence 358999999999999999999998877 3444555333322
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+++....+.+|||+|++.|.++.. ++|+.+...++|+|+++.++|.++..|+..+... ...+..
T Consensus 47 ------~~~id~k~IKlqiwDtaGqe~frsv~~------syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~-~~~Nmv 113 (216)
T KOG0098|consen 47 ------MVTIDGKQIKLQIWDTAGQESFRSVTR------SYYRGAAGALLVYDITRRESFNHLTSWLEDARQH-SNENMV 113 (216)
T ss_pred ------EEEEcCceEEEEEEecCCcHHHHHHHH------HHhccCcceEEEEEccchhhHHHHHHHHHHHHHh-cCCCcE
Confidence 123445566799999999999999999 9999999999999999999999999999998654 357899
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+++++||+||.. +++.++.+.+++... ..++++||++++|+++.|......
T Consensus 114 ImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-----------------LifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 114 IMLIGNKSDLEARREVSKEEGEAFAREHG-----------------LIFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred EEEEcchhhhhccccccHHHHHHHHHHcC-----------------ceeehhhhhhhhhHHHHHHHHHHH
Confidence 999999999955 788999999999877 889999999999999999877654
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=4.6e-26 Score=166.82 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=118.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|+|||||+++++++.+. ...||++...... .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~-------~-------------------------------- 41 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEK-------Q-------------------------------- 41 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEE-------E--------------------------------
Confidence 38999999999999999999987654 2233333211100 0
Q ss_pred ceeceecccc--ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 101 TRRVWKDYFP--AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 101 ~~~~~~~~~~--~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+. +....+.+||+||++++..... .+++.+|++++|+|++++.++..+..|+..+... ..+.
T Consensus 42 ------~~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~ 107 (162)
T cd04106 42 ------IFLRQSDEDVRLMLWDTAGQEEFDAITK------AYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDI 107 (162)
T ss_pred ------EEEcCCCCEEEEEEeeCCchHHHHHhHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCC
Confidence 0011 2245689999999998887776 6678999999999999999999888787776432 3579
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
|+++|+||+|+.. ....++...+.+..+ ++++++||++|.|+++++++|.+.
T Consensus 108 p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 108 PMVLVQTKIDLLDQAVITNEEAEALAKRLQ-----------------LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999965 344566666666555 689999999999999999999864
No 69
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=9.6e-26 Score=164.97 Aligned_cols=159 Identities=23% Similarity=0.269 Sum_probs=120.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||+++|++..+.. ..|+.+.......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 41 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKT--------------------------------------- 41 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEE---------------------------------------
Confidence 489999999999999999998776542 3344332221110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+......+.+||+||++.+..... ..++.+|++++|+|.+++.++..+..++..+.......+.|+
T Consensus 42 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (161)
T cd01863 42 ------LTVDGKKVKLAIWDTAGQERFRTLTS------SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK 109 (161)
T ss_pred ------EEECCEEEEEEEEECCCchhhhhhhH------HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE
Confidence 00122335689999999888776665 456789999999999999999988887777765545578999
Q ss_pred EEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.. ....++..++.+... ++++++||++|.|++++++.+.+.+
T Consensus 110 ~iv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 110 MLVGNKIDKENREVTREEGLKFARKHN-----------------MLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred EEEEECCcccccccCHHHHHHHHHHcC-----------------CEEEEEecCCCCCHHHHHHHHHHhC
Confidence 99999999974 445566666666544 7899999999999999999998764
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=8.6e-26 Score=165.54 Aligned_cols=159 Identities=21% Similarity=0.258 Sum_probs=121.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.||+++|++|||||||+++|.+.++.. ..||.+.......
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-------------------------------------- 42 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQT-------------------------------------- 42 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--------------------------------------
Confidence 4699999999999999999999887653 4444432221110
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
..+...+..+.+||+||++++..... ..++.+|++++|+|++++.++.....++..+.... ..+.|
T Consensus 43 -------v~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ 108 (163)
T cd01860 43 -------VNLDDTTVKFEIWDTAGQERYRSLAP------MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNII 108 (163)
T ss_pred -------EEECCEEEEEEEEeCCchHHHHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCe
Confidence 01122345688999999988877666 45678999999999999999998888888776543 26799
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++++||+|+.. ....++.....+... ++++++||++|.|+++++++|.+.|
T Consensus 109 iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 109 IALVGNKADLESKRQVSTEEAQEYADENG-----------------LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECccccccCcCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999999874 334556666555443 7899999999999999999998875
No 71
>KOG0073|consensus
Probab=99.94 E-value=5.2e-26 Score=157.34 Aligned_cols=171 Identities=31% Similarity=0.425 Sum_probs=144.5
Q ss_pred hcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871 12 LGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL 91 (249)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~ 91 (249)
++-.+...++.+|.++|..||||||++++|.+.......||.+....++.
T Consensus 7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~------------------------------ 56 (185)
T KOG0073|consen 7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLE------------------------------ 56 (185)
T ss_pred HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEE------------------------------
Confidence 34445556799999999999999999999998887777778777666662
Q ss_pred ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
..+..+.+||..|+..+.+.+. +|++..|++|+|+|++++-.+++....+.+++.
T Consensus 57 -------------------~~~~~L~iwDvGGq~~lr~~W~------nYfestdglIwvvDssD~~r~~e~~~~L~~lL~ 111 (185)
T KOG0073|consen 57 -------------------YKGYTLNIWDVGGQKTLRSYWK------NYFESTDGLIWVVDSSDRMRMQECKQELTELLV 111 (185)
T ss_pred -------------------ecceEEEEEEcCCcchhHHHHH------HhhhccCeEEEEEECchHHHHHHHHHHHHHHHh
Confidence 2356799999999999999999 899999999999999999999998889999998
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+....+.|+++++||.|+......+++...+..... ....+++++.|||.+|+++.+.++||...+
T Consensus 112 eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l-----------~ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 112 EERLAGAPLLVLANKQDLPGALSLEEISKALDLEEL-----------AKSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHh-----------ccccCceEEEEeccccccHHHHHHHHHHHH
Confidence 888889999999999999987788888766654431 133569999999999999999999998754
No 72
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=4.7e-26 Score=166.55 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=113.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|.+|+|||||++++..+.+... .++.+......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKH---------------------------------------- 40 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEE----------------------------------------
Confidence 4899999999999999999987765421 12222111100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+|||+|++++..... .+++.+|++++|+|++++.++..+..|+..+... ..+.|+
T Consensus 41 -----~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ 107 (161)
T cd04124 41 -----NAKFEGKTILVDFWDTAGQERFQTMHA------SYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPC 107 (161)
T ss_pred -----EEEECCEEEEEEEEeCCCchhhhhhhH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcE
Confidence 011223345688999999999888777 6778999999999999999999888787777442 257999
Q ss_pred EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+... ..++..++.+... ++++++||++|.|++++++.+.+.+
T Consensus 108 ivv~nK~Dl~~~-~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 108 IVVANKIDLDPS-VTQKKFNFAEKHN-----------------LPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEECccCchh-HHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999998542 1222233322222 6899999999999999999998753
No 73
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=6.7e-26 Score=167.23 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=118.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
|.+||+++|++|+|||||+++++...+. ...+|++......
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-------------------------------------- 42 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRER-------------------------------------- 42 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEE--------------------------------------
Confidence 3579999999999999999999876654 2333332111110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||++|++++.. ... .+++.+|++++|+|++++.++..+..|+..+.......+
T Consensus 43 -------~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 109 (170)
T cd04115 43 -------TVEIDGERIKVQLWDTAGQERFRKSMVQ------HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE 109 (170)
T ss_pred -------EEEECCeEEEEEEEeCCChHHHHHhhHH------HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCC
Confidence 011123345688999999987753 344 456789999999999999999999888877765444467
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc---ccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM---RQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---g~gv~~l~~~l~~~i 248 (249)
+|+++|+||+|+.. ....++..++.+... ++++++||++ +.|++++|..|.+.+
T Consensus 110 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 110 VPRILVGNKCDLREQIQVPTDLAQRFADAHS-----------------MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCEEEEEECccchhhcCCCHHHHHHHHHHcC-----------------CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 99999999999865 334455555555433 7899999999 999999999998875
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=8.7e-26 Score=165.19 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=118.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||+++|.+..+.. ..++.+......
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSK---------------------------------------- 40 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEE----------------------------------------
Confidence 489999999999999999998876542 223332111111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+||+||++.+..... ..++.+|++++|+|++++.++..+..|+..+... ...+.|+
T Consensus 41 -----~~~~~~~~~~l~l~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 108 (161)
T cd04113 41 -----IIRVGGKRVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITNRTSFEALPTWLSDARAL-ASPNIVV 108 (161)
T ss_pred -----EEEECCEEEEEEEEECcchHHHHHhHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 001112235688999999988877666 5567899999999999999999988777766432 3368999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+|+.. ....++...+.+... ++++++||+++.|++++++++.+.+
T Consensus 109 ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 109 ILVGNKSDLADQREVTFLEASRFAQENG-----------------LLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred EEEEEchhcchhccCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 99999999965 344566666666544 7899999999999999999998764
No 75
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=5.9e-26 Score=168.90 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=116.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|.+|+|||||++++..+.+. .+.||++.......
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~--------------------------------------- 41 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKT--------------------------------------- 41 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEE---------------------------------------
Confidence 48999999999999999999988775 35666653332110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+.+....+.+||++|++++...+. .+++.+|++++|+|++++.+|..+..|+.++.... ....|
T Consensus 42 ------i~~~~~~~~l~iwDt~G~~~~~~~~~------~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p- 107 (182)
T cd04128 42 ------ISIRGTEITFSIWDLGGQREFINMLP------LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP- 107 (182)
T ss_pred ------EEECCEEEEEEEEeCCCchhHHHhhH------HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-
Confidence 01122345689999999998887776 66788999999999999999999988888775532 24566
Q ss_pred EEEEecCCCCCCCC-------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGAAS-------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+..+.. .++..++.+..+ .++++|||++|.|++++|+++.+.+
T Consensus 108 ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-----------------~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 108 ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-----------------APLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 67899999964211 122233333322 7899999999999999999998754
No 76
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=8.1e-26 Score=172.07 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=116.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+|+|.+|+|||||+++++.+.+. .+.||++......
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~---------------------------------------- 41 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTAS---------------------------------------- 41 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEE----------------------------------------
Confidence 58999999999999999999987765 4556654221100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+.+....+.+|||+|++.|...+. .++..+|++++|||++++++|..+...+...+.. ...+.|+
T Consensus 42 ------~~~~~~~v~L~iwDt~G~e~~~~l~~------~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~-~~~~~pi 108 (222)
T cd04173 42 ------FEIDKRRIELNMWDTSGSSYYDNVRP------LAYPDSDAVLICFDISRPETLDSVLKKWQGETQE-FCPNAKV 108 (222)
T ss_pred ------EEECCEEEEEEEEeCCCcHHHHHHhH------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCE
Confidence 11223345688999999999988877 6789999999999999999999985444443333 2367999
Q ss_pred EEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHHh
Q psy871 181 LILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWLA 245 (249)
Q Consensus 181 ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~ 245 (249)
++|+||+|+..+ ...++..++.+.++ ..+|++|||+++.| ++++|....
T Consensus 109 iLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~----------------~~~y~E~SAk~~~~~V~~~F~~~~ 172 (222)
T cd04173 109 VLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG----------------AVSYVECSSRSSERSVRDVFHVAT 172 (222)
T ss_pred EEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC----------------CCEEEEcCCCcCCcCHHHHHHHHH
Confidence 999999999652 23344444444443 14899999999985 999999876
Q ss_pred h
Q psy871 246 N 246 (249)
Q Consensus 246 ~ 246 (249)
+
T Consensus 173 ~ 173 (222)
T cd04173 173 V 173 (222)
T ss_pred H
Confidence 5
No 77
>KOG0079|consensus
Probab=99.94 E-value=1.7e-26 Score=157.01 Aligned_cols=155 Identities=25% Similarity=0.312 Sum_probs=129.6
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
+.+|+|++|+|||+|+.++.+..++ .+..|++.+..+-.
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirT---------------------------------------- 49 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRT---------------------------------------- 49 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEE----------------------------------------
Confidence 7889999999999999999998887 45566665544431
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
..+++....+.+||++|+++|..+.. .+++..+++++|+|+++.++|.+...|++++... ....|-+
T Consensus 50 -----v~i~G~~VkLqIwDtAGqErFrtits------tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~v 116 (198)
T KOG0079|consen 50 -----VDINGDRVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKV 116 (198)
T ss_pred -----eecCCcEEEEEEeecccHHHHHHHHH------HHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--Cccccce
Confidence 11234556799999999999999988 8889999999999999999999999999999543 4689999
Q ss_pred EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+|+||+|..+ .+..++.+++....+ +.+|++|||..+|++..|.-|.+.
T Consensus 117 LVGNK~d~~~RrvV~t~dAr~~A~~mg-----------------ie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 117 LVGNKNDDPERRVVDTEDARAFALQMG-----------------IELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ecccCCCCccceeeehHHHHHHHHhcC-----------------chheehhhhhcccchHHHHHHHHH
Confidence 9999999977 355677888888776 899999999999999999887764
No 78
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.94 E-value=1.2e-25 Score=165.90 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=121.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...||+++|++|+|||||++++.++.+.. ..++.+......
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 45 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK-------------------------------------- 45 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEE--------------------------------------
Confidence 45799999999999999999998776552 233333211110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---C
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES---L 175 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~ 175 (249)
...+.+....+.+||+||++++...+. .+++.+|++++|+|++++.++..+..|..++..... .
T Consensus 46 -------~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 112 (170)
T cd04116 46 -------DLEVDGHFVTLQIWDTAGQERFRSLRT------PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEP 112 (170)
T ss_pred -------EEEECCeEEEEEEEeCCChHHHHHhHH------HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccC
Confidence 001122345688999999998887777 667889999999999999999998878777654322 2
Q ss_pred CCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+.. ....+++.++.+... ..+++++||++|.|++++|+++.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQVSTEEAQAWCRENG----------------DYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred CCCcEEEEEECccccccccCHHHHHHHHHHCC----------------CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999964 445667777666543 25799999999999999999998764
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=1.3e-25 Score=164.20 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=117.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||+++|++..+.. ..|+.+......
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK---------------------------------------- 40 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE----------------------------------------
Confidence 489999999999999999998876652 223222211111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
.....+....+.+||+||++.+..... ..+..+|++++|+|++++.+|..+..++..+..... .+.|+
T Consensus 41 -----~~~~~~~~~~l~~~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i 108 (161)
T cd01861 41 -----TMYLEDKTVRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVII 108 (161)
T ss_pred -----EEEECCEEEEEEEEECCCcHHHHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 001122234688999999988877666 556889999999999999999998888887765432 36999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+|+.+ ....++.....+... ++++++||+++.|++++++++.+.+
T Consensus 109 ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 109 VLVGNKTDLSDKRQVSTEEGEKKAKELN-----------------AMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred EEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 99999999954 234455555555433 7899999999999999999998764
No 80
>KOG0070|consensus
Probab=99.94 E-value=1.9e-26 Score=163.78 Aligned_cols=167 Identities=31% Similarity=0.446 Sum_probs=149.8
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
..++.++.+|+++|--+|||||+++.|..+++..+.||++..++.+.+
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y-------------------------------- 58 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY-------------------------------- 58 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE--------------------------------
Confidence 456889999999999999999999999999999889999999999821
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
.+..+.+||..|++++...+. .++...+++|+|+|+++.+.+...+..+..++....
T Consensus 59 -----------------kn~~f~vWDvGGq~k~R~lW~------~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 59 -----------------KNISFTVWDVGGQEKLRPLWK------HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE 115 (181)
T ss_pred -----------------cceEEEEEecCCCcccccchh------hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence 145688999999998888888 888999999999999999999999989999998877
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....|+++.+||.|+....+..++.+.+.... ...+.+.+..|+|.+|+|+.|.++||.+.+
T Consensus 116 l~~~~llv~aNKqD~~~als~~ei~~~L~l~~------------l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGALSAAEITNKLGLHS------------LRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred cCCceEEEEechhhccccCCHHHHHhHhhhhc------------cCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 78999999999999999999999998888765 455779999999999999999999998865
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=9.1e-26 Score=164.14 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=111.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|+|||||+.++..+.+.... |+.+.....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~----------------------------------------- 39 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKE----------------------------------------- 39 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEE-----------------------------------------
Confidence 48999999999999999999877655322 211110000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+.+....+.+||++|++.. .+++.+|++++|+|++++.+|+.+..|+.++.......+.|+
T Consensus 40 ------i~~~~~~~~l~i~D~~g~~~~-----------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pi 102 (158)
T cd04103 40 ------VLVDGQSHLLLIRDEGGAPDA-----------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPL 102 (158)
T ss_pred ------EEECCEEEEEEEEECCCCCch-----------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 111233456889999998642 234679999999999999999999888888876544467999
Q ss_pred EEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.. ....++..++.+... .+++++|||++|.|++++|..+.+.+
T Consensus 103 ilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 103 ILVGTQDAISESNPRVIDDARARQLCADMK----------------RCSYYETCATYGLNVERVFQEAAQKI 158 (158)
T ss_pred EEEeeHHHhhhcCCcccCHHHHHHHHHHhC----------------CCcEEEEecCCCCCHHHHHHHHHhhC
Confidence 99999999842 344455555544321 27899999999999999999998754
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=1e-25 Score=166.01 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=118.6
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
++||+++|++|||||||++++.++.+. .+.||.+.....
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 40 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRK---------------------------------------- 40 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE----------------------------------------
Confidence 468999999999999999999877654 233333211100
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||+||++++...++ ..++.++++++|+|.+++.++.....+...+.......++|
T Consensus 41 ------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (168)
T cd04177 41 ------QVEIDGRQCDLEILDTAGTEQFTAMRE------LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP 108 (168)
T ss_pred ------EEEECCEEEEEEEEeCCCcccchhhhH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 001123345688999999999988877 56788999999999999999998887777776544446899
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++++||+|+.. ....++..+..+... ..+++++||++|.|++++|+++..++
T Consensus 109 iiiv~nK~D~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 109 MVLVGNKADLEDDRQVSREDGVSLSQQWG----------------NVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEEEEChhccccCccCHHHHHHHHHHcC----------------CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999999999965 233444444444322 26899999999999999999998754
No 83
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=1.4e-25 Score=164.44 Aligned_cols=158 Identities=21% Similarity=0.270 Sum_probs=118.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||+++++..++.. ..++.......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK----------------------------------------- 39 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-----------------------------------------
Confidence 489999999999999999998766542 22222111000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
.....+....+.+||+||++.+...+. ..++.++++++|+|.+++.++.....++..+.......++|+
T Consensus 40 -----~~~~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 108 (164)
T cd04139 40 -----KVVLDGEDVQLNILDTAGQEDYAAIRD------NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL 108 (164)
T ss_pred -----EEEECCEEEEEEEEECCChhhhhHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 011223345688999999988877766 566789999999999999999888888888776544468999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.. ....++.....+... .+++++||++|.|++++++++.+++
T Consensus 109 iiv~NK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 109 LLVGNKCDLEDKRQVSSEEAANLARQWG-----------------VPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred EEEEEccccccccccCHHHHHHHHHHhC-----------------CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999976 234455555555443 6899999999999999999998765
No 84
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=1.8e-25 Score=167.66 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=118.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||++++.+..+.. +.||.+......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------- 40 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIK---------------------------------------- 40 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence 489999999999999999999877653 444544222111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+||++|.+.+...+. ..++.+|++++|+|++++.+|..+..|+.++... .....|+
T Consensus 41 -----~~~~~~~~~~~~i~Dt~g~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ 108 (188)
T cd04125 41 -----TVYIENKIIKLQIWDTNGQERFRSLNN------SYYRGAHGYLLVYDVTDQESFENLKFWINEINRY-ARENVIK 108 (188)
T ss_pred -----EEEECCEEEEEEEEECCCcHHHHhhHH------HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 011122235688999999988877766 6678899999999999999999988887777543 2246899
Q ss_pred EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+|+.+. ...++...+.+... ++++++||++|.|++++|.+|.+.+
T Consensus 109 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 109 VIVANKSDLVNNKVVDSNIAKSFCDSLN-----------------IPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred EEEEECCCCcccccCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999753 34455555554433 6899999999999999999998754
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=170.40 Aligned_cols=162 Identities=23% Similarity=0.264 Sum_probs=118.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++||+++|++|||||||+++|++..+....||.+......
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 53 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIK-------------------------------------- 53 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEE--------------------------------------
Confidence 346799999999999999999999876654444443222111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc-cCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD-ESLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|.+++.+|..+...+...+.. .....
T Consensus 54 -------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~ 120 (211)
T PLN03118 54 -------QLTVGGKRLKLTIWDTAGQERFRTLTS------SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120 (211)
T ss_pred -------EEEECCEEEEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 011122345688999999998887776 5678899999999999999999887655443332 22346
Q ss_pred CcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+... ...++.....+... ++++++||++|.|+++++++|.+.+
T Consensus 121 ~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 121 CVKMLVGNKVDRESERDVSREEGMALAKEHG-----------------CLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred CCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999652 33455555554433 6899999999999999999998754
No 86
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=2.1e-25 Score=167.92 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=113.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+|+|.+|||||||++++.++++. .+.||.+......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~---------------------------------------- 40 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRP---------------------------------------- 40 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccccccee----------------------------------------
Confidence 48999999999999999999987765 2344443221111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhH--HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc--CCC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESK--SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE--SLA 176 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~--~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~ 176 (249)
...+.+....+.+|||||...+.... +........+..+|++++|+|++++.+|..+..++..+.... ...
T Consensus 41 -----~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~ 115 (198)
T cd04142 41 -----AVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115 (198)
T ss_pred -----EEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCC
Confidence 00112223467899999976543221 111112245688999999999999999999887777776532 236
Q ss_pred CCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 177 SCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++|+++|+||+|+... ...++...+.+.. ..+++++|||++|.|++++|+.+.+.
T Consensus 116 ~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKS----------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred CCCEEEEEECccccccccccHHHHHHHHHHh----------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 7999999999999552 2334444333221 12789999999999999999998864
No 87
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=9.2e-26 Score=169.55 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=114.8
Q ss_pred eccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceece
Q psy871 27 LGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVW 105 (249)
Q Consensus 27 vG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~ 105 (249)
+|.+|||||||+++++.+.+. .+.||++.......
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~-------------------------------------------- 36 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV-------------------------------------------- 36 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEE--------------------------------------------
Confidence 699999999999999977665 34566553333221
Q ss_pred eccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEe
Q psy871 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185 (249)
Q Consensus 106 ~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 185 (249)
..+.+....+.+||++|++++...+. .+++.+|++++|+|+++..+|..+..|+.++.+. ..++|+++|+|
T Consensus 37 -~~~~~~~~~l~iwDt~G~e~~~~l~~------~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgN 107 (200)
T smart00176 37 -FHTNRGPIRFNVWDTAGQEKFGGLRD------GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGN 107 (200)
T ss_pred -EEECCEEEEEEEEECCCchhhhhhhH------HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 11123345789999999999988887 6788999999999999999999998888877653 25799999999
Q ss_pred cCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 186 KIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 186 K~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+|+... ...+. ..+.+.. .+++++|||++|.|++++|.+|.+.+
T Consensus 108 K~Dl~~~~v~~~~-~~~~~~~-----------------~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 108 KVDVKDRKVKAKS-ITFHRKK-----------------NLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred CcccccccCCHHH-HHHHHHc-----------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9998653 22222 2333322 27899999999999999999998754
No 88
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=2.3e-25 Score=163.42 Aligned_cols=158 Identities=24% Similarity=0.277 Sum_probs=118.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||++++.+..+. ...++.+......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTK---------------------------------------- 40 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence 48999999999999999999877654 2223333221111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+||+||++.+..... ..++.+|++++|+|++++.++..+..|+..+.... ..++|+
T Consensus 41 -----~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pi 108 (164)
T smart00175 41 -----TIEVDGKRVKLQIWDTAGQERFRSITS------SYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVI 108 (164)
T ss_pred -----EEEECCEEEEEEEEECCChHHHHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 001112234688999999988887666 55678999999999999999998887777765432 257999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+|+.. +...+...++.+... ++++++||++|.|++++++++.+.+
T Consensus 109 vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 109 MLVGNKSDLEDQRQVSREEAEAFAEEHG-----------------LPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEEEEchhcccccCCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999865 335566666655443 6799999999999999999998864
No 89
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.7e-25 Score=167.73 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=114.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|+|||||+++|.++.+. ...||.+......
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~---------------------------------------- 40 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN---------------------------------------- 40 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE----------------------------------------
Confidence 48999999999999999999987764 2233322111000
Q ss_pred ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCC
Q psy871 101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASC 178 (249)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 178 (249)
.... +....+.+|||+|++++...+. .++..+|++++|+|++++.+|..+.. |+..+... ..+.
T Consensus 41 ------i~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~ 106 (187)
T cd04132 41 ------IQGPNGKIIELALWDTAGQEEYDRLRP------LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGT 106 (187)
T ss_pred ------EEecCCcEEEEEEEECCCchhHHHHHH------HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCC
Confidence 0001 2234588999999998887766 56788999999999999999988754 55544322 2579
Q ss_pred cEEEEEecCCCCCC------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGA------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+... ...++..++..... ..++++|||++|.|++++|..+.+.+
T Consensus 107 piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 107 PIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----------------AFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred CEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----------------CcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 99999999999653 23556666665544 12899999999999999999998754
No 90
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=2e-25 Score=163.45 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=127.3
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
||+++|++++|||||+++|.+..+. .+.||.+.......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------------------- 40 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKE---------------------------------------- 40 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEE----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccc----------------------------------------
Confidence 7999999999999999999988765 44455543322221
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
..+++....+.+||++|++++..... ..+..+|++++|+|.+++.+|..+..|+..+..... ...|++
T Consensus 41 -----~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~ii 108 (162)
T PF00071_consen 41 -----VSIDGKPVNLEIWDTSGQERFDSLRD------IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPII 108 (162)
T ss_dssp -----EEETTEEEEEEEEEETTSGGGHHHHH------HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEE
T ss_pred -----cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc-ccccce
Confidence 11224456799999999998887776 567889999999999999999999988888765432 469999
Q ss_pred EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++||+|+.+ ....++..++.+..+ .++++|||+++.|+.++|..+.+.+
T Consensus 109 vvg~K~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 109 VVGNKSDLSDEREVSVEEAQEFAKELG-----------------VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EEEETTTGGGGSSSCHHHHHHHHHHTT-----------------SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred eeeccccccccccchhhHHHHHHHHhC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999976 677788888888766 8999999999999999999998876
No 91
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=2.6e-25 Score=172.41 Aligned_cols=159 Identities=21% Similarity=0.271 Sum_probs=118.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|.+|+|||||++++..+++. .+.||++......
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~---------------------------------------- 40 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKL---------------------------------------- 40 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEE----------------------------------------
Confidence 48999999999999999999887765 3344443110000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-------
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE------- 173 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~------- 173 (249)
..+.+....+.+|||+|.+.+...+. .++..+|++++|||+++.++|..+..++.++....
T Consensus 41 ------~~i~~~~~~l~I~Dt~G~~~~~~~~~------~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~ 108 (247)
T cd04143 41 ------YSIRGEVYQLDILDTSGNHPFPAMRR------LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKT 108 (247)
T ss_pred ------EEECCEEEEEEEEECCCChhhhHHHH------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 01123345688999999988877665 45678999999999999999999888877775431
Q ss_pred -CCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 -SLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 -~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...++|+++|+||+|+.. ....+++.+.+... ..++++++||++|.|++++|++|.+..
T Consensus 109 ~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 109 KENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 235799999999999964 45566666655432 126899999999999999999998753
No 92
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=3.5e-25 Score=162.29 Aligned_cols=155 Identities=32% Similarity=0.381 Sum_probs=115.8
Q ss_pred EEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 24 LLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
|+++|++|||||||++++.+..+. ...||.+....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~-------------------------------------------- 37 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV-------------------------------------------- 37 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE--------------------------------------------
Confidence 799999999999999999876543 33444432110
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
.+...+..+.+||++|++.+...+. .+++.+|++++|+|++++.++.....++.++.... .++|+++
T Consensus 38 -----~i~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piil 104 (164)
T cd04162 38 -----AIPTQDAIMELLEIGGSQNLRKYWK------RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVV 104 (164)
T ss_pred -----EEeeCCeEEEEEECCCCcchhHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEE
Confidence 0122345689999999998887777 67889999999999999999988888888876432 6899999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc------ccchHHHHHHHhh
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM------RQGYGDGFRWLAN 246 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------g~gv~~l~~~l~~ 246 (249)
|+||+|+......+++.+.+..... .....++++++||++ ++|++++|+.|..
T Consensus 105 v~NK~Dl~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 105 LANKQDLPAARSVQEIHKELELEPI-----------ARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeCcCCcCCCCHHHHHHHhCChhh-----------cCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 9999999876556655544432220 011347889999988 9999999998764
No 93
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=3.5e-25 Score=166.76 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=115.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC--CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.||+++|++|+|||||+++++++.+.. +.||++......
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~--------------------------------------- 41 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAK--------------------------------------- 41 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEE---------------------------------------
Confidence 489999999999999999999877653 444443221111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||++|++++..... ..+..+|++++|+|++++.++..+..|+..+... ..+.|
T Consensus 42 ------~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p 107 (193)
T cd04118 42 ------RMVVGERVVTLGIWDTAGSERYEAMSR------IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCK 107 (193)
T ss_pred ------EEEECCEEEEEEEEECCCchhhhhhhH------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCC
Confidence 001122334578999999988877766 5567899999999999999998887777776542 24799
Q ss_pred EEEEEecCCCCCC------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHGA------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+... ...+++.++.+... .+++++||++|.|++++++++.+.+
T Consensus 108 iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 108 IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----------------AQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEEEEcccccccccccCccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999998642 12334444444433 6799999999999999999998753
No 94
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=5.9e-25 Score=161.28 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=114.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcC--CCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD--RLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.||+++|++|||||||+++|... .+. .+.||.+.......
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~------------------------------------- 43 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKE------------------------------------- 43 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEE-------------------------------------
Confidence 48999999999999999999854 232 33444443321110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
... -......+.+||++|++.+....+ ..+..+|++++|+|.+++.++..+..|+..+.... .+.
T Consensus 44 ------~~~-~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~ 108 (164)
T cd04101 44 ------VPV-DTDNTVELFIFDSAGQELYSDMVS------NYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHM 108 (164)
T ss_pred ------EEe-CCCCEEEEEEEECCCHHHHHHHHH------HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCC
Confidence 000 012235688999999988877666 55688999999999999999988887877765432 569
Q ss_pred cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+. ....+...+..... .+++++||++|.|++++++.|.+.+
T Consensus 109 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 109 PGVLVGNKMDLADKAEVTDAQAQAFAQANQ-----------------LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 99999999999653 23333333333322 6799999999999999999998875
No 95
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=4.7e-25 Score=167.83 Aligned_cols=159 Identities=23% Similarity=0.216 Sum_probs=120.7
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.+||+|+|++|+|||||+++|+..++.. ..||++......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~--------------------------------------- 46 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--------------------------------------- 46 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEE---------------------------------------
Confidence 4799999999999999999999877653 334443222111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+||++|++.+...+. .++..+|++++|+|++++.++..+..|+..+... .....|
T Consensus 47 ------~i~~~~~~i~l~l~Dt~G~~~~~~~~~------~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~p 113 (210)
T PLN03108 47 ------MITIDNKPIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMT 113 (210)
T ss_pred ------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh-cCCCCc
Confidence 001122234588999999988877666 5667899999999999999999888777766433 235799
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++++||+|+.+ ....++..++++... ++++++||+++.|++++|+++.+.+
T Consensus 114 iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 114 IMLIGNKCDLAHRRAVSTEEGEQFAKEHG-----------------LIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEEEECccCccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999965 345667777776554 7899999999999999999998754
No 96
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=2.9e-25 Score=164.48 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=112.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|+|||||++++..+.+. ...||........
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------- 40 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS---------------------------------------- 40 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE----------------------------------------
Confidence 48999999999999999999987765 2333332110000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+.+....+.+||++|++.+...+. ..+..+|++++|+|.+++.+|..+...+.+.+... ..+.|+
T Consensus 41 ------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~pi 107 (174)
T cd04135 41 ------VTVGGKQYLLGLYDTAGQEDYDRLRP------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPY 107 (174)
T ss_pred ------EEECCEEEEEEEEeCCCccccccccc------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCE
Confidence 01122234578999999998877776 56788999999999999999988864443333332 468999
Q ss_pred EEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 181 LILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 181 ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
++++||+|+.++ ...++...+.+..+ ..++++|||++|.|++++|+.+.+
T Consensus 108 ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 108 LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG----------------AHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC----------------CCEEEEecCCcCCCHHHHHHHHHH
Confidence 999999998653 22233333433332 247999999999999999999987
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
.+
T Consensus 172 ~~ 173 (174)
T cd04135 172 AI 173 (174)
T ss_pred Hh
Confidence 64
No 97
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=4.3e-25 Score=168.70 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=120.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..+||+++|++|+|||||+++|.+..+. ...||++.......
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~------------------------------------- 53 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT------------------------------------- 53 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEE-------------------------------------
Confidence 3579999999999999999999887765 33444443222110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+.+....+.+||++|++++..... .+++.++++++|+|++++.+|..+..|+..+... ...+.
T Consensus 54 --------v~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~ 118 (216)
T PLN03110 54 --------LQVEGKTVKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH-ADSNI 118 (216)
T ss_pred --------EEECCEEEEEEEEECCCcHHHHHHHH------HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCC
Confidence 01122234688999999998887776 6678899999999999999999988787776443 23579
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.. ....++...+..... ++++++||++|.|++++|++|.+.+
T Consensus 119 piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-----------------~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 119 VIMMAGNKSDLNHLRSVAEEDGQALAEKEG-----------------LSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred eEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999865 233445554444333 7899999999999999999998754
No 98
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=2.4e-25 Score=164.93 Aligned_cols=155 Identities=18% Similarity=0.228 Sum_probs=111.1
Q ss_pred EEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 24 LLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
|+|+|++|+|||||++++.++.+.. +.|+......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 36 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-------------------------------------------- 36 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee--------------------------------------------
Confidence 5899999999999999998876642 2222211000
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCcEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCPVL 181 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~i 181 (249)
....+.+....+.+|||+|++.+...+. ..+..+|++++|+|.+++.+|..+.. |+..+... ..+.|++
T Consensus 37 --~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii 106 (174)
T smart00174 37 --ADVEVDGKPVELGLWDTAGQEDYDRLRP------LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPII 106 (174)
T ss_pred --EEEEECCEEEEEEEEECCCCcccchhch------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEE
Confidence 0011123345689999999998877766 56788999999999999999998754 55555432 2589999
Q ss_pred EEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 182 ILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 182 vv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+|+||+|+... ...++..++.+..+ ..++++|||++|.|++++|+.+.+.
T Consensus 107 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 107 LVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG----------------AVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred EEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC----------------CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999652 22333344444333 1479999999999999999999875
Q ss_pred c
Q psy871 248 I 248 (249)
Q Consensus 248 i 248 (249)
+
T Consensus 171 ~ 171 (174)
T smart00174 171 A 171 (174)
T ss_pred h
Confidence 3
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=7.1e-25 Score=162.07 Aligned_cols=159 Identities=23% Similarity=0.244 Sum_probs=115.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||++++.+..+.. ..+|.+......
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~---------------------------------------- 40 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---------------------------------------- 40 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEE----------------------------------------
Confidence 489999999999999999998876542 222322111100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---CCC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES---LAS 177 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 177 (249)
...+.+....+.+||+||++.+..... ..++.+|++++|+|++++.++.....|...++.... ..+
T Consensus 41 -----~~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
T cd01862 41 -----EVTVDDKLVTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPEN 109 (172)
T ss_pred -----EEEECCEEEEEEEEeCCChHHHHhHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 001122234578999999988877666 567889999999999999998887766666554322 237
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+|+++|+||+|+.. ....++..++.+... ..+++++||++|.|++++++++.+.
T Consensus 110 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 110 FPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG----------------NIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred ceEEEEEECcccccccccCHHHHHHHHHHcC----------------CceEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999973 445666666665432 2689999999999999999998864
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=8.6e-25 Score=159.24 Aligned_cols=156 Identities=28% Similarity=0.433 Sum_probs=115.0
Q ss_pred EEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 24 LLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
|+++|++|||||||+++|.+.++. ...||.+.....+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------------ 39 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV------------------------------------------ 39 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE------------------------------------------
Confidence 799999999999999999887654 2333333221111
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
......+.+||+||++.+...+. .++..+|++++|+|++++.++.....++..+.......++|+++
T Consensus 40 -------~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 106 (159)
T cd04159 40 -------TKGNVTLKVWDLGGQPRFRSMWE------RYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV 106 (159)
T ss_pred -------EECCEEEEEEECCCCHhHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence 11124688999999988877666 56788999999999999988888777788776655556899999
Q ss_pred EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
|+||+|+.+....+++........ .....++++++||++|.|+++++++|.+
T Consensus 107 v~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 107 LGNKNDLPGALSVDELIEQMNLKS------------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeCccccCCcCHHHHHHHhCccc------------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 999999977544444443332211 1123478999999999999999999975
No 101
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=7.5e-25 Score=160.24 Aligned_cols=158 Identities=22% Similarity=0.252 Sum_probs=115.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|+|||||+++|.+..+.. ..++........
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQK---------------------------------------- 40 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEE----------------------------------------
Confidence 489999999999999999999876542 111211111000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
. ..+.+....+.+||++|++.+..... ..++.+|++++|+|+++++++..+..++.++..... .++|+
T Consensus 41 ---~--~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi 108 (162)
T cd04123 41 ---T--VNIGGKRIDLAIWDTAGQERYHALGP------IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISL 108 (162)
T ss_pred ---E--EEECCEEEEEEEEECCchHHHHHhhH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeE
Confidence 0 00112234688999999988877666 456789999999999999999888877777654322 37999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+|+.. +...+++.+..+... .+++++||+++.|++++++++.+.+
T Consensus 109 iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 109 VIVGNKIDLERQRVVSKSEAEEYAKSVG-----------------AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999975 334556666555444 6789999999999999999998865
No 102
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=4.7e-25 Score=164.25 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=118.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|+|||||++++++..+.. ..||........
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------- 41 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKI---------------------------------------- 41 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEE----------------------------------------
Confidence 589999999999999999998766542 333332110000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+...+..+.+||+||++++..... ..+..++++++|+|+++..++..+..++..+++.....+.|+
T Consensus 42 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 109 (180)
T cd04137 42 ------IRYKGQDYHLEIVDTAGQDEYSILPQ------KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI 109 (180)
T ss_pred ------EEECCEEEEEEEEECCChHhhHHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 01122345688999999988877666 566789999999999999999999888888877655567899
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+|+.. ....++.....+... .+++++||+++.|+++++.++.+.+
T Consensus 110 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 110 VLVGNKSDLHTQRQVSTEEGKELAESWG-----------------AAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred EEEEEchhhhhcCccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999864 233344444444333 6899999999999999999998765
No 103
>KOG0087|consensus
Probab=99.93 E-value=1.4e-25 Score=162.09 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=133.2
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
-.||+++|.+++|||-|+.|++.+++. ...+|++....+..
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t-------------------------------------- 55 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRT-------------------------------------- 55 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeec--------------------------------------
Confidence 458999999999999999999999988 56677775554441
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
..+++......+|||+|+++|+++.. .+|+.+.+.++|+|++...+|+.+..|+.++. .....+++
T Consensus 56 -------~~vd~k~vkaqIWDTAGQERyrAitS------aYYrgAvGAllVYDITr~~Tfenv~rWL~ELR-dhad~niv 121 (222)
T KOG0087|consen 56 -------VNVDGKTVKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITRRQTFENVERWLKELR-DHADSNIV 121 (222)
T ss_pred -------eeecCcEEEEeeecccchhhhccccc------hhhcccceeEEEEechhHHHHHHHHHHHHHHH-hcCCCCeE
Confidence 12334455688999999999999888 89999999999999999999999999999986 44557999
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+||.. .+..++...+.+.-. ..++++||..+.|+++.|..+...|
T Consensus 122 imLvGNK~DL~~lraV~te~~k~~Ae~~~-----------------l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 122 IMLVGNKSDLNHLRAVPTEDGKAFAEKEG-----------------LFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EEEeecchhhhhccccchhhhHhHHHhcC-----------------ceEEEecccccccHHHHHHHHHHHH
Confidence 999999999966 566777877777655 8899999999999999998877643
No 104
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=4.1e-25 Score=162.30 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=111.1
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
||+++|++|+|||||++++....+. .+.||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~------------------------------------------- 37 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS------------------------------------------- 37 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-------------------------------------------
Confidence 6899999999999999999865543 22233210000
Q ss_pred eeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC-CCCCc
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-LASCP 179 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p 179 (249)
....+.+....+.+||+||++.+ ..... ..++.+|++++|+|++++.+|..+..|+..+..... ..++|
T Consensus 38 ---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p 108 (165)
T cd04146 38 ---RQVTIDGEQVSLEILDTAGQQQADTEQLE------RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP 108 (165)
T ss_pred ---EEEEECCEEEEEEEEECCCCcccccchHH------HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 00111233456889999998752 22233 456789999999999999999988877666544321 35799
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc-chHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ-GYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~i 248 (249)
+++|+||+|+.. ....++..++.+... .+++++||++|. |++++|+.+.+.+
T Consensus 109 iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 109 VILVGNKADLLHYRQVSTEEGEKLASELG-----------------CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEEEECCchHHhCccCHHHHHHHHHHcC-----------------CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 999999999854 334555566655544 689999999995 9999999998764
No 105
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=6.5e-25 Score=164.65 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=87.5
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCcEEEEEecCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
.+....+.+|||+|++.. .+. .++..+|++++|+|++++.+|..+.. |+..+... ..+.|+++|+||+|
T Consensus 62 ~~~~v~l~iwDTaG~~~~--~~~------~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~D 131 (195)
T cd01873 62 DGVSVSLRLWDTFGDHDK--DRR------FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLD 131 (195)
T ss_pred CCEEEEEEEEeCCCChhh--hhc------ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchh
Confidence 344567999999998742 233 46789999999999999999998864 66655432 25789999999999
Q ss_pred CCC---------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 189 KHG---------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 189 l~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+.+ .+..++..++.+..+ +++++|||++|.|++++|+.+.+.
T Consensus 132 L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----------------~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 132 LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----------------IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----------------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 853 345667777777665 789999999999999999999864
No 106
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=1e-24 Score=167.09 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=111.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+||+++|++|+|||||+++++.+.+. .+.|+.+......
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~--------------------------------------- 41 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYER--------------------------------------- 41 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEE---------------------------------------
Confidence 48999999999999999999876653 2333332111110
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcccc-ccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES-LASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~-~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+.+.+..+.+||++|++. .... ..+. .+|++++|+|++++.+|..+..++..+.......++
T Consensus 42 ------~i~~~~~~~~l~i~Dt~G~~~--~~~~------~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~ 107 (221)
T cd04148 42 ------TVSVDGEESTLVVIDHWEQEM--WTED------SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDR 107 (221)
T ss_pred ------EEEECCEEEEEEEEeCCCcch--HHHh------HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 011122345688999999872 1222 2234 899999999999999999888787777654334679
Q ss_pred cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+. ...++..++..... .+++++||++|.|++++++++.+.+
T Consensus 108 piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 108 PIILVGNKSDLARSREVSVQEGRACAVVFD-----------------CKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred CEEEEEEChhccccceecHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999653 33444444444333 6899999999999999999998765
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.7e-24 Score=159.11 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=107.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
.||+++|.+|||||||+++|..+.+....|+..... .+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~----------------------------------------- 38 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TI----------------------------------------- 38 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-Ee-----------------------------------------
Confidence 389999999999999999998876643222211000 00
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
...+......+.+||+||.+.+..... ..+..+|++++|+|++++.++..+...+...++... .+.|++
T Consensus 39 ----~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pvi 107 (166)
T cd01893 39 ----PADVTPERVPTTIVDTSSRPQDRANLA------AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPII 107 (166)
T ss_pred ----eeeecCCeEEEEEEeCCCchhhhHHHh------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEE
Confidence 011123345789999999876655444 445789999999999999999987544433333322 479999
Q ss_pred EEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 182 ILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 182 vv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+|+||+|+.+.... +++........ ...++++|||++|.|++++|+.+.+.
T Consensus 108 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 108 LVGNKSDLRDGSSQAGLEEEMLPIMNEFR---------------EIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred EEEEchhcccccchhHHHHHHHHHHHHHh---------------cccEEEEeccccccCHHHHHHHHHHH
Confidence 99999999764332 22222222221 11379999999999999999998765
No 108
>KOG0091|consensus
Probab=99.93 E-value=1.7e-24 Score=149.74 Aligned_cols=165 Identities=21% Similarity=0.286 Sum_probs=132.6
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
++.=+.++.|+|++-+|||+||+.++.+.+. ...||++ -.-+. +++
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvg------------------------vdffa-rli-------- 50 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVG------------------------VDFFA-RLI-------- 50 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccc------------------------hHHHH-HHH--------
Confidence 3445779999999999999999999877765 3344443 22222 121
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
..-++....+.+|||+|+++|.++.. ++|..+-.+++|+|.++..+|+++..|+++.......
T Consensus 51 -----------e~~pg~riklqlwdtagqerfrsitk------syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~ 113 (213)
T KOG0091|consen 51 -----------ELRPGYRIKLQLWDTAGQERFRSITK------SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQG 113 (213)
T ss_pred -----------hcCCCcEEEEEEeeccchHHHHHHHH------HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCC
Confidence 11133445789999999999999999 8999999999999999999999999999988765543
Q ss_pred C-CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 A-SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~-~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+ ++-+.+|+.|+||.. +++.++.+.+.+..+ ..++++||++|.|+++.|..|.+.|
T Consensus 114 P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg-----------------M~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 114 PDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG-----------------MAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred CCeeEEEEeccccchhhhccccHHHHHHHHHhcC-----------------ceEEEecccCCCcHHHHHHHHHHHH
Confidence 3 455679999999966 788899999999887 8999999999999999999988754
No 109
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=174.88 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=128.9
Q ss_pred eceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHH-----Hhhhhcc
Q psy871 66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTD 140 (249)
Q Consensus 66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~ 140 (249)
.-++.++|.|++|||+++|++.+.+.....+..+.+++.....++..+..+.++||+|..+-....+. ....+..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 36899999999999999999999999988999999999999988888888999999995543333321 1234456
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSE 218 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
+..++++++|+|++.+.+-++. .+..+..+ .+.++++|+||+|+.+. ...++....++...
T Consensus 258 I~~a~vvllviDa~~~~~~qD~--~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l------------ 320 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDL--RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL------------ 320 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHH--HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh------------
Confidence 7889999999999998776665 34444444 78999999999999875 44555554454432
Q ss_pred CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 219 MSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
......+++++||++|.|++++++.+.+.
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 23355899999999999999999988653
No 110
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=8.7e-25 Score=160.97 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=114.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+.+||+++|.+|+|||||++++.++.+. .+.||.+.......
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~----------------------------------- 46 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNT----------------------------------- 46 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEE-----------------------------------
Confidence 35679999999999999999999988764 44555543322110
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+.+....+.+||++|.+.+..... .++..+|++++|+|++++.++..+..++..+.. ..
T Consensus 47 ----------~~~~~~~~~l~~~d~~g~~~~~~~~~------~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~ 107 (169)
T cd01892 47 ----------VEVYGQEKYLILREVGEDEVAILLND------AELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LG 107 (169)
T ss_pred ----------EEECCeEEEEEEEecCCcccccccch------hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CC
Confidence 01122234678999999988776666 567899999999999999999887666665422 24
Q ss_pred CCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+.+.. ...+..++.+... ...++++||++|.|++++++.|.+.+
T Consensus 108 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 108 EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG----------------LPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCeEEEEEEcccccccccccccCHHHHHHHcC----------------CCCCEEEEeccCccHHHHHHHHHHHh
Confidence 79999999999996532 1222333333332 12468999999999999999998754
No 111
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=3.5e-24 Score=155.95 Aligned_cols=156 Identities=24% Similarity=0.296 Sum_probs=118.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||++++.+..+... .+|.+.......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------- 41 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKT--------------------------------------- 41 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEE---------------------------------------
Confidence 4899999999999999999998776643 444443322221
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
.........+.+||+||+..+..... ..++.+|++++|+|++++.++..+..++..+... .....|+
T Consensus 42 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ 108 (159)
T cd00154 42 ------IEIDGKTVKLQIWDTAGQERFRSITP------SYYRGAHGAILVYDITNRESFENLDKWLKELKEY-APENIPI 108 (159)
T ss_pred ------EEECCEEEEEEEEecCChHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcE
Confidence 01112335688999999987777665 5567899999999999999998888777776543 2256999
Q ss_pred EEEEecCCCC--CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 181 LILGNKIDKH--GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 181 ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
++++||+|+. .....+++.++..... .+++++||+++.|+++++.+|.+
T Consensus 109 ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 109 ILVGNKIDLEDQRQVSTEEAQQFAKENG-----------------LLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEEEEcccccccccccHHHHHHHHHHcC-----------------CeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999995 3556667766666544 78999999999999999999864
No 112
>KOG0093|consensus
Probab=99.93 E-value=6.7e-25 Score=149.05 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=125.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
|++++|.+.+|||||+.+.++..+.. ...|.+......
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK----------------------------------------- 61 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK----------------------------------------- 61 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe-----------------------------------------
Confidence 99999999999999999999887763 223333221111
Q ss_pred eeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 102 RRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 102 ~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+++ ....+.+|||.|++++..+.. .++++++++++++|+++.++|..++.|...+.. ..-.+.|+
T Consensus 62 -----Tvyr~~kRiklQiwDTagqEryrtiTT------ayyRgamgfiLmyDitNeeSf~svqdw~tqIkt-ysw~naqv 129 (193)
T KOG0093|consen 62 -----TVYRSDKRIKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNSVQDWITQIKT-YSWDNAQV 129 (193)
T ss_pred -----EeeecccEEEEEEEecccchhhhHHHH------HHhhccceEEEEEecCCHHHHHHHHHHHHHhee-eeccCceE
Confidence 11222 235689999999999988888 788999999999999999999999988887743 24468999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||||+.+ ..+.+..+.+.+.++ ..+|++|||.+.|++++|+.|...|
T Consensus 130 ilvgnKCDmd~eRvis~e~g~~l~~~LG-----------------fefFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 130 ILVGNKCDMDSERVISHERGRQLADQLG-----------------FEFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred EEEecccCCccceeeeHHHHHHHHHHhC-----------------hHHhhhcccccccHHHHHHHHHHHH
Confidence 99999999976 355678888888887 7899999999999999999998765
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=2.8e-24 Score=156.87 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=117.2
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
||+++|++|||||||++++++..+. ...|+.. ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~---~~~----------------------------------------- 36 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE---DSY----------------------------------------- 36 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh---HeE-----------------------------------------
Confidence 6899999999999999999876543 2222221 000
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
.....+......+.+||+||++.+..... ..++.+|++++|+|.+++.++..+..++..+.........|++
T Consensus 37 --~~~~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 108 (160)
T cd00876 37 --RKTIVVDGETYTLDILDTAGQEEFSAMRD------LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV 108 (160)
T ss_pred --EEEEEECCEEEEEEEEECCChHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00011122245688999999988777666 5567899999999999999999888788777665444689999
Q ss_pred EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++||+|+.. ....+++.+..+... .+++++||+++.|+++++++|.+++
T Consensus 109 vv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 109 LVGNKCDLENERQVSKEEGKALAKEWG-----------------CPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred EEEECCcccccceecHHHHHHHHHHcC-----------------CcEEEeccCCCCCHHHHHHHHHhhC
Confidence 9999999975 334556666666544 6899999999999999999998864
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=2.4e-24 Score=159.10 Aligned_cols=156 Identities=20% Similarity=0.264 Sum_probs=109.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|++|||||||+++|++..+. ...|+........
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT---------------------------------------- 40 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE----------------------------------------
Confidence 48999999999999999999987763 2222221110000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
....+....+.+||+||++.+..... ..+..+|++++|+|++++.++......+...+... ..+.|+
T Consensus 41 ------~~~~~~~~~l~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ 107 (171)
T cd00157 41 ------VTVDGKQVNLGLWDTAGQEEYDRLRP------LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY-CPNVPI 107 (171)
T ss_pred ------EEECCEEEEEEEEeCCCcccccccch------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCE
Confidence 01113344688999999988766555 45578999999999999999887654433333222 247999
Q ss_pred EEEEecCCCCCCCC-------------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 181 LILGNKIDKHGAAS-------------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 181 ivv~nK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
++|+||+|+..... .++..++..... ..+++++||++|.|++++++++.+
T Consensus 108 ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 108 ILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG----------------AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC----------------CeEEEEeecCCCCCHHHHHHHHhh
Confidence 99999999976432 333444444333 248999999999999999999875
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=4.2e-24 Score=161.34 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=112.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
||+++|++|||||||++++++..+.. ..+|.... ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~------------------------------------------ 37 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEM-HR------------------------------------------ 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhh-ee------------------------------------------
Confidence 68999999999999999998776542 11222100 00
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
....+.+....+.+||++|+..+...+. .++..+|++++|+|++++.++..+..++..+.......++|++
T Consensus 38 ---~~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 108 (198)
T cd04147 38 ---KEYEVGGVSLTLDILDTSGSYSFPAMRK------LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV 108 (198)
T ss_pred ---EEEEECCEEEEEEEEECCCchhhhHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 0011112234688999999988877666 5678899999999999999999888777777665444679999
Q ss_pred EEEecCCCCCC---CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHGA---ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+||+|+... ...++..+.... . ...+++++||++|.|++++++++.+.+
T Consensus 109 lv~NK~Dl~~~~~~v~~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 109 VVGNKADSLEEERQVPAKDALSTVEL-D---------------WNCGFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred EEEEccccccccccccHHHHHHHHHh-h---------------cCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999652 122222222211 0 125799999999999999999998764
No 116
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.92 E-value=4.9e-24 Score=158.07 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=109.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|++|||||||++++.+..+. .+.||.+.....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~----------------------------------------- 40 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA----------------------------------------- 40 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-----------------------------------------
Confidence 58999999999999999999987765 233443211100
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p 179 (249)
...+.+....+.+|||+|++.+...+. ..+..+|++++|+|++++++|..+.. |+..+... ..+.|
T Consensus 41 -----~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p 107 (175)
T cd01870 41 -----DIEVDGKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVP 107 (175)
T ss_pred -----EEEECCEEEEEEEEeCCCchhhhhccc------cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 011223345688999999988776655 45688999999999999999988754 44444322 25799
Q ss_pred EEEEEecCCCCCCCCH--------------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 180 VLILGNKIDKHGAASE--------------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
+++|+||+|+...... .+..+..+.. ...++++|||++|.|++++|++|.
T Consensus 108 iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 108 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI----------------GAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc----------------CCcEEEEeccccCcCHHHHHHHHH
Confidence 9999999998653111 1122222211 125799999999999999999998
Q ss_pred hhc
Q psy871 246 NYI 248 (249)
Q Consensus 246 ~~i 248 (249)
+..
T Consensus 172 ~~~ 174 (175)
T cd01870 172 RAA 174 (175)
T ss_pred HHh
Confidence 753
No 117
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=4e-24 Score=158.20 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=110.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+|++++|++|+|||||++++..+.+.. +.||.. ..+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---~~~---------------------------------------- 37 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF---DNF---------------------------------------- 37 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---eee----------------------------------------
Confidence 489999999999999999998766542 223321 000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 179 (249)
.....+.+....+.+||+||++++...+. ..++.+|++++|+|++++.+|..+. .|+..+... ..+.|
T Consensus 38 ---~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~p 106 (173)
T cd04130 38 ---SVVVLVDGKPVRLQLCDTAGQDEFDKLRP------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAP 106 (173)
T ss_pred ---eEEEEECCEEEEEEEEECCCChhhccccc------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 00011223345688999999988887776 5678899999999999999998875 455555432 25799
Q ss_pred EEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 180 VLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 180 ~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
+++++||+|+... +..++...+.+... ..++++|||++|.|++++|+.+.
T Consensus 107 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~----------------~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 107 IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG----------------ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC----------------CCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999998642 23344444444333 24899999999999999998875
Q ss_pred h
Q psy871 246 N 246 (249)
Q Consensus 246 ~ 246 (249)
.
T Consensus 171 ~ 171 (173)
T cd04130 171 L 171 (173)
T ss_pred h
Confidence 3
No 118
>KOG0071|consensus
Probab=99.92 E-value=3.3e-24 Score=144.50 Aligned_cols=165 Identities=27% Similarity=0.408 Sum_probs=145.5
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+..++.+|+.+|..+|||||++..|..+......||.+..++.+.
T Consensus 13 f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVt----------------------------------- 57 (180)
T KOG0071|consen 13 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT----------------------------------- 57 (180)
T ss_pred hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEE-----------------------------------
Confidence 457799999999999999999999999999999999998888872
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+..+.+||..|++.....++ .++....++|+|+|+.+.+..++.++++..++.+..+.
T Consensus 58 --------------ykN~kfNvwdvGGqd~iRplWr------hYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~ 117 (180)
T KOG0071|consen 58 --------------YKNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMR 117 (180)
T ss_pred --------------eeeeEEeeeeccCchhhhHHHH------hhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhh
Confidence 1245678899999988888888 88888999999999999888888888999999888788
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..|+++.+||.|+..+..++++..+++.-. ...+.+.+.++||.+|.|+.|.+.||.+.+
T Consensus 118 ~~~~LvlANkQDlp~A~~pqei~d~leLe~------------~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 118 DAIILILANKQDLPDAMKPQEIQDKLELER------------IRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cceEEEEecCcccccccCHHHHHHHhcccc------------ccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 999999999999999999999999888654 345668999999999999999999998754
No 119
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.2e-23 Score=176.26 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=108.8
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhh---HHHHh--hhhccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEES---KSELQ--CLLTDE 141 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~---~~~~~--~~~~~~ 141 (249)
.++.++|.+++|||++++++....+....+..+.++......+...+..+.+|||||..+.... .+... .....+
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i 291 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAI 291 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHH
Confidence 5789999999999999999998876433334444444433333334556789999996422111 11111 112356
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
..+|++++|+|+++..++++.. ++..+. . .++|+++|+||+|+.+............... ...
T Consensus 292 ~~ad~vilV~Da~~~~s~~~~~-~~~~~~-~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l------------~~~ 354 (472)
T PRK03003 292 EAAEVAVVLIDASEPISEQDQR-VLSMVI-E---AGRALVLAFNKWDLVDEDRRYYLEREIDREL------------AQV 354 (472)
T ss_pred hcCCEEEEEEeCCCCCCHHHHH-HHHHHH-H---cCCCEEEEEECcccCChhHHHHHHHHHHHhc------------ccC
Confidence 7899999999999987777653 333332 2 5799999999999976322222222222111 011
Q ss_pred CceeEEEeeeccccchHHHHHHHhhhc
Q psy871 222 RPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+++++||++|.|++++++.+.+.+
T Consensus 355 ~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 355 PWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 236899999999999999999998754
No 120
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=1.9e-23 Score=153.97 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=111.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++|+++|++|+|||||++++..+.+. ...+|++.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI--------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEE---------------------------------------
Confidence 4579999999999999999999865543 122222211100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
....+.+....+.+||++|++.+..... ..+..+|++++|+|++++.++..+..++..+.. ....+.
T Consensus 47 ------~~~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~ 113 (169)
T cd04114 47 ------KTVEIKGEKIKLQIWDTAGQERFRSITQ------SYYRSANALILTYDITCEESFRCLPEWLREIEQ-YANNKV 113 (169)
T ss_pred ------EEEEECCEEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCCCCC
Confidence 0011222234578999999988777666 567889999999999999999887767665532 223579
Q ss_pred cEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++++||+|+.+.. ..+....+.+.. ..++++|||++|.|++++++++.+++
T Consensus 114 ~~i~v~NK~D~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 114 ITILVGNKIDLAERREVSQQRAEEFSDAQ-----------------DMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eEEEEEECcccccccccCHHHHHHHHHHc-----------------CCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 999999999986522 222222222222 26799999999999999999998764
No 121
>KOG0081|consensus
Probab=99.92 E-value=4.5e-25 Score=151.89 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=130.4
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
|.+.+|++|+||||++.+.+++.+- ...+|++.+.... ++.+...... +.+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreK-------rvvY~s~gp~-------------------g~g-- 62 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREK-------RVVYNSSGPG-------------------GGG-- 62 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccc-------eEEEeccCCC-------------------CCC--
Confidence 7788999999999999999998876 3445555444332 3333321111 100
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
+.....+.+|||+|+++|.++.. ..+..+..++++||.++..+|.+...|+.++.......+..++
T Consensus 63 --------r~~rihLQlWDTAGQERFRSLTT------AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDiv 128 (219)
T KOG0081|consen 63 --------RGQRIHLQLWDTAGQERFRSLTT------AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIV 128 (219)
T ss_pred --------cceEEEEeeeccccHHHHHHHHH------HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 12235688999999999999988 6678899999999999999999999999999887777788899
Q ss_pred EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+++||+|+.+ .++.++..+...... +|||++||-+|.|+++..+.|.+.
T Consensus 129 lcGNK~DL~~~R~Vs~~qa~~La~kyg-----------------lPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 129 LCGNKADLEDQRVVSEDQAAALADKYG-----------------LPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred EEcCccchhhhhhhhHHHHHHHHHHhC-----------------CCeeeeccccCcCHHHHHHHHHHH
Confidence 9999999977 466677888888877 999999999999998877766553
No 122
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=1.6e-23 Score=176.16 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=110.9
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHH-----hhhhccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL-----QCLLTDE 141 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~-----~~~~~~~ 141 (249)
.++.++|.+++|||++++++.........+..+.+.......+...+..+.+|||||..+........ ...+..+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 36899999999999999999987654333344445444434443345578999999976554433211 2234567
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC-CCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH-GAASEEEIRQYFGLYGLTTGKVATPRSEMS 220 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
..+|++++|+|+++..+.++.. .+... .. .++|+++|+||+|+. +....+++.+.++... ..
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~~~-~~~~~-~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~ 315 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQDLR-IAGLI-LE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------PF 315 (429)
T ss_pred HhCCEEEEEEECCCCccHHHHH-HHHHH-HH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------cc
Confidence 8999999999999876666542 22222 22 579999999999998 2222333333333211 11
Q ss_pred CCceeEEEeeeccccchHHHHHHHhhh
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
....+++++||++|.|++++++++.+.
T Consensus 316 ~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 316 LDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred CCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 134789999999999999999998764
No 123
>KOG0395|consensus
Probab=99.92 E-value=6.5e-24 Score=158.28 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=133.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++||+++|.+|+|||+|+.++....+. .+.||++......
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~-------------------------------------- 43 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKE-------------------------------------- 43 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEE--------------------------------------
Confidence 5789999999999999999999998887 5567776211111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+.+....+.++||+|++.+..... .++..+|+.++|+++++..+|+.+..++..+.+.......
T Consensus 44 --------~~v~~~~~~l~ilDt~g~~~~~~~~~------~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~ 109 (196)
T KOG0395|consen 44 --------LTVDGEVCMLEILDTAGQEEFSAMRD------LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDV 109 (196)
T ss_pred --------EEECCEEEEEEEEcCCCcccChHHHH------HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCC
Confidence 12234456788999999999998888 7788899999999999999999999888888766666779
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.. .+..++..+..+.+. ++++++||+...+++++|..|.+.+
T Consensus 110 PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-----------------~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 110 PIILVGNKCDLERERQVSEEEGKALARSWG-----------------CAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred CEEEEEEcccchhccccCHHHHHHHHHhcC-----------------CcEEEeeccCCcCHHHHHHHHHHHH
Confidence 9999999999976 778888888877766 7899999999999999999998764
No 124
>KOG0086|consensus
Probab=99.91 E-value=1.2e-23 Score=143.88 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=123.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.|++++|++|+|||+|+.++....+. ....|++...+.-+ .-+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrI--------inV---------------------------- 53 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRI--------VNV---------------------------- 53 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeeccee--------eee----------------------------
Confidence 39999999999999999999887766 34445554333321 111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
-+....+.+|||+|+++|.+..+ ++|+.+...++|+|+++.++|..+..|+...... ..+++.+
T Consensus 54 ---------GgK~vKLQIWDTAGQErFRSVtR------sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvv 117 (214)
T KOG0086|consen 54 ---------GGKTVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVV 117 (214)
T ss_pred ---------cCcEEEEEEeecccHHHHHHHHH------HHhccccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEE
Confidence 12235689999999999999999 9999999999999999999999999999887543 3378899
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++++||.||.. +++-.+...+.+.- .+.+.++||++|+|+++.|-...+.
T Consensus 118 iL~GnKkDL~~~R~VtflEAs~FaqEn-----------------el~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 118 ILCGNKKDLDPEREVTFLEASRFAQEN-----------------ELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred EEeCChhhcChhhhhhHHHHHhhhccc-----------------ceeeeeecccccccHHHHHHHHHHH
Confidence 99999999966 44555666665543 3789999999999999988776553
No 125
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=2.1e-23 Score=156.19 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=108.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+|+|++|+|||||++++..+.+. .+.+|......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~------------------------------------------ 39 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV------------------------------------------ 39 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE------------------------------------------
Confidence 58999999999999999999865543 12222110000
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p 179 (249)
. ...+.+....+.+||++|++.+..... ..+..+|++++++|+++.++|..+.. |+..+... ..+.|
T Consensus 40 --~--~~~~~~~~~~l~i~Dt~g~~~~~~~~~------~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~p 107 (187)
T cd04129 40 --T--DCRVDGKPVQLALWDTAGQEEYERLRP------LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVP 107 (187)
T ss_pred --E--EEEECCEEEEEEEEECCCChhccccch------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 0 001122334688999999887765544 34578999999999999999998864 55555432 24699
Q ss_pred EEEEEecCCCCCC------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 180 VLILGNKIDKHGA------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 180 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+++|+||+|+... ...++...+.+... ..++++|||++|.|++++|+++.+.
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 108 VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG----------------AKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred EEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC----------------CcEEEEccCCCCCCHHHHHHHHHHH
Confidence 9999999998542 12233444444332 2479999999999999999999865
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=1.9e-23 Score=153.86 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=98.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++|+++|++|||||||+++|++..+... +.. .. +
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~-~~~-------------------------------------------~~--t 34 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA-PYP-------------------------------------------FT--T 34 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC-CCC-------------------------------------------Cc--c
Confidence 5899999999999999999987654210 000 00 0
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHH-H--HhhhhccccccceEEEEEECCChhhh--HhhHHHHHHHHhccCCC
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS-E--LQCLLTDESLASSIVFLVDTSDRERF--EESKSELQCLLTDESLA 176 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~--~~~~~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~ 176 (249)
.......+...+..+.+|||||+........ . ..........+|++++|+|+++..++ .....++..+... ..
T Consensus 35 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~ 112 (168)
T cd01897 35 KSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FK 112 (168)
T ss_pred cceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cC
Confidence 0000011112245789999999742111000 0 00111112346899999999987654 3333344444321 24
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+.....+..++.+. ...++++|||++|.|++++++++.+.|
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEEL-----------------EGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhh-----------------ccCceEEEEecccCCHHHHHHHHHHHh
Confidence 7999999999999764222222222211 237899999999999999999999875
No 127
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.1e-23 Score=169.28 Aligned_cols=162 Identities=23% Similarity=0.249 Sum_probs=112.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..|+|+|.||||||||+++|+..... ++.+|+.+..+.+.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~------------------------------------- 201 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVR------------------------------------- 201 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEE-------------------------------------
Confidence 47999999999999999999876533 33445554444441
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~ 176 (249)
+ .....+.+||+||...-. ........+++++++++++++|+|+++.++++....+..++.... ...
T Consensus 202 ----------~-~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~ 270 (335)
T PRK12299 202 ----------V-DDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA 270 (335)
T ss_pred ----------e-CCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 0 012358899999975322 222344677888999999999999998777777766666654321 124
Q ss_pred CCcEEEEEecCCCCCCCCHH--HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEE--EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+....... ....+.+.. ..+++++||++++|+++++++|.+.+
T Consensus 271 ~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~-----------------~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEEREKRAALELAAL-----------------GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred cCCeEEEEECcccCCchhHHHHHHHHHHHhc-----------------CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999997542211 122222211 26799999999999999999998765
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=3.2e-23 Score=152.93 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=81.4
Q ss_pred eEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhcc-CCCCCcEEEEEecCCCC
Q psy871 114 AIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDE-SLASCPVLILGNKIDKH 190 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~ 190 (249)
..+.+|||||+..... .......++..+..+|++++|+|++++ +++..+..+.+.+.... ...++|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 3689999999642211 112223444556789999999999998 77777766666654321 12478999999999997
Q ss_pred CCCCHHH-HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 191 GAASEEE-IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.....+ ........ ...+++++||+++.|++++++++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 128 DEEELFELLKELLKEL----------------WGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CchhhHHHHHHHHhhC----------------CCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 6433322 22222221 126799999999999999999998764
No 129
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=8e-23 Score=156.38 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=117.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+..+||+++|++|||||||++++..+.+. .+.||++.......
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~------------------------------------ 50 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLK------------------------------------ 50 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEE------------------------------------
Confidence 45789999999999999999887766554 45566654333221
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.........+.+||++|++.+...+. .++..++++++|+|.++..++..+..|+..+... ..+
T Consensus 51 ---------~~~~~~~i~i~~~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~ 113 (215)
T PTZ00132 51 ---------FYTNCGPICFNVWDTAGQEKFGGLRD------GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CEN 113 (215)
T ss_pred ---------EEECCeEEEEEEEECCCchhhhhhhH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCC
Confidence 00122345688999999988876665 5567889999999999999999988887777543 257
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++++||+|+.+.....+..++.+... +.++++||++|.|+++.+.+|++.+
T Consensus 114 ~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 114 IPIVLVGNKVDVKDRQVKARQITFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred CCEEEEEECccCccccCCHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999865322223333333322 6899999999999999999998754
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=4.4e-23 Score=153.48 Aligned_cols=113 Identities=20% Similarity=0.198 Sum_probs=80.1
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
+.+..+.+|||||++.+..... .++..+|++++|+|+++..++.....+ .... . .++|+++|+||+|+.
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~~~~------~~~~~ad~~i~v~D~~~~~~~~~~~~~-~~~~-~---~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 64 GQEYLLNLIDTPGHVDFSYEVS------RSLAACEGALLLVDATQGVEAQTLANF-YLAL-E---NNLEIIPVINKIDLP 132 (179)
T ss_pred CCcEEEEEEECCCChhhHHHHH------HHHHhcCeEEEEEECCCCccHhhHHHH-HHHH-H---cCCCEEEEEECCCCC
Confidence 4456788999999998876665 567789999999999987666554433 2222 2 578999999999986
Q ss_pred CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+....+...++.+... ....+++++||++|.|+++++++|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 133 SADPERVKQQIEDVLG--------------LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cCCHHHHHHHHHHHhC--------------CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 5322222223222222 1124589999999999999999998765
No 131
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=7.8e-23 Score=165.57 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=107.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+..+|+++|++|||||||+|+|++..+..+.|+...+...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~-------------------------------------- 91 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSII-------------------------------------- 91 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcE--------------------------------------
Confidence 455699999999999999999998876653333322221111
Q ss_pred ccceeceeccccccceEEEEEeCCCchh-hhhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+...+..+.+|||||... +..... ........+..+|++++|+|+.+ ++.....++...+.. .
T Consensus 92 -------~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~ 159 (339)
T PRK15494 92 -------TGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---L 159 (339)
T ss_pred -------EEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---c
Confidence 011112234689999999743 333332 22334455789999999999876 344433333333332 4
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|.++|+||+|+.+. ...++.+.++... ...+++++||++|.|+++++++|.+.+
T Consensus 160 ~~p~IlViNKiDl~~~-~~~~~~~~l~~~~---------------~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 160 NIVPIFLLNKIDIESK-YLNDIKAFLTENH---------------PDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CCCEEEEEEhhcCccc-cHHHHHHHHHhcC---------------CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 5788899999999754 3444544444321 236799999999999999999998865
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=8.9e-23 Score=160.99 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=102.5
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
+|+++|+||||||||+|+|++..+....+..+.+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i------------------------------------------ 39 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI------------------------------------------ 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE------------------------------------------
Confidence 79999999999999999999876543222111111111
Q ss_pred eceeccccccceEEEEEeCCCchhh-hhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERF-EESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
.......+..+.+|||||.... ....+ ....+...+..+|++++|+|+++..+.. ..+...+.. .+.|+
T Consensus 40 ---~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ 110 (270)
T TIGR00436 40 ---SGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LKRPV 110 (270)
T ss_pred ---EEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cCCCE
Confidence 1111122346889999997543 22222 2233456678999999999999876553 233333333 57999
Q ss_pred EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.+. ++.......+.. .....+++++||++|.|+++++++|.+.+
T Consensus 111 ilV~NK~Dl~~~---~~~~~~~~~~~~------------~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 111 VLTRNKLDNKFK---DKLLPLIDKYAI------------LEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred EEEEECeeCCCH---HHHHHHHHHHHh------------hcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 999999999742 222222222210 00113799999999999999999998765
No 133
>KOG0088|consensus
Probab=99.90 E-value=1e-23 Score=145.08 Aligned_cols=159 Identities=23% Similarity=0.253 Sum_probs=126.3
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.+|++++|.--+|||||+-|++.+.|... .-+++-..+.+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~k----------------------------HlsTlQASF~~k----------- 53 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCK----------------------------HLSTLQASFQNK----------- 53 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchh----------------------------hHHHHHHHHhhc-----------
Confidence 56999999999999999999976555410 011111111111
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...++++...+.+|||+|+++|.++.. -+|..++..++|+|+++.++|+..+.|..++..- ....+.+
T Consensus 54 -----k~n~ed~ra~L~IWDTAGQErfHALGP------IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l 121 (218)
T KOG0088|consen 54 -----KVNVEDCRADLHIWDTAGQERFHALGP------IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIEL 121 (218)
T ss_pred -----ccccccceeeeeeeeccchHhhhccCc------eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEE
Confidence 122345566799999999999999998 8899999999999999999999999999988543 2256889
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++|+||+||.+ +++.++.+.+.+..+ ..++++||+.+.|+.++|+.|...
T Consensus 122 ~IVGNKiDLEeeR~Vt~qeAe~YAesvG-----------------A~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 122 LIVGNKIDLEEERQVTRQEAEAYAESVG-----------------ALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred EEecCcccHHHhhhhhHHHHHHHHHhhc-----------------hhheecccccccCHHHHHHHHHHH
Confidence 99999999965 678899999998877 889999999999999999998764
No 134
>KOG0076|consensus
Probab=99.90 E-value=5.4e-24 Score=148.84 Aligned_cols=171 Identities=32% Similarity=0.493 Sum_probs=136.5
Q ss_pred HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCC--------CCCCCCCCcccceeeeeeeeceEEEEcCC
Q psy871 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL--------AQPVPTLHPILGYLGLWTKSGKLLFLGLD 75 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~~~g~~ 75 (249)
+|.++. .+..+.++|+|+-+||||||+.++....- +.-.||.+...+.+
T Consensus 8 l~~~~~--------~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--------------- 64 (197)
T KOG0076|consen 8 LYKYMF--------KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--------------- 64 (197)
T ss_pred HHHHHh--------hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce---------------
Confidence 666654 46678999999999999999999864321 12223333333333
Q ss_pred CCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC
Q psy871 76 NAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD 155 (249)
Q Consensus 76 ~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~ 155 (249)
+-+...+.+||..|++..++++. .+|..+|++++++|+++
T Consensus 65 ----------------------------------~v~~~~l~fwdlgGQe~lrSlw~------~yY~~~H~ii~viDa~~ 104 (197)
T KOG0076|consen 65 ----------------------------------EVCNAPLSFWDLGGQESLRSLWK------KYYWLAHGIIYVIDATD 104 (197)
T ss_pred ----------------------------------eeccceeEEEEcCChHHHHHHHH------HHHHHhceeEEeecCCC
Confidence 22355789999999999999999 88999999999999999
Q ss_pred hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871 156 RERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235 (249)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 235 (249)
++.|+.....++.+.......+.|+++.+||.|+.+.....++...+.... ....++.++.+|||.+|+
T Consensus 105 ~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e-----------~~~~rd~~~~pvSal~ge 173 (197)
T KOG0076|consen 105 RERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAE-----------LIPRRDNPFQPVSALTGE 173 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhh-----------hcCCccCccccchhhhcc
Confidence 999998888888888887788999999999999998877888877776422 133466899999999999
Q ss_pred chHHHHHHHhhhc
Q psy871 236 GYGDGFRWLANYI 248 (249)
Q Consensus 236 gv~~l~~~l~~~i 248 (249)
|+++..+|+...+
T Consensus 174 gv~egi~w~v~~~ 186 (197)
T KOG0076|consen 174 GVKEGIEWLVKKL 186 (197)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998765
No 135
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=9.6e-23 Score=163.84 Aligned_cols=164 Identities=22% Similarity=0.224 Sum_probs=111.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..|+++|.||||||||+++|+..... ++.+|..+..+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~------------------------------------- 200 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVR------------------------------------- 200 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEE-------------------------------------
Confidence 48999999999999999999876532 23444444433331
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhc-c
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTD-E 173 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~-~ 173 (249)
+ .....+.+||+||..... ........+++++++++++++|+|+++. +++..+..+..++... .
T Consensus 201 ----------~-~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~ 269 (329)
T TIGR02729 201 ----------V-DDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP 269 (329)
T ss_pred ----------e-CCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh
Confidence 0 012468899999975432 2223445677888999999999999976 5566655454444322 1
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
...++|+++|+||+|+..+...++..+.+... ...+++++||++++|+++++++|.+.+.
T Consensus 270 ~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----------------~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 270 ELAEKPRIVVLNKIDLLDEEELAELLKELKKA----------------LGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred hhccCCEEEEEeCccCCChHHHHHHHHHHHHH----------------cCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 23579999999999997642222222222211 1157999999999999999999998763
No 136
>KOG0074|consensus
Probab=99.90 E-value=3.1e-23 Score=140.08 Aligned_cols=175 Identities=31% Similarity=0.393 Sum_probs=147.8
Q ss_pred HHhhhcccccc-eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHH
Q psy871 8 FTGVLGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHML 86 (249)
Q Consensus 8 ~~~~~~~~~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l 86 (249)
+-.++.+.+-+ .+++||+++|--++|||||+..|.++.++...||.+.....++.
T Consensus 3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~------------------------ 58 (185)
T KOG0074|consen 3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY------------------------ 58 (185)
T ss_pred HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee------------------------
Confidence 33445555444 78999999999999999999999999999989999887777621
Q ss_pred hcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHH
Q psy871 87 KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSEL 166 (249)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~ 166 (249)
..+..+.+||..|+......+. .+|+..|.++||+|+++...|+++...+
T Consensus 59 ------------------------~g~f~LnvwDiGGqr~IRpyWs------NYyenvd~lIyVIDS~D~krfeE~~~el 108 (185)
T KOG0074|consen 59 ------------------------DGTFHLNVWDIGGQRGIRPYWS------NYYENVDGLIYVIDSTDEKRFEEISEEL 108 (185)
T ss_pred ------------------------cCcEEEEEEecCCccccchhhh------hhhhccceEEEEEeCCchHhHHHHHHHH
Confidence 2245789999999988888888 8899999999999999999999998899
Q ss_pred HHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 167 QCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 167 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
-+++........|+.+..||.|+..+...+++...++... ...+.+.+.+|||.+++|+.+..+|++.
T Consensus 109 ~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~------------lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 109 VELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAG------------LRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred HHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhh------------hhhceEEeeeCccccccCccCcchhhhc
Confidence 9999888888999999999999998777777766666544 5567799999999999999999999886
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
..
T Consensus 177 n~ 178 (185)
T KOG0074|consen 177 NP 178 (185)
T ss_pred CC
Confidence 54
No 137
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=1.6e-22 Score=154.76 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=116.6
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++...|+++|+||||||||+|+|.+..++...+ .
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~---------------------------------------------k 37 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSP---------------------------------------------K 37 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecC---------------------------------------------C
Confidence 4677889999999999999999998877663222 3
Q ss_pred cccceeceeccccccceEEEEEeCCCchh-hhhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
+.+|+......+...+..++++||||... -..+.+ +.......+..+|++++|+|++++..-.+ +++.+.++.
T Consensus 38 ~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--- 112 (298)
T COG1159 38 PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--- 112 (298)
T ss_pred cchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh---
Confidence 33334344444555578899999999443 233333 33455677899999999999999544322 234443332
Q ss_pred CCCcEEEEEecCCCCCCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++++||+|+..... .....+.+.... ....++++||++|.|++.+.+.+..++
T Consensus 113 ~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---------------~f~~ivpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---------------PFKEIVPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---------------CcceEEEeeccccCCHHHHHHHHHHhC
Confidence 5689999999999987533 233333333322 335899999999999999999998876
No 138
>KOG0095|consensus
Probab=99.90 E-value=4.9e-23 Score=140.44 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=119.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.||+++|..|+|||+|+++++.+-+++ ...|++...-+.
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmik---------------------------------------- 47 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK---------------------------------------- 47 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEE----------------------------------------
Confidence 599999999999999999999887663 223444332222
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+|||+|+++|.++.+ ++|+.+|++++|+|++-..+|.-+-+|+.++.... ..+.--
T Consensus 48 -----tvev~gekiklqiwdtagqerfrsitq------syyrsahalilvydiscqpsfdclpewlreie~ya-n~kvlk 115 (213)
T KOG0095|consen 48 -----TVEVNGEKIKLQIWDTAGQERFRSITQ------SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLK 115 (213)
T ss_pred -----EEEECCeEEEEEEeeccchHHHHHHHH------HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEE
Confidence 112344556799999999999999999 99999999999999999999999999999886543 245566
Q ss_pred EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||.|+.+. ++.+-.+++.+.. +.-+.++||+...|++.+|..++-++
T Consensus 116 ilvgnk~d~~drrevp~qigeefs~~q-----------------dmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 116 ILVGNKIDLADRREVPQQIGEEFSEAQ-----------------DMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred EeeccccchhhhhhhhHHHHHHHHHhh-----------------hhhhhhhcccchhhHHHHHHHHHHHH
Confidence 899999999763 2222223333322 25689999999999999999887543
No 139
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=3.1e-23 Score=147.66 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=94.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++|+++|.||+|||||+|+|++.+... --++ | .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v-----------------------~n~p---------------------G--~T 34 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV-----------------------GNWP---------------------G--TT 34 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE-----------------------EEST---------------------T--SS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee-----------------------cCCC---------------------C--CC
Confidence 479999999999999999998865331 1111 1 11
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcc--ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD--ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
.......+...+..+.++|+||..++........-...+ ....|++++|+|+++.+.-.. ...+++. .++|
T Consensus 35 v~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ql~e----~g~P 107 (156)
T PF02421_consen 35 VEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY---LTLQLLE----LGIP 107 (156)
T ss_dssp SEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHHHHHH----TTSS
T ss_pred eeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHHHHHH----cCCC
Confidence 111112233345789999999965544333211111122 367999999999998643332 3334332 6899
Q ss_pred EEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 180 VLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
+++++||+|+...... -+...+.+.++ +|++++||++++|++++++.+
T Consensus 108 ~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-----------------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 108 VVVVLNKMDEAERKGIEIDAEKLSERLG-----------------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEEETHHHHHHTTEEE-HHHHHHHHT-----------------S-EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCHHHHHHcCCEECHHHHHHHhC-----------------CCEEEEEeCCCcCHHHHHhhC
Confidence 9999999998652111 12334444445 899999999999999999764
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=2.1e-22 Score=152.90 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=103.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++|+|+|++|||||||++++++..+.. +.+|.......+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~------------------------------------- 83 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRL------------------------------------- 83 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEE-------------------------------------
Confidence 4799999999999999999998865321 111211111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
.+.+ ...+.+|||||.... ......+......+..+|++++|+|++++.++.....+. +++.....
T Consensus 84 ----------~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~ 151 (204)
T cd01878 84 ----------RLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVE-KVLKELGA 151 (204)
T ss_pred ----------EecC-CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCc
Confidence 0111 126889999997321 111122223334467899999999999987776654333 33333333
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+....... ..... ...+++++||++|.|+++++++|.++|
T Consensus 152 ~~~~viiV~NK~Dl~~~~~~~---~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEELE---ERLEA-----------------GRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCEEEEEEccccCChHHHH---HHhhc-----------------CCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 578999999999997642221 11211 236799999999999999999998765
No 141
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.7e-22 Score=168.40 Aligned_cols=161 Identities=25% Similarity=0.259 Sum_probs=106.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..|+|||.||||||||+|+|++.... ++.+|+.+..+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv-------------------------------------- 201 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVV-------------------------------------- 201 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEE--------------------------------------
Confidence 48999999999999999999876543 2344444444433
Q ss_pred ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCCh----hhhHhhH---HHHHHHH
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDR----ERFEESK---SELQCLL 170 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----~~~~~~~---~~~~~~~ 170 (249)
...+..+.++|+||...- .........+++++.+++++++|+|+++. +.+.++. ..+..+.
T Consensus 202 -----------~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 202 -----------QAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred -----------EECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 112345889999996432 22223445677888999999999999853 3333333 3333332
Q ss_pred hcc-------CCCCCcEEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 171 TDE-------SLASCPVLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 171 ~~~-------~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
... ...++|+++|+||+|+.+.... +.+...+... .++++++||+++.|+++++.
T Consensus 271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-----------------g~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-----------------GWPVFEVSAASREGLRELSF 333 (500)
T ss_pred hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-----------------CCeEEEEECCCCCCHHHHHH
Confidence 110 2357999999999999753211 1122222211 26899999999999999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
+|.+.+
T Consensus 334 ~L~ell 339 (500)
T PRK12296 334 ALAELV 339 (500)
T ss_pred HHHHHH
Confidence 998765
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=3.2e-22 Score=162.20 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=106.8
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++|+++|.+|||||||+|+|++.++. .+.+|.++....+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i------------------------------------- 231 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRL------------------------------------- 231 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEE-------------------------------------
Confidence 379999999999999999999986532 2233433322222
Q ss_pred cccceeceeccccccceEEEEEeCCCchh--hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRER--FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~--~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
.++ ....+.+|||+|..+ .....+.+...+..+..+|++++|+|++++..+..... +..++.....
T Consensus 232 ----------~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~ 299 (351)
T TIGR03156 232 ----------DLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEA-VEKVLEELGA 299 (351)
T ss_pred ----------EeC-CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhcc
Confidence 011 123688999999732 23333444455667889999999999999877766543 2333333333
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+... .++..... ...+++++||++|.|+++++++|.+.+
T Consensus 300 ~~~piIlV~NK~Dl~~~---~~v~~~~~------------------~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDE---PRIERLEE------------------GYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCEEEEEEeecCCCh---HhHHHHHh------------------CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 57899999999999753 22221111 013589999999999999999998764
No 143
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=8.2e-22 Score=166.01 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=112.3
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHH-----Hhhhhccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTDE 141 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~~ 141 (249)
-++.++|.+++|||++++++.........+..+.++......+...+..+.++||||.......... ....+..+
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~ 253 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAI 253 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 4788999999999999999997765444444455555554444445567899999996543332211 12334567
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
..+|++++|+|+++..+.++. .+...+.. .+.|+++++||+|+.+....+++.+.+.... ...
T Consensus 254 ~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l------------~~~ 316 (435)
T PRK00093 254 ERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL------------PFL 316 (435)
T ss_pred HHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc------------ccc
Confidence 889999999999987666554 22333322 5799999999999985433334443333221 112
Q ss_pred CceeEEEeeeccccchHHHHHHHhhh
Q psy871 222 RPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
...+++++||++|.|++++++.+.+.
T Consensus 317 ~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 317 DYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 34789999999999999999988753
No 144
>KOG0072|consensus
Probab=99.89 E-value=4.8e-23 Score=139.57 Aligned_cols=168 Identities=24% Similarity=0.352 Sum_probs=139.9
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
-|-.+.++.++.++|.-|+||||.+.++.-++.....||++..++.+ +
T Consensus 11 ~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v----~---------------------------- 58 (182)
T KOG0072|consen 11 ALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETV----P---------------------------- 58 (182)
T ss_pred HhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccc----c----------------------------
Confidence 33344588899999999999999999999999888899998888777 1
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
..+..+.+||..|+.+....++ .+++..|++|+|+|.++.+.......++..++.+.
T Consensus 59 -----------------yKNLk~~vwdLggqtSirPyWR------cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~ 115 (182)
T KOG0072|consen 59 -----------------YKNLKFQVWDLGGQTSIRPYWR------CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE 115 (182)
T ss_pred -----------------cccccceeeEccCcccccHHHH------HHhcccceEEEEEeccchhhhhhhHHHHHHHhccH
Confidence 1234577888888877777777 77788888888888888888877777888888888
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.+..+++++||.|........++...+.... ...+.+.+|++||.+|+|+++.++||.+-+
T Consensus 116 eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~------------Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 116 ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQK------------LKDRIWQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred hhcCceEEEEeccccchhhhhHHHHHHHhChHH------------HhhheeEEEeeccccccCCcHHHHHHHHHH
Confidence 888899999999999988888888887777654 445669999999999999999999998865
No 145
>KOG0083|consensus
Probab=99.89 E-value=4.7e-24 Score=142.65 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=120.9
Q ss_pred EeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccccee
Q psy871 26 FLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRR 103 (249)
Q Consensus 26 vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~ 103 (249)
++|.+++|||+|+-|+.++.+. ...+|++.+..-.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnk------------------------------------------- 38 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNK------------------------------------------- 38 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccc-------------------------------------------
Confidence 7899999999999998776554 2223332111110
Q ss_pred ceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEE
Q psy871 104 VWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183 (249)
Q Consensus 104 ~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 183 (249)
. ..+.+....+.+|||.|+++|.+... .+|+.+|++++++|+.+..+|.+.+.|+.++-+ .......++++
T Consensus 39 l--i~~~~~kvklqiwdtagqerfrsvt~------ayyrda~allllydiankasfdn~~~wlsei~e-y~k~~v~l~ll 109 (192)
T KOG0083|consen 39 L--IDMDDKKVKLQIWDTAGQERFRSVTH------AYYRDADALLLLYDIANKASFDNCQAWLSEIHE-YAKEAVALMLL 109 (192)
T ss_pred e--eccCCcEEEEEEeeccchHHHhhhhH------hhhcccceeeeeeecccchhHHHHHHHHHHHHH-HHHhhHhHhhh
Confidence 0 11234456799999999999999998 889999999999999999999999999988743 33356889999
Q ss_pred EecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 184 GNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 184 ~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+||||+.. .+..++-+...+..+ +|++++||++|.|++..|..|++.+
T Consensus 110 gnk~d~a~er~v~~ddg~kla~~y~-----------------ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 110 GNKCDLAHERAVKRDDGEKLAEAYG-----------------IPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccccccchhhccccchHHHHHHHHC-----------------CCceeccccccccHhHHHHHHHHHH
Confidence 99999944 566778888888777 8999999999999999998887653
No 146
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=6.1e-22 Score=163.08 Aligned_cols=159 Identities=22% Similarity=0.265 Sum_probs=109.6
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.|+++|.||||||||+++|++.... ++.+|..+..+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~-------------------------------------- 201 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVE-------------------------------------- 201 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEE--------------------------------------
Confidence 8999999999999999999976533 33444444333331
Q ss_pred cceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhc-cC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTD-ES 174 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~-~~ 174 (249)
+ ..+..+.+||+||..... ........+++++++++++++|+|+++. +++.+...+..++... ..
T Consensus 202 ---------~-~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~ 271 (424)
T PRK12297 202 ---------T-DDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR 271 (424)
T ss_pred ---------E-eCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchh
Confidence 0 012358999999975422 2223446678888999999999999864 4555554444444321 12
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..++|+++|+||+|+.. ..+.+..+.+... .+++++||++++|+++++++|.+.+
T Consensus 272 L~~kP~IVV~NK~DL~~--~~e~l~~l~~~l~-----------------~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 272 LLERPQIVVANKMDLPE--AEENLEEFKEKLG-----------------PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred ccCCcEEEEEeCCCCcC--CHHHHHHHHHHhC-----------------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35799999999999843 2344444444332 5799999999999999999998765
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.88 E-value=6e-22 Score=141.81 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=71.0
Q ss_pred EEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC-CCCH
Q psy871 117 FLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG-AASE 195 (249)
Q Consensus 117 ~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~ 195 (249)
.+|||||.... ...........++.+|++++|+|++++.++... .+.+. ...|+++|+||+|+.+ ....
T Consensus 38 ~~iDt~G~~~~--~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~--~~~~~------~~~p~ilv~NK~Dl~~~~~~~ 107 (142)
T TIGR02528 38 GAIDTPGEYVE--NRRLYSALIVTAADADVIALVQSATDPESRFPP--GFASI------FVKPVIGLVTKIDLAEADVDI 107 (142)
T ss_pred eeecCchhhhh--hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCCh--hHHHh------ccCCeEEEEEeeccCCcccCH
Confidence 46899996311 112222233457899999999999999887652 22222 1349999999999965 3344
Q ss_pred HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 196 EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
++..++++... ..+++++||++|.|++++++++.
T Consensus 108 ~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 ERAKELLETAG----------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHHcC----------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 45555555433 13799999999999999999885
No 148
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=1.1e-21 Score=143.82 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=71.0
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
...+.+|||||++++..... ..+..+|++++|+|+++ +.+...+ .. +... ...|+++++||+|+
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~------~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~-~~~~--~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNML------AGAGGIDLVLLVVAADEGIMPQTREHL----EI-LELL--GIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHH------hhhhcCCEEEEEEECCCCccHhHHHHH----HH-HHHh--CCCcEEEEEECccc
Confidence 34689999999987754333 56778999999999987 2222222 11 1111 22499999999999
Q ss_pred CCCCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 190 HGAAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 190 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
..... .+++.+.++... ....+++++||++|.|++++++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 117 VDEDWLELVEEEIRELLAGTF--------------LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHHHHHHHHHhcC--------------cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 75321 122333332210 12378999999999999999998864
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=3.6e-21 Score=141.66 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=101.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+.|+++|++|+|||||+++|+..++... .++........
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 4699999999999999999987654421 00000000000
Q ss_pred ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
. .... ..+..+.+|||||++.+...+. ..+..+|++++|+|+++....... ..+..+ .. .++|
T Consensus 41 ---~--~~~~~~~~~~~~iiDtpG~~~~~~~~~------~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~-~~---~~~p 104 (168)
T cd01887 41 ---E--VPAEVLKIPGITFIDTPGHEAFTNMRA------RGASLTDIAILVVAADDGVMPQTI-EAIKLA-KA---ANVP 104 (168)
T ss_pred ---E--EecccCCcceEEEEeCCCcHHHHHHHH------HHHhhcCEEEEEEECCCCccHHHH-HHHHHH-HH---cCCC
Confidence 0 0000 1245688999999988776665 456789999999999885322221 122222 22 5789
Q ss_pred EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+++|+||+|+.... .+.+...+........ +......+++++||++|.|+++++++|.++
T Consensus 105 ~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 105 FIVALNKIDKPNAN-PERVKNELSELGLQGE-------DEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEEEEEceeccccc-HHHHHHHHHHhhcccc-------ccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 99999999987532 3333333332210000 001134689999999999999999999875
No 150
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=4.1e-21 Score=169.64 Aligned_cols=165 Identities=14% Similarity=0.051 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhH---HHH--hhhhccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---SEL--QCLLTDE 141 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~--~~~~~~~ 141 (249)
.++.++|.+++|||+|++++....+....+..+.++......+...+..+.+|||||..+..... +.+ ......+
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i 530 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAI 530 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHh
Confidence 58999999999999999999988754333333444444333333344567799999964211111 111 1123456
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
+.+|++++|+|+++..+.++.. .+..+.. .++|+++|+||+|+.+....+.+...++... ...
T Consensus 531 ~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l------------~~~ 593 (712)
T PRK09518 531 ERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF------------DRV 593 (712)
T ss_pred hcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc------------cCC
Confidence 8899999999999987776653 3333322 5799999999999976433333433333211 112
Q ss_pred CceeEEEeeeccccchHHHHHHHhhhc
Q psy871 222 RPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+++++||++|.|++++++.+.+.+
T Consensus 594 ~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 594 TWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 336789999999999999999987653
No 151
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=3.2e-21 Score=154.16 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=105.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++...|+|+|+||||||||+|+|++..+....+........
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~--------------------------------------- 43 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR--------------------------------------- 43 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc---------------------------------------
Confidence 56778999999999999999999876654322221111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhh-HHH-HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES-KSE-LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~-~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
........+..+.++||||....... .+. .......+..+|++++|+|+++. +.....++...+.. .
T Consensus 44 ------i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~ 112 (292)
T PRK00089 44 ------IRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLKK---V 112 (292)
T ss_pred ------EEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---c
Confidence 11111122357899999996543321 111 22334567889999999999983 22222233333332 5
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+... .++....++.+.. .....+++++||+++.|+++++++|.+.+
T Consensus 113 ~~pvilVlNKiDl~~~--~~~l~~~~~~l~~------------~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 113 KTPVILVLNKIDLVKD--KEELLPLLEELSE------------LMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCEEEEEECCcCCCC--HHHHHHHHHHHHh------------hCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 7899999999999742 2333333333320 11236799999999999999999998765
No 152
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=4.4e-21 Score=141.76 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=102.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
++++|+++|++|+|||||+++|++.......+..+
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~--------------------------------------------- 35 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAG--------------------------------------------- 35 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCC---------------------------------------------
Confidence 36799999999999999999998754221110000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHH-----HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
.+.......+...+..+.+||+||.......... .......+..+|++++|+|++++.+..... .+... ..
T Consensus 36 ~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~-~~-- 111 (174)
T cd01895 36 TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLI-LE-- 111 (174)
T ss_pred CccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHH-Hh--
Confidence 0000000111112345789999997644221111 122334567899999999999876654432 22222 22
Q ss_pred CCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 175 LASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+.|+++++||+|+.+. ...+++.+.++... ......+++++||+++.|++++++++.+.
T Consensus 112 -~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 112 -EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL------------PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc------------ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 56899999999999764 23333333333221 01123689999999999999999998764
No 153
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=3.1e-21 Score=158.12 Aligned_cols=164 Identities=21% Similarity=0.205 Sum_probs=108.3
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.|+|+|.||||||||+|+|++.... ++.+|..+..+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~-------------------------------------- 202 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVR-------------------------------------- 202 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEE--------------------------------------
Confidence 7999999999999999999876542 34445554444441
Q ss_pred cceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECC---ChhhhHhhHHHHHHHHhc-cC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTS---DRERFEESKSELQCLLTD-ES 174 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~---~~~~~~~~~~~~~~~~~~-~~ 174 (249)
+ .....+.++|+||...-. ........++.++++++++++|+|++ +.+.+.....++.++... ..
T Consensus 203 ---------~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~ 272 (390)
T PRK12298 203 ---------V-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK 272 (390)
T ss_pred ---------e-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh
Confidence 0 111248899999975422 22224456778899999999999998 344555554455554331 12
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..++|+++|+||+|+... +++.+.++.+.. ......+++++||+++.|+++++++|.+.+
T Consensus 273 L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~-----------~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 273 LAEKPRWLVFNKIDLLDE---EEAEERAKAIVE-----------ALGWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred hcCCCEEEEEeCCccCCh---HHHHHHHHHHHH-----------HhCCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 246899999999999753 222222222210 000113689999999999999999998765
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=6.5e-21 Score=142.91 Aligned_cols=182 Identities=20% Similarity=0.219 Sum_probs=106.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
+|+|+|.+|||||||+|+|++.......+..... .+..+... .. ..+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~-------------~~~~~~~~---~~--------------~~~~~~ 50 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE-------------TFLDVLKE---ER--------------ERGITI 50 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec-------------ccccCCHH---HH--------------HcCCCe
Confidence 4899999999999999999987655322211100 00000000 00 000011
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
......+......+.+||+||+..+..... ..+..+|++++|+|+++....... ..+... .. .+.|+++
T Consensus 51 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~i~i 119 (189)
T cd00881 51 KSGVATFEWPDRRVNFIDTPGHEDFSSEVI------RGLSVSDGAILVVDANEGVQPQTR-EHLRIA-RE---GGLPIIV 119 (189)
T ss_pred ecceEEEeeCCEEEEEEeCCCcHHHHHHHH------HHHHhcCEEEEEEECCCCCcHHHH-HHHHHH-HH---CCCCeEE
Confidence 111111222245789999999887665544 556789999999999886544322 122222 22 6899999
Q ss_pred EEecCCCCCCCCHHHH----HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 183 LGNKIDKHGAASEEEI----RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 183 v~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++||+|+..+...... .+.++........ ..........+++++||++|.|+++++.+|.+.+
T Consensus 120 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 120 AINKIDRVGEEDLEEVLREIKELLGLIGFISTK---EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred EEECCCCcchhcHHHHHHHHHHHHccccccchh---hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 9999999864333332 2333322100000 0000112357899999999999999999998765
No 155
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=6.7e-21 Score=157.92 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=104.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++|+++|.+|||||||+|+|++..+. .+.+|..+....+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i-------------------------------------- 239 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRI-------------------------------------- 239 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEE--------------------------------------
Confidence 68999999999999999999876543 1223333222221
Q ss_pred ccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
.+.+ ...+.+|||+|..+. ....+.+...+..+..+|++++|+|++++..+..+.. +..++......
T Consensus 240 ---------~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~ 308 (426)
T PRK11058 240 ---------DVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEA-VNTVLEEIDAH 308 (426)
T ss_pred ---------EeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccC
Confidence 0111 125679999997442 3334445555677889999999999999877766532 22333333335
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCcee-EEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE-LFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+..... ..... .... .+ ++++||++|.|+++++++|.+.+
T Consensus 309 ~~pvIiV~NKiDL~~~~~-~~~~~--~~~~-----------------~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 309 EIPTLLVMNKIDMLDDFE-PRIDR--DEEN-----------------KPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred CCCEEEEEEcccCCCchh-HHHHH--HhcC-----------------CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999975311 11111 0011 22 58899999999999999998765
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.9e-21 Score=144.17 Aligned_cols=121 Identities=21% Similarity=0.145 Sum_probs=79.4
Q ss_pred ceEEEEEeCCCchhhhhh-HHHHhhhhccccccceEEEEEECCCh------hhhHhhHHHHHHHHhccC------CCCCc
Q psy871 113 DAIVFLVDTSDRERFEES-KSELQCLLTDESLASSIVFLVDTSDR------ERFEESKSELQCLLTDES------LASCP 179 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~~~d~ii~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~p 179 (249)
...+.+||+||....... ......+...+..+|++++|+|+++. .++.....+..++..... ..+.|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 345789999997432211 11222445567789999999999987 466665555555543221 14799
Q ss_pred EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.......+... .... .....+++++||+++.|++++++++.+.+
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~-~~~~--------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELV-RELA--------------LEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred eEEEEEchhcCchhHHHHHHH-HHHh--------------cCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 999999999976422222210 1111 11236799999999999999999998754
No 157
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=9.8e-22 Score=147.18 Aligned_cols=119 Identities=20% Similarity=0.242 Sum_probs=79.4
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
.....+.++|+||+..|..... ..+..+|++++|+|+.+....+.. +.+... .. .++|+++++||+|+.
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~------~~~~~~D~ailvVda~~g~~~~~~-~~l~~~-~~---~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMI------RGLRQADIAILVVDANDGIQPQTE-EHLKIL-RE---LGIPIIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHH------HHHTTSSEEEEEEETTTBSTHHHH-HHHHHH-HH---TT-SEEEEEETCTSS
T ss_pred ccccceeecccccccceeeccc------ceecccccceeeeecccccccccc-cccccc-cc---cccceEEeeeeccch
Confidence 5667899999999988766655 567899999999999976333322 122222 22 789999999999998
Q ss_pred CCCCHHHHHHHhhhcccccCcccCCCCCCCC-CceeEEEeeeccccchHHHHHHHhhhc
Q psy871 191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSG-RPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.....+...+....+..... ... ..++++++||++|.|+++|++.|.+++
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYG--------ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHhccccc--------cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 32111112222211100000 111 248999999999999999999998876
No 158
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=8.8e-21 Score=139.12 Aligned_cols=165 Identities=24% Similarity=0.333 Sum_probs=103.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+..+|+++|++|||||||+|++++.......+....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-------------------------------------------- 37 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-------------------------------------------- 37 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc--------------------------------------------
Confidence 567999999999999999999987543211110000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
+.......+......+.+|||||.......... .......+..+|++++|+|++++.. ....++.+.+.. .+
T Consensus 38 -~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~ 111 (168)
T cd04163 38 -TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--EGDEFILELLKK---SK 111 (168)
T ss_pred -eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--chHHHHHHHHHH---hC
Confidence 000111111222456889999997654433221 1223355788999999999998722 211233333322 46
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+... .+++.+..+.+. ...+..+++++|++++.|+++++++|.+++
T Consensus 112 ~~~iiv~nK~Dl~~~--~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 112 TPVILVLNKIDLVKD--KEDLLPLLEKLK------------ELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCEEEEEEchhcccc--HHHHHHHHHHHH------------hccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 899999999999742 233333333332 111236899999999999999999998764
No 159
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=9e-21 Score=137.82 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=101.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
.+|+++|++|+|||||++++++.......+..+....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------- 38 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD------------------------------------------- 38 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc-------------------------------------------
Confidence 4799999999999999999987653321111111000
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
.....+...+..+.+|||||...+..... ........+..+|++++|+|++++.+......+ .. ..+.|
T Consensus 39 --~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~------~~~~~ 109 (157)
T cd04164 39 --VIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEIL-EL------PADKP 109 (157)
T ss_pred --eEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHH-Hh------hcCCC
Confidence 00011111234688999999766543321 122344566789999999999987666554321 11 26799
Q ss_pred EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++|+||+|+.+.... ... ....+++++||+++.|+++++++|.+.+
T Consensus 110 vi~v~nK~D~~~~~~~-----~~~-----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 110 IIVVLNKSDLLPDSEL-----LSL-----------------LAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEEEEEchhcCCcccc-----ccc-----------------cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999764222 111 1236899999999999999999998865
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=1.1e-20 Score=143.20 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=95.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+++|++|||||||+|+|++..+... ...+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~t------------------------------------------ 43 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVG-KRPGVT------------------------------------------ 43 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-CCCcee------------------------------------------
Confidence 3567999999999999999999987653311 000100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhh--------hhHHHHhhhh-ccccccceEEEEEECCChhhhH---------
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE--------ESKSELQCLL-TDESLASSIVFLVDTSDRERFE--------- 160 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~--------~~~~~~~~~~-~~~~~~d~ii~v~d~~~~~~~~--------- 160 (249)
.......+ ..+.+|||||..... ..+..+..++ .....++++++|+|.++...+.
T Consensus 44 ---~~~~~~~~----~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~ 116 (201)
T PRK04213 44 ---RKPNHYDW----GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEI 116 (201)
T ss_pred ---eCceEEee----cceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCc
Confidence 00000000 147899999942211 1122222222 2445678999999987532210
Q ss_pred hhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 161 ESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
.....+...+.. .++|+++|+||+|+.+.. .+...++.+...... .......+++++||++| |++++
T Consensus 117 ~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 117 PIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYP--------PWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred HHHHHHHHHHHH---cCCCeEEEEECccccCcH-HHHHHHHHHHhcCCc--------cccccCCcEEEEecccC-CHHHH
Confidence 011122333322 579999999999997542 223333333322000 00001136899999999 99999
Q ss_pred HHHHhhhc
Q psy871 241 FRWLANYI 248 (249)
Q Consensus 241 ~~~l~~~i 248 (249)
+++|.+.+
T Consensus 184 ~~~l~~~~ 191 (201)
T PRK04213 184 KEAIRKRL 191 (201)
T ss_pred HHHHHHhh
Confidence 99998865
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=5.3e-21 Score=139.10 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCchhhhh-hHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 113 DAIVFLVDTSDRERFEE-SKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~-~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
+..+.+|||||+..+.. ... ........+..+|++++|+|+.+..+.... .+.+++.. .+.|+++|+||+|+.
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~ 118 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNI 118 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccC
Confidence 35688999999887654 111 222334567889999999999875444332 33344333 469999999999997
Q ss_pred CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.... ....+.... ..+++++||++|.|+++++++|.+++
T Consensus 119 ~~~~---~~~~~~~~~----------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 119 KEED---EAAEFYSLG----------------FGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred ChHH---HHHHHHhcC----------------CCCeEEEecccCCCHHHHHHHHHhhC
Confidence 6421 122222222 12689999999999999999998864
No 162
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=1.3e-20 Score=141.54 Aligned_cols=124 Identities=17% Similarity=0.229 Sum_probs=93.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+||+++|.+|+|||||++++..+.+. .+.||++....... +.+. ..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~-------~~~~-~~------------------------- 47 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKH-------HTYK-EG------------------------- 47 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEE-------EEEc-CC-------------------------
Confidence 48999999999999999999988765 45566653322110 0000 00
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-------
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE------- 173 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~------- 173 (249)
...+....+.+||++|++++...+. .++..+|++++|+|++++.+|..+..|+.++....
T Consensus 48 -------~~~~~~~~l~IwDtaG~e~~~~l~~------~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~ 114 (202)
T cd04102 48 -------TPEEKTFFVELWDVGGSESVKSTRA------VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLL 114 (202)
T ss_pred -------CCCCcEEEEEEEecCCchhHHHHHH------HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccc
Confidence 0112335688999999999988877 67889999999999999999999998988886531
Q ss_pred -----------CCCCCcEEEEEecCCCCC
Q psy871 174 -----------SLASCPVLILGNKIDKHG 191 (249)
Q Consensus 174 -----------~~~~~p~ivv~nK~Dl~~ 191 (249)
...+.|+++|+||+|+.+
T Consensus 115 ~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 115 VTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred cccccccccccCCCCceEEEEEECccchh
Confidence 124689999999999965
No 163
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=1.7e-20 Score=141.25 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=70.1
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
.....+.+|||||+++|..... .+++.+|++++|+|+++.. +.....++.... . .++|+++++||+|+.
T Consensus 62 ~~~~~~~l~DtpG~~~~~~~~~------~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~-~---~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 62 YKDTKINIVDTPGHADFGGEVE------RVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-E---LGLKPIVVINKIDRP 130 (194)
T ss_pred ECCEEEEEEECCCcHHHHHHHH------HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH-H---cCCCEEEEEECCCCC
Confidence 3456789999999998877666 5678999999999998742 222222333322 2 578999999999997
Q ss_pred CCCCH---HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871 191 GAASE---EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
..... +++.+.++.... ......++++++||++|.|++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 131 DARPEEVVDEVFDLFIELGA----------TEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred CCCHHHHHHHHHHHHHHhCC----------ccccCccCEEEeehhcccccc
Confidence 54222 233333322220 011124789999999997773
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=6.6e-21 Score=159.68 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=103.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+++|++|||||||+|+|++.+.....+..+.+..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d---------------------------------------- 252 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRD---------------------------------------- 252 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccc----------------------------------------
Confidence 4557999999999999999999987654321111111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
.....+...+..+.+|||||...+....+. .......+..+|++++|+|++++.++.... .+.. ..
T Consensus 253 -----~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~-~l~~------~~ 320 (449)
T PRK05291 253 -----VIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDE-ILEE------LK 320 (449)
T ss_pred -----cEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHH-HHHh------cC
Confidence 111111112345889999998754433221 233456788999999999999987666432 2222 26
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+..... .. ...+++++||++|.|+++++++|.+.+
T Consensus 321 ~~piiiV~NK~DL~~~~~~~------~~-----------------~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 321 DKPVIVVLNKADLTGEIDLE------EE-----------------NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred CCCcEEEEEhhhccccchhh------hc-----------------cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 78999999999997532211 11 125789999999999999999998764
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=9.4e-21 Score=137.67 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=74.6
Q ss_pred EEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH
Q psy871 118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE 197 (249)
Q Consensus 118 v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 197 (249)
+|||||...... +........+..+|++++|+|+++..++... ++..+ ..++|+++++||+|+.+. ..+.
T Consensus 41 ~iDtpG~~~~~~--~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~--~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~ 110 (158)
T PRK15467 41 DIDTPGEYFSHP--RWYHALITTLQDVDMLIYVHGANDPESRLPA--GLLDI-----GVSKRQIAVISKTDMPDA-DVAA 110 (158)
T ss_pred cccCCccccCCH--HHHHHHHHHHhcCCEEEEEEeCCCcccccCH--HHHhc-----cCCCCeEEEEEccccCcc-cHHH
Confidence 599999643221 1222333457889999999999988765332 33332 146899999999998653 4555
Q ss_pred HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 198 IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.++++... ...+++++||++|+|++++++++.+.+
T Consensus 111 ~~~~~~~~~---------------~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 111 TRKLLLETG---------------FEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHHHHHcC---------------CCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 555555443 125899999999999999999998865
No 166
>KOG0097|consensus
Probab=99.86 E-value=1.4e-20 Score=127.41 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=123.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+|-.++|+.|+|||+|+..++...+-.-.| |++...++-.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtri--------------------------------------- 52 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--------------------------------------- 52 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeE---------------------------------------
Confidence 477899999999999999998766553333 4443333321
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
....+....+.+|||.|+++|....+ ++|+.+...++|+|+++..++.++..|+.... ....++..+
T Consensus 53 ------ievsgqkiklqiwdtagqerfravtr------syyrgaagalmvyditrrstynhlsswl~dar-~ltnpnt~i 119 (215)
T KOG0097|consen 53 ------IEVSGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVI 119 (215)
T ss_pred ------EEecCcEEEEEEeecccHHHHHHHHH------HHhccccceeEEEEehhhhhhhhHHHHHhhhh-ccCCCceEE
Confidence 11234456799999999999999999 89999999999999999999999888887753 334477889
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++++||.|+.. +++-++..++.+.-+ ..+.++||++|.|+++.|-.-++.
T Consensus 120 ~lignkadle~qrdv~yeeak~faeeng-----------------l~fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 120 FLIGNKADLESQRDVTYEEAKEFAEENG-----------------LMFLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred EEecchhhhhhcccCcHHHHHHHHhhcC-----------------eEEEEecccccCcHHHHHHHHHHH
Confidence 99999999965 566788888777655 889999999999999988765554
No 167
>KOG1489|consensus
Probab=99.86 E-value=5.2e-21 Score=146.76 Aligned_cols=161 Identities=21% Similarity=0.257 Sum_probs=118.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.-+++||.|||||||||++|+..... +.++|+.+..+++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~------------------------------------- 239 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVN------------------------------------- 239 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceee-------------------------------------
Confidence 36899999999999999999887644 66677776666551
Q ss_pred ccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHh-cc
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLT-DE 173 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~-~~ 173 (249)
++. -..+.+-|.||... ....+..+..|+++++++..+++|+|.+.+ ..++.++..+.++-. +.
T Consensus 240 ----------ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 240 ----------YDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred ----------ccc-cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 111 11288899999665 444566789999999999999999999998 666665544444422 44
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+...|.++|+||+|+.+. ....++++.+... ...++++||++++|++++++.|.+.
T Consensus 309 ~L~~rp~liVaNKiD~~ea-e~~~l~~L~~~lq----------------~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 309 GLADRPALIVANKIDLPEA-EKNLLSSLAKRLQ----------------NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred hhccCceEEEEeccCchhH-HHHHHHHHHHHcC----------------CCcEEEeeeccccchHHHHHHHhhc
Confidence 5578999999999998642 1222345455443 1369999999999999999988764
No 168
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.86 E-value=3.5e-20 Score=134.68 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=100.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
++||+++|++|||||||++++....+. ...++.+......
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 41 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTT--------------------------------------- 41 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEE---------------------------------------
Confidence 369999999999999999999876632 1111111111000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh-hhhHhhH-HHHHHHHhccCCCC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESK-SELQCLLTDESLAS 177 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||+..+..... .....++.++.++|.... .++.... .+...+.... ..+
T Consensus 42 ------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~ 108 (161)
T TIGR00231 42 ------VIEEDGKTYKFNLLDTAGQEDYRAIRR------LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESN 108 (161)
T ss_pred ------EEEECCEEEEEEEEECCCcccchHHHH------HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccC
Confidence 001111125688999999887766655 334456677777777665 4554433 3444443322 238
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
.|+++++||+|+......++....+.... ..+++++||++|.|+++++++|.
T Consensus 109 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 109 VPIILVGNKIDLRDAKLKTHVAFLFAKLN----------------GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CcEEEEEEcccCCcchhhHHHHHHHhhcc----------------CCceEEeecCCCCCHHHHHHHhh
Confidence 89999999999976543444444444432 25699999999999999999875
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=3.9e-20 Score=140.03 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=73.8
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
..+.+|||||++.+... ++..+..+|++++|+|++++.........+..+ ... ...|+++++||+|+.+..
T Consensus 83 ~~i~~iDtPG~~~~~~~------~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 83 RHVSFVDCPGHEILMAT------MLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cEEEEEECCChHHHHHH------HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHH
Confidence 57899999998766443 336677899999999999742111112223222 111 235799999999997532
Q ss_pred CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 194 SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+..+.++.... .......+++++||++|.|+++++++|.+.+
T Consensus 154 ~~~~~~~~i~~~~~----------~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 154 QALENYEQIKKFVK----------GTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHHh----------ccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 22222222221110 0111236899999999999999999998865
No 170
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=2.5e-20 Score=155.38 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=103.6
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
-.+.++|+++|+||||||||+|+|++.......+..+.+.
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTr---------------------------------------- 239 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTR---------------------------------------- 239 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEE----------------------------------------
Confidence 3566899999999999999999998765332111111111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
......+...+..+.+|||||...+....+. ......+++.+|++++|+|++++.++... ++..+. .
T Consensus 240 -----d~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~ 308 (442)
T TIGR00450 240 -----DVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN----K 308 (442)
T ss_pred -----EEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh----h
Confidence 1111111122345789999998765443321 13345677899999999999998776654 444432 2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+... +...+.+... .+++++||++ .|++++++.|.+.+
T Consensus 309 ~~~piIlV~NK~Dl~~~----~~~~~~~~~~-----------------~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 309 SKKPFILVLNKIDLKIN----SLEFFVSSKV-----------------LNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred CCCCEEEEEECccCCCc----chhhhhhhcC-----------------CceEEEEEec-CCHHHHHHHHHHHH
Confidence 57899999999999653 1222222222 5689999998 68888888887654
No 171
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=2.5e-20 Score=135.75 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=75.4
Q ss_pred eEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 114 AIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+.+|||||+..+.... .....++.. +.+|++++|+|++++..... ++..+.. .++|+++|+||+|+.
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~---~~~~~~~----~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIVNVVDATNLERNLY---LTLQLLE----LGLPVVVALNMIDEA 114 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEEEEeeCCcchhHHH---HHHHHHH----cCCCEEEEEehhhhc
Confidence 468899999987665421 111222222 68999999999998654332 3333322 479999999999997
Q ss_pred CCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 191 GAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
+... ..+...+.+... .+++++||++|.|+++++++|.+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~-----------------~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 115 EKRGIKIDLDKLSELLG-----------------VPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred ccccchhhHHHHHHhhC-----------------CCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 6422 222333333333 68999999999999999999988754
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.85 E-value=4.8e-20 Score=158.11 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=106.8
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+..++++|+++|++++|||||+++|.+.++.... +.+..
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~---------------------------------------- 122 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQ---------------------------------------- 122 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceee----------------------------------------
Confidence 3467899999999999999999999876554211 00000
Q ss_pred CCcccceeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 96 PTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
.... ..+.. ....+.+|||||++.|...+. +++..+|++++|+|+++....+... .+... .
T Consensus 123 -----~ig~--~~v~~~~~~~i~~iDTPGhe~F~~~r~------rga~~aDiaILVVda~dgv~~qT~e-~i~~~-~--- 184 (587)
T TIGR00487 123 -----HIGA--YHVENEDGKMITFLDTPGHEAFTSMRA------RGAKVTDIVVLVVAADDGVMPQTIE-AISHA-K--- 184 (587)
T ss_pred -----cceE--EEEEECCCcEEEEEECCCCcchhhHHH------hhhccCCEEEEEEECCCCCCHhHHH-HHHHH-H---
Confidence 0000 00111 112688999999999988776 6678899999999998743222221 22222 1
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
..++|+++++||+|+... ..+++.+.++..+... .......+++++||++|+|++++++++..
T Consensus 185 ~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~--------~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 185 AANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVP--------EDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhH--------HhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 257999999999999753 4455555554332000 00112368999999999999999998854
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=3.2e-20 Score=137.96 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=92.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCC-CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|+|||||+|+|++..+ ....++.+.+....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 58 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN------------------------------------- 58 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE-------------------------------------
Confidence 6778999999999999999999987642 22222222111100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL 170 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~ 170 (249)
.+. . +..+.+|||||.... .........++.....++++++|+|++++.+..+. .+..++
T Consensus 59 ------~~~--~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~ 125 (179)
T TIGR03598 59 ------FFE--V---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWL 125 (179)
T ss_pred ------EEE--e---CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHH
Confidence 000 0 125889999995421 11111222334444457899999999885444433 222333
Q ss_pred hccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871 171 TDESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
.. .+.|+++++||+|+...... +++++.++.. ...++++++||++|+|++
T Consensus 126 ~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 126 RE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---------------cCCCceEEEECCCCCCCC
Confidence 33 57999999999999753222 2222222221 123589999999999974
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=5.8e-20 Score=138.15 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=74.0
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
...+.+|||||+..+. ..+......+|++++|+|+++......... +. +... .+.|+++++||+|+...
T Consensus 67 ~~~~~i~DtpG~~~~~------~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~---~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 67 NLQITLVDCPGHASLI------RTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI---LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred CceEEEEECCCcHHHH------HHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH---cCCCEEEEEECcccCCH
Confidence 5578999999986432 233355677899999999988544333221 11 2222 36799999999999753
Q ss_pred CCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 ASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+ ++.+.+.... .......++++++||++|.|+++++++|.++|
T Consensus 136 ~~~~~~~~~~~~~l~~~~----------~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 136 EERERKIEKMKKKLQKTL----------EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHH----------HhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2222 2222221110 00111347899999999999999999998865
No 175
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=3.8e-20 Score=128.83 Aligned_cols=140 Identities=20% Similarity=0.288 Sum_probs=101.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
||+++|++|+|||||+++|.+.+..+.. +.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--------------------------------------------------Tq 32 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--------------------------------------------------TQ 32 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--------------------------------------------------cc
Confidence 8999999999999999999664433211 00
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
.+. ..-.++|||| +|-+.......++.....+|.+++|.|++++.....- .+... .++|+|-
T Consensus 33 -----~i~---~~~~~IDTPG--EyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP--~fa~~------f~~pvIG 94 (143)
T PF10662_consen 33 -----AIE---YYDNTIDTPG--EYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP--GFASM------FNKPVIG 94 (143)
T ss_pred -----eeE---ecccEEECCh--hheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc--hhhcc------cCCCEEE
Confidence 000 1112489998 5666677777777888899999999999996443221 11121 5689999
Q ss_pred EEecCCCC-CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 183 LGNKIDKH-GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 183 v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
|+||+|+. ++...+...++++..+ .-++|++|+.+|+|+++|.++|.+
T Consensus 95 VITK~Dl~~~~~~i~~a~~~L~~aG----------------~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 95 VITKIDLPSDDANIERAKKWLKNAG----------------VKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred EEECccCccchhhHHHHHHHHHHcC----------------CCCeEEEECCCCcCHHHHHHHHhC
Confidence 99999998 4446667777777765 125799999999999999999863
No 176
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.84 E-value=1.6e-19 Score=130.18 Aligned_cols=112 Identities=25% Similarity=0.309 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
...+.+||+||...+..... .....+|++++|+|++++.++.....++..........+.|+++++||+|+...
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRR------LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEEecCChHHHHhHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 45789999999887665544 556789999999999999888877665333333444578999999999999775
Q ss_pred CCHHHHH--HHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 193 ASEEEIR--QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 193 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
...+... ...... ...+++++|++++.|+++++++|.+
T Consensus 118 ~~~~~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 118 RVVSEEELAEQLAKE----------------LGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred cchHHHHHHHHHHhh----------------cCCcEEEEecCCCCChHHHHHHHhC
Confidence 4433321 111111 2378999999999999999999864
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=1.1e-19 Score=158.08 Aligned_cols=168 Identities=20% Similarity=0.292 Sum_probs=108.8
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+..++++|+++|++++|||||+++|+...+.... +.+....+..
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~----------------------------------- 284 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAY----------------------------------- 284 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceE-----------------------------------
Confidence 4568899999999999999999999876543210 0000000000
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
.-.+ .....+..+.+|||||++.|...+. .++..+|++++|+|+++....+... .+..+ . .
T Consensus 285 ------~v~~--~~~~~~~kItfiDTPGhe~F~~mr~------rg~~~aDiaILVVDA~dGv~~QT~E-~I~~~-k---~ 345 (742)
T CHL00189 285 ------EVEF--EYKDENQKIVFLDTPGHEAFSSMRS------RGANVTDIAILIIAADDGVKPQTIE-AINYI-Q---A 345 (742)
T ss_pred ------EEEE--EecCCceEEEEEECCcHHHHHHHHH------HHHHHCCEEEEEEECcCCCChhhHH-HHHHH-H---h
Confidence 0000 0112346789999999999887776 6678899999999998743333221 22222 2 2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.++|+++++||+|+... ..+++.+.+....... +.....++++++||++|.|+++++++|...
T Consensus 346 ~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~--------e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 346 ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIP--------EKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred cCceEEEEEECCCcccc-CHHHHHHHHHHhccch--------HhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 57999999999999763 3344444443321000 001124789999999999999999998754
No 178
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.6e-19 Score=135.08 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=94.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+++|+++|++++|||||+++|+..... . + +....+....... ..+. ..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~-----~----g---------~~~~~~~~~~d~~----------~~E~--~rg~ 51 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAK-----K----G---------GAKFKKYDEIDKA----------PEEK--ARGI 51 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHh-----c----c---------cccccccccccCC----------hhhh--hcCc
Confidence 578999999999999999999764100 0 0 0000000000000 0000 1112
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP- 179 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p- 179 (249)
+.......++..+..+.++||||+..|..... ..+..+|++++|+|+.....-+. .+.+. ++.. .++|
T Consensus 52 Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~------~~~~~~D~~ilVvda~~g~~~~~-~~~~~-~~~~---~~~~~ 120 (195)
T cd01884 52 TINTAHVEYETANRHYAHVDCPGHADYIKNMI------TGAAQMDGAILVVSATDGPMPQT-REHLL-LARQ---VGVPY 120 (195)
T ss_pred cEEeeeeEecCCCeEEEEEECcCHHHHHHHHH------HHhhhCCEEEEEEECCCCCcHHH-HHHHH-HHHH---cCCCc
Confidence 22222233444566789999999876644443 66788999999999987432221 11222 2222 5676
Q ss_pred EEEEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871 180 VLILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 237 (249)
+++++||+|+..+.. . +++.+.+..+. +....++++++||++|.|.
T Consensus 121 iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g------------~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 121 IVVFLNKADMVDDEELLELVEMEVRELLSKYG------------FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc------------ccccCCeEEEeeCccccCC
Confidence 779999999974211 1 23334444333 2223589999999999874
No 179
>PLN00023 GTP-binding protein; Provisional
Probab=99.83 E-value=1.3e-19 Score=142.59 Aligned_cols=151 Identities=21% Similarity=0.296 Sum_probs=106.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+...+||+++|..|||||||++++.++.+. .+.||++...... .+.+ +.... +
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik-------~I~~-~~~~~--~---------------- 71 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVK-------HITY-GSPGS--S---------------- 71 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEE-------EEEE-CCccc--c----------------
Confidence 567889999999999999999999988775 4567776543221 1111 10000 0
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-- 174 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-- 174 (249)
.... .. -.+....+.+||++|+++|...+. .++..++++|+|+|+++..+|..+..|+.++.....
T Consensus 72 ----~~~i-k~-d~~k~v~LqIWDTAGqErfrsL~~------~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s 139 (334)
T PLN00023 72 ----SNSI-KG-DSERDFFVELWDVSGHERYKDCRS------LFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFS 139 (334)
T ss_pred ----cccc-cc-cCCceEEEEEEECCCChhhhhhhH------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccc
Confidence 0000 00 012235689999999999998888 678899999999999999999999988888865421
Q ss_pred ---------CCCCcEEEEEecCCCCCC--------CCHHHHHHHhhhcc
Q psy871 175 ---------LASCPVLILGNKIDKHGA--------ASEEEIRQYFGLYG 206 (249)
Q Consensus 175 ---------~~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~~~~~ 206 (249)
...+|+++|+||+|+... +..++.+++++..+
T Consensus 140 ~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 140 APLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQG 188 (334)
T ss_pred cccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcC
Confidence 125899999999999653 23567777776654
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.83 E-value=2e-19 Score=135.77 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=100.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCC-CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
...++|+++|++|||||||+++|++..+ ....++.+......
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 64 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLIN------------------------------------- 64 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEE-------------------------------------
Confidence 3557999999999999999999987642 22222222111000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL 170 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~ 170 (249)
.+. .+..+.+|||||.... .........++......+++++|+|.+++...... ++.+.+
T Consensus 65 ----------~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l 131 (196)
T PRK00454 65 ----------FFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWL 131 (196)
T ss_pred ----------EEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHH
Confidence 000 1246899999995321 11112223344444556788899998875443321 233333
Q ss_pred hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.. .++|+++++||+|+.+....+...+.++... .....+++++||+++.|++++++.|.+.+
T Consensus 132 ~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-------------~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 132 KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-------------KFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-------------HhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 32 5789999999999976433333332232221 00136899999999999999999998765
No 181
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.83 E-value=1.4e-19 Score=138.22 Aligned_cols=201 Identities=17% Similarity=0.117 Sum_probs=107.3
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHH-Hhc-CCccc--ccCCc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHM-LKD-DRLAQ--PVPTL 98 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~-l~~-~~~~~--~~~~~ 98 (249)
||+++|++++|||||+++|+.+.+... .+.....+ ......-..|+++.+.. ... ..... .++ .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~--------~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~-~ 68 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNG---RGKARLNL--------FRHKHEVESGRTSSVSNEILGFDSDGEVVNYP-D 68 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCC---CCeEEeeh--------hhhhhhhhcCchhhhhhhhcccCCCCceecCC-C
Confidence 689999999999999999987655421 11000000 00000111244433222 111 10000 000 0
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccc--cccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE--SLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+...+...++..+..+.++|+||++.|..... ..+ ..+|++++|+|+.+...-.+. .+..++.. .
T Consensus 69 ~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~------~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~---~ 137 (224)
T cd04165 69 NHLSESDIEICEKSSKLVTFIDLAGHERYLKTTL------FGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALA---L 137 (224)
T ss_pred CccccccceeeeeCCcEEEEEECCCcHHHHHHHH------HhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHH---c
Confidence 0111111233445567899999999987754432 233 368999999999875432221 22233333 6
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcc------------cCC-CCCCCCCceeEEEeeeccccchHHHHHH
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKV------------ATP-RSEMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
++|+++|+||+|+.++...++....+...-...... ... .........|+|.+||++|.|++++.+.
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 789999999999876422322222222211100000 000 0111223469999999999999999998
Q ss_pred Hhh
Q psy871 244 LAN 246 (249)
Q Consensus 244 l~~ 246 (249)
|..
T Consensus 218 L~~ 220 (224)
T cd04165 218 LNL 220 (224)
T ss_pred HHh
Confidence 864
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.83 E-value=2.6e-19 Score=135.31 Aligned_cols=174 Identities=21% Similarity=0.258 Sum_probs=111.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
+.|+++|++|||||||+++|....+....++.......+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~---------------------------------------- 40 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFI---------------------------------------- 40 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEE----------------------------------------
Confidence 4799999999999999999998765543333221111110
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcccccc-ceEEEEEECCCh-hhhHhhHHHHHHHHhccC--CCC
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLA-SSIVFLVDTSDR-ERFEESKSELQCLLTDES--LAS 177 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~ 177 (249)
.........+.+||+||++++..... .+++.+ +++|+|+|+++. ..+.....++..++.... ..+
T Consensus 41 -----~~~~~~~~~~~l~D~pG~~~~~~~~~------~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~ 109 (203)
T cd04105 41 -----LNSEGKGKKFRLVDVPGHPKLRDKLL------ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNK 109 (203)
T ss_pred -----eecCCCCceEEEEECCCCHHHHHHHH------HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCC
Confidence 00002235688999999998754444 556666 999999999997 667776666666554321 257
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhh----cccccCccc-------------------CCCCCCCCCceeEEEeeeccc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGL----YGLTTGKVA-------------------TPRSEMSGRPIELFMCSVLMR 234 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~~~~~~~~~~~~~~~Sa~~g 234 (249)
+|+++++||+|+......+.+.+.+.. +........ .+.-......+.++++|++.+
T Consensus 110 ~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~ 189 (203)
T cd04105 110 IPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVD 189 (203)
T ss_pred CCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecC
Confidence 999999999999876555444333321 111111000 000001124588999999987
Q ss_pred c-chHHHHHHHhh
Q psy871 235 Q-GYGDGFRWLAN 246 (249)
Q Consensus 235 ~-gv~~l~~~l~~ 246 (249)
. |++++.+|+.+
T Consensus 190 ~~~~~~~~~w~~~ 202 (203)
T cd04105 190 GGGIDGWEEWIDE 202 (203)
T ss_pred CCChHhHHHHHhh
Confidence 6 69999999875
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.83 E-value=1.8e-19 Score=155.36 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=79.9
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
....+.+|||||+..|..... .++..+|++++|+|+++....+....+.. ... .++|+++|+||+|+..
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~------~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVS------RSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPS 136 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHH------HHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCc
Confidence 346789999999999877666 66788999999999999766665543332 222 4789999999999875
Q ss_pred CCCHHHH-HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AASEEEI-RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.. .++. .+..+.+. ....+++++||++|.|+++++++|.+.+
T Consensus 137 ~~-~~~~~~el~~~lg--------------~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 137 AD-PERVKKEIEEVIG--------------LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred cC-HHHHHHHHHHHhC--------------CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 32 2222 22222222 0113589999999999999999998764
No 184
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=2.7e-19 Score=132.11 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=95.4
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
+.+....+.+|||+|++++...+. .+++.+|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|
T Consensus 24 ~~~~~v~l~iwDt~G~e~~~~~~~------~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~D 96 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQERFRSLIP------SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTD 96 (176)
T ss_pred ECCEEEEEEEEECCChHHhhhccH------HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcc
Confidence 345567799999999999888777 67789999999999999999999988888876543 25789999999999
Q ss_pred CCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 189 KHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 189 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.+ ....++..+..+... ..+++|||++|.|++++|++|.+.+
T Consensus 97 L~~~~~v~~~e~~~~~~~~~-----------------~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 97 LGDLRKVTYEEGMQKAQEYN-----------------TMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred cccccCCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 964 345666666555444 6799999999999999999998764
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.82 E-value=2.2e-19 Score=157.53 Aligned_cols=164 Identities=21% Similarity=0.289 Sum_probs=106.2
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+..|+++|+++|++++|||||+++|...++.... . .|.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e-~------------------------~GIT---------------- 324 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE-A------------------------GGIT---------------- 324 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccc-c------------------------Ccee----------------
Confidence 3578899999999999999999999765543110 0 0000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
.+... ..+...+..+.+|||||++.|...+. +++..+|++++|+|+++....+... .+... ...
T Consensus 325 ---~~iga--~~v~~~~~~ItfiDTPGhe~F~~m~~------rga~~aDiaILVVdAddGv~~qT~e-~i~~a----~~~ 388 (787)
T PRK05306 325 ---QHIGA--YQVETNGGKITFLDTPGHEAFTAMRA------RGAQVTDIVVLVVAADDGVMPQTIE-AINHA----KAA 388 (787)
T ss_pred ---eeccE--EEEEECCEEEEEEECCCCccchhHHH------hhhhhCCEEEEEEECCCCCCHhHHH-HHHHH----Hhc
Confidence 00000 00111235688999999999987776 6678899999999998842222211 22222 126
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
++|+++++||+|+... ..+.+...+...... .+.....++++++||++|.|+++++++|..
T Consensus 389 ~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~--------~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 389 GVPIIVAINKIDKPGA-NPDRVKQELSEYGLV--------PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCcEEEEEECcccccc-CHHHHHHHHHHhccc--------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 7999999999999653 334444433322100 001113478999999999999999999864
No 186
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=5.1e-20 Score=154.29 Aligned_cols=185 Identities=19% Similarity=0.172 Sum_probs=103.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++++|+++|++++|||||+++|+...-........ .+. ... ...|+.++-.++..+...+. ...
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~----~~~-----~~~-----~~~g~~~~~~~~~~D~~~~E-r~r 68 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIE----ELR-----EEA-----KEKGKESFKFAWVMDRLKEE-RER 68 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHH----HHH-----HHH-----HhcCCcccchhhhhccCHhH-hhc
Confidence 567899999999999999999998543321111000 000 000 00111111111111111110 023
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC-
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS- 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (249)
+.+.+.....++..+..+.+|||||++.|..... ..+..+|++++|+|+++..++.....+...++.. .+
T Consensus 69 G~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~------~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~ 139 (425)
T PRK12317 69 GVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMI------TGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGI 139 (425)
T ss_pred CccceeeeEEEecCCeEEEEEECCCcccchhhHh------hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCC
Confidence 3344444445555677899999999977654333 4467899999999998742222211122222222 23
Q ss_pred CcEEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 178 CPVLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
.|+++++||+|+.+... .+++.++++... .....++++++||++|.|+++
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g------------~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVG------------YKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhC------------CCcCcceEEEeecccCCCccc
Confidence 46999999999975211 123333333332 112247899999999999987
No 187
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.82 E-value=3.4e-19 Score=136.79 Aligned_cols=176 Identities=23% Similarity=0.196 Sum_probs=112.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++..||+++|++|||||||+++|.+..+.. ..||++.......
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~------------------------------------ 46 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT------------------------------------ 46 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEE------------------------------------
Confidence 455899999999999999999999887773 3334332111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~ 176 (249)
. ........+.+|||+|++++...+. .++..++++++|+|.+...++.. ...|..++... ...
T Consensus 47 ------~---~~~~~~~~~~~~Dt~gq~~~~~~~~------~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~-~~~ 110 (219)
T COG1100 47 ------I---EPYRRNIKLQLWDTAGQEEYRSLRP------EYYRGANGILIVYDSTLRESSDELTEEWLEELREL-APD 110 (219)
T ss_pred ------E---EeCCCEEEEEeecCCCHHHHHHHHH------HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHh-CCC
Confidence 0 0000145688999999999999988 88899999999999999555544 45455554433 224
Q ss_pred CCcEEEEEecCCCCCCCCHHH-HHHHhh-hcccccCcccCCCCCCCCCceeEEEeeec--cccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEE-IRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVL--MRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~g~gv~~l~~~l~~~i 248 (249)
..|+++++||+|+........ +.+... ... .................++++|++ .+.++++++..+.+.+
T Consensus 111 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 111 DVPILLVGNKIDLFDEQSSSEEILNQLNREVV--LLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred CceEEEEecccccccchhHHHHHHhhhhcCcc--hhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 699999999999987422111 111100 000 000000000000011338999999 9999999998887654
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.82 E-value=2.9e-19 Score=153.89 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccCCCCCc-EEEEEecCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDESLASCP-VLILGNKID 188 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 188 (249)
+..+.+||+||++.|..... .++..+|++++|+|+++. .+...+ . ++.. .++| +++++||+|
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~------~g~~~aD~aILVVDa~~G~~~qT~ehl----~-il~~---lgi~~iIVVlNK~D 114 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAI------AGGGGIDAALLVVDADEGVMTQTGEHL----A-VLDL---LGIPHTIVVITKAD 114 (581)
T ss_pred CEEEEEEECCCHHHHHHHHH------hhhccCCEEEEEEECCCCCcHHHHHHH----H-HHHH---cCCCeEEEEEECCC
Confidence 35789999999988765544 677889999999999983 333322 2 2222 4677 999999999
Q ss_pred CCCCCCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 189 KHGAASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 189 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.+....+ ++.++++... . ....+++++||++|.|++++++.|.+.+
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~------------~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYI------------F-LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC------------C-CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 98643222 2333333221 0 0137899999999999999999887654
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=5.6e-19 Score=155.72 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=103.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
|+..+|+++|.||+|||||+|+|++.+.. ..+..+.+.+..
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k-------------------------------------- 41 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERK-------------------------------------- 41 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeE--------------------------------------
Confidence 45679999999999999999999875432 111122111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhh------HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES------KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 172 (249)
...+...+..+.++|+||..++... .+......-....+|++++|+|+++.+.... +..++. +
T Consensus 42 -------~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~---l~~ql~-e 110 (772)
T PRK09554 42 -------EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLL-E 110 (772)
T ss_pred -------EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHH---HHHHHH-H
Confidence 1112334567899999998876532 1111111111247899999999998654332 223332 2
Q ss_pred cCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 173 ESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.++|+++++||+|+.+. ....+.++..+..+ ++++++||++|.|++++.+.+.+.
T Consensus 111 ---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG-----------------~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 111 ---LGIPCIVALNMLDIAEKQNIRIDIDALSARLG-----------------CPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred ---cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC-----------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence 57999999999998643 22334444444444 789999999999999999988664
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=1.9e-19 Score=154.23 Aligned_cols=185 Identities=19% Similarity=0.196 Sum_probs=103.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.|++.|+++|++++|||||+++|++..+....+ +.....+ .......+... +.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~--ggiTq~i-------G~~~v~~~~~~------------------~~ 54 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREA--GGITQHI-------GATEIPMDVIE------------------GI 54 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccC--Cceeccc-------CeeEeeecccc------------------cc
Confidence 468899999999999999999999876542211 0000011 00000000000 00
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDESL 175 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~ 175 (249)
.........+......+.+|||||++.|...+. .++..+|++++|+|+++. .++..+ . ++..
T Consensus 55 -~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~------~~~~~aD~~IlVvD~~~g~~~qt~e~i----~-~l~~--- 119 (590)
T TIGR00491 55 -CGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRK------RGGALADLAILIVDINEGFKPQTQEAL----N-ILRM--- 119 (590)
T ss_pred -ccccccccccccccCcEEEEECCCcHhHHHHHH------HHHhhCCEEEEEEECCcCCCHhHHHHH----H-HHHH---
Confidence 000000000111112488999999999988776 567899999999999973 333322 2 2222
Q ss_pred CCCcEEEEEecCCCCCCCCH--------------HHHHH----Hhh----hcccccCcccC--CCCCCCCCceeEEEeee
Q psy871 176 ASCPVLILGNKIDKHGAASE--------------EEIRQ----YFG----LYGLTTGKVAT--PRSEMSGRPIELFMCSV 231 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~--------------~~~~~----~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa 231 (249)
.+.|+++++||+|+...... +++.+ .+. .+. ..+.... ..........+++++||
T Consensus 120 ~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~-~~G~~~e~~~~i~~~~~~v~iVpVSA 198 (590)
T TIGR00491 120 YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLH-EEGFEAERFDRVTDFTKTVAIIPISA 198 (590)
T ss_pred cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcCccHHhhhhhhhcCCCceEEEeec
Confidence 57899999999999742110 11110 000 000 0000000 00001223589999999
Q ss_pred ccccchHHHHHHHhh
Q psy871 232 LMRQGYGDGFRWLAN 246 (249)
Q Consensus 232 ~~g~gv~~l~~~l~~ 246 (249)
++|+|+++++.+|..
T Consensus 199 ~tGeGideLl~~l~~ 213 (590)
T TIGR00491 199 ITGEGIPELLTMLAG 213 (590)
T ss_pred CCCCChhHHHHHHHH
Confidence 999999999998854
No 191
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=123.26 Aligned_cols=170 Identities=24% Similarity=0.191 Sum_probs=117.9
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+.+.+.||+|.|+.++||||+++++......... .. ..+..++.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~----~~----------------~~~~s~k~---------------- 49 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITE----AD----------------ASSVSGKG---------------- 49 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceee----cc----------------cccccccc----------------
Confidence 4577899999999999999999999654321000 00 00000000
Q ss_pred Ccccceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
....+..+--.... ..+..++++|||||++|.-.++ ...+.+..+++++|.+.+..+ +..+.+ .++...
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~------~l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~-- 119 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE------ILSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSR-- 119 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH------HHhCCcceEEEEEecCCCcch-HHHHHH-HHHhhc--
Confidence 00000000000111 2246799999999999998888 455779999999999999888 433333 333331
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
..+|++|.+||.|+.+..+.+++.++++... ...++++.+|..++|..+.+..+..+
T Consensus 120 ~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---------------~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 120 NPIPVVVAINKQDLFDALPPEKIREALKLEL---------------LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---------------CCCceeeeecccchhHHHHHHHHHhh
Confidence 2299999999999999999999999998752 23899999999999999998887654
No 192
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.9e-19 Score=135.10 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=67.5
Q ss_pred ccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC-CcEEEEEe
Q psy871 107 DYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGN 185 (249)
Q Consensus 107 ~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~n 185 (249)
..+...+..+.++||||++.|..... ..+..+|++++|+|+++...-+.. ....++.. .+ .++++|+|
T Consensus 70 ~~~~~~~~~~~liDTpG~~~~~~~~~------~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~---~~~~~iIvviN 138 (208)
T cd04166 70 RYFSTPKRKFIIADTPGHEQYTRNMV------TGASTADLAILLVDARKGVLEQTR--RHSYILSL---LGIRHVVVAVN 138 (208)
T ss_pred eEEecCCceEEEEECCcHHHHHHHHH------HhhhhCCEEEEEEECCCCccHhHH--HHHHHHHH---cCCCcEEEEEE
Confidence 33444566789999999877654333 456889999999999875322211 12222222 23 45788999
Q ss_pred cCCCCCCCC--H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 186 KIDKHGAAS--E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 186 K~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
|+|+.+... . .++.+.++.+. ....+++++||++|.|+++.
T Consensus 139 K~D~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 139 KMDLVDYSEEVFEEIVADYLAFAAKLG--------------IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred chhcccCCHHHHHHHHHHHHHHHHHcC--------------CCCceEEEEeCCCCCCCccC
Confidence 999975311 1 12222222222 12367999999999999753
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=1e-19 Score=152.45 Aligned_cols=188 Identities=19% Similarity=0.126 Sum_probs=104.1
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++++|+++|++++|||||+++|+...-....... ..+. ......|+.++-.++.........
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~----~~~~----------~~~~~~g~~~~~~~~~~d~~~~e~- 67 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTI----EKFE----------KEAQEKGKASFEFAWVMDRLKEER- 67 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHH----HHHH----------hHHHhcCCcccchhhhhccCHHHh-
Confidence 3567889999999999999999999853211000000 0000 000011222221122111111100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 175 (249)
..+.+.+.....+...+..+.+||+||++.|.... ...+..+|++++|+|+++..++.... .+...+....
T Consensus 68 ~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~------~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-- 139 (426)
T TIGR00483 68 ERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNM------ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-- 139 (426)
T ss_pred hcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHH------HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--
Confidence 12223333334445556789999999998764433 35678899999999999874332111 1111222221
Q ss_pred CCCcEEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 176 ASCPVLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
...|+++++||+|+.+... .+++.++++... .....++++++||++|.|+++
T Consensus 140 ~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g------------~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 140 GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVG------------YNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcC------------CCcccceEEEeeccccccccc
Confidence 2357999999999975211 233344444332 122347899999999999986
No 194
>KOG0393|consensus
Probab=99.81 E-value=9.9e-20 Score=132.96 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=117.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++.+|++|||+-++|||+|+..++.+.+. .+.||+.-+...-
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~------------------------------------- 44 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN------------------------------------- 44 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-------------------------------------
Confidence 45689999999999999999999888766 5556654111000
Q ss_pred cccceeceeccc-cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYF-PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 175 (249)
... .+....+-+|||+|++.|..++. -.|..+|+++++|++.++.+|.+.. .|+.++... .
T Consensus 45 ---------v~V~dg~~v~L~LwDTAGqedYDrlRp------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--c 107 (198)
T KOG0393|consen 45 ---------VTVDDGKPVELGLWDTAGQEDYDRLRP------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--C 107 (198)
T ss_pred ---------EEecCCCEEEEeeeecCCCcccccccc------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--C
Confidence 111 13344588999999999987665 4788999999999999999999864 566666432 3
Q ss_pred CCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871 176 ASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
++.|+++|++|.||.++ ++.++.....+.++ -..|++|||++..|+.++|
T Consensus 108 p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig----------------a~~y~EcSa~tq~~v~~vF 171 (198)
T KOG0393|consen 108 PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG----------------AVKYLECSALTQKGVKEVF 171 (198)
T ss_pred CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC----------------cceeeeehhhhhCCcHHHH
Confidence 88999999999999842 23344444444443 2789999999999999999
Q ss_pred HHHhhh
Q psy871 242 RWLANY 247 (249)
Q Consensus 242 ~~l~~~ 247 (249)
+...+.
T Consensus 172 ~~a~~~ 177 (198)
T KOG0393|consen 172 DEAIRA 177 (198)
T ss_pred HHHHHH
Confidence 876653
No 195
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=9.7e-19 Score=134.74 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=40.2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
..+|+++|+||+|+.. .++...+.+ ..+++++||++|.|++++++.+.+.++
T Consensus 175 ~y~p~iiV~NK~Dl~~---~~~~~~~~~-------------------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 175 VYIPCLYVYNKIDLIS---IEELDLLAR-------------------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eEeeEEEEEECccCCC---HHHHHHHhc-------------------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 3579999999999964 344443222 135899999999999999999998875
No 196
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=5.2e-19 Score=143.33 Aligned_cols=160 Identities=19% Similarity=0.141 Sum_probs=113.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
-.+-.+++++|.||||||||+|+|++.+...+.. -
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd---------------------------------------------I 248 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD---------------------------------------------I 248 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecC---------------------------------------------C
Confidence 3667899999999999999999998766553222 3
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
+++|++.....+.-....+.++||+|........+ ........++.+|.+++|+|++.+.+-.+. .+.. ...
T Consensus 249 ~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--~~~~----~~~ 322 (454)
T COG0486 249 AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--ALIE----LLP 322 (454)
T ss_pred CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--HHHH----hcc
Confidence 44556666666666677899999999665444433 224445667889999999999996333322 1112 122
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|.||+|+......... +.. ...+++.+||++|+|++.+.+.|.+.+
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~----~~~----------------~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESE----KLA----------------NGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred cCCCEEEEEechhcccccccchh----hcc----------------CCCceEEEEecCccCHHHHHHHHHHHH
Confidence 67999999999999875332222 111 124789999999999999999987754
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=1.7e-18 Score=125.85 Aligned_cols=119 Identities=26% Similarity=0.176 Sum_probs=81.4
Q ss_pred ceEEEEEeCCCchhhhhhHHH-HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSE-LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
...+.+||+||.......... .......+..+|++++|+|+++........ ++... ...+.|+++|+||+|+..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCC
Confidence 457899999998765544331 122334567899999999999976665543 22222 226899999999999987
Q ss_pred CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.....+......... ......+++++||+++.|++++++++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 119 EEEEEELLELRLLIL------------LLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred hhhHHHHHHHHHhhc------------ccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 544444322111111 122457899999999999999999998754
No 198
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.7e-19 Score=137.69 Aligned_cols=162 Identities=25% Similarity=0.299 Sum_probs=115.8
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
-|++||.||||||||+++++..... ++++|+.+..+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~------------------------------------- 203 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV------------------------------------- 203 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-------------------------------------
Confidence 5789999999999999999988754 788899888888721
Q ss_pred cceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCChh------hhHhhHHHHHHHHhc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSDRE------RFEESKSELQCLLTD 172 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~ 172 (249)
.....+++-|.||..+ .+.-......|+++++++-++++|+|.+..+ .+..+..++..+ .
T Consensus 204 -----------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~ 270 (369)
T COG0536 204 -----------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--S 270 (369)
T ss_pred -----------cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh--h
Confidence 1233578889999654 4444556788999999999999999998643 234444444444 3
Q ss_pred cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.++|.++|+||+|+... .++++...+.+.. ...+...++ +||.++.|++++...+.+.+
T Consensus 271 ~~L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~-----------~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 271 PKLAEKPRIVVLNKIDLPLD--EEELEELKKALAE-----------ALGWEVFYL-ISALTREGLDELLRALAELL 332 (369)
T ss_pred HHhccCceEEEEeccCCCcC--HHHHHHHHHHHHH-----------hcCCCccee-eehhcccCHHHHHHHHHHHH
Confidence 44578999999999996543 3334333333321 001112233 99999999999999888765
No 199
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2e-18 Score=141.87 Aligned_cols=164 Identities=19% Similarity=0.259 Sum_probs=114.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.|++.|+++|+...||||||..+.+.++.... -. +.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E-------------------------aG-------------------GI 38 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE-------------------------AG-------------------GI 38 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccccc-------------------------CC-------------------ce
Confidence 57899999999999999999999776544211 00 11
Q ss_pred ccceeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 99 HPTRRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..+........+. ....+.+.|||||+.|..++. +..+.+|+++||+|+++.-..+..+ -+... + ..+
T Consensus 39 TQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa------RGa~vtDIaILVVa~dDGv~pQTiE-AI~ha-k---~a~ 107 (509)
T COG0532 39 TQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA------RGASVTDIAILVVAADDGVMPQTIE-AINHA-K---AAG 107 (509)
T ss_pred eeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh------cCCccccEEEEEEEccCCcchhHHH-HHHHH-H---HCC
Confidence 1111111111110 235799999999999999999 8889999999999999954444332 12222 2 278
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.|+++..||+|+++. ..+.+...++..+. ..+...+...++++||++|+|+++|+..+.-
T Consensus 108 vP~iVAiNKiDk~~~-np~~v~~el~~~gl--------~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 108 VPIVVAINKIDKPEA-NPDKVKQELQEYGL--------VPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred CCEEEEEecccCCCC-CHHHHHHHHHHcCC--------CHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 999999999999864 55556555655442 1223345589999999999999999988753
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=1.7e-18 Score=143.82 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=74.3
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
...+.++|+||++.|..... ..+..+|++++|+|+++........+.+..+ .. ....|+++++||+|+.+.
T Consensus 79 ~~~i~liDtPGh~~f~~~~~------~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATML------SGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred ccEEEEEECCCHHHHHHHHH------HHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCH
Confidence 34689999999988765444 5667899999999999753111222233322 22 123578999999999763
Q ss_pred CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....+..+.+..+.. ......++++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~~i~~~l~----------~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 150 EKALENYEEIKEFVK----------GTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHHHHHHHhhhh----------hcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 222111111211110 0011247899999999999999999998754
No 201
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=3.9e-18 Score=135.93 Aligned_cols=161 Identities=21% Similarity=0.220 Sum_probs=115.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
..-+.|+++|..|||||||+|+|++.... ..+.|..+....+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~---------------------------------- 235 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE---------------------------------- 235 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE----------------------------------
Confidence 34568999999999999999999876533 34445554444441
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchh--hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRER--FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~--~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
+ .....+.+-||-|+.+ -..+....+.++.....+|.+++|+|+++|.....+. ....++.+.
T Consensus 236 -------------l-~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el 300 (411)
T COG2262 236 -------------L-GDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLE-AVEDVLAEI 300 (411)
T ss_pred -------------e-CCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHH-HHHHHHHHc
Confidence 1 1134678888888553 3445667778888899999999999999995555544 455666666
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+...+|+++|.||+|+..+.. ....+.... -..+++||++|.|++.+.+.|.+.+
T Consensus 301 ~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~-----------------~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 301 GADEIPIILVLNKIDLLEDEE---ILAELERGS-----------------PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred CCCCCCEEEEEecccccCchh---hhhhhhhcC-----------------CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 667899999999999876422 111122111 1489999999999999999988765
No 202
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.79 E-value=4e-18 Score=147.19 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=79.1
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
+.+..+.+|||||+..|..... .++..+|++++|+|+++....+....+. ... . .++|+++|+||+|+.
T Consensus 71 g~~~~lnLiDTPGh~dF~~~v~------~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~-~---~~lpiIvViNKiDl~ 139 (600)
T PRK05433 71 GETYILNLIDTPGHVDFSYEVS------RSLAACEGALLVVDASQGVEAQTLANVY-LAL-E---NDLEIIPVLNKIDLP 139 (600)
T ss_pred CCcEEEEEEECCCcHHHHHHHH------HHHHHCCEEEEEEECCCCCCHHHHHHHH-HHH-H---CCCCEEEEEECCCCC
Confidence 3456789999999999877666 5677899999999999865555443222 222 2 578999999999986
Q ss_pred CCCCHHHH-HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 191 GAASEEEI-RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
... .++. .++.+.+. .....++++||++|.|+++++++|.+.+
T Consensus 140 ~a~-~~~v~~ei~~~lg--------------~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 140 AAD-PERVKQEIEDVIG--------------IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred ccc-HHHHHHHHHHHhC--------------CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 542 2222 22222222 1113589999999999999999998754
No 203
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=9.6e-18 Score=122.05 Aligned_cols=165 Identities=19% Similarity=0.271 Sum_probs=102.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC-CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..+-|+++|.+|||||||+|+|++.. ...+. . ++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS------------------------k---------------------tP 57 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTS------------------------K---------------------TP 57 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecC------------------------C---------------------CC
Confidence 34589999999999999999998743 12111 1 22
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhh---hhHH----HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE---ESKS----ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~---~~~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
++|+.. .+++- +..+.++|.||..-.. +..+ ....++.....-.++++++|+.++..-.+. ++.+++.
T Consensus 58 GrTq~i--Nff~~-~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~ 132 (200)
T COG0218 58 GRTQLI--NFFEV-DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL 132 (200)
T ss_pred Ccccee--EEEEe-cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH
Confidence 222222 22222 2238899999954211 1222 334455555667888999999986544333 5555555
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCHHH-HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 172 DESLASCPVLILGNKIDKHGAASEEE-IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+ .++|+++++||+|.+....... +....+.+.. .......++..|+.++.|++++...|.+.+
T Consensus 133 ~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~-----------~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 133 E---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK-----------PPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred H---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC-----------CCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 5 7899999999999987533322 2222223321 001111288899999999999999988765
No 204
>KOG4252|consensus
Probab=99.78 E-value=1.6e-19 Score=127.17 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=126.2
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+.+|++|+|--++||||++++++.+-+. .+.-|++...-.-
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfler-------------------------------------- 60 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLER-------------------------------------- 60 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhH--------------------------------------
Confidence 3469999999999999999999877654 2222332111110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
. ..+...+....+||+.|+++|..+.. .+|+++.+.++||.-++..+|+....|..++..+ ...+
T Consensus 61 -----q--i~v~~Edvr~mlWdtagqeEfDaItk------Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~I 125 (246)
T KOG4252|consen 61 -----Q--IKVLIEDVRSMLWDTAGQEEFDAITK------AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERI 125 (246)
T ss_pred -----H--HHhhHHHHHHHHHHhccchhHHHHHH------HHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccC
Confidence 0 11223355677899999999999988 8889999999999999999999999898888654 3689
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|.++|-||+|+++ ....++++..++... ..++.+|++...|+..+|.+|++.+
T Consensus 126 PtV~vqNKIDlveds~~~~~evE~lak~l~-----------------~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 126 PTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----------------KRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred CeEEeeccchhhHhhhcchHHHHHHHHHhh-----------------hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999987 466778888888766 7789999999999999999998753
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=3.6e-18 Score=146.93 Aligned_cols=185 Identities=18% Similarity=0.228 Sum_probs=102.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..|++.|+++|++|+|||||+++|++..+....+ +.....+ ...+...+.. . . .
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~--g~itq~i-------g~~~~~~~~~------~---------~--~ 56 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA--GGITQHI-------GATEVPIDVI------E---------K--I 56 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCC--CceEEee-------ceeecccccc------c---------c--c
Confidence 4688999999999999999999998664432111 0000001 0000000000 0 0 0
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDES 174 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~ 174 (249)
.......+...+. -..+.+|||||++.|...+. ..+..+|++++|+|+++ +.++..+ .. +..
T Consensus 57 ~~~~~~~~~~~~~--~~~i~~iDTPG~e~f~~~~~------~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~-~~~-- 121 (586)
T PRK04004 57 AGPLKKPLPIKLK--IPGLLFIDTPGHEAFTNLRK------RGGALADIAILVVDINEGFQPQTIEAI----NI-LKR-- 121 (586)
T ss_pred cceeccccccccc--cCCEEEEECCChHHHHHHHH------HhHhhCCEEEEEEECCCCCCHhHHHHH----HH-HHH--
Confidence 0000000000010 01278999999999987766 56678999999999997 4444433 22 222
Q ss_pred CCCCcEEEEEecCCCCCCCCH--------------HHHH-----------HHhhhcccccCcccCCCCCCCCCceeEEEe
Q psy871 175 LASCPVLILGNKIDKHGAASE--------------EEIR-----------QYFGLYGLTTGKVATPRSEMSGRPIELFMC 229 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~--------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (249)
.++|+++++||+|+...... .++. ..+...+... +...........++++++
T Consensus 122 -~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~--e~~~~~~~~~~~v~ivpi 198 (586)
T PRK04004 122 -RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSA--DRFDRVKDFTKTVAIVPV 198 (586)
T ss_pred -cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCCh--hhhhhhhccCCCceEeec
Confidence 57999999999998632110 1111 1111111000 000000011245889999
Q ss_pred eeccccchHHHHHHHhh
Q psy871 230 SVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 230 Sa~~g~gv~~l~~~l~~ 246 (249)
||++|+|+++++..+..
T Consensus 199 SA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 199 SAKTGEGIPDLLMVLAG 215 (586)
T ss_pred cCCCCCChHHHHHHHHH
Confidence 99999999999887753
No 206
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.78 E-value=2e-18 Score=119.72 Aligned_cols=118 Identities=22% Similarity=0.209 Sum_probs=74.8
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
||+|+|++|||||||+++|.+............. + .+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~----------------------------------------~--~~~ 38 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETS----------------------------------------E--ITI 38 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SST----------------------------------------T--SCE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccC----------------------------------------C--CcE
Confidence 7999999999999999999987655100000000 0 000
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCCCCcEE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLASCPVL 181 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~i 181 (249)
.............+.+||++|.+.+..... ..+..+|++++|+|++++.++..+..++..+.... ...++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pii 112 (119)
T PF08477_consen 39 GVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ------FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPII 112 (119)
T ss_dssp EEEEEEETTEEEEEEEEEESSSHCHHCTSH------HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEE
T ss_pred EEEEEEecCCceEEEEEecCccceeccccc------chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEE
Confidence 000111222233489999999987766555 23678999999999999999988754433332211 13569999
Q ss_pred EEEecCC
Q psy871 182 ILGNKID 188 (249)
Q Consensus 182 vv~nK~D 188 (249)
+|+||.|
T Consensus 113 lv~nK~D 119 (119)
T PF08477_consen 113 LVGNKSD 119 (119)
T ss_dssp EEEE-TC
T ss_pred EEEeccC
Confidence 9999998
No 207
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=6.2e-18 Score=140.02 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=103.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+++++|+++|++++|||||+++|++..... ++....+ ...+.... .+. .
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~------------------g~~~~~~------~~~~d~~~----~E~--~ 58 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAER------------------GLNQAKD------YDSIDAAP----EEK--E 58 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhh------------------ccccccc------hhhhcCCH----HHH--h
Confidence 4677899999999999999999997421100 0000000 00000000 000 1
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.+.+.......++..+..+.++||||++.|.... +..+..+|++++|+|+++...-+. .+.+.. +.. .+
T Consensus 59 rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~------~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~-~~~---~g 127 (394)
T PRK12736 59 RGITINTAHVEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPMPQT-REHILL-ARQ---VG 127 (394)
T ss_pred cCccEEEEeeEecCCCcEEEEEECCCHHHHHHHH------HHHHhhCCEEEEEEECCCCCchhH-HHHHHH-HHH---cC
Confidence 1222223223344455678899999998765433 356678999999999987422222 112222 222 56
Q ss_pred Cc-EEEEEecCCCCCCCCH-----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc--------chHHHHHH
Q psy871 178 CP-VLILGNKIDKHGAASE-----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ--------GYGDGFRW 243 (249)
Q Consensus 178 ~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--------gv~~l~~~ 243 (249)
+| +++++||+|+.+.... +++.++++... +.....+++++||++|. +++++++.
T Consensus 128 ~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~ 195 (394)
T PRK12736 128 VPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMDA 195 (394)
T ss_pred CCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC------------CCcCCccEEEeeccccccCCCcchhhHHHHHHH
Confidence 78 6789999999753221 23333333332 11234789999999983 67888888
Q ss_pred Hhhhc
Q psy871 244 LANYI 248 (249)
Q Consensus 244 l~~~i 248 (249)
|.+.+
T Consensus 196 l~~~l 200 (394)
T PRK12736 196 VDEYI 200 (394)
T ss_pred HHHhC
Confidence 77654
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=1.7e-18 Score=132.50 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=71.2
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh---hH---hhHHHHHHHHhccC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER---FE---ESKSELQCLLTDES 174 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~---~~~~~~~~~~~~~~ 174 (249)
+.......+...+..+.++||||+..|... ....+..+|++++|+|+++... +. .....+. +...
T Consensus 64 T~d~~~~~~~~~~~~i~liDtpG~~~~~~~------~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~-- 134 (219)
T cd01883 64 TIDVGLAKFETEKYRFTILDAPGHRDFVPN------MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART-- 134 (219)
T ss_pred CeecceEEEeeCCeEEEEEECCChHHHHHH------HHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--
Confidence 333333444445678999999998766433 2356678999999999998421 11 1111222 2222
Q ss_pred CCCCcEEEEEecCCCCCC-CCH---HHHHHH----hhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 175 LASCPVLILGNKIDKHGA-ASE---EEIRQY----FGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~-~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
....|+++++||+|+... ... +++.+. ++... .....++++++||++|.|+++
T Consensus 135 ~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 135 LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG------------YNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecCcCCCCCc
Confidence 123689999999999742 122 222222 22222 122358899999999999863
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=1.9e-17 Score=127.81 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=80.7
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
...+..+.+|||||+..|..... .+++.+|++++|+|+++....+ ...++. .+.. .++|+++++||+|+
T Consensus 60 ~~~~~~i~liDTPG~~~f~~~~~------~~l~~aD~~IlVvd~~~g~~~~-~~~~~~-~~~~---~~~P~iivvNK~D~ 128 (237)
T cd04168 60 QWEDTKVNLIDTPGHMDFIAEVE------RSLSVLDGAILVISAVEGVQAQ-TRILWR-LLRK---LNIPTIIFVNKIDR 128 (237)
T ss_pred EECCEEEEEEeCCCccchHHHHH------HHHHHhCeEEEEEeCCCCCCHH-HHHHHH-HHHH---cCCCEEEEEECccc
Confidence 34567899999999988766555 5678899999999999864332 222333 3332 57999999999999
Q ss_pred CCCCCHHHHHHHhhhccccc--------------Ccc-------------------cCCCCCC--------------CCC
Q psy871 190 HGAASEEEIRQYFGLYGLTT--------------GKV-------------------ATPRSEM--------------SGR 222 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~--------------~~~-------------------~~~~~~~--------------~~~ 222 (249)
......+-+.+....+...- ... .....+. ...
T Consensus 129 ~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 129 AGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 76422222222222121100 000 0000000 123
Q ss_pred ceeEEEeeeccccchHHHHHHHhhhc
Q psy871 223 PIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 223 ~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
-+|++..||.++.|++.|++.+.+.+
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhc
Confidence 47899999999999999999998764
No 210
>KOG1423|consensus
Probab=99.77 E-value=1.5e-17 Score=127.27 Aligned_cols=177 Identities=21% Similarity=0.191 Sum_probs=107.2
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+-..+...|+|+|+||+|||||.|.+.+..++....
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~-------------------------------------------- 102 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR-------------------------------------------- 102 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccc--------------------------------------------
Confidence 345778899999999999999999998876653222
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHH------HHhhhhccccccceEEEEEECCChhhhHhh--HHHHH
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS------ELQCLLTDESLASSIVFLVDTSDRERFEES--KSELQ 167 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~ 167 (249)
...+++......+...+..++++||||...-...++ .....-..+..+|+++.|+|+++....-+. ...+.
T Consensus 103 -K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~ 181 (379)
T KOG1423|consen 103 -KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLE 181 (379)
T ss_pred -cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHH
Confidence 222222222334455667899999999543333322 112233556789999999999963222221 11333
Q ss_pred HHHhccCCCCCcEEEEEecCCCCCCCC-----------------HHHHHHHhhhcccccCcccCCCCCCC-CCceeEEEe
Q psy871 168 CLLTDESLASCPVLILGNKIDKHGAAS-----------------EEEIRQYFGLYGLTTGKVATPRSEMS-GRPIELFMC 229 (249)
Q Consensus 168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 229 (249)
++ ..+|-++|+||.|...+.. .-++.+...... +.+. ...... .....+|.+
T Consensus 182 ~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p---~~~~-~~~~~gwshfe~vF~v 251 (379)
T KOG1423|consen 182 EY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVP---SDEK-WRTICGWSHFERVFMV 251 (379)
T ss_pred HH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCC---cccc-cccccCcccceeEEEE
Confidence 33 6799999999999765200 011111111100 0000 000011 113469999
Q ss_pred eeccccchHHHHHHHhhh
Q psy871 230 SVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 230 Sa~~g~gv~~l~~~l~~~ 247 (249)
||++|+|++++.+||..+
T Consensus 252 SaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 252 SALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred ecccccCHHHHHHHHHhc
Confidence 999999999999999865
No 211
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.77 E-value=1.5e-17 Score=122.11 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=72.6
Q ss_pred EEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871 115 IVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187 (249)
Q Consensus 115 ~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 187 (249)
.+.++|+||.... .........+.......+++++++|..+....... .+.+.+.. .+.|+++++||+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEch
Confidence 7889999995432 11122233344444567889999999875322221 22233332 468999999999
Q ss_pred CCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 188 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+.................. ......+++++||+++.|+++++++|.+.+
T Consensus 121 D~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 121 DKLKKSELAKALKEIKKELK-----------LFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hcCChHHHHHHHHHHHHHHH-----------hccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 99654333222222221110 011336899999999999999999998764
No 212
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.77 E-value=6.6e-18 Score=145.71 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=73.5
Q ss_pred eEEEEEeCCCchhhhhhHHH---HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSE---LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~---~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+.+|||||++++...... ...++. .+.+|++++|+|+++.+.... ...++.+ .++|+++++||+|+.
T Consensus 41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~VvDat~ler~l~---l~~ql~~----~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNVVDASNLERNLY---LTLQLLE----LGIPMILALNLVDEA 112 (591)
T ss_pred eEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEEecCCcchhhHH---HHHHHHh----cCCCEEEEEehhHHH
Confidence 45789999998876554211 111111 246899999999998543221 2233322 579999999999986
Q ss_pred CCC-CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 191 GAA-SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++. ...+.+...+..+ .+++++||++|+|++++++++.+.
T Consensus 113 ~~~~i~~d~~~L~~~lg-----------------~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 113 EKKGIRIDEEKLEERLG-----------------VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred HhCCChhhHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 532 2223344444433 789999999999999999999764
No 213
>PRK09866 hypothetical protein; Provisional
Probab=99.76 E-value=7.4e-17 Score=135.98 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCchhh-hh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 113 DAIVFLVDTSDRERF-EE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~-~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
...++++||||...- .. ....+ ...+..+|++++|+|+.+..+..+. .+.+.++..+ .+.|+++|+||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M---~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~-K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKML---NQQLARASAVLAVLDYTQLKSISDE--EVREAILAVG-QSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHH---HHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcC-CCCCEEEEEEcccCC
Confidence 345899999997542 11 22222 2468899999999999885443332 3333333311 135999999999986
Q ss_pred CCCC--HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 191 GAAS--EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 191 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+... .+.+.++.+.... ....+...++++||++|.|++++++.|..
T Consensus 303 dreeddkE~Lle~V~~~L~----------q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 303 DRNSDDADQVRALISGTLM----------KGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CcccchHHHHHHHHHHHHH----------hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 5322 5566665543210 01123467999999999999999999876
No 214
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.2e-17 Score=136.87 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=102.6
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+-.+++++|+++|++++|||||+++|++..... |+.++........... .
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~-----------------------------g~~~~~~~~~~d~~~~-E 56 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK-----------------------------GGGEAKAYDQIDNAPE-E 56 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhc-----------------------------CCcccchhhhccCChh-H
Confidence 445778899999999999999999998621100 0000000000000000 0
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+.+.......++..+..+.++||||++.|..... ..+..+|++++|+|+.+....+. .+.+... ..
T Consensus 57 ~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~------~~~~~aD~~llVvda~~g~~~qt-~e~l~~~-~~--- 125 (396)
T PRK12735 57 KARGITINTSHVEYETANRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSAADGPMPQT-REHILLA-RQ--- 125 (396)
T ss_pred HhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHH------hhhccCCEEEEEEECCCCCchhH-HHHHHHH-HH---
Confidence 0111222222233344456789999999976644333 66778999999999987432221 2233222 22
Q ss_pred CCCcEE-EEEecCCCCCCCC-HH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHH
Q psy871 176 ASCPVL-ILGNKIDKHGAAS-EE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGD 239 (249)
Q Consensus 176 ~~~p~i-vv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~ 239 (249)
.++|.+ +++||+|+.+... .+ ++..+++.+. ......+++++||++|. ++.+
T Consensus 126 ~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~------------~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~ 193 (396)
T PRK12735 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEAKILE 193 (396)
T ss_pred cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC------------CCcCceeEEecchhccccCCCCCcccccHHH
Confidence 568865 5799999975211 11 3333343332 11124789999999984 6778
Q ss_pred HHHHHhhh
Q psy871 240 GFRWLANY 247 (249)
Q Consensus 240 l~~~l~~~ 247 (249)
+++.|.+.
T Consensus 194 Ll~~l~~~ 201 (396)
T PRK12735 194 LMDAVDSY 201 (396)
T ss_pred HHHHHHhc
Confidence 88877654
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.76 E-value=2.1e-17 Score=137.28 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=72.7
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
..+.+|||||++.|... ++.....+|++++|+|++++. ..+. ...+..+ .. ....|+++|+||+|+.+.
T Consensus 85 ~~i~liDtPG~~~f~~~------~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 85 RRVSFVDAPGHETLMAT------MLSGAALMDGAILVIAANEPCPQPQT-KEHLMAL-DI--IGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred cEEEEEECCCHHHHHHH------HHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHH-HH--cCCCcEEEEEEeeccccc
Confidence 57899999999876543 335667789999999999753 1221 1122222 22 123478999999999764
Q ss_pred CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....+..+.+..+.. .......+++++||++|.|+++++++|.+.+
T Consensus 155 ~~~~~~~~~i~~~l~----------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 155 ERALENYEQIKEFVK----------GTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred hhHHHHHHHHHHHhc----------cccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 222211111221110 0011237899999999999999999998754
No 216
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=1.9e-17 Score=137.75 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=96.6
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++++|+++|++++|||||+++|++.......... . . .+.+ .... ...
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~------~-------~-----------~~~~-----d~~~-~e~ 57 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA------K-------K-----------YDEI-----DSAP-EEK 57 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc------c-------c-----------cccc-----cCCh-hhh
Confidence 3577889999999999999999999864221100000 0 0 0000 0000 000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+.+.......++..+..+.++||||+..|..... ..+..+|++++|+|+.....-+. .+.+. ++.. .
T Consensus 58 ~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~------~~~~~~D~~ilVvda~~g~~~qt-~~~~~-~~~~---~ 126 (409)
T CHL00071 58 ARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSAADGPMPQT-KEHIL-LAKQ---V 126 (409)
T ss_pred cCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHH------HHHHhCCEEEEEEECCCCCcHHH-HHHHH-HHHH---c
Confidence 122233332333444556788999999876544443 56778999999999987432221 11222 2222 5
Q ss_pred CCc-EEEEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc
Q psy871 177 SCP-VLILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236 (249)
Q Consensus 177 ~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 236 (249)
++| +++++||+|+.+... . +++.++++... .....++++++||++|.+
T Consensus 127 g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~------------~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 127 GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD------------FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC------------CCCCcceEEEcchhhccc
Confidence 688 778999999976321 1 23344444332 112247999999999863
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=2.2e-17 Score=142.83 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=73.2
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKHGA 192 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 192 (249)
..+.+||+||++.|..... ..+..+|++++|+|+++...-+.. +.+ .++.. .++| +++|+||+|+.++
T Consensus 51 ~~i~~IDtPGhe~fi~~m~------~g~~~~D~~lLVVda~eg~~~qT~-ehl-~il~~---lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNML------AGVGGIDHALLVVACDDGVMAQTR-EHL-AILQL---TGNPMLTVALTKADRVDE 119 (614)
T ss_pred cEEEEEECCCHHHHHHHHH------HHhhcCCEEEEEEECCCCCcHHHH-HHH-HHHHH---cCCCeEEEEEECCccCCH
Confidence 3578999999988754443 667889999999999874222211 122 22222 4566 5799999999764
Q ss_pred CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
...++..+.++.... .......+++++||++|.|++++++.|.+.
T Consensus 120 ~~~~~v~~ei~~~l~----------~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 120 ARIAEVRRQVKAVLR----------EYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred HHHHHHHHHHHHHHH----------hcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 233332222222110 011123689999999999999999999764
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=3.9e-17 Score=140.48 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=108.2
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC--CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR--LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+-++|+++|++++|||||+++|+... +.....+.. .+ .... .. ...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~----~v-----------~D~~----------------~~-E~e 51 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE----RV-----------MDSN----------------DL-EKE 51 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccce----ee-----------eccc----------------cc-ccc
Confidence 45799999999999999999998622 211000000 00 0000 00 001
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.+.+.......+...+..+.+|||||+..|..... ..+..+|++++|+|+++....+. ...+..... .+
T Consensus 52 rGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~------~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~g 120 (607)
T PRK10218 52 RGITILAKNTAIKWNDYRINIVDTPGHADFGGEVE------RVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YG 120 (607)
T ss_pred CceEEEEEEEEEecCCEEEEEEECCCcchhHHHHH------HHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cC
Confidence 11122222223344567899999999998877666 66789999999999987533322 223333322 67
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHHHHHHHhhh
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGDGFRWLANY 247 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~ 247 (249)
+|.++++||+|+......+.+.+....+.. .+. . .....+|++++||++|. |+..+++.+.++
T Consensus 121 ip~IVviNKiD~~~a~~~~vl~ei~~l~~~-l~~-----~-~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 121 LKPIVVINKVDRPGARPDWVVDQVFDLFVN-LDA-----T-DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred CCEEEEEECcCCCCCchhHHHHHHHHHHhc-cCc-----c-ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 899999999999765443333333333211 000 0 11234789999999998 588888887765
Q ss_pred c
Q psy871 248 I 248 (249)
Q Consensus 248 i 248 (249)
+
T Consensus 194 i 194 (607)
T PRK10218 194 V 194 (607)
T ss_pred C
Confidence 4
No 219
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.75 E-value=3.2e-17 Score=141.13 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
...+..+.+|||||+..|..... ..+..+|++++|+|+.+... .....++..... .++|+++++||+|+
T Consensus 60 ~~~~~kinlIDTPGh~DF~~ev~------~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~----~~ip~IVviNKiD~ 128 (594)
T TIGR01394 60 RYNGTKINIVDTPGHADFGGEVE------RVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE----LGLKPIVVINKIDR 128 (594)
T ss_pred EECCEEEEEEECCCHHHHHHHHH------HHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH----CCCCEEEEEECCCC
Confidence 34467899999999998876665 66788999999999987432 222334444432 67899999999998
Q ss_pred CCCCCH---HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHHHHHHHhhhc
Q psy871 190 HGAASE---EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGDGFRWLANYI 248 (249)
Q Consensus 190 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i 248 (249)
.+.... +++.+.+..+... .....++++++||++|. |++.+++.+.+.+
T Consensus 129 ~~a~~~~v~~ei~~l~~~~g~~----------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 129 PSARPDEVVDEVFDLFAELGAD----------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CCcCHHHHHHHHHHHHHhhccc----------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 764222 2333333322200 01123789999999996 7999999988764
No 220
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=4e-17 Score=138.34 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=104.6
Q ss_pred eceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh-hHH-HHhhhhccccc
Q psy871 66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKS-ELQCLLTDESL 143 (249)
Q Consensus 66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~-~~~~~~~~~~~ 143 (249)
..++.++|.+++|||+|++++.........+.++.++..........+..+.+|||||.+.... ... .......++..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 3579999999999999999999876543333444444433333333345688999999763211 111 12233456788
Q ss_pred cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871 144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP 223 (249)
Q Consensus 144 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (249)
+|++++|+|+++..++... .+...+.. .++|+++|+||+|+.... .+..+... .. .
T Consensus 118 aD~il~VvD~~~~~s~~~~--~i~~~l~~---~~~piilV~NK~Dl~~~~--~~~~~~~~-~g------------~---- 173 (472)
T PRK03003 118 ADAVLFVVDATVGATATDE--AVARVLRR---SGKPVILAANKVDDERGE--ADAAALWS-LG------------L---- 173 (472)
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCccc--hhhHHHHh-cC------------C----
Confidence 9999999999987655432 33444433 679999999999986431 11211111 11 0
Q ss_pred eeEEEeeeccccchHHHHHHHhhhc
Q psy871 224 IELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 224 ~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
-..+++||++|.|++++++++.+.+
T Consensus 174 ~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 174 GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 1347999999999999999998764
No 221
>KOG1532|consensus
Probab=99.75 E-value=2.7e-18 Score=129.40 Aligned_cols=223 Identities=20% Similarity=0.220 Sum_probs=121.3
Q ss_pred hcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCC----CCCcccceeeee-------e-eeceE--EEEcCCCC
Q psy871 12 LGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP----TLHPILGYLGLW-------T-KSGKL--LFLGLDNA 77 (249)
Q Consensus 12 ~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~----t~~~~~~~~~~~-------~-~~~~~--~~~g~~~~ 77 (249)
++..|...++..|+|+|+.|||||||++||...-.....| ...+.+..+-++ + ....+ .+.-.|++
T Consensus 10 ~~a~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 10 LEASGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred hcccccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 3446778899999999999999999999998643221111 111111111000 0 11111 12245667
Q ss_pred chhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhh---hhhHHHHhhhhccccccceEEEEEECC
Q psy871 78 GKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF---EESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 78 Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~---~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
|..+-+|.+... + .......... .......++||||+.+. .+....+...+.. ...-+++||+|..
T Consensus 90 gI~TsLNLF~tk-~-------dqv~~~iek~--~~~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~ 158 (366)
T KOG1532|consen 90 GIVTSLNLFATK-F-------DQVIELIEKR--AEEFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTP 158 (366)
T ss_pred chhhhHHHHHHH-H-------HHHHHHHHHh--hcccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCC
Confidence 766665554421 0 0000111111 11234778899997642 2222212212211 3467888999985
Q ss_pred C---hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCc-ccCCC----------CCCC
Q psy871 155 D---RERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGK-VATPR----------SEMS 220 (249)
Q Consensus 155 ~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~ 220 (249)
+ +.+|-.---+-..++. ....|++++.||+|+.+.....++...+..+....+. +.... -...
T Consensus 159 rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF 235 (366)
T KOG1532|consen 159 RSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEF 235 (366)
T ss_pred cCCCchhHHHHHHHHHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHH
Confidence 5 5555332112233333 3789999999999998865555554444433322221 11110 0111
Q ss_pred CCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.+..+.|||.+|+|.+++|..+.+.+
T Consensus 236 Y~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 236 YRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred HhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 2558899999999999999999887654
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3e-17 Score=136.11 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=94.8
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
+...+++++|+++|++++|||||+++|++.... .++....+.. .+ ....+.
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~------------------~g~~~~~~~~------~~-----d~~~~E 56 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAK------------------EGGAAARAYD------QI-----DNAPEE 56 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHH------------------hhcccccccc------cc-----cCCHHH
Confidence 344678889999999999999999999743100 0000000000 00 000000
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+.+.......++..+..+.++||||++.|.... ......+|++++|+|+.+....+.. +.+..+ ..
T Consensus 57 -~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~------~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~-~~-- 125 (394)
T TIGR00485 57 -KARGITINTAHVEYETENRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSATDGPMPQTR-EHILLA-RQ-- 125 (394)
T ss_pred -HhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHH------HHHHhhCCEEEEEEECCCCCcHHHH-HHHHHH-HH--
Confidence 011222222223344445678999999998765433 3566789999999999874322221 122322 22
Q ss_pred CCCCcEE-EEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871 175 LASCPVL-ILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235 (249)
Q Consensus 175 ~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 235 (249)
.++|.+ +++||+|+.+... . +++.++++... .....++++++||++|.
T Consensus 126 -~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 126 -VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD------------FPGDDTPIIRGSALKAL 179 (394)
T ss_pred -cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC------------CCccCccEEECcccccc
Confidence 467765 6899999975321 1 13333333332 11123789999999875
No 223
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=4.1e-17 Score=126.06 Aligned_cols=182 Identities=20% Similarity=0.235 Sum_probs=113.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCC---CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRL---AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++++|+|++||||||+.|++..- .++++|..+.++.+ ....+.++-.+.+|.-. ....+.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l----~Y~ga~IQild~Pgii~-----------gas~g~ 128 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML----EYKGAQIQLLDLPGIIE-----------GASSGR 128 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE----eecCceEEEEcCccccc-----------CcccCC
Confidence 4899999999999999999998653 38889999999998 44444444434332210 001122
Q ss_pred ccceeceeccccccceEEEEEeCCCchh-hhhhHHHH----------------------------------------hhh
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSEL----------------------------------------QCL 137 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~----------------------------------------~~~ 137 (249)
++.+... ...+++|..+++.|...... ...+.+.+ ...
T Consensus 129 grG~~vl-sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~i 207 (365)
T COG1163 129 GRGRQVL-SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAI 207 (365)
T ss_pred CCcceee-eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHH
Confidence 2222232 34577888888888764332 32333322 223
Q ss_pred hccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCC
Q psy871 138 LTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRS 217 (249)
Q Consensus 138 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
++.|.-.++.+++-.--..+.+.+ .+.. +...+|.++|.||+|+.. .+++....+.
T Consensus 208 L~Ey~I~nA~V~Ir~dvTlDd~id-------~l~~-nrvY~p~l~v~NKiD~~~---~e~~~~l~~~------------- 263 (365)
T COG1163 208 LREYRIHNADVLIREDVTLDDLID-------ALEG-NRVYKPALYVVNKIDLPG---LEELERLARK------------- 263 (365)
T ss_pred HHHhCcccceEEEecCCcHHHHHH-------HHhh-cceeeeeEEEEecccccC---HHHHHHHHhc-------------
Confidence 333444455555543333222222 1111 124789999999999986 4555554443
Q ss_pred CCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 218 EMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
..++++||+.+.|++++.+.|.+.++
T Consensus 264 ------~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 264 ------PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ------cceEEEecccCCCHHHHHHHHHHhhC
Confidence 35899999999999999999988764
No 224
>PRK00049 elongation factor Tu; Reviewed
Probab=99.75 E-value=4.4e-17 Score=134.95 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=103.0
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
++..+++++|+++|++++|||||+++|++..... + + ......+.+... ..+.
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~-----g-------------~------~~~~~~~~~d~~----~~E~ 57 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK-----G-------------G------AEAKAYDQIDKA----PEEK 57 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhc-----c-------------C------CcccchhhccCC----hHHH
Confidence 4456888999999999999999999998632100 0 0 000000000000 0000
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
..+.+.......+...+..+.++||||+..|..... ..+..+|++++|+|+.+...-+. .+.+ .++..
T Consensus 58 --~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~------~~~~~aD~~llVVDa~~g~~~qt-~~~~-~~~~~-- 125 (396)
T PRK00049 58 --ARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSAADGPMPQT-REHI-LLARQ-- 125 (396)
T ss_pred --hcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHH------hhhccCCEEEEEEECCCCCchHH-HHHH-HHHHH--
Confidence 111222222223334456788999999976544444 56788999999999987532222 2223 22222
Q ss_pred CCCCcEE-EEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chH
Q psy871 175 LASCPVL-ILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYG 238 (249)
Q Consensus 175 ~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~ 238 (249)
.++|.+ +++||+|+.+... . +++...+.... +....++++++||++|. |+.
T Consensus 126 -~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~ 192 (396)
T PRK00049 126 -VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEKKIL 192 (396)
T ss_pred -cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC------------CCccCCcEEEeecccccCCCCcccccccHH
Confidence 568976 5899999975211 1 12333333322 11234789999999875 466
Q ss_pred HHHHHHhhh
Q psy871 239 DGFRWLANY 247 (249)
Q Consensus 239 ~l~~~l~~~ 247 (249)
.+++.|.+.
T Consensus 193 ~ll~~l~~~ 201 (396)
T PRK00049 193 ELMDAVDSY 201 (396)
T ss_pred HHHHHHHhc
Confidence 777777654
No 225
>KOG3883|consensus
Probab=99.75 E-value=2.1e-16 Score=108.65 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=115.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+..|++|+|..++|||+++..|..++... ..||++ +++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE---DiY------------------------------------ 48 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE---DIY------------------------------------ 48 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh---hhe------------------------------------
Confidence 45699999999999999999998776552 233332 111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
-..-..-++....+.++||.|.... .++.. .+...+|++++|++..++.+|+.....-+++-+....
T Consensus 49 ------~~svet~rgarE~l~lyDTaGlq~~~~eLpr------hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdK 116 (198)
T KOG3883|consen 49 ------VASVETDRGAREQLRLYDTAGLQGGQQELPR------HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDK 116 (198)
T ss_pred ------eEeeecCCChhheEEEeecccccCchhhhhH------hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccc
Confidence 0000111234457899999997665 44444 5667899999999999999998766444444333344
Q ss_pred CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+|+++++||+|+.+ +...+-...+++.-. +..++++|.....+-+.|.+|+.++
T Consensus 117 KEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-----------------vkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 117 KEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-----------------VKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred ccccEEEEechhhcccchhcCHHHHHHHHhhhh-----------------eeEEEEEeccchhhhhHHHHHHHhc
Confidence 6799999999999965 344445555555433 8999999999999999999998754
No 226
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.74 E-value=1.2e-17 Score=139.64 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=105.7
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++++|+++|+.++|||||+.+|+...-....... ..+. ......|+.++..++..+...+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~----~~~~----------~~~~~~~~~~~~~a~~~D~~~~Er- 67 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVI----ERFE----------KEAAEMNKRSFKYAWVLDKLKAER- 67 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHH----HHHh----------hhhhhhcccchhhhhhhcCCHhHH-
Confidence 4567889999999999999999999753211100000 0000 000111222222222222221111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh-------HhhHHHHHHH
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF-------EESKSELQCL 169 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------~~~~~~~~~~ 169 (249)
..+.+.......++..+..+.++|+||++.|..... ..+..+|+.++|+|+++. .| ....+.+..
T Consensus 68 ~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~------~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~- 139 (447)
T PLN00043 68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMI------TGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALL- 139 (447)
T ss_pred hcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHH------hhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHH-
Confidence 112222333344555677899999999999877766 667899999999999873 12 122222222
Q ss_pred HhccCCCCCc-EEEEEecCCCCCC-CC-------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 170 LTDESLASCP-VLILGNKIDKHGA-AS-------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 170 ~~~~~~~~~p-~ivv~nK~Dl~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
+. ..++| +++++||+|+.+. .. .+++..+++..+ +....++++++||++|.|+.+
T Consensus 140 ~~---~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g------------~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 140 AF---TLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG------------YNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HH---HcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeccccccccc
Confidence 11 25675 6889999998631 11 234444444333 222347899999999999853
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=8.4e-17 Score=124.75 Aligned_cols=175 Identities=23% Similarity=0.221 Sum_probs=118.2
Q ss_pred HhHHHHhhhcccccc-----------eecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceE
Q psy871 4 IWDWFTGVLGYLGLW-----------TKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKL 69 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~-----------~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~ 69 (249)
++.++-+-|.||+.. ...+.|+|.|+||||||||++++++..+. ++++|.+..++-.
T Consensus 140 iik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--------- 210 (346)
T COG1084 140 IIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--------- 210 (346)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee---------
Confidence 444555555555543 35678999999999999999999987643 6666666555544
Q ss_pred EEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCc-hh-hhhhHH-HHhhhhccccccce
Q psy871 70 LFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR-ER-FEESKS-ELQCLLTDESLASS 146 (249)
Q Consensus 70 ~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~-~~-~~~~~~-~~~~~~~~~~~~d~ 146 (249)
+.....+.++||||. ++ +.+..+ ..+..+.--+..++
T Consensus 211 ----------------------------------------e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~ 250 (346)
T COG1084 211 ----------------------------------------ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGV 250 (346)
T ss_pred ----------------------------------------ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCe
Confidence 333457899999992 21 222222 23344444567899
Q ss_pred EEEEEECCChhhhHh--hHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce
Q psy871 147 IVFLVDTSDRERFEE--SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI 224 (249)
Q Consensus 147 ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (249)
+++++|++..+.+.- -...+.++... ...|+++|.||+|..+....+++........ ..
T Consensus 251 IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----------------~~ 311 (346)
T COG1084 251 ILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG----------------GE 311 (346)
T ss_pred EEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc----------------cc
Confidence 999999999877632 22344444333 4589999999999987666666666655443 13
Q ss_pred eEEEeeeccccchHHHHHHHhh
Q psy871 225 ELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 225 ~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
....+|+..+.+++.+.+.+..
T Consensus 312 ~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 312 EPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred cccceeeeehhhHHHHHHHHHH
Confidence 4677899999999887766544
No 228
>KOG1145|consensus
Probab=99.74 E-value=1e-16 Score=131.37 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=115.4
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+..|++.|.|+|+...||||||.+|.+..+... ...
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-------------------------E~G------------------- 184 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-------------------------EAG------------------- 184 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehh-------------------------hcC-------------------
Confidence 346899999999999999999999976544310 111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
|+..+.......++ ....+.+.|||||..|.+.+. +.....|++++|+.++|.-..+..+ -++.. ...
T Consensus 185 GITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRa------RGA~vtDIvVLVVAadDGVmpQT~E-aIkhA----k~A 252 (683)
T KOG1145|consen 185 GITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRA------RGANVTDIVVLVVAADDGVMPQTLE-AIKHA----KSA 252 (683)
T ss_pred CccceeceEEEecC-CCCEEEEecCCcHHHHHHHHh------ccCccccEEEEEEEccCCccHhHHH-HHHHH----Hhc
Confidence 22222333333334 335789999999999999999 7888999999999998853333322 12222 227
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+.|+++.+||||.+.. +++.+.+.+-..+... + .-..+++++++||++|.|++.|.+.+.-
T Consensus 253 ~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~-------E-~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 253 NVPIVVAINKIDKPGA-NPEKVKRELLSQGIVV-------E-DLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCCEEEEEeccCCCCC-CHHHHHHHHHHcCccH-------H-HcCCceeEEEeecccCCChHHHHHHHHH
Confidence 8999999999998875 5555555554443211 1 2235689999999999999999887653
No 229
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=7e-18 Score=142.22 Aligned_cols=188 Identities=19% Similarity=0.121 Sum_probs=99.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchh--HHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT--TLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks--sl~~~l~~~~~~~~~~ 96 (249)
+++++|+++|++++|||||+++|+...-.....+.+ .+.. .....|++ ++-.++..+...+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~----~~~~----------~~~~~g~~~~~~~~a~~~D~~~eEr- 89 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLA----SLHN----------DSKRHGTQGEKLDLALLVDGLQAER- 89 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHH----HHHH----------HHHhcCCCccccchhhhccCChHHh-
Confidence 677899999999999999999997543221111100 0000 00001111 111111111111110
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+.+.......++..+..+.++||||++.|..... ..+..+|++++|+|+.....-+... .+ .+.... .
T Consensus 90 ~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~------~~l~~aD~allVVDa~~G~~~qt~~-~~-~l~~~l--g 159 (474)
T PRK05124 90 EQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMA------TGASTCDLAILLIDARKGVLDQTRR-HS-FIATLL--G 159 (474)
T ss_pred hcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCccccchH-HH-HHHHHh--C
Confidence 111222222233445567899999999887655333 4468899999999998743222111 11 122221 2
Q ss_pred CCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 177 SCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
..|+++++||+|+.+.. ..+++.+.+..+..... . ....+++++||++|.|++++
T Consensus 160 ~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~--------~-~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 160 IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLP--------G-NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcC--------C-CCCceEEEEEeecCCCcccc
Confidence 35789999999997521 12223332222110000 0 12478999999999999764
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.3e-17 Score=138.44 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=105.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
|+..+|+++|.||+|||||+|+|++.+.... -|++
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~Vg-----------------------NwpG---------------------- 35 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVG-----------------------NWPG---------------------- 35 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceec-----------------------CCCC----------------------
Confidence 3567899999999999999999988654310 0111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcc--ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD--ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
.|.......+...+..+.++|.||..++......-+-.-++ -..+|+++.|+|+++.+.--.+.-++.+ .
T Consensus 36 -vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE-------~ 107 (653)
T COG0370 36 -VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE-------L 107 (653)
T ss_pred -eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH-------c
Confidence 11111122333445568999999966554443211111122 2568999999999997665554333333 5
Q ss_pred CCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 177 SCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+.|+++++|++|.... ..+-+.+..-+.++ +|++++||++|.|++++++.+.+.
T Consensus 108 g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-----------------vPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 108 GIPMILALNMIDEAKKRGIRIDIEKLSKLLG-----------------VPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred CCCeEEEeccHhhHHhcCCcccHHHHHHHhC-----------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence 8999999999998652 12223444444444 899999999999999999988653
No 231
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=9.4e-17 Score=134.24 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=100.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+++++|+++|++++|||||+++|++.... .+. .....+.-.|.. . ....
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~-----~g~----------~~~~~~~~~D~~--------------~-~E~~ 107 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE-----EGK----------AKAVAFDEIDKA--------------P-EEKA 107 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHH-----hhc----------ccceeeccccCC--------------h-hHhh
Confidence 467889999999999999999999632100 000 000000000000 0 0001
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.+.+.+.....++..+..+.++||||+..|..... .....+|++++|+|+.+...-+. .+.+. ++.. .+
T Consensus 108 rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~------~g~~~aD~allVVda~~g~~~qt-~e~l~-~~~~---~g 176 (447)
T PLN03127 108 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI------TGAAQMDGGILVVSAPDGPMPQT-KEHIL-LARQ---VG 176 (447)
T ss_pred cCceeeeeEEEEcCCCeEEEEEECCCccchHHHHH------HHHhhCCEEEEEEECCCCCchhH-HHHHH-HHHH---cC
Confidence 22233333344555567889999999976544443 45567999999999987532222 22222 2222 57
Q ss_pred Cc-EEEEEecCCCCCCCC-HHHHH----HHhhhcccccCcccCCCCCCCCCceeEEEeeec---cccc-------hHHHH
Q psy871 178 CP-VLILGNKIDKHGAAS-EEEIR----QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL---MRQG-------YGDGF 241 (249)
Q Consensus 178 ~p-~ivv~nK~Dl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~g~g-------v~~l~ 241 (249)
+| +++++||+|+.+... .+.+. +.+.... +....++++++||. +|.| +.+++
T Consensus 177 ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~------------~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll 244 (447)
T PLN03127 177 VPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK------------FPGDEIPIIRGSALSALQGTNDEIGKNAILKLM 244 (447)
T ss_pred CCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC------------CCCCcceEEEeccceeecCCCcccccchHHHHH
Confidence 88 578899999975211 11122 2222211 11234788999886 4444 67777
Q ss_pred HHHhhhc
Q psy871 242 RWLANYI 248 (249)
Q Consensus 242 ~~l~~~i 248 (249)
+.|.+.+
T Consensus 245 ~~l~~~l 251 (447)
T PLN03127 245 DAVDEYI 251 (447)
T ss_pred HHHHHhC
Confidence 7776543
No 232
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.8e-18 Score=137.79 Aligned_cols=188 Identities=19% Similarity=0.163 Sum_probs=111.9
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++.+++++|++++|||||+.+|+..--.....+....... ....||.++-.++..+...+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~e--------------a~~~gK~sf~fawvlD~tkeER- 67 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKE--------------AKELGKESFKFAWVLDKTKEER- 67 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHH--------------HHhcCCCceEEEEEecCChhHH-
Confidence 3467889999999999999999999854322211111111111 0123333332222222222111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hhHhhHHHHHHHHhcc
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RFEESKSELQCLLTDE 173 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~ 173 (249)
..+.+.......++.....+.++|+||+..|....- .....+|+.++|+|+.... +|.. ..+.++.+-..
T Consensus 68 erGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmI------tGasqAD~aVLVV~a~~~efE~g~~~-~gQtrEH~~La 140 (428)
T COG5256 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMI------TGASQADVAVLVVDARDGEFEAGFGV-GGQTREHAFLA 140 (428)
T ss_pred hcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhh------cchhhccEEEEEEECCCCcccccccc-CCchhHHHHHH
Confidence 223344444455666666799999999988876655 7788999999999998862 2211 11111111111
Q ss_pred -CCCCCcEEEEEecCCCCCCCCH-------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 174 -SLASCPVLILGNKIDKHGAASE-------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 174 -~~~~~p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
.+.-..+|+++||+|+++ .+. .++..+++.++ +....++++||||.+|.|+.+
T Consensus 141 ~tlGi~~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~G------------~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 141 RTLGIKQLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMVG------------YNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HhcCCceEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHcC------------CCccCCeEEecccccCCcccc
Confidence 113356899999999987 233 33334444444 333458999999999999854
No 233
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=3.6e-17 Score=136.96 Aligned_cols=186 Identities=15% Similarity=0.096 Sum_probs=101.8
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++++|+++|++++|||||+.+|+...-......+ +.+. ......|+.++-.++..+...+..
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~----~~~~----------~~~~~~~~~s~~~a~~~D~~~~Er- 67 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTI----EKFE----------KEAAEMGKGSFKYAWVLDKLKAER- 67 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHH----HHHh----------hHHHhhCCcchhhhhhhcCChHHH-
Confidence 4567889999999999999999999753211100000 0000 000111221211111111111110
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh---HhhHHHHHHHH
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF---EESKSELQCLL 170 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~ 170 (249)
..+.+.......++..+..+.++|+||+.+|..... ..+..+|++++|+|++... .+ ....+.+...
T Consensus 68 ~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~------~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~- 140 (446)
T PTZ00141 68 ERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMI------TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA- 140 (446)
T ss_pred hcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHH------HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-
Confidence 111222222233445567899999999998865554 6678999999999998742 11 1222222222
Q ss_pred hccCCCCCc-EEEEEecCCCCC-CCC---H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 171 TDESLASCP-VLILGNKIDKHG-AAS---E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 171 ~~~~~~~~p-~ivv~nK~Dl~~-~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
. ..++| +++++||+|... ... . +++.+.+.... .....++++++||++|.|+.+
T Consensus 141 ~---~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 141 F---TLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG------------YNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred H---HcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcC------------CCcccceEEEeecccCCCccc
Confidence 2 25776 679999999532 111 2 23333333222 122348999999999999964
No 234
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=1.8e-17 Score=137.74 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=68.9
Q ss_pred ccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEec
Q psy871 107 DYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186 (249)
Q Consensus 107 ~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 186 (249)
..++..+..+.++||||++.|..... ..+..+|++++|+|+.....-+..+ .+ .+.... ...++++++||
T Consensus 73 ~~~~~~~~~~~liDtPGh~~f~~~~~------~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~--~~~~iivviNK 142 (406)
T TIGR02034 73 RYFSTDKRKFIVADTPGHEQYTRNMA------TGASTADLAVLLVDARKGVLEQTRR-HS-YIASLL--GIRHVVLAVNK 142 (406)
T ss_pred EEEccCCeEEEEEeCCCHHHHHHHHH------HHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHc--CCCcEEEEEEe
Confidence 34444566889999999988765444 4668999999999998753322211 12 222221 23468899999
Q ss_pred CCCCCCCC--HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 187 IDKHGAAS--EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 187 ~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
+|+.+... .+++.+.+..+... ......+++++||++|.|+++
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAFAEQ----------LGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccccchHHHHHHHHHHHHHHHHH----------cCCCCccEEEeecccCCCCcc
Confidence 99975211 11222222211100 111246899999999999985
No 235
>PRK13768 GTPase; Provisional
Probab=99.72 E-value=3.8e-17 Score=127.27 Aligned_cols=134 Identities=20% Similarity=0.157 Sum_probs=81.9
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccc--cceEEEEEECCChhhhHhhHHH-HHHHHhccCCCCCcEEEEEecCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSE-LQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
+..++++|+||+.+.......+..+.+.+.. ++++++|+|+.......+.... +...... ...++|+++|+||+|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADL 174 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhh
Confidence 3468999999988766555555555555554 8999999999765433332211 1111111 1257999999999999
Q ss_pred CCCCCHHHHHHHhhhccccc---Cccc-----------CCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 190 HGAASEEEIRQYFGLYGLTT---GKVA-----------TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+....++..+.++...... .... -..... ....+++++||+++.|+++++++|.+.+
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 87655555444444200000 0000 000000 1225799999999999999999998865
No 236
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=2.3e-16 Score=132.62 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=95.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+++++|+++|++++|||||+++|+........... .+.... |.. .+. ..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~-------------~~~~~~--D~~--------------~~E-r~ 127 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAP-------------KKYDEI--DAA--------------PEE-RA 127 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccc-------------cccccc--cCC--------------hhH-Hh
Confidence 467789999999999999999999853221100000 000000 000 000 01
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.+.+.......++..+..+.++|+||++.|..... ..+..+|++++|+|+.+...-+. .+++... .. .+
T Consensus 128 rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~------~g~~~aD~ailVVda~~G~~~qt-~e~~~~~-~~---~g 196 (478)
T PLN03126 128 RGITINTATVEYETENRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQ---VG 196 (478)
T ss_pred CCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cC
Confidence 11122222233344566789999999988765443 66678999999999987533222 2233322 22 57
Q ss_pred Cc-EEEEEecCCCCCCCC-HH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871 178 CP-VLILGNKIDKHGAAS-EE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235 (249)
Q Consensus 178 ~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 235 (249)
+| +++++||+|+.+... .+ ++.++++... +....++++++||.+|.
T Consensus 197 i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 197 VPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE------------FPGDDIPIISGSALLAL 248 (478)
T ss_pred CCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC------------CCcCcceEEEEEccccc
Confidence 78 778999999976211 12 3333333322 12235899999999874
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.71 E-value=1e-16 Score=122.40 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=50.1
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
....+.+|||||+..|..... .++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~------~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVA------AALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHH------HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 346789999999988765544 66788999999999988665533 223333221 469999999999986
No 238
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=2.9e-16 Score=127.19 Aligned_cols=158 Identities=25% Similarity=0.245 Sum_probs=115.6
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhh--hh-HHHHhhhhccccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE--ES-KSELQCLLTDESL 143 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~--~~-~~~~~~~~~~~~~ 143 (249)
..+.++|.|++|||+|+|++...........++.|++-.....+-.+..+.++||+|.+... .+ ..+..+.+..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999887555555566655444444455669999999977433 23 3345677788899
Q ss_pred cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871 144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP 223 (249)
Q Consensus 144 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (249)
+|++++|+|.....+..+- .+.++++. .++|+++|+||+|-.. ..+...++... + .
T Consensus 84 ADvilfvVD~~~Git~~D~--~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efysl-G----------------~ 139 (444)
T COG1160 84 ADVILFVVDGREGITPADE--EIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSL-G----------------F 139 (444)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhc-C----------------C
Confidence 9999999999885443332 45555543 6799999999999763 12333333332 2 2
Q ss_pred eeEEEeeeccccchHHHHHHHhhhc
Q psy871 224 IELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 224 ~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
-+++++||..|.|+.+|++.+.+.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 5789999999999999999998765
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=4.4e-16 Score=130.04 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=73.8
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
..+.++|+||++.|..... ..+..+|++++|+|+.+. ...+. .+.+. ++.. ..-.|+++++||+|+.+.
T Consensus 117 ~~i~~IDtPGH~~fi~~m~------~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~--lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATML------NGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEI--MKLKHIIILQNKIDLVKE 186 (460)
T ss_pred ceEeeeeCCCHHHHHHHHH------HHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHH--cCCCcEEEEEecccccCH
Confidence 3678999999987755444 566789999999999974 22222 22222 2222 123468999999999863
Q ss_pred CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...++..+.++.... .......+++++||++|.|++.|++.|.+.+
T Consensus 187 ~~~~~~~~ei~~~l~----------~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 187 AQAQDQYEEIRNFVK----------GTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHH----------hhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 222222222222110 0011347999999999999999999998644
No 240
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=6.5e-16 Score=130.16 Aligned_cols=157 Identities=23% Similarity=0.191 Sum_probs=104.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhh-HH-HHhhhhccccccc
Q psy871 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEES-KS-ELQCLLTDESLAS 145 (249)
Q Consensus 68 ~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~-~~-~~~~~~~~~~~~d 145 (249)
++.++|.+++|||++++++.+.......+..+.++..........+..+.+|||||....... .+ ........++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 367899999999999999998765433333334433332333334557999999997432211 11 2233446678899
Q ss_pred eEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCcee
Q psy871 146 SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225 (249)
Q Consensus 146 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (249)
++++|+|+.+..+..+. .+.++++. .++|+++|+||+|+..... ...++ ...+ ..+
T Consensus 81 ~vl~vvD~~~~~~~~d~--~i~~~l~~---~~~piilVvNK~D~~~~~~--~~~~~-~~lg----------------~~~ 136 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE--EIAKWLRK---SGKPVILVANKIDGKKEDA--VAAEF-YSLG----------------FGE 136 (429)
T ss_pred EEEEEEeCCCCCCHHHH--HHHHHHHH---hCCCEEEEEECccCCcccc--cHHHH-HhcC----------------CCC
Confidence 99999999885443332 34444443 5799999999999875321 11121 2222 136
Q ss_pred EEEeeeccccchHHHHHHHhhhc
Q psy871 226 LFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 226 ~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++++||+.|.|++++++.+.+.+
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc
Confidence 89999999999999999998765
No 241
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=8.4e-16 Score=120.57 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=52.8
Q ss_pred cccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871 108 YFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187 (249)
Q Consensus 108 ~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 187 (249)
.++..+..+.+|||||+.+|..... ..+..+|++++|+|+++..... ....+ ++... .++|+++++||+
T Consensus 65 ~~~~~~~~i~liDTPG~~df~~~~~------~~l~~aD~~IlVvda~~g~~~~-~~~i~-~~~~~---~~~P~iivvNK~ 133 (267)
T cd04169 65 QFEYRDCVINLLDTPGHEDFSEDTY------RTLTAVDSAVMVIDAAKGVEPQ-TRKLF-EVCRL---RGIPIITFINKL 133 (267)
T ss_pred EEeeCCEEEEEEECCCchHHHHHHH------HHHHHCCEEEEEEECCCCccHH-HHHHH-HHHHh---cCCCEEEEEECC
Confidence 3445567899999999988765443 4567899999999998753222 12222 33222 579999999999
Q ss_pred CCCCCCC
Q psy871 188 DKHGAAS 194 (249)
Q Consensus 188 Dl~~~~~ 194 (249)
|+.....
T Consensus 134 D~~~a~~ 140 (267)
T cd04169 134 DREGRDP 140 (267)
T ss_pred ccCCCCH
Confidence 9876533
No 242
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=1.5e-15 Score=134.60 Aligned_cols=159 Identities=25% Similarity=0.223 Sum_probs=104.0
Q ss_pred eceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhh-hhHH-HHhhhhccccc
Q psy871 66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKS-ELQCLLTDESL 143 (249)
Q Consensus 66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~-~~~~~~~~~~~ 143 (249)
..++.++|.+++|||+|++++.+.......+.++.++..........+..+.+|||||.+... .... ...+....+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 457899999999999999999977654333344444444333333335578899999976321 1111 12333456789
Q ss_pred cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871 144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP 223 (249)
Q Consensus 144 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (249)
+|++++|+|+++... .....+...++. .++|+++|+||+|+... .....++.. .. .
T Consensus 355 aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~--~~~~~~~~~-lg----------------~ 410 (712)
T PRK09518 355 ADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQAS--EYDAAEFWK-LG----------------L 410 (712)
T ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccc--hhhHHHHHH-cC----------------C
Confidence 999999999986422 222234444433 68999999999998653 122222221 11 0
Q ss_pred eeEEEeeeccccchHHHHHHHhhhc
Q psy871 224 IELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 224 ~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+++||++|.|++++++++.+.+
T Consensus 411 ~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 411 GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCeEEEECCCCCCchHHHHHHHHhc
Confidence 2357999999999999999998765
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=3.9e-16 Score=136.74 Aligned_cols=186 Identities=18% Similarity=0.120 Sum_probs=96.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCch--hHHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK--TTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk--ssl~~~l~~~~~~~~~~ 96 (249)
.+..+|+++|++++|||||+++|+...-.......+..... ....|+ .++-.++..+...+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~--------------~~~~g~tr~~~~~~~~~d~~~~E~- 86 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERD--------------SKKVGTQGDEIDLALLVDGLAAER- 86 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHH--------------HHhcCCCCCcceeeeeccCCHHHH-
Confidence 45678999999999999999999865432211100000000 000000 0000000000000000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+.+.......++..+..+.++||||++.|..... ..+..+|++++|+|+.....-+.. +.+. ++... .
T Consensus 87 ~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~------~~~~~aD~~llVvda~~g~~~~t~-e~~~-~~~~~--~ 156 (632)
T PRK05506 87 EQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMV------TGASTADLAIILVDARKGVLTQTR-RHSF-IASLL--G 156 (632)
T ss_pred hCCcCceeeeeEEccCCceEEEEECCChHHHHHHHH------HHHHhCCEEEEEEECCCCccccCH-HHHH-HHHHh--C
Confidence 111222222234445566788999999987654333 457889999999999764322211 1111 22221 2
Q ss_pred CCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 177 SCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
..|+++++||+|+.+. ...+++...+..+... ......+++++||++|.|+++
T Consensus 157 ~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~----------~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 157 IRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAK----------LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CCeEEEEEEecccccchhHHHHHHHHHHHHHHHH----------cCCCCccEEEEecccCCCccc
Confidence 3578899999999751 1112222222211100 112336799999999999974
No 244
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.1e-15 Score=128.98 Aligned_cols=156 Identities=22% Similarity=0.218 Sum_probs=101.5
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh-hHH-HHhhhhcccccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKS-ELQCLLTDESLA 144 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~-~~~~~~~~~~~~ 144 (249)
.++.++|.+++|||++++++............+.++..........+..+.+|||||++.... ... ........+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 368899999999999999999776532222223333322222233346789999999876222 111 122334567889
Q ss_pred ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce
Q psy871 145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI 224 (249)
Q Consensus 145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (249)
|++++|+|+.+..+..+. .+..+++. .+.|+++|+||+|+.+. .....++. ..+ ..
T Consensus 82 d~il~vvd~~~~~~~~~~--~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~-~lg----------------~~ 137 (435)
T PRK00093 82 DVILFVVDGRAGLTPADE--EIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFY-SLG----------------LG 137 (435)
T ss_pred CEEEEEEECCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHH-hcC----------------CC
Confidence 999999999885443322 33444443 47999999999997542 22222222 222 12
Q ss_pred eEEEeeeccccchHHHHHHHhh
Q psy871 225 ELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 225 ~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.++++||++|.|++++++.+.+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHh
Confidence 4799999999999999999876
No 245
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=2.7e-16 Score=114.56 Aligned_cols=133 Identities=25% Similarity=0.326 Sum_probs=79.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+...|+++||+|||||+|+..|..+....+.+...+.....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~--------------------------------------- 42 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYN--------------------------------------- 42 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECC---------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEE---------------------------------------
Confidence 45689999999999999999999875544333332222111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC-hhhhHhhHHHHHHHHhccC--CC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD-RERFEESKSELQCLLTDES--LA 176 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~ 176 (249)
.-......+.++|+|||.+...... ..+.+...+.+||+|+|++. +....+..+.+..++.... ..
T Consensus 43 --------~~~~~~~~~~lvD~PGH~rlr~~~~---~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~ 111 (181)
T PF09439_consen 43 --------VNNSKGKKLRLVDIPGHPRLRSKLL---DELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKN 111 (181)
T ss_dssp --------GSSTCGTCECEEEETT-HCCCHHHH---HHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred --------eecCCCCEEEEEECCCcHHHHHHHH---HhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccC
Confidence 0112234588999999988764222 22224677999999999985 4556666667777665433 35
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHh
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYF 202 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~ 202 (249)
..|+++++||+|+....+...+...+
T Consensus 112 ~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 112 KPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp --EEEEEEE-TTSTT---HHHHHHHH
T ss_pred CCCEEEEEeCccccccCCHHHHHHHH
Confidence 79999999999998865555444443
No 246
>KOG0096|consensus
Probab=99.68 E-value=1.2e-16 Score=113.80 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=122.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...+++++|.-|.||||++++.+.+++. .+.+|++.......+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f------------------------------------ 52 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLF------------------------------------ 52 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeee------------------------------------
Confidence 3679999999999999999999999888 466677755555411
Q ss_pred ccceeceecccccc-ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 99 HPTRRVWKDYFPAV-DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..+. ...+-+|||.|++.+...+. .+|=.+.+.+++||++..-+..+...|.+.+.+. ..+
T Consensus 53 ----------~tn~g~irf~~wdtagqEk~gglrd------gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv--~~N 114 (216)
T KOG0096|consen 53 ----------DTNRGQIRFNVWDTAGQEKKGGLRD------GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV--REN 114 (216)
T ss_pred ----------ecccCcEEEEeeecccceeeccccc------ccEEecceeEEEeeeeehhhhhcchHHHHHHHHH--hcC
Confidence 1111 24688999999999888887 6777789999999999999999888888888664 356
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+++.+||.|..........-.+.+ ...+.++++||+++.|.+.-|.||++.+
T Consensus 115 iPiv~cGNKvDi~~r~~k~k~v~~~r-----------------kknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 115 IPIVLCGNKVDIKARKVKAKPVSFHR-----------------KKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred CCeeeeccceeccccccccccceeee-----------------cccceeEEeecccccccccchHHHhhhh
Confidence 99999999999765432222222222 2348899999999999999999999875
No 247
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=1.6e-15 Score=119.04 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=51.2
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
...+..+.++||||+..|..... ..++.+|++++|+|+.+...-+. ...+.. +.. .++|+++++||+|+
T Consensus 60 ~~~~~~i~liDTPG~~df~~~~~------~~l~~aD~ailVVDa~~g~~~~t-~~~~~~-~~~---~~~p~ivviNK~D~ 128 (270)
T cd01886 60 FWKDHRINIIDTPGHVDFTIEVE------RSLRVLDGAVAVFDAVAGVEPQT-ETVWRQ-ADR---YNVPRIAFVNKMDR 128 (270)
T ss_pred EECCEEEEEEECCCcHHHHHHHH------HHHHHcCEEEEEEECCCCCCHHH-HHHHHH-HHH---cCCCEEEEEECCCC
Confidence 34467899999999887665444 67788999999999987532222 112222 222 67999999999998
Q ss_pred CCC
Q psy871 190 HGA 192 (249)
Q Consensus 190 ~~~ 192 (249)
.+.
T Consensus 129 ~~a 131 (270)
T cd01886 129 TGA 131 (270)
T ss_pred CCC
Confidence 763
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=2.5e-15 Score=120.12 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=63.1
Q ss_pred EEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 24 LLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
|+++|.||||||||+|+|++..+. ++++|+.+..+...+.. . +....+ ..+. .+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~----------~-~~~~r~-~~~~---------~~~- 58 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRV----------E-CPCKEL-GVSC---------NPR- 58 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEec----------C-CCchhh-hhhh---------ccc-
Confidence 589999999999999999987753 45566666665552110 0 000000 0000 000
Q ss_pred ceeceeccccc-cceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECC
Q psy871 101 TRRVWKDYFPA-VDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
......+ ....+.+||+||... .........+++..++.+|++++|+|++
T Consensus 59 ----~~~~~~~~~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 59 ----YGKCIDGKRYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ----ccccccCcCcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0000111 234589999999732 1222334567888999999999999997
No 249
>KOG0462|consensus
Probab=99.67 E-value=1e-15 Score=125.56 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=120.7
Q ss_pred ccc-eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh-cCCccc
Q psy871 16 GLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK-DDRLAQ 93 (249)
Q Consensus 16 ~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~-~~~~~~ 93 (249)
.++ .+-+++.|+-+...|||||..+|+.-.-. -..+.+...++..+. ..++..
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~-------------------------i~~~~~q~q~LDkl~vERERGI 108 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGT-------------------------IDNNIGQEQVLDKLQVERERGI 108 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCC-------------------------CCCCCchhhhhhhhhhhhhcCc
Confidence 344 55679999999999999999999642110 012223333332222 111111
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
.. .. .+..+.... +....+.++|||||-.|..-.. +.+..|+++++|+|++.....+.....+..+ +
T Consensus 109 TI-ka-Qtasify~~--~~~ylLNLIDTPGHvDFs~EVs------Rslaac~G~lLvVDA~qGvqAQT~anf~lAf--e- 175 (650)
T KOG0462|consen 109 TI-KA-QTASIFYKD--GQSYLLNLIDTPGHVDFSGEVS------RSLAACDGALLVVDASQGVQAQTVANFYLAF--E- 175 (650)
T ss_pred EE-Ee-eeeEEEEEc--CCceEEEeecCCCcccccceeh------ehhhhcCceEEEEEcCcCchHHHHHHHHHHH--H-
Confidence 00 00 111111111 4456789999999999987777 7889999999999999976666655444444 2
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+..+|.|+||+|+..+ ..+++.+.+.... ..+..+++.+|||+|.|++++++.+.+++
T Consensus 176 --~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF-------------~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 176 --AGLAIIPVLNKIDLPSA-DPERVENQLFELF-------------DIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred --cCCeEEEeeeccCCCCC-CHHHHHHHHHHHh-------------cCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 68999999999999886 5566655555442 22346899999999999999999998876
No 250
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=1.3e-15 Score=114.75 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=67.2
Q ss_pred EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC
Q psy871 115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS 194 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 194 (249)
.+.+||+||........+.+... ..+..+|++++|.|. ++......+.+.+.. .+.|+++|+||+|+.....
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~-~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEE-MKFSEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHH-hCccCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhh
Confidence 58899999976433222211111 224667888887432 233333344444443 4689999999999953111
Q ss_pred ---------HHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeec--cccchHHHHHHHhhhc
Q psy871 195 ---------EEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVL--MRQGYGDGFRWLANYI 248 (249)
Q Consensus 195 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~g~gv~~l~~~l~~~i 248 (249)
.+++.+.++ .+... .........++|.+|+. .+.|+..+.+.+...|
T Consensus 125 ~~~~~~~~~~~~~l~~i~~~~~~~-------~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 125 QRSKPRSFNREQVLQEIRDNCLEN-------LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred hccccccccHHHHHHHHHHHHHHH-------HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 222222222 11100 00112234689999998 6799999999887755
No 251
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.67 E-value=3.4e-17 Score=125.95 Aligned_cols=131 Identities=18% Similarity=0.080 Sum_probs=67.6
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhcccc--ccceEEEEEECCChh---hhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDES--LASSIVFLVDTSDRE---RFEESKSELQCLLTDESLASCPVLILGNKI 187 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~--~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 187 (249)
+..++++|||||.++...+..+...+..+. ..-++++++|+.... .|-.. .+.... -....+.|.+.|+||+
T Consensus 90 ~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s-~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 90 EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLS-IMLRLELPHVNVLSKI 166 (238)
T ss_dssp H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHH-HHHHHTSEEEEEE--G
T ss_pred CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHH-HHhhCCCCEEEeeecc
Confidence 347999999999998888887776666555 466788999997543 34222 222211 1111589999999999
Q ss_pred CCCCCCCHHHHHHHhhhccccc-----------CcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 188 DKHGAASEEEIRQYFGLYGLTT-----------GKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 188 Dl~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+.+.. .+...++........ ..-...+..+. ...+++++|+++++|+++++..+.+.+
T Consensus 167 Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 167 DLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFG-LVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCS-SS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred Ccccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEECCChHHHHHHHHHHHHHh
Confidence 998732 211111111100000 00000011111 113899999999999999999887654
No 252
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=1.6e-15 Score=115.47 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=51.9
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
.+..+.+|||||+..|..... ..+..+|++++|+|+.+....+.. ..+..... .++|+++++||+|+.
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~------~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVT------AALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHH------HHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 356789999999998877666 677899999999999987555432 23333322 468999999999986
No 253
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.66 E-value=1.5e-15 Score=129.31 Aligned_cols=73 Identities=22% Similarity=0.395 Sum_probs=51.6
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
...+..+.+|||||+..|..... ..+..+|++++|+|+++..... ....+ +... ..++|+++++||+|+
T Consensus 75 ~~~~~~inliDTPG~~df~~~~~------~~l~~aD~aIlVvDa~~gv~~~-t~~l~-~~~~---~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 75 PYRDCLINLLDTPGHEDFSEDTY------RTLTAVDSALMVIDAAKGVEPQ-TRKLM-EVCR---LRDTPIFTFINKLDR 143 (526)
T ss_pred EECCEEEEEEECCCchhhHHHHH------HHHHHCCEEEEEEecCCCCCHH-HHHHH-HHHH---hcCCCEEEEEECCcc
Confidence 33467799999999988775444 5567899999999998753222 12222 2222 268999999999998
Q ss_pred CCCC
Q psy871 190 HGAA 193 (249)
Q Consensus 190 ~~~~ 193 (249)
....
T Consensus 144 ~~a~ 147 (526)
T PRK00741 144 DGRE 147 (526)
T ss_pred cccC
Confidence 7643
No 254
>KOG0090|consensus
Probab=99.66 E-value=3.7e-15 Score=108.58 Aligned_cols=175 Identities=23% Similarity=0.274 Sum_probs=118.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+..|.++|+.+||||+|+-.|..+......+.+.+....+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r--------------------------------------- 78 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYR--------------------------------------- 78 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEe---------------------------------------
Confidence 45799999999999999999988866666666665555541
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC-hhhhHhhHHHHHHHHhcc--CCCC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD-RERFEESKSELQCLLTDE--SLAS 177 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~ 177 (249)
..+....++|.|||.+.. ..+..++.+-..+-++++|+|+.. +....+..+.+..++... ....
T Consensus 79 ----------~gs~~~~LVD~PGH~rlR---~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~ 145 (238)
T KOG0090|consen 79 ----------LGSENVTLVDLPGHSRLR---RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNK 145 (238)
T ss_pred ----------ecCcceEEEeCCCcHHHH---HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCC
Confidence 112238899999997653 333344444458999999999976 334455555666666554 3467
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhh----hcccccC---------cccC----------CCCCCCCCceeEEEeeeccc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFG----LYGLTTG---------KVAT----------PRSEMSGRPIELFMCSVLMR 234 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~---------~~~~----------~~~~~~~~~~~~~~~Sa~~g 234 (249)
+|++++.||.|+..+.+.+-+++.++ .+...+. .... ..+......+.+.++|++++
T Consensus 146 ~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~ 225 (238)
T KOG0090|consen 146 PPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG 225 (238)
T ss_pred CCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC
Confidence 89999999999988666655544443 2221111 0000 01122224578999999998
Q ss_pred cchHHHHHHHhhhc
Q psy871 235 QGYGDGFRWLANYI 248 (249)
Q Consensus 235 ~gv~~l~~~l~~~i 248 (249)
+++++-+|+.+.+
T Consensus 226 -~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 226 -EIDQWESWIREAL 238 (238)
T ss_pred -ChHHHHHHHHHhC
Confidence 8999999998764
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=3.4e-15 Score=102.93 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=68.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
+|+|+|++|||||||+|+|++..........+ .+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~---------------------------------------------~T~ 35 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPG---------------------------------------------TTR 35 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTT---------------------------------------------SSS
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccc---------------------------------------------cee
Confidence 68999999999999999998754221111111 111
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
......+......+.++||||........ .....++..+..+|++++|+|++++.. ......+.++ + .+.|
T Consensus 36 ~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~ 109 (116)
T PF01926_consen 36 DPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKP 109 (116)
T ss_dssp SEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSE
T ss_pred eeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCC
Confidence 11001112234566899999965432222 234456677789999999999877322 1122222333 1 6899
Q ss_pred EEEEEec
Q psy871 180 VLILGNK 186 (249)
Q Consensus 180 ~ivv~nK 186 (249)
+++|+||
T Consensus 110 ~i~v~NK 116 (116)
T PF01926_consen 110 IILVLNK 116 (116)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 9999998
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=1.2e-14 Score=123.92 Aligned_cols=72 Identities=24% Similarity=0.378 Sum_probs=50.8
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
++..+..+.+|||||+..|..... ..+..+|++++|+|+++. +......+.+.... .++|+++++||+|
T Consensus 75 ~~~~~~~inliDTPG~~df~~~~~------~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD 143 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHEDFSEDTY------RTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLD 143 (527)
T ss_pred EeeCCeEEEEEECCChhhHHHHHH------HHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcc
Confidence 344567899999999987765444 556789999999999874 22111122333332 6799999999999
Q ss_pred CCC
Q psy871 189 KHG 191 (249)
Q Consensus 189 l~~ 191 (249)
+..
T Consensus 144 ~~~ 146 (527)
T TIGR00503 144 RDI 146 (527)
T ss_pred ccC
Confidence 865
No 257
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=5.4e-15 Score=130.94 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=53.0
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.+|||||+..|..... ..+..+|++++|+|+++........ .+... .. .++|+++++||+|+..
T Consensus 71 ~~~~i~liDtPG~~df~~~~~------~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~-~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVE------RSLRVLDGAVVVFDAVTGVQPQTET-VWRQA-DR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-Hh---cCCCEEEEEECCCCCC
Confidence 456899999999988776555 6678899999999999876554432 23332 22 5799999999999986
Q ss_pred C
Q psy871 192 A 192 (249)
Q Consensus 192 ~ 192 (249)
.
T Consensus 140 ~ 140 (687)
T PRK13351 140 A 140 (687)
T ss_pred C
Confidence 4
No 258
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=8e-15 Score=129.63 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=79.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+-++|+|+|++++|||||+++|....-.... .+.. . .|.+.+- ..... ...
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~------~~~~----~-----------~g~~~~D------~~~~e-~~r 59 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHK------IGEV----H-----------DGAATMD------WMEQE-KER 59 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccc------cccc----c-----------CCccccC------CCHHH-Hhc
Confidence 34579999999999999999999752211100 0000 0 0000000 00000 011
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+.+.......+...+..+.+|||||+..+..... ..+..+|++++|+|+.+....+.. ..+.. +.. .++
T Consensus 60 giti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~------~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~---~~~ 128 (689)
T TIGR00484 60 GITITSAATTVFWKGHRINIIDTPGHVDFTVEVE------RSLRVLDGAVAVLDAVGGVQPQSE-TVWRQ-ANR---YEV 128 (689)
T ss_pred CCCEecceEEEEECCeEEEEEECCCCcchhHHHH------HHHHHhCEEEEEEeCCCCCChhHH-HHHHH-HHH---cCC
Confidence 1222222233334467899999999987765444 567789999999999885444332 12332 222 579
Q ss_pred cEEEEEecCCCCCC
Q psy871 179 PVLILGNKIDKHGA 192 (249)
Q Consensus 179 p~ivv~nK~Dl~~~ 192 (249)
|+++++||+|+...
T Consensus 129 p~ivviNK~D~~~~ 142 (689)
T TIGR00484 129 PRIAFVNKMDKTGA 142 (689)
T ss_pred CEEEEEECCCCCCC
Confidence 99999999999864
No 259
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=2.2e-15 Score=118.97 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=50.3
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.+|||||+..+..... ..+..+|++++|+|+++....... ..+.. +.. .++|.++++||+|+..
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~------~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~-~~~---~~~p~iivvNK~D~~~ 130 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETR------AALRAADAALVVVSAQSGVEVGTE-KLWEF-ADE---AGIPRIIFINKMDRER 130 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHH------HHHHHCCEEEEEEeCCCCCCHHHH-HHHHH-HHH---cCCCEEEEEECCccCC
Confidence 356788999999877655444 556789999999999986544322 12222 222 5789999999999986
Q ss_pred C
Q psy871 192 A 192 (249)
Q Consensus 192 ~ 192 (249)
.
T Consensus 131 ~ 131 (268)
T cd04170 131 A 131 (268)
T ss_pred C
Confidence 5
No 260
>KOG1707|consensus
Probab=99.63 E-value=2.6e-15 Score=124.17 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=110.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++.+||+|+|..|+|||||+-+|+.+++....|.+- ..+..|
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---~~i~IP---------------------------------- 48 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---PRILIP---------------------------------- 48 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccC---CccccC----------------------------------
Confidence 4678899999999999999999999988775444332 222000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--C
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--L 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~ 175 (249)
. ... .......++|++..+.-..... ..++.+|+++++++.+++.+...+...|..+++... .
T Consensus 49 ----a----dvt-Pe~vpt~ivD~ss~~~~~~~l~------~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~ 113 (625)
T KOG1707|consen 49 ----A----DVT-PENVPTSIVDTSSDSDDRLCLR------KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDY 113 (625)
T ss_pred ----C----ccC-cCcCceEEEecccccchhHHHH------HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCC
Confidence 0 000 1112277899975332222212 456789999999999999999887766666555432 2
Q ss_pred CCCcEEEEEecCCCCCCCCH--HH-HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 176 ASCPVLILGNKIDKHGAASE--EE-IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.++|+|+|+||+|.....+. +. ....+..+. .-..+++|||++-.++.|+|-+-.+.
T Consensus 114 ~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~---------------EiEtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 114 HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA---------------EIETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred ccCCEEEEeeccCCccccccchhHHHHHHHHHhH---------------HHHHHHhhhhhhhhhhHhhhhhhhhe
Confidence 57999999999999774332 32 444444433 11368999999999999999776554
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.62 E-value=1.9e-14 Score=127.15 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=50.8
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+..+.++||||+..|.... ...+..+|++++|+|+......++. ..+.. +.. .++|.++++||+|+.
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev------~~al~~~D~~vlVvda~~g~~~qt~-~~~~~-~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEV------ERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQ-ADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHH------HHHHHHcCEEEEEEECCCCcchhhH-HHHHH-HHH---cCCCEEEEEECCCCC
Confidence 346789999999987765433 3666788999999999875433332 12333 222 678999999999998
Q ss_pred CCC
Q psy871 191 GAA 193 (249)
Q Consensus 191 ~~~ 193 (249)
...
T Consensus 141 ~~~ 143 (693)
T PRK00007 141 GAD 143 (693)
T ss_pred CCC
Confidence 643
No 262
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.62 E-value=3.4e-15 Score=119.44 Aligned_cols=198 Identities=16% Similarity=0.142 Sum_probs=103.6
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc--cccc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL--AQPV 95 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~--~~~~ 95 (249)
..+.+.|+|+|+||||||||+++|...-- ..+..+..+..+ ....+.|....|...-+.++...+. ....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~-----~~g~~v~vi~~D---p~s~~~~gallgd~~r~~~~~~~~~~~~r~~ 124 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLI-----EQGHKVAVLAVD---PSSTRTGGSILGDKTRMERLSRHPNAFIRPS 124 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEeC---CCccccchhhhchHhHHHhhcCCCCeEEEec
Confidence 35678999999999999999999753211 111122222211 1111222222222222333222111 1111
Q ss_pred CCcccc------eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHH
Q psy871 96 PTLHPT------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCL 169 (249)
Q Consensus 96 ~~~~~~------~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~ 169 (249)
++.... ....-..+......++++||+|...-... ....+|.+++|.+....+..+.......
T Consensus 125 ~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---------i~~~aD~vlvv~~p~~gd~iq~~k~gi~-- 193 (332)
T PRK09435 125 PSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---------VAGMVDFFLLLQLPGAGDELQGIKKGIM-- 193 (332)
T ss_pred CCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---------HHHhCCEEEEEecCCchHHHHHHHhhhh--
Confidence 010000 00011122334556899999996622211 1356999999988666665554332122
Q ss_pred HhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 170 LTDESLASCPVLILGNKIDKHGAASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 170 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....++|+||+|+......+.....++ .+.... .....+..+++++||+++.|++++++.+.+++
T Consensus 194 -------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~-------~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 194 -------ELADLIVINKADGDNKTAARRAAAEYRSALRLLR-------PKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred -------hhhheEEeehhcccchhHHHHHHHHHHHHHhccc-------ccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 233489999999986433332222222 111000 00012335899999999999999999998864
No 263
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.8e-15 Score=114.96 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=114.0
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCC--CcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL--HPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
.+.+.+|+.+|+...|||||+.+|++--.......+ +.... + ...+..+.-.+.++..
T Consensus 7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIk-L----GYAd~~i~kC~~c~~~--------------- 66 (415)
T COG5257 7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIK-L----GYADAKIYKCPECYRP--------------- 66 (415)
T ss_pred CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEE-e----ccccCceEeCCCCCCC---------------
Confidence 367899999999999999999999874322111000 00000 0 1122222222222111
Q ss_pred CCcccceeceecccc--ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 96 PTLHPTRRVWKDYFP--AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~--~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
........+...-. .--..+.++|.|||+.+.+..- +....-|+.++|++++.++.--...+.+..+--
T Consensus 67 -~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATML------sGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-- 137 (415)
T COG5257 67 -ECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATML------SGAALMDGALLVIAANEPCPQPQTREHLMALEI-- 137 (415)
T ss_pred -cccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHh------cchhhhcceEEEEecCCCCCCCchHHHHHHHhh--
Confidence 01111111111000 1123578999999987655444 777888999999999998776555555544311
Q ss_pred CCCCCcEEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..-..++++-||+|+++.... ++.++..+.. ........|++++||..+.|+|-+++.+.++|
T Consensus 138 -igik~iiIvQNKIDlV~~E~AlE~y~qIk~Fv-----------kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 138 -IGIKNIIIVQNKIDLVSRERALENYEQIKEFV-----------KGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred -hccceEEEEecccceecHHHHHHHHHHHHHHh-----------cccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 145779999999999873222 2222222211 12334558999999999999999999999876
No 264
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=2.4e-14 Score=126.53 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=78.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.++|+++|++++|||||+++|+...-... .+ +.+ . .| ++.+...- .+. ..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~--~~----~~v----~-----------~~-~~~~D~~~----~E~--~rg 58 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSH--KI----GEV----H-----------DG-AATMDWME----QEQ--ERG 58 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcc--cc----ccc----c-----------CC-ccccCCCh----hHh--hcC
Confidence 457999999999999999999974211100 00 001 0 00 00000000 000 111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
.+.......+...+..+.++||||+..|.... ...+..+|++++|+|+.+....++. ..+.. +.. .++|
T Consensus 59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~------~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~-~~~---~~~p 127 (691)
T PRK12739 59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEV------ERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQ-ADK---YGVP 127 (691)
T ss_pred CCccceeEEEEECCEEEEEEcCCCHHHHHHHH------HHHHHHhCeEEEEEeCCCCCCHHHH-HHHHH-HHH---cCCC
Confidence 12222222233356789999999987765433 3667889999999999875433322 12222 222 6799
Q ss_pred EEEEEecCCCCCC
Q psy871 180 VLILGNKIDKHGA 192 (249)
Q Consensus 180 ~ivv~nK~Dl~~~ 192 (249)
+++++||+|+...
T Consensus 128 ~iv~iNK~D~~~~ 140 (691)
T PRK12739 128 RIVFVNKMDRIGA 140 (691)
T ss_pred EEEEEECCCCCCC
Confidence 9999999999864
No 265
>KOG0458|consensus
Probab=99.61 E-value=5.2e-16 Score=128.24 Aligned_cols=188 Identities=20% Similarity=0.201 Sum_probs=117.0
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++.+..++++|+.++|||||+.+|+..--.....+...... .....||.++..++......+.. .
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~--------------es~~~Gk~Sf~yawiLDeT~eER-e 238 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLER--------------ESKNLGKSSFAYAWILDETKEER-E 238 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHH--------------HHHhcCCcceeeeEEeccchhhh-h
Confidence 45778999999999999999999985322211111111111 12445666666666555443222 2
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDES 174 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~ 174 (249)
.+.+-......++.....+.+.|+||+..|....- .....+|+.++|+|++.. .+|. ......++.....
T Consensus 239 rGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi------~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr 311 (603)
T KOG0458|consen 239 RGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMI------SGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLR 311 (603)
T ss_pred cceeEEeeeEEEecCceeEEEecCCCccccchhhh------ccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHH
Confidence 22233333455666777899999999988877666 778899999999999873 3443 2222222221111
Q ss_pred -CCCCcEEEEEecCCCCC--CCC----HHHHHHHh-hhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 175 -LASCPVLILGNKIDKHG--AAS----EEEIRQYF-GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 175 -~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
+.-..++|++||+|+++ +.. ...+..++ +.++ +....+.++|||+.+|+|+..
T Consensus 312 ~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~g------------f~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 312 SLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCG------------FKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcC------------cccCCcceEecccccCCcccc
Confidence 13467899999999987 212 23334444 3333 344557899999999999843
No 266
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.61 E-value=3.6e-16 Score=118.45 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=109.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc--ccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~--~~~ 96 (249)
.+.++|+|.|+||+|||||+++|...-. ..+..+..+-++|.+ .+.|...-|...=++.+..++-.. ..+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~-----~~g~~VaVlAVDPSS---p~tGGAlLGDRiRM~~~~~d~~vfIRS~a 98 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELR-----ERGKRVAVLAVDPSS---PFTGGALLGDRIRMQELSRDPGVFIRSMA 98 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-GGG---GCC---SS--GGGCHHHHTSTTEEEEEE-
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHh-----hcCCceEEEEECCCC---CCCCCcccccHHHhcCcCCCCCEEEeecC
Confidence 4678999999999999999999975321 124444555443333 245556666655555555433221 111
Q ss_pred Ccccc------eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871 97 TLHPT------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL 170 (249)
Q Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~ 170 (249)
..+.. ....-..++.....++++.|.|....+-.. ...+|.+++|+-+...+..+.++.-+.++
T Consensus 99 tRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi- 168 (266)
T PF03308_consen 99 TRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---------ADMADTVVLVLVPGLGDEIQAIKAGIMEI- 168 (266)
T ss_dssp --SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---------HTTSSEEEEEEESSTCCCCCTB-TTHHHH-
T ss_pred cCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---------HHhcCeEEEEecCCCccHHHHHhhhhhhh-
Confidence 11110 011112234455668889998854322222 25799999999999888888776666665
Q ss_pred hccCCCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 171 TDESLASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+-++|+||+|+.. +....++...+..... ....+..|++.+||.++.|++++++.+.++
T Consensus 169 --------aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 169 --------ADIFVVNKADRPGADRTVRDLRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp ---------SEEEEE--SHHHHHHHHHHHHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred --------ccEEEEeCCChHHHHHHHHHHHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4489999999644 2223444544443321 123355799999999999999999999875
No 267
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.60 E-value=3.9e-14 Score=106.39 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=67.1
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA- 192 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~- 192 (249)
...+++++.|..-...... ..+|.++.|+|+.+.+..... .... -...-++++||+|+.+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---------~l~~~~i~vvD~~~~~~~~~~--~~~q-------i~~ad~~~~~k~d~~~~~ 153 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---------ELADLTIFVIDVAAGDKIPRK--GGPG-------ITRSDLLVINKIDLAPMV 153 (199)
T ss_pred CCEEEEECCCCCcccccch---------hhhCcEEEEEEcchhhhhhhh--hHhH-------hhhccEEEEEhhhccccc
Confidence 4567789988421111111 236789999999986553210 0001 12334899999999863
Q ss_pred -CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 -ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+.+.+.++.+. ...+++++||++|+|++++++++.++.
T Consensus 154 ~~~~~~~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 154 GADLGVMERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred cccHHHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34555566666544 347899999999999999999998763
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=4.1e-14 Score=116.54 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=65.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++|+++|.||||||||+|+|++.++. ++.+|+.+..+...++. + +....+- .+. .+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~----------~-~~~~r~~-~~~---------~~ 60 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRV----------E-CPCKELG-VKC---------NP 60 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeecc----------C-Cchhhhh-hhh---------cc
Confidence 58999999999999999999987764 35566666666552110 0 0011110 000 00
Q ss_pred ccceeceecccc-ccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871 99 HPTRRVWKDYFP-AVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
.. . .... .....+.++|+||...- ........+++..++.+|++++|+|+.
T Consensus 61 ~~--~---~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 61 RN--G---KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cc--c---cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00 0 0001 12245889999996432 222334567888899999999999996
No 269
>KOG1191|consensus
Probab=99.59 E-value=8.1e-15 Score=119.15 Aligned_cols=174 Identities=15% Similarity=0.081 Sum_probs=103.8
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.-++.+.|+|+|+||+|||||+|+|...+.+...|..+.+.+.
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDa------------------------------------- 306 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDA------------------------------------- 306 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhh-------------------------------------
Confidence 3356689999999999999999999887766555444444443
Q ss_pred CcccceeceeccccccceEEEEEeCCCchh-hhhhHH-H-HhhhhccccccceEEEEEECCChhhhHhh--HHHHHHHHh
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKS-E-LQCLLTDESLASSIVFLVDTSDRERFEES--KSELQCLLT 171 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~-~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~ 171 (249)
....++-....+.+.||+|..+ -....+ . ....-..+.++|++++|+|+..-..-++. .+.+...-.
T Consensus 307 --------iea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~ 378 (531)
T KOG1191|consen 307 --------IEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGV 378 (531)
T ss_pred --------heeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhcc
Confidence 3344444556789999999654 111111 1 12222456789999999999442222222 122222210
Q ss_pred -----ccCCCCCcEEEEEecCCCCCCCCHHH--HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 172 -----DESLASCPVLILGNKIDKHGAASEEE--IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 172 -----~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
.......|++++.||.|+........ ...+.... -....-...++|+++++|+++|...|
T Consensus 379 g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~-------------~~~~~~i~~~vs~~tkeg~~~L~~al 445 (531)
T KOG1191|consen 379 GLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE-------------GRSVFPIVVEVSCTTKEGCERLSTAL 445 (531)
T ss_pred ceEEEeccccccceEEEechhhccCccccccCCceeccccc-------------cCcccceEEEeeechhhhHHHHHHHH
Confidence 00112378999999999976411111 11111110 00122345569999999999999988
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+.+
T Consensus 446 l~~~ 449 (531)
T KOG1191|consen 446 LNIV 449 (531)
T ss_pred HHHH
Confidence 7754
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.3e-14 Score=96.49 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=79.9
Q ss_pred EEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH
Q psy871 118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE 197 (249)
Q Consensus 118 v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 197 (249)
.+|||| +|.+...++..++.....+|++++|-.++++.+.... .+..+ ..+|+|-|++|.|+.++...+.
T Consensus 41 ~IDTPG--Ey~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed~dI~~ 110 (148)
T COG4917 41 DIDTPG--EYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP--GFLDI------GVKKVIGVVTKADLAEDADISL 110 (148)
T ss_pred ccCCch--hhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc--ccccc------cccceEEEEecccccchHhHHH
Confidence 368988 4566667777777788899999999999997554332 11122 4577999999999997667777
Q ss_pred HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 198 IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.++++...+ --++|.+|+.+..|+++++.+|..
T Consensus 111 ~~~~L~eaG----------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 111 VKRWLREAG----------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHcC----------------CcceEEEeccCcccHHHHHHHHHh
Confidence 777777665 257999999999999999999875
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.58 E-value=1.7e-13 Score=103.27 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=92.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++|+++|.+|||||||+|+|++........... ..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~--------------------------------------------~~T 36 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSAS--------------------------------------------SVT 36 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCC--------------------------------------------Ccc
Confidence 479999999999999999998765431110000 000
Q ss_pred eeceeccccccceEEEEEeCCCchhhhh----hHH-HHhhhhccccccceEEEEEECCChhh-hHhhHHHHHHHHhccCC
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEE----SKS-ELQCLLTDESLASSIVFLVDTSDRER-FEESKSELQCLLTDESL 175 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~----~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~ 175 (249)
...........+..+.++||||...... ... ............|++++|+++.+... ...+.+.+.++... .
T Consensus 37 ~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~ 114 (196)
T cd01852 37 KTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--K 114 (196)
T ss_pred cccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--H
Confidence 0000000111345789999999665421 122 22223334577899999999987211 11222233332211 0
Q ss_pred CCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEee-----eccccchHHHHH
Q psy871 176 ASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCS-----VLMRQGYGDGFR 242 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-----a~~g~gv~~l~~ 242 (249)
.-.++++++|++|....... ..+...++.++ -.++..+ +..+.++++|++
T Consensus 115 ~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-----------------~r~~~f~~~~~~~~~~~q~~~Ll~ 177 (196)
T cd01852 115 VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-----------------GRYVAFNNKAKGEEQEQQVKELLA 177 (196)
T ss_pred hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-----------------CeEEEEeCCCCcchhHHHHHHHHH
Confidence 12689999999998764332 33344444333 2333333 567889999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
.+.+.+
T Consensus 178 ~i~~~~ 183 (196)
T cd01852 178 KVESMV 183 (196)
T ss_pred HHHHHH
Confidence 887654
No 272
>KOG1144|consensus
Probab=99.57 E-value=2.7e-14 Score=120.83 Aligned_cols=191 Identities=18% Similarity=0.189 Sum_probs=116.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..|.+.+||+|+..+|||-|+..+.+.++.... .++...-+|........+..+...
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqege--------------aggitqqIgAt~fp~~ni~e~tk~--------- 528 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGE--------------AGGITQQIGATYFPAENIREKTKE--------- 528 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcccccccc--------------ccceeeeccccccchHHHHHHHHH---------
Confidence 357889999999999999999999887655211 222333334444333333222110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
....... +..--.++++||||++.|..++. ++...||.+|+|+|+-+.-..+.+. -..+++. .+
T Consensus 529 ---~~~~~K~--~~kvPg~lvIdtpghEsFtnlRs------rgsslC~~aIlvvdImhGlepqtiE--Si~lLR~---rk 592 (1064)
T KOG1144|consen 529 ---LKKDAKK--RLKVPGLLVIDTPGHESFTNLRS------RGSSLCDLAILVVDIMHGLEPQTIE--SINLLRM---RK 592 (1064)
T ss_pred ---HHhhhhh--hcCCCeeEEecCCCchhhhhhhh------ccccccceEEEEeehhccCCcchhH--HHHHHHh---cC
Confidence 0000000 01112588999999999999999 7778999999999998853333331 1222332 78
Q ss_pred CcEEEEEecCCCCCC------------------CCHHHHHHHhhhcccccCcc-----cCCCCCCCCCceeEEEeeeccc
Q psy871 178 CPVLILGNKIDKHGA------------------ASEEEIRQYFGLYGLTTGKV-----ATPRSEMSGRPIELFMCSVLMR 234 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Sa~~g 234 (249)
.|+||.+||+|..-. ....++...++.+...+... ..+-.......+.++|+||.+|
T Consensus 593 tpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG 672 (1064)
T KOG1144|consen 593 TPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG 672 (1064)
T ss_pred CCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC
Confidence 999999999996431 01122222222222111111 1122223335689999999999
Q ss_pred cchHHHHHHHhhh
Q psy871 235 QGYGDGFRWLANY 247 (249)
Q Consensus 235 ~gv~~l~~~l~~~ 247 (249)
+|+.+|+-+|.+.
T Consensus 673 eGipdLl~llv~l 685 (1064)
T KOG1144|consen 673 EGIPDLLLLLVQL 685 (1064)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998875
No 273
>PTZ00258 GTP-binding protein; Provisional
Probab=99.57 E-value=7.9e-14 Score=113.66 Aligned_cols=112 Identities=19% Similarity=0.112 Sum_probs=72.5
Q ss_pred hhcccccceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh
Q psy871 11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK 87 (249)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~ 87 (249)
-.-+++-.....+|+|+|.||||||||+|+|++.... ++.+|+.+..+.+.++ ...-..+. .+.
T Consensus 11 ~~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~------------d~r~~~l~-~~~ 77 (390)
T PTZ00258 11 KKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP------------DERFDWLC-KHF 77 (390)
T ss_pred cchhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc------------cchhhHHH-HHc
Confidence 3445666677789999999999999999999887654 4666777766665211 00000000 000
Q ss_pred cCCcccccCCcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871 88 DDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
.--...+..+.++|+||...- .........++..++.+|++++|+|+.
T Consensus 78 -------------------~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 78 -------------------KPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred -------------------CCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 000122345889999996532 222334567888899999999999984
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.55 E-value=2.4e-14 Score=110.02 Aligned_cols=199 Identities=17% Similarity=0.162 Sum_probs=123.5
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc--cc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL--AQ 93 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~--~~ 93 (249)
....+.++|+|+|+||||||||+.+|...- ...+..+..+-+ ++...+.|...-|...-++++..++- .-
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l-----~~~G~rVaVlAV---DPSSp~TGGsiLGDRiRM~~~~~~~~vFiR 117 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGREL-----RERGHRVAVLAV---DPSSPFTGGSILGDRIRMQRLAVDPGVFIR 117 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHH-----HHCCcEEEEEEE---CCCCCCCCccccccHhhHHhhccCCCeEEe
Confidence 344678899999999999999999996432 122333333432 23334556666676666666664332 22
Q ss_pred ccCCcccceece------eccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHH
Q psy871 94 PVPTLHPTRRVW------KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ 167 (249)
Q Consensus 94 ~~~~~~~~~~~~------~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~ 167 (249)
+.+..+..-... -..++...+.++++.|.|....+.... +-+|.+++|.-+.-.+..+.++.-+.
T Consensus 118 s~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~---------~~aDt~~~v~~pg~GD~~Q~iK~Gim 188 (323)
T COG1703 118 SSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA---------NMADTFLVVMIPGAGDDLQGIKAGIM 188 (323)
T ss_pred ecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh---------hhcceEEEEecCCCCcHHHHHHhhhh
Confidence 222222211111 122345556689999998654333222 57999999998888777776655444
Q ss_pred HHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 168 CLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 168 ~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+ +.-++|+||.|.... ....++...++... +......+..+++.+||..|+|++++++.+.+
T Consensus 189 E---------iaDi~vINKaD~~~A~~a~r~l~~al~~~~--------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 189 E---------IADIIVINKADRKGAEKAARELRSALDLLR--------EVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred h---------hhheeeEeccChhhHHHHHHHHHHHHHhhc--------ccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 4 455899999996442 12223333333321 11224456689999999999999999999988
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
+.
T Consensus 252 h~ 253 (323)
T COG1703 252 HR 253 (323)
T ss_pred HH
Confidence 64
No 275
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.55 E-value=5.3e-14 Score=106.81 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+++++|+|.-.... ......+..+.|+|+.+.+..... ... ....|.++++||+|+.+.
T Consensus 102 ~~d~IiIEt~G~l~~~~---------~~~~~~~~~i~Vvd~~~~d~~~~~---~~~------~~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---------DFDLGEHMRVVLLSVTEGDDKPLK---YPG------MFKEADLIVINKADLAEA 163 (207)
T ss_pred CCCEEEEecCCCcCCCc---------ccccccCeEEEEEecCcccchhhh---hHh------HHhhCCEEEEEHHHcccc
Confidence 34678899998311110 111234555678888765432110 111 135788999999999763
Q ss_pred C--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 A--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
. ...+..+.++... +..+++++||++|.|++++++++.++.
T Consensus 164 ~~~~~~~~~~~l~~~~---------------~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMKADAKKIN---------------PEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2 2334444444332 347899999999999999999998764
No 276
>KOG1673|consensus
Probab=99.54 E-value=7.8e-14 Score=96.31 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=108.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.||.++|++..|||||+-...+++.. ....+.+...-..
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdk--------------------------------------- 60 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDK--------------------------------------- 60 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceee---------------------------------------
Confidence 568999999999999998887665443 1111222111111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
..++.+.+..+.+||..|++++..... -.-+.+-+++++||.++++++..+.+|+.+... .+...+|
T Consensus 61 ------t~~i~~t~IsfSIwdlgG~~~~~n~lP------iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~-~NktAiP 127 (205)
T KOG1673|consen 61 ------TVSIRGTDISFSIWDLGGQREFINMLP------IACKDSVAILFMFDLTRRSTLNSIKEWYRQARG-LNKTAIP 127 (205)
T ss_pred ------EEEecceEEEEEEEecCCcHhhhccCc------eeecCcEEEEEEEecCchHHHHHHHHHHHHHhc-cCCccce
Confidence 123456677889999999987766555 333567788999999999999999988888643 3334455
Q ss_pred EEEEEecCCCCCCCCHH-------HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 180 VLILGNKIDKHGAASEE-------EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++|++|-|+.-+.+++ +.+.+.+..+ .+.|+||+....|+..+|+.+..+
T Consensus 128 -ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-----------------AsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 128 -ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-----------------ASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred -EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-----------------CcEEEeeccccccHHHHHHHHHHH
Confidence 5579999985533332 2233333333 789999999999999999876544
No 277
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=2.5e-13 Score=120.20 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=51.6
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+..+.++||||+..+..... ..+..+|++++|+|++......... .+... .. .++|+++++||+|+.
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~------~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~-~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVE------RALRVLDGAVVVVCAVGGVEPQTET-VWRQA-EK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHH------HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHH-HH---cCCCEEEEEECCCCC
Confidence 3467799999999987655444 5567899999999998865544332 22322 22 579999999999987
Q ss_pred CC
Q psy871 191 GA 192 (249)
Q Consensus 191 ~~ 192 (249)
..
T Consensus 126 ~~ 127 (668)
T PRK12740 126 GA 127 (668)
T ss_pred CC
Confidence 64
No 278
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.52 E-value=3.3e-13 Score=106.50 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.3
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA 47 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~ 47 (249)
.++|+|+|++|+|||||+|+|.+..+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~ 30 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLI 30 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCc
Confidence 569999999999999999999887655
No 279
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=1.7e-13 Score=111.12 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=84.9
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
....+.++|||||-.|.--.. +++..|-+.++|+|++..-..+.+.+.+..+ + .+.-++-|+||+||+.
T Consensus 74 ~~Y~lnlIDTPGHVDFsYEVS------RSLAACEGalLvVDAsQGveAQTlAN~YlAl--e---~~LeIiPViNKIDLP~ 142 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYEVS------RSLAACEGALLVVDASQGVEAQTLANVYLAL--E---NNLEIIPVLNKIDLPA 142 (603)
T ss_pred CEEEEEEcCCCCccceEEEeh------hhHhhCCCcEEEEECccchHHHHHHHHHHHH--H---cCcEEEEeeecccCCC
Confidence 456789999999988865555 6678899999999999976666665555544 2 6788999999999988
Q ss_pred CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
. ..+.+.+.++..- .......+.||||+|.|++++++.+.+++
T Consensus 143 A-dpervk~eIe~~i-------------Gid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 143 A-DPERVKQEIEDII-------------GIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred C-CHHHHHHHHHHHh-------------CCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 5 4444444444321 12235689999999999999999998865
No 280
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=5.3e-13 Score=101.50 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=104.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..++.+++++|..|+|||||+|+|..++..... .+|. +
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--------------------~vg~----------------------~ 73 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--------------------KVGV----------------------G 73 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--------------------eccc----------------------C
Confidence 456778899999999999999999865544211 0110 1
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhH-HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+...+ ..+. ...+.+||+||.+.-..-. +.-..+...+...|.+++++++.+++---+. ..+..++.. ..
T Consensus 74 t~~~~~~~-~~~~--~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~--~~ 147 (296)
T COG3596 74 TDITTRLR-LSYD--GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIIL--GL 147 (296)
T ss_pred CCchhhHH-hhcc--ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHh--cc
Confidence 11111111 1122 2569999999977533332 2233455778889999999999886432222 244444332 24
Q ss_pred CCcEEEEEecCCCCCCC---------CHHHHHHHh----hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871 177 SCPVLILGNKIDKHGAA---------SEEEIRQYF----GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
+.|+++++|.+|..... ....+.+++ .... ......-|++.+|.+.+.|++.+...
T Consensus 148 ~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~-----------~~~q~V~pV~~~~~r~~wgl~~l~~a 216 (296)
T COG3596 148 DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG-----------RLFQEVKPVVAVSGRLPWGLKELVRA 216 (296)
T ss_pred CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH-----------HHHhhcCCeEEeccccCccHHHHHHH
Confidence 58999999999975421 111111111 1111 01112357889999999999999999
Q ss_pred Hhhhc
Q psy871 244 LANYI 248 (249)
Q Consensus 244 l~~~i 248 (249)
+.+.+
T Consensus 217 li~~l 221 (296)
T COG3596 217 LITAL 221 (296)
T ss_pred HHHhC
Confidence 88754
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.48 E-value=6.7e-13 Score=119.72 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=73.4
Q ss_pred EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+.+|||||++.|...+. ..+..+|++++|+|+++ +.++..+ . ++.. .++|+++++||+|+..
T Consensus 527 ~i~fiDTPGhe~F~~lr~------~g~~~aDivlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRK------RGGSLADLAVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred cEEEEECCCcHHHHHHHH------hhcccCCEEEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCcc
Confidence 488999999999977766 45678999999999987 3333322 2 2222 4689999999999964
Q ss_pred CCC------------------HHHHHHHhhhcc---cccCccc---CCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 192 AAS------------------EEEIRQYFGLYG---LTTGKVA---TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 192 ~~~------------------~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
... .+++...+..+. ...+... .... .....++++++||++|+|+++|+.+|..
T Consensus 593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~-d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 593 GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQ-DFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhh-hcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 211 111111110000 0000000 0011 1134689999999999999999988753
No 282
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.47 E-value=3.2e-13 Score=108.10 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=66.2
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
+..+..++++||+|..... . .....+|.++++.+....+.+.. ....+ ..+|.++++||+|+
T Consensus 123 ~~~g~D~viidT~G~~~~e--~-------~i~~~aD~i~vv~~~~~~~el~~---~~~~l------~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQSE--V-------DIANMADTFVVVTIPGTGDDLQG---IKAGL------MEIADIYVVNKADG 184 (300)
T ss_pred HhCCCCEEEEeCCCCchhh--h-------HHHHhhceEEEEecCCccHHHHH---HHHHH------hhhccEEEEEcccc
Confidence 3345679999999954211 1 12456788888865443332222 22222 46788999999999
Q ss_pred CCCCCHHHHHHHh----hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 190 HGAASEEEIRQYF----GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 190 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
............+ ..+. .....+..+++++||+++.|++++++++.+++
T Consensus 185 ~~~~~~~~~~~~~~~~l~~l~----------~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 185 EGATNVTIARLMLALALEEIR----------RREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred cchhHHHHHHHHHHHHHhhcc----------ccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 7643322211111 1111 00011224699999999999999999998753
No 283
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=2.2e-12 Score=104.11 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=66.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+|+++|.||||||||+|+|++.... ++.+|+.+..+.+.++. + ....+..+. .+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d----------~---r~~~l~~~~---------~p 60 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPD----------P---RLDKLAEIV---------KP 60 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEecc----------c---cchhhHHhc---------CC
Confidence 68999999999999999999998743 46778887777763210 0 000000000 00
Q ss_pred ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
. ......+.++|+||...- .........++..++.+|++++|+|+.
T Consensus 61 ~----------~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 61 K----------KIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred c----------cccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 0 112345889999996532 222335567889999999999999984
No 284
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.46 E-value=1.5e-13 Score=107.37 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 176 ASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
...+-++|+||+|+... ...+++.+.++... +..+++++||++|+|++++++||.++
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln---------------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVN---------------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC---------------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999763 22444444444433 45889999999999999999999874
No 285
>KOG4423|consensus
Probab=99.46 E-value=5.7e-15 Score=105.00 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=113.2
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++.|+|..|+|||+++.+....+++. +..|++....--
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalk----------------------------------------- 65 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALK----------------------------------------- 65 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHH-----------------------------------------
Confidence 88999999999999999987766652 222333211110
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC---CC
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA---SC 178 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~ 178 (249)
.-.|. ...-..+.+||..|+++|..... -+|+.+++..+|||+++..+|+....|.+++-....+. -.
T Consensus 66 Vl~wd---d~t~vRlqLwdIagQerfg~mtr------Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv 136 (229)
T KOG4423|consen 66 VLQWD---DKTIVRLQLWDIAGQERFGNMTR------VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPV 136 (229)
T ss_pred HhccC---hHHHHHHHHhcchhhhhhcceEE------EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcc
Confidence 00010 11122367899999999988887 78899999999999999999999888888875433332 37
Q ss_pred cEEEEEecCCCCCCCC---HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAAS---EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++..||||...... ...+.++.+.- ....++++|+|.+.+++|..+.|.+++
T Consensus 137 ~~vllankCd~e~~a~~~~~~~~d~f~ken----------------gf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 137 PCVLLANKCDQEKSAKNEATRQFDNFKKEN----------------GFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred hheeccchhccChHhhhhhHHHHHHHHhcc----------------CccceeeeccccccChhHHHHHHHHHH
Confidence 8999999999865322 23344443332 235799999999999999999888764
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.43 E-value=2.2e-12 Score=99.09 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=85.6
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
.+...++..|+++|++|+|||||+++|.+..... +... ..
T Consensus 33 ~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~---~~~~--------------------~~----------------- 72 (225)
T cd01882 33 TPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ---NISD--------------------IK----------------- 72 (225)
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcccC---cccc--------------------cc-----------------
Confidence 3556778899999999999999999996531110 0000 00
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
+. ... ....+..+.++|+||.. . ..+...+.+|++++|+|++........ .+...+..
T Consensus 73 --g~---i~i----~~~~~~~i~~vDtPg~~--~-------~~l~~ak~aDvVllviDa~~~~~~~~~--~i~~~l~~-- 130 (225)
T cd01882 73 --GP---ITV----VTGKKRRLTFIECPNDI--N-------AMIDIAKVADLVLLLIDASFGFEMETF--EFLNILQV-- 130 (225)
T ss_pred --cc---EEE----EecCCceEEEEeCCchH--H-------HHHHHHHhcCEEEEEEecCcCCCHHHH--HHHHHHHH--
Confidence 10 000 11234567899999843 1 222345789999999999875433322 33333333
Q ss_pred CCCCcEE-EEEecCCCCCCCC-HHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871 175 LASCPVL-ILGNKIDKHGAAS-EEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235 (249)
Q Consensus 175 ~~~~p~i-vv~nK~Dl~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 235 (249)
.+.|.+ +|+||+|+.+... .+++...++. +.. ......+++++||++..
T Consensus 131 -~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 131 -HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWT-----------EVYQGAKLFYLSGIVHG 182 (225)
T ss_pred -cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHH-----------hhCCCCcEEEEeeccCC
Confidence 467854 5999999975321 2333333322 110 01134789999999863
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.2e-12 Score=102.67 Aligned_cols=179 Identities=21% Similarity=0.165 Sum_probs=106.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCC---CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV---PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+...+++-+|...-|||||+.||+...-.... .++...... .. ...++-.+ ++.-..+. ..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~---------~~----t~g~~~D~--ALLvDGL~-AE 67 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKR---------KG----TQGEKIDL--ALLVDGLE-AE 67 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhccccc---------cc----CCCCccch--hhhhhhhH-HH
Confidence 34569999999999999999999865322111 011111100 00 00111111 11111110 00
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDES 174 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~ 174 (249)
...+-+.+..-.++......+++-|||||+.|..+.. ....-||+.++++|+...-.-+.-+. .+..++
T Consensus 68 REQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMa------TGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---- 137 (431)
T COG2895 68 REQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMA------TGASTADLAILLVDARKGVLEQTRRHSFIASLL---- 137 (431)
T ss_pred HhcCceEEEEeeecccccceEEEecCCcHHHHhhhhh------cccccccEEEEEEecchhhHHHhHHHHHHHHHh----
Confidence 1344455666667777788899999999999887776 77788999999999966321111110 122221
Q ss_pred CCCCcEEEEEecCCCCC--C----CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871 175 LASCPVLILGNKIDKHG--A----ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
.-..+++.+||+||++ + ....+...+...++ .....++|+||+.|.|+-
T Consensus 138 -GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~--------------~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 138 -GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLG--------------LKDVRFIPISALLGDNVV 192 (431)
T ss_pred -CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcC--------------CCcceEEechhccCCccc
Confidence 3356899999999987 1 12233444444433 445789999999999983
No 288
>KOG0463|consensus
Probab=99.43 E-value=3.6e-13 Score=106.33 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=131.4
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC----CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ----PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+.+++|||-..+|||||+.-|+.++... ...........+ .+++..-+|.+..|-...=+ ....|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEi----ESGRTSSVGNDILGFD~~GN-------vVNKP 201 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEI----ESGRTSSVGNDILGFDVHGN-------VVNKP 201 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhc----ccCccccccccceeeccccc-------cccCC
Confidence 6799999999999999999999877652 222233344444 55555555555544321100 01122
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+...--|....+++...+.++|.+|++.|-...- |-..-+..|.-++++.++... .. .-++.+......
T Consensus 202 D~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTv----FGMTGH~PDf~MLMiGaNaGI-iG----mTKEHLgLALaL 272 (641)
T KOG0463|consen 202 DPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTV----FGMTGHMPDFTMLMIGANAGI-IG----MTKEHLGLALAL 272 (641)
T ss_pred CCCCCcccceeeccccceeEEEEeccchhhhhheee----eccccCCCCceEEEecccccc-ee----ccHHhhhhhhhh
Confidence 334445557777788888899999999998865543 223346789999999887631 11 112222222226
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccC-------------CCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVAT-------------PRSEMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
..|+++|++|+|++.....++-...+..+....++... .......+-+|+|.+|..+|.|++-+...
T Consensus 273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 89999999999999876666655555554444444432 12333346689999999999999877655
Q ss_pred H
Q psy871 244 L 244 (249)
Q Consensus 244 l 244 (249)
|
T Consensus 353 L 353 (641)
T KOG0463|consen 353 L 353 (641)
T ss_pred H
Confidence 5
No 289
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.3e-12 Score=102.55 Aligned_cols=103 Identities=22% Similarity=0.197 Sum_probs=67.7
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|||.||+|||||+|+++..... +++.|+.++.+...++. + -+..+.... .
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d------------~----rl~~L~~~~------~ 59 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD------------C----RLDELAEIV------K 59 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc------------h----HHHHHHHhc------C
Confidence 368999999999999999999988754 88999999999884321 1 011111000 0
Q ss_pred cccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
... ......+.++|.+|.-. .++-...+-+|++.++.+|+++.|+|+.
T Consensus 60 --c~~-------k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 60 --CPP-------KIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred --CCC-------cEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 000 01223567888887443 3333445677888888888888888875
No 290
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.40 E-value=3.7e-11 Score=92.24 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=90.5
Q ss_pred hHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeee--eeeceEEEEcCCCC
Q psy871 5 WDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLW--TKSGKLLFLGLDNA 77 (249)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~g~~~~ 77 (249)
.+.+-+...-+|.. -..+.++|+|++|+||||+++++++..+.. ...|..+..-..... .....+.+.+....
T Consensus 8 ~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~ 87 (240)
T smart00053 8 VNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFT 87 (240)
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccC
Confidence 44444433355654 467799999999999999999999875321 111111111000000 01111212221112
Q ss_pred chhHHHHHHhc--CCcccccCCcccceeceecccccc-ceEEEEEeCCCchhh------hhhHHHHhh-hhcccc-ccce
Q psy871 78 GKTTLLHMLKD--DRLAQPVPTLHPTRRVWKDYFPAV-DAIVFLVDTSDRERF------EESKSELQC-LLTDES-LASS 146 (249)
Q Consensus 78 Gkssl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~------~~~~~~~~~-~~~~~~-~~d~ 146 (249)
..+.+...+.. ...... +...........+... -..+.++|+||.... ......... ...+++ ..++
T Consensus 88 ~~~~v~~~i~~~~~~~~~~--~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~I 165 (240)
T smart00053 88 DFDEVRNEIEAETDRVTGT--NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECL 165 (240)
T ss_pred CHHHHHHHHHHHHHHhcCC--CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCe
Confidence 22222222111 000000 1111111111111121 135889999997532 112222222 334555 4568
Q ss_pred EEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhh
Q psy871 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204 (249)
Q Consensus 147 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 204 (249)
+++|+|+.....-.+.....+.+ . ..+.|+++|+||+|..+.. .++.+.++.
T Consensus 166 IL~Vvda~~d~~~~d~l~ia~~l-d---~~~~rti~ViTK~D~~~~~--~~~~~~~~~ 217 (240)
T smart00053 166 ILAVTPANVDLANSDALKLAKEV-D---PQGERTIGVITKLDLMDEG--TDARDILEN 217 (240)
T ss_pred EEEEEECCCCCCchhHHHHHHHH-H---HcCCcEEEEEECCCCCCcc--HHHHHHHhC
Confidence 88899986633322222222222 2 2689999999999998642 225554443
No 291
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.40 E-value=7.2e-12 Score=101.54 Aligned_cols=178 Identities=17% Similarity=0.161 Sum_probs=110.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCC--CCCCC--CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDR--LAQPV--PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~--~~~~~--~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
++-++|+++-+...|||||+..|+... +.... ....-+...++ ...
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlE---kER--------------------------- 52 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLE---KER--------------------------- 52 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchh---hhc---------------------------
Confidence 445799999999999999999998543 22100 00011111110 000
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
|..-... ...+...+..+.++|||||..|-.-.+ +.++-.|.+++++|+.+..-.+.-. .++..+.
T Consensus 53 --GITILaK--nTav~~~~~~INIvDTPGHADFGGEVE------Rvl~MVDgvlLlVDA~EGpMPQTrF-VlkKAl~--- 118 (603)
T COG1217 53 --GITILAK--NTAVNYNGTRINIVDTPGHADFGGEVE------RVLSMVDGVLLLVDASEGPMPQTRF-VLKKALA--- 118 (603)
T ss_pred --CcEEEec--cceeecCCeEEEEecCCCcCCccchhh------hhhhhcceEEEEEEcccCCCCchhh-hHHHHHH---
Confidence 1111111 112223456799999999999988777 7778899999999999854443322 3333333
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHHHHHHH
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGDGFRWL 244 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l 244 (249)
.+.+.|+|+||+|...+...+-+.+.+..+... + ......++|++-.||+.|. ++..||+.+
T Consensus 119 -~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L-~------A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I 190 (603)
T COG1217 119 -LGLKPIVVINKIDRPDARPDEVVDEVFDLFVEL-G------ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETI 190 (603)
T ss_pred -cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh-C------CChhhCCCcEEEeeccCceeccCccccccchhHHHHHH
Confidence 678889999999998865544444444433210 0 1122245899999999864 567788888
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+++
T Consensus 191 ~~hv 194 (603)
T COG1217 191 LDHV 194 (603)
T ss_pred HHhC
Confidence 7765
No 292
>KOG1490|consensus
Probab=99.37 E-value=2.1e-12 Score=105.47 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=101.4
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
.....+.++|+|.||+|||||+|-++...+. ++++|.....+-
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH---------------------------------- 209 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH---------------------------------- 209 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh----------------------------------
Confidence 4466788999999999999999998765433 333333322222
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchh--hhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhH--HHHHH
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER--FEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESK--SELQC 168 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~--~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~--~~~~~ 168 (249)
+...-....+.||||.-. .+. +.-.+.....-.+...+++|++|.+..+++.-.. ..++.
T Consensus 210 ---------------~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhs 274 (620)
T KOG1490|consen 210 ---------------LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHS 274 (620)
T ss_pred ---------------hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHH
Confidence 111223467889998321 111 1122222233346678899999999987764322 23334
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 169 LLTDESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
+ .+.+.+.|.|+|+||+|+...... +++.+.+... ..++++++|..+.+|+.++....
T Consensus 275 I--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~----------------~~v~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 275 I--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD----------------GNVKVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred h--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc----------------cCceEEEecccchhceeeHHHHH
Confidence 3 444578999999999999763332 2333333322 23899999999999998876655
Q ss_pred hh
Q psy871 245 AN 246 (249)
Q Consensus 245 ~~ 246 (249)
++
T Consensus 337 Ce 338 (620)
T KOG1490|consen 337 CE 338 (620)
T ss_pred HH
Confidence 44
No 293
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.36 E-value=8.1e-12 Score=97.72 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=64.2
Q ss_pred EEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 24 LLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
|+++|.||||||||+|+|++.... ++.+|+.+..+.+.++ + .-...+. .+. .+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~----d--------~r~~~l~-~~~---------~~-- 56 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVP----D--------ERLDKLA-EIV---------KP-- 56 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEec----c--------chhhhHH-HHh---------CC--
Confidence 589999999999999999998764 4667777777666321 0 0000010 000 00
Q ss_pred ceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
.......+.++|+||...- .........++..++.+|++++|+|+.
T Consensus 57 --------~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 57 --------KKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred --------ceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 0112345889999996532 223345567888899999999999874
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.36 E-value=7.8e-12 Score=95.35 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=89.4
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
||+++|+.+|||||+.+.+.....+.-...++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~--------------------------------------------- 35 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI--------------------------------------------- 35 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG--------------------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC---------------------------------------------
Confidence 79999999999999999997653321111111111
Q ss_pred eceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh---HhhHHHHHHHHhccCCCCC
Q psy871 103 RVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF---EESKSELQCLLTDESLASC 178 (249)
Q Consensus 103 ~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~ 178 (249)
..-...+. .....+.+||.||+..+....- ....-...+.+.++|+|+|+.+.+-. ..+...+..+.+ ..+++
T Consensus 36 ~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~-~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~--~sp~~ 112 (232)
T PF04670_consen 36 DVEKSHVRFLSFLPLNIWDCPGQDDFMENYF-NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ--YSPNI 112 (232)
T ss_dssp SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH-TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHH--HSTT-
T ss_pred CceEEEEecCCCcEEEEEEcCCccccccccc-cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHH--hCCCC
Confidence 11111111 2344799999999886654410 00111345789999999999954322 223333333322 23789
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+.+++.|+|+..+..+++..+... .+..... ......+.++.+|... +.+-+.+..+.+.
T Consensus 113 ~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~-------~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 113 KVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE-------DLGIEDITFFLTSIWD-ESLYEAWSKIVQK 174 (232)
T ss_dssp EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH-------HTT-TSEEEEEE-TTS-THHHHHHHHHHHT
T ss_pred eEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh-------hccccceEEEeccCcC-cHHHHHHHHHHHH
Confidence 9999999999986433333222111 1110000 0111247889998887 5777777766654
No 295
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6.2e-12 Score=96.34 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=108.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+++.+|+.+|+.+.|||||.-+++..-.... ......++.. +..++ -..
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~------------------~~~~~~y~~i-----------d~aPe-Ek~ 58 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG------------------GAEAKAYDQI-----------DNAPE-EKA 58 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhc------------------cccccchhhh-----------ccCch-Hhh
Confidence 46788999999999999999999975221100 0000000000 00000 002
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.+.+.+..+..|+..+..+-.+|+||+..|-.+.- ......|..|+|+.+++..-.+..+..+. ....+
T Consensus 59 rGITIntahveyet~~rhyahVDcPGHaDYvKNMI------tgAaqmDgAILVVsA~dGpmPqTrEHiLl-----arqvG 127 (394)
T COG0050 59 RGITINTAHVEYETANRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVAATDGPMPQTREHILL-----ARQVG 127 (394)
T ss_pred cCceeccceeEEecCCceEEeccCCChHHHHHHHh------hhHHhcCccEEEEEcCCCCCCcchhhhhh-----hhhcC
Confidence 22334444556677788899999999988866555 66678999999999998543333221111 11256
Q ss_pred Cc-EEEEEecCCCCCCCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc-cc-------hHHHHHH
Q psy871 178 CP-VLILGNKIDKHGAAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR-QG-------YGDGFRW 243 (249)
Q Consensus 178 ~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~g-------v~~l~~~ 243 (249)
.| +++++||+|++++.. ..++++++.... +.....|++.-||+.. +| +.+|++.
T Consensus 128 vp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~------------f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~a 195 (394)
T COG0050 128 VPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG------------FPGDDTPIIRGSALKALEGDAKWEAKIEELMDA 195 (394)
T ss_pred CcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC------------CCCCCcceeechhhhhhcCCcchHHHHHHHHHH
Confidence 65 678899999998422 234556666555 5556789999998753 32 3556665
Q ss_pred Hhhhc
Q psy871 244 LANYI 248 (249)
Q Consensus 244 l~~~i 248 (249)
+.++|
T Consensus 196 vd~yi 200 (394)
T COG0050 196 VDSYI 200 (394)
T ss_pred HHhcC
Confidence 55544
No 296
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.35 E-value=4.8e-12 Score=91.74 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=57.1
Q ss_pred ccc-eEEEEEECCChhhhHhhHHHHHHHHh-ccCCCCCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCC
Q psy871 143 LAS-SIVFLVDTSDRERFEESKSELQCLLT-DESLASCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSE 218 (249)
Q Consensus 143 ~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
..+ .-++|+|++..+..-. + .+.... .-++|+||.|+.... +.+...+..+..+
T Consensus 116 L~d~~~v~VidvteGe~~P~---------K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~n------------ 173 (202)
T COG0378 116 LGDHLRVVVIDVTEGEDIPR---------KGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVN------------ 173 (202)
T ss_pred hhhceEEEEEECCCCCCCcc---------cCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhC------------
Confidence 344 7799999988532110 0 111122 568999999998743 3466777677665
Q ss_pred CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 219 MSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+..+++++|+++|+|++++++|+...
T Consensus 174 ---p~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 174 ---PEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred ---CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 56899999999999999999999765
No 297
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.33 E-value=1.9e-11 Score=108.67 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=50.2
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
+..+..+.++||||+..|..... ..+..+|++++|+|+.+....+.. ..+.... . .++|+++++||+|.
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~------~al~~aD~~llVvda~~g~~~~t~-~~~~~~~-~---~~~p~ivviNKiD~ 150 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVT------RAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL-K---ENVKPVLFINKVDR 150 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHH------HHHHhcCEEEEEEecCCCCCccHH-HHHHHHH-H---cCCCEEEEEEChhc
Confidence 44567899999999988765444 667889999999999874322221 1222222 2 56888999999998
Q ss_pred CC
Q psy871 190 HG 191 (249)
Q Consensus 190 ~~ 191 (249)
..
T Consensus 151 ~~ 152 (720)
T TIGR00490 151 LI 152 (720)
T ss_pred cc
Confidence 64
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.32 E-value=4.5e-11 Score=106.56 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=48.9
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.++||||+..|..... ..+..+|++++|+|+...-..+. ...+..... .+.|.++++||+|+..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~------~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVT------RAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CcEEEEEEcCCCccChHHHHH------HHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----cCCCeEEEEECchhhc
Confidence 466789999999988765444 66788999999999987533222 223333222 4578899999999863
No 299
>KOG0461|consensus
Probab=99.31 E-value=4.6e-11 Score=93.60 Aligned_cols=118 Identities=12% Similarity=0.060 Sum_probs=72.8
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
...+.++|+||+...-... +......|..++|+|+.....-+..+- .+-++ .....++|+||+|...
T Consensus 69 ~lq~tlvDCPGHasLIRti------iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 69 QLQFTLVDCPGHASLIRTI------IGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLP 136 (522)
T ss_pred cceeEEEeCCCcHHHHHHH------HhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEecccccc
Confidence 3568899999987543322 245566789999999987544443321 12222 3456788888888765
Q ss_pred CCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc----cchHHHHHHHhhhc
Q psy871 192 AAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR----QGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----~gv~~l~~~l~~~i 248 (249)
+.. ...++...+......+.- -...+.|++++||+.| +++.++.+.|.+++
T Consensus 137 E~qr~ski~k~~kk~~KtLe~t------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 137 ENQRASKIEKSAKKVRKTLEST------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred chhhhhHHHHHHHHHHHHHHhc------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 322 333444444433221111 1113489999999999 88888888887654
No 300
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.29 E-value=3.5e-11 Score=95.45 Aligned_cols=209 Identities=19% Similarity=0.133 Sum_probs=116.1
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCCCC--CCC--CCcccceeeee-eeeceEEEEcCCCCchhHHHHHHhc
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPT--LHPILGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKD 88 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t--~~~~~~~~~~~-~~~~~~~~~g~~~~Gkssl~~~l~~ 88 (249)
+..-+..+..+++.|+.++|||||+..|+.+..... .+. +......+..- +.+-...+.|.+..+.-.+.+-+.
T Consensus 110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld- 188 (527)
T COG5258 110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD- 188 (527)
T ss_pred cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc-
Confidence 344567788999999999999999999987654410 000 11111111000 012233344444421111100000
Q ss_pred CCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871 89 DRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC 168 (249)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 168 (249)
. .-....+...|..+.++|+.|++.|-...- ..++. ...|..++++.+++..+.-. ++.+--
T Consensus 189 --------~-----aE~~~vv~~aDklVsfVDtvGHEpwLrTti--rGL~g--qk~dYglLvVaAddG~~~~t-kEHLgi 250 (527)
T COG5258 189 --------E-----AEKAAVVKRADKLVSFVDTVGHEPWLRTTI--RGLLG--QKVDYGLLVVAADDGVTKMT-KEHLGI 250 (527)
T ss_pred --------H-----HHHhHhhhhcccEEEEEecCCccHHHHHHH--HHHhc--cccceEEEEEEccCCcchhh-hHhhhh
Confidence 0 000112356678899999999998754332 22222 46899999999988533221 112222
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCC----HHHHHHHhhhcccccCccc------CC--CCCCCCCceeEEEeeeccccc
Q psy871 169 LLTDESLASCPVLILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVA------TP--RSEMSGRPIELFMCSVLMRQG 236 (249)
Q Consensus 169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~Sa~~g~g 236 (249)
.+ ....|++++++|+|+..+.. .+++...++..+...-... .. +-+.+..-+|+|.+|+.+|+|
T Consensus 251 ~~----a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~G 326 (527)
T COG5258 251 AL----AMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEG 326 (527)
T ss_pred hh----hhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCcc
Confidence 22 26899999999999987433 3455555655432211000 01 111222358999999999999
Q ss_pred hHHHHHHHh
Q psy871 237 YGDGFRWLA 245 (249)
Q Consensus 237 v~~l~~~l~ 245 (249)
++-|.+.+.
T Consensus 327 ldlL~e~f~ 335 (527)
T COG5258 327 LDLLDEFFL 335 (527)
T ss_pred HHHHHHHHH
Confidence 987766554
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=7.1e-12 Score=92.09 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=43.4
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 187 (249)
..+.++||||......... .....+++.+|++++|.++++..+-.... .+.+.... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~--~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT--EITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS--HHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhH--HHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 3589999999765333322 12225558899999999999965555443 33333332 445599999985
No 302
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.28 E-value=2e-11 Score=110.04 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=51.3
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
.+..+.++||||+..|..... ..+..+|+.++|+|+...-..+.. ..+..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~------~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVT------AALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHH------HHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECCccc
Confidence 356788999999998876665 667889999999999875433322 23333322 689999999999987
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=99.26 E-value=3.7e-11 Score=108.22 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=49.8
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
+..+.++||||+..|..... ..+..+|++++|+|+.+.-..+.. ..+..... .++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~------~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHH------HHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 45689999999988765544 667889999999999885433322 23333322 578999999999997
No 304
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.25 E-value=1.4e-10 Score=89.96 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
..+.+|+|+|.+|||||||+|+|++...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5568999999999999999999988654
No 305
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1e-10 Score=94.63 Aligned_cols=159 Identities=16% Similarity=0.058 Sum_probs=102.8
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~ 102 (249)
-|+..|+...|||||+.++++....... ... ..+.+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~-----Eek--------------------------------------KRG~Ti 38 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLP-----EEK--------------------------------------KRGITI 38 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccch-----hhh--------------------------------------hcCceE
Confidence 4788899999999999999765432100 000 111222
Q ss_pred eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EE
Q psy871 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VL 181 (249)
Q Consensus 103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i 181 (249)
+..-.+.+..+..+.++|.||++++-+..- ..+...|..++|+|+++.-..+..+ ...++.. .+++ .+
T Consensus 39 Dlg~~y~~~~d~~~~fIDvpgh~~~i~~mi------ag~~~~d~alLvV~~deGl~~qtgE--hL~iLdl---lgi~~gi 107 (447)
T COG3276 39 DLGFYYRKLEDGVMGFIDVPGHPDFISNLL------AGLGGIDYALLVVAADEGLMAQTGE--HLLILDL---LGIKNGI 107 (447)
T ss_pred eeeeEeccCCCCceEEeeCCCcHHHHHHHH------hhhcCCceEEEEEeCccCcchhhHH--HHHHHHh---cCCCceE
Confidence 222233445566899999999998766555 6678899999999997644333321 1122222 4444 59
Q ss_pred EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+||+|..+.. ++.+..+.+... ......++|.+|+++|+|+++|.+.|.+..
T Consensus 108 ivltk~D~~d~~---r~e~~i~~Il~~----------l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 108 IVLTKADRVDEA---RIEQKIKQILAD----------LSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred EEEeccccccHH---HHHHHHHHHHhh----------cccccccccccccccCCCHHHHHHHHHHhh
Confidence 999999998743 333333332211 112347889999999999999999998764
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.25 E-value=3.3e-11 Score=93.59 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=69.5
Q ss_pred hhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHH-HHHHHh
Q psy871 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEE-EIRQYF 202 (249)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~ 202 (249)
+++..+.+ .+++.+|.+++|+|++++. ++..+..|+.... . .++|+++|+||+||.++.... +..+.+
T Consensus 24 eR~~~L~r------~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~ 93 (245)
T TIGR00157 24 ERKNELTR------PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-A---QNIEPIIVLNKIDLLDDEDMEKEQLDIY 93 (245)
T ss_pred cccceEEC------cccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECcccCCCHHHHHHHHHHH
Confidence 34455555 4678899999999999877 7887877776442 2 679999999999997532211 222222
Q ss_pred hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+..+ .+++++||++|.|++++++.+.+.
T Consensus 94 ~~~g-----------------~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 94 RNIG-----------------YQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred HHCC-----------------CeEEEEecCCchhHHHHHhhhcCC
Confidence 2222 689999999999999999988653
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=5e-10 Score=90.71 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=22.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...|+|+|+.++|||||+|++++.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhh
Confidence 458999999999999999999986
No 308
>KOG1143|consensus
Probab=99.22 E-value=5.5e-11 Score=94.10 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=111.3
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCC----CCCCcccceeeeeeeeceEE-----EEcCCCCchhHHHHHHhcCCc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPV----PTLHPILGYLGLWTKSGKLL-----FLGLDNAGKTTLLHMLKDDRL 91 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~-----~~g~~~~Gkssl~~~l~~~~~ 91 (249)
+.+++++|-..+|||||+.-|+.++..... -.+......+ .+++.. +.|.++.|+--.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEi----qsGrTSsis~evlGFd~~g~vVN--------- 233 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEI----QSGRTSSISNEVLGFDNRGKVVN--------- 233 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhh----ccCcccccchhcccccccccccc---------
Confidence 679999999999999999999987655211 1111111112 111111 112222222110
Q ss_pred ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
+ ..........+.....+.++|.+|+.+|....- +-+. -...|+.++|+.+.....+..- +.+--+..
T Consensus 234 ---Y----~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi---~gLt-gY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A 301 (591)
T KOG1143|consen 234 ---Y----AQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTI---HGLT-GYTPHFACLVVSADRGITWTTR-EHLGLIAA 301 (591)
T ss_pred ---h----hhcccHHHHHhhhcceEEEeecccchhhheeee---eecc-cCCCceEEEEEEcCCCCccccH-HHHHHHHH
Confidence 0 000011223445566799999999988765543 1111 1347899999999886554322 23333322
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccC-c-------ccCCCC-CCCCCceeEEEeeeccccchH
Q psy871 172 DESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTG-K-------VATPRS-EMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~-~-------~~~~~~-~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
.++|++++++|+|+++.... +++.+.+...+...- + +..... ....+-.|+|.+|+.+|+|++
T Consensus 302 ----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ 377 (591)
T KOG1143|consen 302 ----LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR 377 (591)
T ss_pred ----hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence 68999999999999885333 445555544432211 0 001111 122345799999999999998
Q ss_pred HHHHHH
Q psy871 239 DGFRWL 244 (249)
Q Consensus 239 ~l~~~l 244 (249)
-+...|
T Consensus 378 ll~~fL 383 (591)
T KOG1143|consen 378 LLRTFL 383 (591)
T ss_pred HHHHHH
Confidence 776554
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6.4e-11 Score=103.34 Aligned_cols=140 Identities=18% Similarity=0.159 Sum_probs=86.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..+-++|+|+||.++|||||..+|+...-. +.-.|..-.|.+.+-..-....+ |
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~---------------------i~k~G~v~~g~~~~D~~e~EqeR-----G 60 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGI---------------------ISKIGEVHDGAATMDWMEQEQER-----G 60 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCC---------------------cCCCccccCCCccCCCcHHHHhc-----C
Confidence 567789999999999999999999742211 11122222222211111111111 1
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..-.......+..+ +..+.++|||||-.|..-.+ +.+..+|+.+.|+|+...-..+.-. .|++. ...+
T Consensus 61 ITI~saa~s~~~~~-~~~iNlIDTPGHVDFt~EV~------rslrvlDgavvVvdaveGV~~QTEt-v~rqa----~~~~ 128 (697)
T COG0480 61 ITITSAATTLFWKG-DYRINLIDTPGHVDFTIEVE------RSLRVLDGAVVVVDAVEGVEPQTET-VWRQA----DKYG 128 (697)
T ss_pred CEEeeeeeEEEEcC-ceEEEEeCCCCccccHHHHH------HHHHhhcceEEEEECCCCeeecHHH-HHHHH----hhcC
Confidence 11111111111121 57899999999999988777 7788999999999998853333221 23333 2378
Q ss_pred CcEEEEEecCCCCCCCCH
Q psy871 178 CPVLILGNKIDKHGAASE 195 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~ 195 (249)
.|.++++||+|.......
T Consensus 129 vp~i~fiNKmDR~~a~~~ 146 (697)
T COG0480 129 VPRILFVNKMDRLGADFY 146 (697)
T ss_pred CCeEEEEECccccccChh
Confidence 999999999999774333
No 310
>KOG0410|consensus
Probab=99.21 E-value=5.2e-11 Score=92.54 Aligned_cols=155 Identities=25% Similarity=0.251 Sum_probs=95.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
.+.+.|+|||..|+|||||+++|++.... .-+.|.+++....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a----------------------------------- 220 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSA----------------------------------- 220 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhc-----------------------------------
Confidence 34569999999999999999999854433 1112222221111
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
.++ ....+.+.||-|+.+- ..+...+..++.....+|.++.|.|+++|.--..... ....++..
T Consensus 221 ------------~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i 286 (410)
T KOG0410|consen 221 ------------HLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQI 286 (410)
T ss_pred ------------cCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhc
Confidence 112 1235677888885432 3344556777888899999999999999865544332 22333333
Q ss_pred CCCCCc----EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 174 SLASCP----VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 174 ~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.....| ++=|-||+|........ .. --.+.+||++|.|++++.+.+...
T Consensus 287 gv~~~pkl~~mieVdnkiD~e~~~~e~----------------------E~---n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 287 GVPSEPKLQNMIEVDNKIDYEEDEVEE----------------------EK---NLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred CCCcHHHHhHHHhhccccccccccCcc----------------------cc---CCccccccccCccHHHHHHHHHHH
Confidence 323333 34456677765431111 00 126789999999999999887654
No 311
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.20 E-value=5.5e-10 Score=88.11 Aligned_cols=124 Identities=10% Similarity=0.088 Sum_probs=69.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+..+|+++|.+|+||||++|+|++.+...............
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~-------------------------------------- 77 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM-------------------------------------- 77 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--------------------------------------
Confidence 467899999999999999999999876542111111000000
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHH----HhhhhccccccceEEEEEECCC--hhhh-HhhHHHHHHHHh
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE----LQCLLTDESLASSIVFLVDTSD--RERF-EESKSELQCLLT 171 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~----~~~~~~~~~~~d~ii~v~d~~~--~~~~-~~~~~~~~~~~~ 171 (249)
..... .....+.++||||........+. .++++.. ...|++++|...+. .... ..+.+.+.....
T Consensus 78 -----~~~~~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG 149 (313)
T TIGR00991 78 -----MVSRT--RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG 149 (313)
T ss_pred -----EEEEE--ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh
Confidence 00000 12346899999997754332221 2222221 36899999965443 2212 222223333322
Q ss_pred ccCCCCCcEEEEEecCCCC
Q psy871 172 DESLASCPVLILGNKIDKH 190 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~ 190 (249)
.. --.+.++++|++|..
T Consensus 150 ~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 150 KD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred hh--hhccEEEEEECCccC
Confidence 11 236799999999976
No 312
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.17 E-value=1e-09 Score=83.67 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=68.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
.+|+|+|..||||||+.|.+++............. +
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~--------------------------------------------t 36 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSV--------------------------------------------T 36 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS----------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCc--------------------------------------------c
Confidence 37999999999999999999886643211100000 0
Q ss_pred eeceeccccccceEEEEEeCCCchhhh----hhHH-HHhhhhccccccceEEEEEECCChhh-hHhhHHHHHHHHhccCC
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFE----ESKS-ELQCLLTDESLASSIVFLVDTSDRER-FEESKSELQCLLTDESL 175 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~----~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~ 175 (249)
...........+..+.++||||..... .... ...++.......|++++|+...+... -....+.+..+....
T Consensus 37 ~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-- 114 (212)
T PF04548_consen 37 QECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-- 114 (212)
T ss_dssp SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--
T ss_pred cccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--
Confidence 000001112234678999999954321 1122 22223334577999999999984321 122223444443321
Q ss_pred CCCcEEEEEecCCCCCCCC
Q psy871 176 ASCPVLILGNKIDKHGAAS 194 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~ 194 (249)
.-..++||.|.+|...+..
T Consensus 115 ~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 115 IWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp GGGGEEEEEEEGGGGTTTT
T ss_pred HHhHhhHHhhhcccccccc
Confidence 1256899999999877544
No 313
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5e-10 Score=90.44 Aligned_cols=141 Identities=22% Similarity=0.262 Sum_probs=88.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhc--CCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD--DRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+.+..+|+-+|.+|||||...|+- +-+.......+. +....-+|.-+..-. ..
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~r-----------------k~~~~a~SDWM~iEk-------qR 65 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGR-----------------KSGKHAKSDWMEIEK-------QR 65 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeec-----------------cCCcccccHHHHHHH-------hc
Confidence 3567899999999999999999863 222221111111 111111222222111 11
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
|+..+... ..++..++.+.+.|||||+.|.+-.- +.+..+|+.+.|+|+...--.+.. .+.+.. ...
T Consensus 66 GISVtsSV--MqF~Y~~~~iNLLDTPGHeDFSEDTY------RtLtAvDsAvMVIDaAKGiE~qT~--KLfeVc---rlR 132 (528)
T COG4108 66 GISVTSSV--MQFDYADCLVNLLDTPGHEDFSEDTY------RTLTAVDSAVMVIDAAKGIEPQTL--KLFEVC---RLR 132 (528)
T ss_pred CceEEeeE--EEeccCCeEEeccCCCCccccchhHH------HHHHhhheeeEEEecccCccHHHH--HHHHHH---hhc
Confidence 44444444 33455688899999999999987766 667789999999999874333332 233333 338
Q ss_pred CCcEEEEEecCCCCCCCCHH
Q psy871 177 SCPVLILGNKIDKHGAASEE 196 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~ 196 (249)
++|++-.+||.|.....+.+
T Consensus 133 ~iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 133 DIPIFTFINKLDREGRDPLE 152 (528)
T ss_pred CCceEEEeeccccccCChHH
Confidence 99999999999987654443
No 314
>KOG1486|consensus
Probab=99.16 E-value=1.5e-09 Score=81.64 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=112.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC---CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR---LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
-..+|+++|.|.+|||||+..++... ..+.++|....++.+.+ ...++++...|+. -.- ...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y--~ga~IQllDLPGI--ieG-----------Asq 125 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY--NGANIQLLDLPGI--IEG-----------ASQ 125 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe--cCceEEEecCccc--ccc-----------ccc
Confidence 35699999999999999999999643 44778899999998854 3445555544432 211 111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHH-HH----------------------------------------h
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-EL----------------------------------------Q 135 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~----------------------------------------~ 135 (249)
+.++.+... ..-+..|..+.+.|..-.+.-.+..+ .+ .
T Consensus 126 gkGRGRQvi-avArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~ 204 (364)
T KOG1486|consen 126 GKGRGRQVI-AVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIY 204 (364)
T ss_pred CCCCCceEE-EEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHH
Confidence 333333332 22345566777777765443332222 11 2
Q ss_pred hhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCC
Q psy871 136 CLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP 215 (249)
Q Consensus 136 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
..+..|+.-++-+++-+....+.|-+. . ..+...++++.|.||+|.+ +.+++.+..+..+
T Consensus 205 ~ILheykI~Naevl~ReD~t~DdfIDv-------i-~gnr~Y~~ClYvYnKID~v---s~eevdrlAr~Pn--------- 264 (364)
T KOG1486|consen 205 TILHEYKIHNAEVLFREDCTVDDFIDV-------I-EGNRVYIKCLYVYNKIDQV---SIEEVDRLARQPN--------- 264 (364)
T ss_pred HHHHHHeeccceEEEecCCChHHHHHH-------H-hccceEEEEEEEeecccee---cHHHHHHHhcCCC---------
Confidence 223334445555555544444434332 1 1122468999999999976 5678887777654
Q ss_pred CCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 216 RSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
-+-+|.....|++.+++.+.+.+
T Consensus 265 ----------svViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 265 ----------SVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ----------cEEEEeccccCHHHHHHHHHHHh
Confidence 34466677789999999988765
No 315
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.14 E-value=4.6e-10 Score=90.85 Aligned_cols=171 Identities=13% Similarity=0.046 Sum_probs=75.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+.+|+|+|.+|+|||||+|+|.+-... ...+|-. .
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-----~------------------------------------ 71 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-----V------------------------------------ 71 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-----H------------------------------------
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-----C------------------------------------
Confidence 45779999999999999999999763221 1111110 0
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
+.+........+.. -.+.+||.||.....-....+..- ......|.++++.+-.-.. .++ ++..-+.. .
T Consensus 72 --etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~-~~~~~yD~fiii~s~rf~~--ndv--~La~~i~~---~ 140 (376)
T PF05049_consen 72 --ETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKE-VKFYRYDFFIIISSERFTE--NDV--QLAKEIQR---M 140 (376)
T ss_dssp --SCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHH-TTGGG-SEEEEEESSS--H--HHH--HHHHHHHH---T
T ss_pred --cCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHH-ccccccCEEEEEeCCCCch--hhH--HHHHHHHH---c
Confidence 00000000001111 138899999975432222211111 1356678777765432221 111 33332233 6
Q ss_pred CCcEEEEEecCCC---------CCCCCHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeecc--ccchHHHHHHH
Q psy871 177 SCPVLILGNKIDK---------HGAASEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLM--RQGYGDGFRWL 244 (249)
Q Consensus 177 ~~p~ivv~nK~Dl---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--g~gv~~l~~~l 244 (249)
++|+.+|-||+|. .....++++.+.++. +... .........++|-+|+.. .+.+..|.+.|
T Consensus 141 gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~-------L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL 213 (376)
T PF05049_consen 141 GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN-------LQKAGVSEPQVFLVSSFDLSKYDFPKLEETL 213 (376)
T ss_dssp T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH-------HHCTT-SS--EEEB-TTTTTSTTHHHHHHHH
T ss_pred CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH-------HHHcCCCcCceEEEeCCCcccCChHHHHHHH
Confidence 8999999999995 112222222222111 1100 001223446799999975 45677777777
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+.|
T Consensus 214 ~~dL 217 (376)
T PF05049_consen 214 EKDL 217 (376)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6543
No 316
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.13 E-value=2.4e-10 Score=92.15 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=86.4
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh----------hhhHhhHHHHHHHHhccCCCCCcE
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR----------ERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+..+.+||++|+......+. .++..++++++|+|.++. ..+.+....+..++......++|+
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~------~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi 231 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWI------HCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI 231 (317)
T ss_pred ecceEEEEECCCCCcccchhHH------HHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence 3455688999999877666665 667789999999999874 456666667778877766778999
Q ss_pred EEEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 181 LILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 181 ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
++++||.|+.. ....+++..++....... .....+.+.++.++|..-.++..+|+
T Consensus 232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~-------~~~~~~~~~~~~t~a~Dt~~i~~vf~ 304 (317)
T cd00066 232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDL-------NRNPNKEIYPHFTCATDTENIRFVFD 304 (317)
T ss_pred EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHh-------hcCCCCeEEEEeccccchHHHHHHHH
Confidence 99999999643 112233333332211000 00123557788899999999999998
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
.+.+.|
T Consensus 305 ~v~~~i 310 (317)
T cd00066 305 AVKDII 310 (317)
T ss_pred HHHHHH
Confidence 877643
No 317
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.12 E-value=3.1e-10 Score=92.27 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=86.2
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh----------hhhHhhHHHHHHHHhccCCCCCcE
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR----------ERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
..+..+.+||.+|+......+. .++..++++++|+|.++. ..+.+....+..++......++|+
T Consensus 181 ~~~~~~~~~DvgGqr~~R~kW~------~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi 254 (342)
T smart00275 181 VKKLFFRMFDVGGQRSERKKWI------HCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI 254 (342)
T ss_pred ECCeEEEEEecCCchhhhhhHH------HHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence 3445578999999876666665 567889999999999973 356666667788887777788999
Q ss_pred EEEEecCCCCCC-----------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871 181 LILGNKIDKHGA-----------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 181 ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
++++||.|+..+ ...+++..++........ . ....+.+..+.++|..-.++..+++.
T Consensus 255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~-----~-~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLN-----R-NSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhc-----c-CCCCceEEEEEeeecccHHHHHHHHH
Confidence 999999997531 122333333332211000 0 00224577889999999999999887
Q ss_pred Hhhhc
Q psy871 244 LANYI 248 (249)
Q Consensus 244 l~~~i 248 (249)
+.+.|
T Consensus 329 v~~~I 333 (342)
T smart00275 329 VKDII 333 (342)
T ss_pred HHHHH
Confidence 76543
No 318
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.09 E-value=3.5e-10 Score=82.08 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=56.4
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
+.+|++++|+|++++...... .+..++.. .++|+++|+||+|+.+....+++....+.
T Consensus 11 ~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~----------------- 68 (156)
T cd01859 11 KESDVVLEVLDARDPELTRSR--KLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKES----------------- 68 (156)
T ss_pred hhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHHh-----------------
Confidence 459999999999876443321 23333222 46899999999999643111111111111
Q ss_pred CceeEEEeeeccccchHHHHHHHhhhc
Q psy871 222 RPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+++++||+++.|++++++.+.+.+
T Consensus 69 ~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 125789999999999999999998653
No 319
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.01 E-value=2.2e-09 Score=84.78 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA 47 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~ 47 (249)
.++|+|+|.+|+|||||+|.|.+....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccc
Confidence 568999999999999999999886544
No 320
>KOG2486|consensus
Probab=99.00 E-value=4.4e-10 Score=85.70 Aligned_cols=167 Identities=21% Similarity=0.187 Sum_probs=90.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.+.++++|.+|+|||+|+|.++..... ...+.+..|++
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~----------------------~~t~k~K~g~T------------------ 173 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI----------------------ADTSKSKNGKT------------------ 173 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh----------------------hhhcCCCCccc------------------
Confidence 55689999999999999999998542211 11111122222
Q ss_pred ccceeceeccccccceEEEEEeCCCchh----hhhhHHH---HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRER----FEESKSE---LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~----~~~~~~~---~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
+.+ .++ .......++|.||..+ ++.-.++ -..++...+.--.+.+++|++-+. +..+....+++.
T Consensus 174 ---q~i--n~f-~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~g 245 (320)
T KOG2486|consen 174 ---QAI--NHF-HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLG 245 (320)
T ss_pred ---eee--eee-eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHh
Confidence 111 111 2344688899999221 1111111 122333333444556677776642 222224444544
Q ss_pred ccCCCCCcEEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871 172 DESLASCPVLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
+ .+.|+.+|+||||...... ...+...++.+. .+......|++.+|+.++.|.++++-.+.
T Consensus 246 e---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~----------~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 246 E---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI----------RGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred h---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc----------ccceeccCCceeeecccccCceeeeeehh
Confidence 4 7899999999999865321 011111111110 11222346788899999999999876655
Q ss_pred h
Q psy871 246 N 246 (249)
Q Consensus 246 ~ 246 (249)
+
T Consensus 313 q 313 (320)
T KOG2486|consen 313 Q 313 (320)
T ss_pred h
Confidence 4
No 321
>PRK12289 GTPase RsgA; Reviewed
Probab=98.99 E-value=2.2e-09 Score=87.29 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=61.1
Q ss_pred cccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCC
Q psy871 140 DESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSE 218 (249)
Q Consensus 140 ~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
.+..+|.+++|+|+.++. ....+..++... . ..++|+++|+||+||......+.+...+..++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g------------ 149 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTEQQQWQDRLQQWG------------ 149 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHHHHHHHHHHHhcC------------
Confidence 367899999999998765 333344444433 1 26899999999999975322223333333333
Q ss_pred CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 219 MSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+++++||+++.|++++++.|...
T Consensus 150 -----~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 150 -----YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred -----CeEEEEEcCCCCCHHHHhhhhccc
Confidence 678999999999999999988653
No 322
>KOG1534|consensus
Probab=98.99 E-value=2.7e-10 Score=83.32 Aligned_cols=88 Identities=13% Similarity=0.251 Sum_probs=58.6
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccc---cceEEEEEECCC---hhhh-HhhHHHHHHHHhccCCCCCcEEEEEe
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESL---ASSIVFLVDTSD---RERF-EESKSELQCLLTDESLASCPVLILGN 185 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~---~d~ii~v~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~n 185 (249)
+..++++|+||+.+.-.-...+++++.++.. .-++++++|+.= ...| .....-+..+.. ..+|.|-|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 4568999999988766655556666555544 567778888743 2222 212222222222 5799999999
Q ss_pred cCCCCCCCCHHHHHHHhhh
Q psy871 186 KIDKHGAASEEEIRQYFGL 204 (249)
Q Consensus 186 K~Dl~~~~~~~~~~~~~~~ 204 (249)
|+||....++++++.++.-
T Consensus 173 KMDLlk~~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNP 191 (273)
T ss_pred HHHHhhhhhHHHHHHhcCC
Confidence 9999988777888877753
No 323
>KOG1491|consensus
Probab=98.98 E-value=8.4e-10 Score=86.43 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=74.1
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA 92 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~ 92 (249)
|=...++++++||.||+|||||+|+|+..... .++.|+++....+.++ ...+ .-+...+
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~----d~Rf--------d~l~~~Y------ 76 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVP----DSRF--------DLLCPIY------ 76 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecC----chHH--------HHHHHhc------
Confidence 33456779999999999999999999998765 6778888887776321 1111 0000000
Q ss_pred cccCCcccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCC
Q psy871 93 QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSD 155 (249)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~ 155 (249)
+. -......+.++|.+|.-.-. +-...+-+|++.++.+|+++.|+++..
T Consensus 77 ----~~----------~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 77 ----GP----------KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ----CC----------cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 00 01234568899999965433 334466789999999999999998854
No 324
>KOG0460|consensus
Probab=98.97 E-value=3.3e-09 Score=83.20 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=99.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++.+|+-+|+...|||||.-+++.-........ ......+ |.+ ++ ....
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~-~~kydeI--------------D~A--------------PE-EkaR 101 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAK-FKKYDEI--------------DKA--------------PE-EKAR 101 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccc-cccHhhh--------------hcC--------------hh-hhhc
Confidence 6778999999999999999999975322100000 0000000 000 00 0022
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+.+.+..+..|+.....+--.|+||+..|-++.- .....-|..|+|+.+++..-.+.-+ .+.- .++. .-.
T Consensus 102 GITIn~aHveYeTa~RhYaH~DCPGHADYIKNMI------tGaaqMDGaILVVaatDG~MPQTrE-HlLL-ArQV--GV~ 171 (449)
T KOG0460|consen 102 GITINAAHVEYETAKRHYAHTDCPGHADYIKNMI------TGAAQMDGAILVVAATDGPMPQTRE-HLLL-ARQV--GVK 171 (449)
T ss_pred cceEeeeeeeeeccccccccCCCCchHHHHHHhh------cCccccCceEEEEEcCCCCCcchHH-HHHH-HHHc--CCc
Confidence 3344444455666667788899999988876655 6778899999999999954443322 1111 1121 224
Q ss_pred cEEEEEecCCCCCC-CCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc
Q psy871 179 PVLILGNKIDKHGA-ASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM 233 (249)
Q Consensus 179 p~ivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (249)
.+++.+||.|++++ ... -++++.+..+. +.....|++.-||+.
T Consensus 172 ~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g------------f~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 172 HIVVFINKVDLVDDPEMLELVEMEIRELLSEFG------------FDGDNTPVIRGSALC 219 (449)
T ss_pred eEEEEEecccccCCHHHHHHHHHHHHHHHHHcC------------CCCCCCCeeecchhh
Confidence 57889999999953 222 24555555555 666778999988874
No 325
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.3e-09 Score=76.39 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=60.5
Q ss_pred ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCC
Q psy871 139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSE 218 (249)
Q Consensus 139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
+.++.+|++++|+|+.++..... ..+.+.+... ..++|+++|+||+|+..+ ++...++..+..
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~-~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~----------- 66 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKE-KPHKHLIFVLNKCDLVPT---WVTARWVKILSK----------- 66 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhc-cCCCCEEEEEEchhcCCH---HHHHHHHHHHhc-----------
Confidence 45678999999999998643221 1333343321 246899999999999643 334444444331
Q ss_pred CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 219 MSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
. ....++++||+++.|++++++.+.+.
T Consensus 67 -~-~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 67 -E-YPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred -C-CcEEEEEeeccccccHHHHHHHHHHH
Confidence 1 11336899999999999999998765
No 326
>KOG0466|consensus
Probab=98.93 E-value=1.1e-09 Score=84.54 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=77.2
Q ss_pred EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC
Q psy871 115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS 194 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 194 (249)
.+.++|+||++-..+..- +.....|+.++++..+..+.-....+.+..+- .+.-+.++++-||+|+..+..
T Consensus 126 HVSfVDCPGHDiLMaTML------nGaAvmDaalLlIA~NEsCPQPQTsEHLaave---iM~LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATML------NGAAVMDAALLLIAGNESCPQPQTSEHLAAVE---IMKLKHIIILQNKIDLIKESQ 196 (466)
T ss_pred EEEeccCCchHHHHHHHh------cchHHhhhhhhhhhcCCCCCCCchhhHHHHHH---HhhhceEEEEechhhhhhHHH
Confidence 477999999986654443 66677899999998887655433333333321 113478999999999987433
Q ss_pred H-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 195 E-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
. ++.++..+.+. .......|++++||.-++|++-+.+++.+.|
T Consensus 197 A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 2 23333333322 1223457999999999999999999998865
No 327
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.93 E-value=1.7e-09 Score=75.10 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=42.8
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
+.++.++.|++.+...++... |...+. .......|.++++||+|+.++. + ..+...
T Consensus 45 ~s~~~~~~v~~~~~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~~~---~---~~~~~~--------------- 100 (124)
T smart00010 45 ESFDVVLQCWRVDDRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEEER---Q---VATEEG--------------- 100 (124)
T ss_pred CCCCEEEEEEEccCHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHhhC---c---CCHHHH---------------
Confidence 445666667777777666544 443333 2233568899999999974321 1 111111
Q ss_pred CceeEEEeeeccccchH
Q psy871 222 RPIELFMCSVLMRQGYG 238 (249)
Q Consensus 222 ~~~~~~~~Sa~~g~gv~ 238 (249)
.+++++|++++.|+.
T Consensus 101 --~~~~~~s~~~~~~~~ 115 (124)
T smart00010 101 --LEFAETSAKTPEEGE 115 (124)
T ss_pred --HHHHHHhCCCcchhh
Confidence 346678889988874
No 328
>PRK00098 GTPase RsgA; Reviewed
Probab=98.89 E-value=5.7e-09 Score=83.54 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=59.3
Q ss_pred ccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCCCcEEEEEecCCCCCCC-CHHHHHHHhhhcccccCcccCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLASCPVLILGNKIDKHGAA-SEEEIRQYFGLYGLTTGKVATPRSE 218 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
...+|.+++|+|+.++..+... ..++... .. .++|+++|+||+|+.+.. ...++.+.++...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g------------ 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYRAIG------------ 141 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCC------------
Confidence 4789999999999887665443 3444433 22 679999999999996321 1112222232222
Q ss_pred CCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 219 MSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.+++++||+++.|++++++.+..
T Consensus 142 -----~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 142 -----YDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred -----CeEEEEeCCCCccHHHHHhhccC
Confidence 68999999999999999988754
No 329
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.88 E-value=8.3e-09 Score=82.17 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=61.4
Q ss_pred ccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCC
Q psy871 141 ESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM 219 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
+..+|.+++|+|+.++. ++..+..++..+.. .++|+++|+||+|+.+...............
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g------------- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALALG------------- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHhCC-------------
Confidence 57899999999999887 66666666554432 5799999999999976411111122122222
Q ss_pred CCCceeEEEeeeccccchHHHHHHHhh
Q psy871 220 SGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.+++++||+++.|+++++..|..
T Consensus 139 ----~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 139 ----YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ----CeEEEEECCCCccHHHHHhhhcc
Confidence 68999999999999999988764
No 330
>KOG0468|consensus
Probab=98.88 E-value=1e-08 Score=86.91 Aligned_cols=141 Identities=14% Similarity=0.197 Sum_probs=82.9
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
..+.+-++++++|+-.+|||+|+..|.........+.... ...+ .+..+ ...++...
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~---~lry----tD~l~---------------~E~eRg~s- 179 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEA---DLRY----TDTLF---------------YEQERGCS- 179 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccc---cccc----cccch---------------hhHhcCce-
Confidence 4456677999999999999999999975443211110000 0000 00000 00000000
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
....-....-.-.......+.+.|||||-.|..-.. ..+..+|++++|+|+.+.-.+..-+ .++... .
T Consensus 180 -IK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~t------a~l~~sDgvVlvvDv~EGVmlntEr-~ikhai----q 247 (971)
T KOG0468|consen 180 -IKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETT------ASLRLSDGVVLVVDVAEGVMLNTER-IIKHAI----Q 247 (971)
T ss_pred -EeecceEEEEecCcCceeeeeeecCCCcccchHHHH------HHhhhcceEEEEEEcccCceeeHHH-HHHHHH----h
Confidence 000000111122334556788999999988876665 6678899999999999876554322 333333 3
Q ss_pred CCCcEEEEEecCCCCC
Q psy871 176 ASCPVLILGNKIDKHG 191 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~ 191 (249)
.+.|+++|+||+|...
T Consensus 248 ~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 248 NRLPIVVVINKVDRLI 263 (971)
T ss_pred ccCcEEEEEehhHHHH
Confidence 6899999999999743
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.87 E-value=1.5e-08 Score=76.01 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCC
Q psy871 139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRS 217 (249)
Q Consensus 139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
.+++.+|++++|+|++++..-.. ..+ ... ..++|+++|+||+|+... ........+.+.... .
T Consensus 30 ~~~~~ad~il~VvD~~~~~~~~~--~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~---------~ 93 (190)
T cd01855 30 SISPKKALVVHVVDIFDFPGSLI--PRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA---------A 93 (190)
T ss_pred hcccCCcEEEEEEECccCCCccc--hhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH---------h
Confidence 66788999999999987542111 112 111 256899999999999753 223333333310000 0
Q ss_pred CCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 218 EMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.......+++++||++|.|+++++++|.+.+
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0011113689999999999999999998754
No 332
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.87 E-value=4.9e-08 Score=78.53 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=92.1
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCcccc--
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQP-- 94 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~~-- 94 (249)
+...++++|++|+||||++..|...... ..+++.+.+.|.-...+. ...+.. ...+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~-----------------~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA-----------------QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-----------------cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 4568999999999999999999753211 233455555444222111 111111 011100
Q ss_pred cCCcccceeceec--cccccceEEEEEeCCCchhhhh-hHHHHhhhhccc-----cccceEEEEEECCChhhhHhhHHHH
Q psy871 95 VPTLHPTRRVWKD--YFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDE-----SLASSIVFLVDTSDRERFEESKSEL 166 (249)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~ 166 (249)
..+.......... .....+..++++||||...... ..+.+..+.... ...+-.++|+|++... ..+. ..
T Consensus 176 ~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a 252 (318)
T PRK10416 176 KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QA 252 (318)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HH
Confidence 0010000000000 1112445699999999654322 233344433322 3467889999999632 2222 22
Q ss_pred HHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871 167 QCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 167 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
..+.. .-.+.-+|+||.|... ..-.+.+...... .|+..++ +|++++++-
T Consensus 253 ~~f~~----~~~~~giIlTKlD~t~--~~G~~l~~~~~~~-----------------~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 253 KAFHE----AVGLTGIILTKLDGTA--KGGVVFAIADELG-----------------IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred HHHHh----hCCCCEEEEECCCCCC--CccHHHHHHHHHC-----------------CCEEEEe--CCCChhhCc
Confidence 22221 1235578899999543 2334555555545 7787787 888887753
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.87 E-value=3.9e-08 Score=84.43 Aligned_cols=124 Identities=10% Similarity=-0.013 Sum_probs=67.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
+.+|+|+|.+|+||||++|.|++........... ..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~--------------------------------------------~T 153 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM--------------------------------------------GT 153 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCC--------------------------------------------Cc
Confidence 3589999999999999999998765332111000 00
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhh----hHHHHhhhhcccc--ccceEEEEEECCChhhh-H--hhHHHHHHHHh
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEE----SKSELQCLLTDES--LASSIVFLVDTSDRERF-E--ESKSELQCLLT 171 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~----~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~-~--~~~~~~~~~~~ 171 (249)
+.. ........+..+.++||||...... ...........+. ..|++++|...+..... . .+.+.+.++..
T Consensus 154 Tr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG 232 (763)
T TIGR00993 154 TSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG 232 (763)
T ss_pred eEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhC
Confidence 000 0000011234689999999764321 1122222222322 47999999877543221 1 12223333322
Q ss_pred ccCCCCCcEEEEEecCCCCC
Q psy871 172 DESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.. --..+|||.|+.|...
T Consensus 233 ~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 233 PS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HH--hHcCEEEEEeCCccCC
Confidence 11 1257899999999875
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=7.2e-09 Score=73.79 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=53.0
Q ss_pred hhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCC
Q psy871 136 CLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP 215 (249)
Q Consensus 136 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
.+...+..+|++++|+|+.++.+.... .+.+++.... .++|+++|+||+|+..+....++.+.++...
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--------- 71 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEG--------- 71 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcC---------
Confidence 455677899999999999887654422 3344433321 4789999999999965322223333333222
Q ss_pred CCCCCCCceeEEEeeeccccc
Q psy871 216 RSEMSGRPIELFMCSVLMRQG 236 (249)
Q Consensus 216 ~~~~~~~~~~~~~~Sa~~g~g 236 (249)
.+++++||+++.+
T Consensus 72 --------~~ii~iSa~~~~~ 84 (141)
T cd01857 72 --------IVVVFFSALKENA 84 (141)
T ss_pred --------CeEEEEEecCCCc
Confidence 5789999998764
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=98.86 E-value=5.6e-08 Score=78.48 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=59.0
Q ss_pred ceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+..++++||+|.... ......+..+... ...|.+++|+|+..... .......+.. .-..--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~-~~pd~~iLVl~a~~g~d---~~~~a~~f~~----~~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRV-TKPDLVIFVGDALAGND---AVEQAREFNE----AVGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHh-hCCceEEEeeccccchh---HHHHHHHHHh----cCCCCEEEEeeecCCC
Confidence 345999999996542 2233334433332 35788899999976432 1112333321 1234578899999754
Q ss_pred CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
. .-.+.+...... .|+..++ +|++++++..
T Consensus 294 ~--~G~~ls~~~~~~-----------------~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 K--GGAALSIAYVIG-----------------KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred C--ccHHHHHHHHHC-----------------cCEEEEe--CCCChhhccc
Confidence 2 233334344444 6777777 7999987653
No 336
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.84 E-value=1.6e-08 Score=74.50 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=59.7
Q ss_pred HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCccc
Q psy871 134 LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213 (249)
Q Consensus 134 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 213 (249)
..+....++.+|++++|+|++++...... .+...+ .+.|+++|+||+|+.++ ++...+.+...
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~---~~~~~~~~~~~------- 72 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADP---KKTKKWLKYFE------- 72 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCCh---HHHHHHHHHHH-------
Confidence 34445677889999999999876443221 122221 35799999999999643 22222222211
Q ss_pred CCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 214 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
....+++.+||+++.|++++.+.+...
T Consensus 73 -------~~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 73 -------SKGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred -------hcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 011468999999999999999988764
No 337
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.82 E-value=1.2e-08 Score=82.75 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=67.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCC-C---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRL-A---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~-~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+++|+|.|++|||||+|+|++... . ++.+|+.+..+.+.++.. .-..+..+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~-------------r~d~L~~~~~--------- 60 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDP-------------RLDLLAIYIK--------- 60 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechh-------------HHHHHHHHhC---------
Confidence 6899999999999999999998876 3 477788888877732110 0001111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTS 154 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~ 154 (249)
.. ......+.++|.||...-. ........++..++.+|++++|+|..
T Consensus 61 --------~~--~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 61 --------PE--KVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred --------Cc--CcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 00 0122356788999965432 22334567889999999999999985
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.81 E-value=3.6e-08 Score=80.17 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=64.6
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
....|.+++|++.....++..+..++... .. .++|+++|+||+|+......+...++.+.+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~-------------- 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR-------------- 179 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHH--------------
Confidence 36689999999998877887777776543 22 6799999999999976432233333333221
Q ss_pred CCceeEEEeeeccccchHHHHHHHhhh
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
....+++++||+++.|+++++++|...
T Consensus 180 ~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 012689999999999999999998754
No 339
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.81 E-value=1.9e-08 Score=72.83 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=54.4
Q ss_pred ceEEEEEECCChhhhHhhHHHHH-HHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871 145 SSIVFLVDTSDRERFEESKSELQ-CLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP 223 (249)
Q Consensus 145 d~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (249)
|++++|+|+.++.+.... ++. ..+.. .++|+++|+||+|+... ++..+++..+. . ...
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~------------~-~~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR------------H-SYP 59 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH------------h-hCC
Confidence 688999999887655432 333 22222 57999999999999653 33333322221 0 012
Q ss_pred eeEEEeeeccccchHHHHHHHhh
Q psy871 224 IELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 224 ~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.+++++||++|.|++++.+.+.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~ 82 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTK 82 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHH
Confidence 56899999999999999998865
No 340
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.78 E-value=2.8e-07 Score=77.53 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=31.9
Q ss_pred HhHHHHhhhccc--ccceecceEEEeccCCcchHHHHHHHhcCC
Q psy871 4 IWDWFTGVLGYL--GLWTKSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+|..|-....-- .....+..|+|+|..++|||||+.+|.+.+
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e 49 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIE 49 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccC
Confidence 788887666422 122456799999999999999999997654
No 341
>KOG1487|consensus
Probab=98.77 E-value=4.2e-08 Score=74.36 Aligned_cols=181 Identities=19% Similarity=0.233 Sum_probs=98.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC---CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR---LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.++.++|-|.+|||||+..|++.. .++..+|.....+.+.+ ...++++...|+. -. ....+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgi--ie-----------gakdgk 124 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGI--IE-----------GAKDGK 124 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcch--hc-----------ccccCC
Confidence 389999999999999999999754 23555666666666532 3445555444432 10 011133
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhh------------------------------------hhc-c
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQC------------------------------------LLT-D 140 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~------------------------------------~~~-~ 140 (249)
++.+... ..-+.++..+++.|.--.-.-..+.+ .+.. .+. +
T Consensus 125 grg~qvi-avartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~ey 203 (358)
T KOG1487|consen 125 GRGKQVI-AVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEY 203 (358)
T ss_pred CCccEEE-EEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHh
Confidence 3333332 22345667777888754222222221 1100 000 0
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
......+.+=+|++..+ +...+ +.+...+|++.++||+|...- +++.-..
T Consensus 204 R~hsAdi~Lr~DaT~Dd--------LIdvV-egnr~yVp~iyvLNkIdsISi---EELdii~------------------ 253 (358)
T KOG1487|consen 204 RIHSADIALRFDATADD--------LIDVV-EGNRIYVPCIYVLNKIDSISI---EELDIIY------------------ 253 (358)
T ss_pred hhcchheeeecCcchhh--------hhhhh-ccCceeeeeeeeecccceeee---eccceee------------------
Confidence 11123333444443332 11111 111246899999999997642 2222111
Q ss_pred CCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
.-...+++||-.+.|++++++.+.+.++
T Consensus 254 -~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 254 -TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred -eccceeecccccccchHHHHHHHhhcch
Confidence 1245899999999999999998887653
No 342
>KOG0448|consensus
Probab=98.77 E-value=1.8e-07 Score=79.78 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=89.4
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEE-cCCCCchhHH--HHHHhcCCc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFL-GLDNAGKTTL--LHMLKDDRL 91 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~-g~~~~Gkssl--~~~l~~~~~ 91 (249)
+..++.||++.|..++||||++|+++...+. ...|+......+.. ..+...+. -....+|.+. ++.+...--
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Veg---adG~e~vl~~~~s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEG---ADGAEAVLATEGSEEKIDMKTINQLAHALK 181 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecc---cCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence 3577889999999999999999999987754 34455544444432 23333332 2223344333 332222111
Q ss_pred ccccCCcccceec-eecc-ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHH
Q psy871 92 AQPVPTLHPTRRV-WKDY-FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCL 169 (249)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~ 169 (249)
.....+....... |+.. ..--...+.++|.||.+.-.....+.- .....+|++|+|..+.+.-+..... .+...
T Consensus 182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid---~~cldaDVfVlV~NaEntlt~sek~-Ff~~v 257 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWID---SFCLDADVFVLVVNAENTLTLSEKQ-FFHKV 257 (749)
T ss_pred cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHH---HHhhcCCeEEEEecCccHhHHHHHH-HHHHh
Confidence 1111122221111 2111 000011477999999775544444322 3445699999999998864444321 22222
Q ss_pred HhccCCCCCcEEEEEecCCCCCC
Q psy871 170 LTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 170 ~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
.. .+..++++.||.|....
T Consensus 258 -s~---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 258 -SE---EKPNIFILNNKWDASAS 276 (749)
T ss_pred -hc---cCCcEEEEechhhhhcc
Confidence 11 34457788889998653
No 343
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.76 E-value=1.3e-07 Score=75.42 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
.-...|+++|++|+|||||+|.|++...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l 48 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL 48 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc
Confidence 3467899999999999999999987643
No 344
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.74 E-value=5.3e-08 Score=72.14 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=49.0
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
...+++.++|........ .....+...-..+.++.|+|+.+-.........+...++ ..-++++||+|+.++.
T Consensus 85 ~d~IiIE~sG~a~p~~l~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~------~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLI-LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA------FADVIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHH-HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC------T-SEEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhh-hccccccccccccceeEEeccccccccccchhhhhhcch------hcCEEEEeccccCChh
Confidence 345667888855444441 112233334567899999999775333333334433332 3348889999998754
Q ss_pred -CHHHHHHHhhhcc
Q psy871 194 -SEEEIRQYFGLYG 206 (249)
Q Consensus 194 -~~~~~~~~~~~~~ 206 (249)
..+.+.+.++.++
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 2366777777665
No 345
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.74 E-value=5.7e-08 Score=70.44 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=41.2
Q ss_pred ceEEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
+...+++|++|...-....+.. ...+......+.++.++|+.+......-...+.+-+. ..-++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~------~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA------FADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH------HCCEEEEecccC
Confidence 3457889999965444443321 2234556778999999998764332211112222211 233678999996
No 346
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.73 E-value=6.1e-08 Score=76.90 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=60.9
Q ss_pred HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCccc
Q psy871 134 LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213 (249)
Q Consensus 134 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 213 (249)
+.+....++.+|++++|+|+..+.+.... .+.+++ .++|+++|+||+|+.+. .+...+.+.+..
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~------ 75 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADP---AVTKQWLKYFEE------ 75 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCH---HHHHHHHHHHHH------
Confidence 34455677889999999999876544332 333332 36899999999999643 223333222210
Q ss_pred CCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 214 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
...+++.+||+++.|++++.+.+.+.
T Consensus 76 --------~~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 76 --------KGIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred --------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 01468999999999999998888764
No 347
>KOG1954|consensus
Probab=98.73 E-value=2e-07 Score=74.25 Aligned_cols=151 Identities=20% Similarity=0.191 Sum_probs=82.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcc--------cceeeeeeeeceEEEE-cCCCCchhHHHHHH
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPI--------LGYLGLWTKSGKLLFL-GLDNAGKTTLLHML 86 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~--------~~~~~~~~~~~~~~~~-g~~~~Gkssl~~~l 86 (249)
..+-|+++|+=..||||+++-|+..++. .+.||...- .+.+ +.....+. ..+..|-+.|=+++
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~i----pGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSI----PGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCccccc----CCceeeecCCCchhhhhhhHHHH
Confidence 3567999999999999999999988876 233332211 1111 11111111 13344444443333
Q ss_pred hcCCcccccCCcccceeceeccccc-cceEEEEEeCCCchhhhhh--HH---HHhhhhccccccceEEEEEECCChhhhH
Q psy871 87 KDDRLAQPVPTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEES--KS---ELQCLLTDESLASSIVFLVDTSDRERFE 160 (249)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~--~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 160 (249)
.+.-.. ..+++ .-..+.++||||.-+-+.. .+ .-...-....++|.|+++||+...+--.
T Consensus 133 lnRf~c--------------sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd 198 (532)
T KOG1954|consen 133 LNRFMC--------------SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 198 (532)
T ss_pred HHHHHH--------------hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence 321110 00111 1124789999993321111 11 0111225678999999999998765544
Q ss_pred hhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 161 ESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+.+..+ ..+.=.+-||+||+|.++.
T Consensus 199 Ef~~vi~aL----kG~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 199 EFKRVIDAL----KGHEDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHHHHHHh----hCCcceeEEEeccccccCH
Confidence 444444444 2255667788999998863
No 348
>KOG1707|consensus
Probab=98.72 E-value=3.3e-07 Score=76.99 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=49.2
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
+....+++-|.+.. ....... .. ..||+++++||++++.+|............. ...|+++|++|+|+.
T Consensus 471 g~~k~LiL~ei~~~-~~~~l~~------ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 471 GQQKYLILREIGED-DQDFLTS------KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLD 539 (625)
T ss_pred cccceEEEeecCcc-ccccccC------cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccc
Confidence 44456777776643 1111111 11 6799999999999999999877655554332 789999999999996
Q ss_pred C
Q psy871 191 G 191 (249)
Q Consensus 191 ~ 191 (249)
+
T Consensus 540 e 540 (625)
T KOG1707|consen 540 E 540 (625)
T ss_pred h
Confidence 5
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.70 E-value=3.4e-07 Score=72.23 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=90.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCcccc-
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQP- 94 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~~- 94 (249)
.+...++++|++|+||||++..|...-.. ...++.++..|.-..... +..+.. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~-----------------~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~ 132 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK-----------------QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIK 132 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh-----------------cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEe
Confidence 34568999999999999999998642111 223445554443211111 111111 111100
Q ss_pred -cCCcccceecee--ccccccceEEEEEeCCCchhhhhh-HHHHhhhhcccc-----ccceEEEEEECCChhhhHhhHHH
Q psy871 95 -VPTLHPTRRVWK--DYFPAVDAIVFLVDTSDRERFEES-KSELQCLLTDES-----LASSIVFLVDTSDRERFEESKSE 165 (249)
Q Consensus 95 -~~~~~~~~~~~~--~~~~~~~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~ 165 (249)
..+......... ......+..++++||+|....... ...+..+..... .+|.+++|+|++... ..+. .
T Consensus 133 ~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~ 209 (272)
T TIGR00064 133 QKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-Q 209 (272)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-H
Confidence 000000000000 011124467999999996543222 223333333322 488999999997632 2222 2
Q ss_pred HHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 166 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
...+.+. -.+.-+|+||.|-... .-.+.+...... .|+..++ +|++++++.
T Consensus 210 ~~~f~~~----~~~~g~IlTKlDe~~~--~G~~l~~~~~~~-----------------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 210 AKVFNEA----VGLTGIILTKLDGTAK--GGIILSIAYELK-----------------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred HHHHHhh----CCCCEEEEEccCCCCC--ccHHHHHHHHHC-----------------cCEEEEe--CCCChHhCc
Confidence 3333221 1356788999997542 334444444444 6777777 788887764
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.65 E-value=4.4e-08 Score=71.09 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=20.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+..+|+++|+||+|||||+|+|.+..
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC
Confidence 45678889999999999999987644
No 351
>KOG0082|consensus
Probab=98.64 E-value=8.9e-07 Score=71.14 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=84.4
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh----------HhhHHHHHHHHh
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF----------EESKSELQCLLT 171 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----------~~~~~~~~~~~~ 171 (249)
.+.....+.-.+..+.++|.+|+..-..-+- .....++++++|++.++.+.. ......+..+..
T Consensus 183 ~GI~e~~F~~k~~~f~~~DvGGQRseRrKWi------hcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 183 TGIVEVEFTIKGLKFRMFDVGGQRSERKKWI------HCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred CCeeEEEEEeCCCceEEEeCCCcHHHhhhHH------HhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 3333344444556688999999754333222 366789999999999874322 223345666777
Q ss_pred ccCCCCCcEEEEEecCCCCC-----------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871 172 DESLASCPVLILGNKIDKHG-----------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 234 (249)
.....+.++++.+||.|+.. ....+++..+++......... ..+.+-+..+.|..-
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~-------~~k~iy~h~T~AtDT 329 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKN-------KDKKIYVHFTCATDT 329 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcc-------cCCcceEEEEeeccH
Confidence 77777899999999999854 112333433333222111111 114567788899999
Q ss_pred cchHHHHHHHhhhc
Q psy871 235 QGYGDGFRWLANYI 248 (249)
Q Consensus 235 ~gv~~l~~~l~~~i 248 (249)
.+++.+|..+.+.|
T Consensus 330 ~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 330 QNVQFVFDAVTDTI 343 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877643
No 352
>KOG1533|consensus
Probab=98.62 E-value=6.9e-09 Score=77.37 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=47.8
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhcc---ccccceEEEEEEC---CChhhhHhh-HHHHHHHHhccCCCCCcEEE
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTD---ESLASSIVFLVDT---SDRERFEES-KSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~---~~~~d~ii~v~d~---~~~~~~~~~-~~~~~~~~~~~~~~~~p~iv 182 (249)
+.....++++|.||+-++..........++. ....-+++.++|+ ++|..|-.. ---+..++. ...|-|-
T Consensus 93 ~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVN 168 (290)
T KOG1533|consen 93 KPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVN 168 (290)
T ss_pred hhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchh
Confidence 3345578999999977654444433333333 3445555667776 567666443 112233322 5789999
Q ss_pred EEecCCCCC
Q psy871 183 LGNKIDKHG 191 (249)
Q Consensus 183 v~nK~Dl~~ 191 (249)
|+.|+|+..
T Consensus 169 vlSK~Dl~~ 177 (290)
T KOG1533|consen 169 VLSKADLLK 177 (290)
T ss_pred hhhHhHHHH
Confidence 999999865
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.62 E-value=1.8e-07 Score=74.60 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=60.8
Q ss_pred HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCccc
Q psy871 134 LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213 (249)
Q Consensus 134 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 213 (249)
+.+....++.+|++++|+|+..+.+.... .+.+.+ .++|+++|+||+|+.+. .....+.+.+..
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~-----~~kp~iiVlNK~DL~~~---~~~~~~~~~~~~------ 78 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII-----GNKPRLLILNKSDLADP---EVTKKWIEYFEE------ 78 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh-----CCCCEEEEEEchhcCCH---HHHHHHHHHHHH------
Confidence 34455677889999999999876544332 333332 36899999999999643 222233222210
Q ss_pred CCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 214 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
...+++.+||+++.|++++.+.+.+.
T Consensus 79 --------~~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 79 --------QGIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred --------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 01568999999999999999887654
No 354
>KOG0459|consensus
Probab=98.61 E-value=1.4e-08 Score=81.45 Aligned_cols=193 Identities=17% Similarity=0.103 Sum_probs=108.8
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
+..-+..+.+++++|+..+||||+-..+...--.....|.........-..........-.+.. .
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn---------------~ 136 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTN---------------G 136 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCc---------------h
Confidence 3334577889999999999999988777532111111111111111100000001111111111 0
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHh---hHHHHH
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEE---SKSELQ 167 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~---~~~~~~ 167 (249)
.....+.+......+++.....+.+.|+||+..|....- ....++|.-++|+.+.. ...|.. .++...
T Consensus 137 EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI------~GasqAD~~vLvisar~gefetgFerGgQTREha~ 210 (501)
T KOG0459|consen 137 EERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMI------GGASQADLAVLVISARKGEFETGFEKGGQTREHAM 210 (501)
T ss_pred hhhhccceeeeeeEEEEecceeEEeeccCcccccchhhc------cccchhhhhhhhhhhhhchhhcccccccchhHHHH
Confidence 111333444555566777777899999999998876655 77889999999998843 233322 121211
Q ss_pred HHHhccCCCCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 168 CLLTDESLASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
.... ..-...|+++||+|-+...+. +.+..+++.+. .....+..+++||..+|.++.+
T Consensus 211 Lakt---~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g-----------~n~~~d~~f~p~sg~tG~~~k~ 276 (501)
T KOG0459|consen 211 LAKT---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLG-----------FNPKPDKHFVPVSGLTGANVKD 276 (501)
T ss_pred HHHh---hccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhc-----------ccCCCCceeeecccccccchhh
Confidence 1111 145778999999998763332 23333444332 1223567899999999999987
Q ss_pred HH
Q psy871 240 GF 241 (249)
Q Consensus 240 l~ 241 (249)
..
T Consensus 277 ~~ 278 (501)
T KOG0459|consen 277 RT 278 (501)
T ss_pred cc
Confidence 54
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.58 E-value=3.3e-07 Score=75.36 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=59.8
Q ss_pred ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCC
Q psy871 139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRS 217 (249)
Q Consensus 139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
.....++++++|+|+.+... .+...+.+.. .+.|+++|+||+|+.. ....+++.++++.....
T Consensus 59 ~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~--------- 122 (360)
T TIGR03597 59 SLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE--------- 122 (360)
T ss_pred hcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH---------
Confidence 44567899999999976431 1112333332 3689999999999975 33455555554322100
Q ss_pred CCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 218 EMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.......++++||++|.|++++++.|.+.
T Consensus 123 -~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 -LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred -cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111358999999999999999998753
No 356
>KOG1547|consensus
Probab=98.56 E-value=6.3e-07 Score=67.32 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA 47 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~ 47 (249)
+++|.|||.+|.|||||+|.|....+.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~ 72 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVS 72 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHh
Confidence 579999999999999999999876654
No 357
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.56 E-value=1.2e-07 Score=69.55 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
....+++++|.||+|||||+|+|++...
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 3347999999999999999999987544
No 358
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.56 E-value=7.4e-07 Score=71.60 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=60.3
Q ss_pred eEEEEEeCCCchhhhhhHHHHh--hhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQ--CLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~--~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
...+++.++|...-........ ..+...-..|.++.|+|+.+...-.. .......-+ ...-++++||.|++
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi------a~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL------AFADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH------HhCcEEEEecccCC
Confidence 3477888988654433333221 12344556789999999988543322 222222222 23458999999999
Q ss_pred CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee
Q psy871 191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV 231 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (249)
++...+.+...++.++ +..+++.+|.
T Consensus 159 ~~~~l~~l~~~l~~ln---------------p~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLRKLN---------------PRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHHHhC---------------CCCeEEEccc
Confidence 8655666677777665 4577888777
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.56 E-value=6.9e-07 Score=68.58 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+-..|+|+|++++|||||+|+|++.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCC
Confidence 34458999999999999999999886
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.53 E-value=1.7e-06 Score=71.97 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+..++++||+|..... .....+..+.. ...++.+++|+|++....... ....+.. .-.+.-+|+||.|-..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~-~~~p~e~lLVlda~~Gq~a~~---~a~~F~~----~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAE-AIQPDNIIFVMDGSIGQAAEA---QAKAFKD----SVDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhh-hcCCcEEEEEeccccChhHHH---HHHHHHh----ccCCcEEEEECccCCC
Confidence 4678999999965432 22333333332 345788999999976432222 2223311 2246678899999643
No 361
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.53 E-value=5.3e-06 Score=66.96 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=47.7
Q ss_pred EEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 115 IVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
..+++.++|...-..+.+.+ ...+...-..+.++.|+|+.+...... ......++ ...-++++||+|+..
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-------~~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-------GYADRILLTKTDVAG 164 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-------HhCCEEEEeccccCC
Confidence 46778899976544444422 122333445689999999987432211 11111122 123478899999987
Q ss_pred CCCHHHHHHHhhhcc
Q psy871 192 AASEEEIRQYFGLYG 206 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~ 206 (249)
+ .+++.+.++.++
T Consensus 165 ~--~~~~~~~l~~ln 177 (318)
T PRK11537 165 E--AEKLRERLARIN 177 (318)
T ss_pred H--HHHHHHHHHHhC
Confidence 4 356666666554
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=1.7e-06 Score=70.63 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=76.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcC----Ccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD----RLAQP 94 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~----~~~~~ 94 (249)
.++.+|+++|+.||||||++..|...-.. ...++.++..|.-. .....++... .++..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~-----------------~GkkVglI~aDt~R-iaAvEQLk~yae~lgipv~ 300 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHG-----------------KKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVI 300 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHH-----------------cCCcEEEEecCCcc-hHHHHHHHHHhhhcCCcEE
Confidence 44579999999999999999999742110 11233333333221 1112222211 01000
Q ss_pred -cCCcccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871 95 -VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172 (249)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 172 (249)
..............-...+..++++||+|...... ....+..++.. ...+.+++|+|++... .++...+..+.
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~-~~PdevlLVLsATtk~--~d~~~i~~~F~-- 375 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQ-VEPDYICLTLSASMKS--KDMIEIITNFK-- 375 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhh-cCCCeEEEEECCccCh--HHHHHHHHHhc--
Confidence 00000111111111111245799999999654222 22333333332 3467788999986532 22222333331
Q ss_pred cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
.-..-=+++||.|-.. ..-.+.+......
T Consensus 376 ---~~~idglI~TKLDET~--k~G~iLni~~~~~ 404 (436)
T PRK11889 376 ---DIHIDGIVFTKFDETA--SSGELLKIPAVSS 404 (436)
T ss_pred ---CCCCCEEEEEcccCCC--CccHHHHHHHHHC
Confidence 1123457899999754 2344555555544
No 363
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.50 E-value=1.8e-06 Score=70.61 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=29.3
Q ss_pred HhHHHHhhhcc-------cccc-eecceEEEeccCCcchHHHHHHHhcC
Q psy871 4 IWDWFTGVLGY-------LGLW-TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 4 ~~~~~~~~~~~-------~~~~-~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.|+|....+.. ...+ .+...++++||+|+||||++..|...
T Consensus 112 ~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 112 AADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56666655432 2222 34569999999999999999999753
No 364
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.49 E-value=1.9e-06 Score=72.11 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=39.2
Q ss_pred EEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCCC
Q psy871 115 IVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKHG 191 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 191 (249)
.++++||+|...... ..+.+..+ .....+|.+++|+|++... +.......+. ...+ .-+|+||.|-..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l-~~~~~pdevlLVvda~~gq---~av~~a~~F~-----~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEI-KEAVKPDEVLLVIDATIGQ---QAKNQAKAFH-----EAVGIGGIIITKLDGTA 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHH-HHHhcccceeEEEeccccH---HHHHHHHHHH-----hcCCCCEEEEecccCCC
Confidence 689999999654332 22222222 2234688999999997742 2222333321 1233 457889999643
No 365
>KOG0467|consensus
Probab=98.48 E-value=4.8e-07 Score=78.10 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=78.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...++++++.+...|||||...|...+... ....+||-.++...-..+ ..
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvi------------------------s~rlagkirfld~redeq------~r 56 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVI------------------------SSRLAGKIRFLDTREDEQ------TR 56 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEe------------------------chhhccceeeccccchhh------hh
Confidence 345689999999999999999997654321 112222222221110000 00
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+.+-....-.+...++.+.++|+|||-.|.+... +....+|..++++|+...--.+... .+.+... .+.
T Consensus 57 gitmkss~is~~~~~~~~nlidspghvdf~sevs------sas~l~d~alvlvdvvegv~~qt~~-vlrq~~~----~~~ 125 (887)
T KOG0467|consen 57 GITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS------SASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI----EGL 125 (887)
T ss_pred ceeeeccccccccCceEEEEecCCCccchhhhhh------hhhhhcCCcEEEEeeccccchhHHH-HHHHHHH----ccC
Confidence 0000000011234577899999999999988776 5567899999999998743332221 2333222 467
Q ss_pred cEEEEEecCCC
Q psy871 179 PVLILGNKIDK 189 (249)
Q Consensus 179 p~ivv~nK~Dl 189 (249)
.+++|+||+|.
T Consensus 126 ~~~lvinkidr 136 (887)
T KOG0467|consen 126 KPILVINKIDR 136 (887)
T ss_pred ceEEEEehhhh
Confidence 78899999994
No 366
>KOG2655|consensus
Probab=98.48 E-value=1.5e-06 Score=69.88 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.6
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA 47 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~ 47 (249)
.+.+.++|.+|.|||||+|.|....+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~ 47 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLS 47 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhcc
Confidence 478999999999999999999876444
No 367
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.47 E-value=3.7e-06 Score=61.98 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=40.8
Q ss_pred ceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+..++++|++|...... ....+..+. .....+.+++|+|+....... .....+.+. .+ ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~-~~~~~~~~~lVv~~~~~~~~~---~~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIK-RVVKPDEVLLVVDAMTGQDAV---NQAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHH-hhcCCCeEEEEEECCCChHHH---HHHHHHHhh---CC-CCEEEEECCcCCC
Confidence 44578899999653322 222222222 234589999999997543222 234444322 22 3567789999765
No 368
>KOG0705|consensus
Probab=98.44 E-value=2.9e-07 Score=76.72 Aligned_cols=160 Identities=14% Similarity=0.193 Sum_probs=100.7
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
|+-.-++.|++|||..++|||+|+.+.+.+.+. ...|.-+.....+
T Consensus 24 lsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~--------------------------------- 70 (749)
T KOG0705|consen 24 LSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEV--------------------------------- 70 (749)
T ss_pred eecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeE---------------------------------
Confidence 344467889999999999999999997654433 1112111111111
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
.....+..+.+.|..+.... .+-..+|++|+||...+..+|+.......++-...
T Consensus 71 --------------vv~gqs~lLlirdeg~~~~a-----------Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r 125 (749)
T KOG0705|consen 71 --------------VVDGQSHLLLIRDEGGHPDA-----------QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYR 125 (749)
T ss_pred --------------EeeccceEeeeecccCCchh-----------hhhhhccceEEEEEeccccCHHHHHHHHhhccccc
Confidence 12334455677777773322 12246899999999999999988765555554443
Q ss_pred CCCCCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....+|.++++++.-... .....+....+... ....+|+.+|.+|.+++..|+.+...+
T Consensus 126 ~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~----------------krcsy~et~atyGlnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 126 NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM----------------KRCSYYETCATYGLNVERVFQEVAQKI 188 (749)
T ss_pred ccccchHHhhcCcchhhcccccccchHHHHHHHHhc----------------CccceeecchhhhhhHHHHHHHHHHHH
Confidence 446788898888653311 11122222222222 227899999999999999999887653
No 369
>KOG3905|consensus
Probab=98.44 E-value=8.6e-06 Score=64.08 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=92.6
Q ss_pred eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccc--eEEEEEeCCCchhhhhhHHHHhhhhcccc
Q psy871 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVD--AIVFLVDTSDRERFEESKSELQCLLTDES 142 (249)
Q Consensus 65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~D~~g~~~~~~~~~~~~~~~~~~~ 142 (249)
....+.+.|.+..||++++.++.+.+. ..++.+..+.+...+-+..| ..+-+|-.-|.- +. ...++..+....
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~--~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~-~h--~~LLk~al~ats 125 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSET--VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDL-YH--KGLLKFALPATS 125 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccc--cCCCCCcceEEEecccccchhhhhcceEEecCch-hh--hhHHhhcccccC
Confidence 456788899999999999999987662 33344444433333222222 224456555421 11 112233344444
Q ss_pred ccceE-EEEEECCChhhhHh-hHHHH----------------------------HHHHh-----------c---------
Q psy871 143 LASSI-VFLVDTSDRERFEE-SKSEL----------------------------QCLLT-----------D--------- 172 (249)
Q Consensus 143 ~~d~i-i~v~d~~~~~~~~~-~~~~~----------------------------~~~~~-----------~--------- 172 (249)
.++.+ |++.|.+++..+.+ +..|. +++.. .
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d 205 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD 205 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence 55554 67889998733322 22211 11100 0
Q ss_pred ------------cCCCCCcEEEEEecCCCCC----CC-CH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee
Q psy871 173 ------------ESLASCPVLILGNKIDKHG----AA-SE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV 231 (249)
Q Consensus 173 ------------~~~~~~p~ivv~nK~Dl~~----~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 231 (249)
--+.++|++||++|||.+. +. -+ +-++..++.+-.+ .....+.+|+
T Consensus 206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr-------------~GaaLiyTSv 272 (473)
T KOG3905|consen 206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR-------------YGAALIYTSV 272 (473)
T ss_pred cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH-------------cCceeEEeec
Confidence 0013589999999999854 11 11 1122222222110 1267899999
Q ss_pred ccccchHHHHHHHhhhc
Q psy871 232 LMRQGYGDGFRWLANYI 248 (249)
Q Consensus 232 ~~g~gv~~l~~~l~~~i 248 (249)
|...|++-+..+|..++
T Consensus 273 KE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 273 KETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccccchHHHHHHHHHHh
Confidence 99999999999998753
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.44 E-value=3.7e-07 Score=64.97 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.+++++|.+|+|||||+|+|++..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999997654
No 371
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.43 E-value=7.1e-06 Score=68.83 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=76.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCC-CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCccc-cc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQ-PV 95 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~-~~ 95 (249)
...++++|+.|+||||++-.|..... .. ...++.++..+.-..... +..+.. ...+. ..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----------------~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----------------GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV 284 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----------------CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc
Confidence 34899999999999999998864321 00 123444444433211111 111110 00110 00
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
.......... -...+..++++||+|...... ....+..++.......-..+|++++... ..+...+..+
T Consensus 285 ~~~~~l~~~l---~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f----- 354 (424)
T PRK05703 285 YDPKELAKAL---EQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF----- 354 (424)
T ss_pred CCHHhHHHHH---HHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh-----
Confidence 0111111111 112346799999999754322 2233344444222345667888886532 2222233333
Q ss_pred CCCCc-EEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 175 LASCP-VLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 175 ~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
...+ --+++||.|-... ...+.+.+...+
T Consensus 355 -~~~~~~~vI~TKlDet~~--~G~i~~~~~~~~ 384 (424)
T PRK05703 355 -SRLPLDGLIFTKLDETSS--LGSILSLLIESG 384 (424)
T ss_pred -CCCCCCEEEEeccccccc--ccHHHHHHHHHC
Confidence 2222 3688999997442 335556555554
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=4.3e-07 Score=72.47 Aligned_cols=28 Identities=25% Similarity=0.595 Sum_probs=22.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
.+..+++++|.||+|||||+|+|++...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 4556899999999999999999976544
No 373
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=4.8e-07 Score=71.81 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.+..+++++|.||+|||||+|+|.+..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~ 142 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKK 142 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999997654
No 374
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.41 E-value=6.8e-07 Score=67.00 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=21.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+...++++|.+|+|||||+|+|.+..
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 44689999999999999999997643
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.40 E-value=1.6e-07 Score=77.13 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=70.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
..+++++|.+|||||||+|+|+........ .. ...+ .++.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~--------~~-----------~~s~---------------------~pgt 193 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKD--------VI-----------TTSP---------------------FPGT 193 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcc--------ee-----------eecC---------------------CCCe
Confidence 368999999999999999999864321000 00 0001 1112
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHH----hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL----QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
|.......+ +..+.++||||..........+ ...+...+......++++..+.-.+..+. .+ .++.. .
T Consensus 194 T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~-~~-d~~~~---~ 265 (360)
T TIGR03597 194 TLDLIEIPL---DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLA-RF-DYLKG---E 265 (360)
T ss_pred EeeEEEEEe---CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEE-EE-EEecC---C
Confidence 222211111 2236799999965443322221 11233345567777888776643333221 01 11111 3
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhh
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFG 203 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 203 (249)
...+.+.++|.+.......+...+.++
T Consensus 266 ~~~~~~~~~~~~~~h~t~~~~a~~~~~ 292 (360)
T TIGR03597 266 KTSFTFYVSNELNIHRTKLENADELYN 292 (360)
T ss_pred ceEEEEEccCCceeEeechhhhHHHHH
Confidence 556778888888766444454544444
No 376
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.40 E-value=1.1e-05 Score=66.06 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.6
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
.+.|+||||+.+|||||+.|+...-+
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhc
Confidence 56899999999999999999986543
No 377
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=2.6e-06 Score=70.20 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=59.4
Q ss_pred hhccccccc-eEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccC
Q psy871 137 LLTDESLAS-SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVAT 214 (249)
Q Consensus 137 ~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
.+..+...+ .+++|+|+.+.. ......+.++. .+.|+++|+||+|+... ...+++.++.+.....
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~------ 128 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKE------ 128 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHh------
Confidence 344555555 888999998743 22222333332 36899999999999752 3344555444432200
Q ss_pred CCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 215 PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 215 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.......++.+||+++.|++++++.+.+.
T Consensus 129 ----~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 ----LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ----cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 11112368999999999999999998654
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.37 E-value=1.3e-07 Score=67.84 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+...++++|++|||||||+|+|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999997653
No 379
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.36 E-value=5.8e-06 Score=67.42 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=49.7
Q ss_pred eEEEEEeCCCchhhhhhHHHHh-hhhccccccceEEEEEECCChhh--h--------------------HhhHHHHHHHH
Q psy871 114 AIVFLVDTSDRERFEESKSELQ-CLLTDESLASSIVFLVDTSDRER--F--------------------EESKSELQCLL 170 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~--~--------------------~~~~~~~~~~~ 170 (249)
...+++.++|......+...+. ..+...-..+.++.|+|+.+-.. + ..+...+..-+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4577899999766555555331 12233346789999999975321 0 00011111111
Q ss_pred hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhc
Q psy871 171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLY 205 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 205 (249)
...-++++||+|+.++...+++.+.++.+
T Consensus 173 ------~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 173 ------ACADLVILNKADLLDAAGLARVRAEIAAE 201 (341)
T ss_pred ------HhCCEEEEeccccCCHHHHHHHHHHHHHh
Confidence 23458899999998765555666666553
No 380
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=1.5e-05 Score=66.36 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=29.1
Q ss_pred HhHHHHhhhc----ccc---cceecceEEEeccCCcchHHHHHHHhcC
Q psy871 4 IWDWFTGVLG----YLG---LWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 4 ~~~~~~~~~~----~~~---~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.|+|+...+. .++ .-.+..+++++|+.|+||||++..|.+.
T Consensus 167 ~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 167 SLKKTISLLTLNLRTIGGDEIIEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5666665553 122 1234569999999999999999998763
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.34 E-value=4.4e-06 Score=68.62 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=56.5
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
....|.+++|+++..+-....++..+... . ..++|.++|+||+||.+. .++..+.+....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~---~~~i~piIVLNK~DL~~~--~~~~~~~~~~~~-------------- 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-W---ESGAEPVIVLTKADLCED--AEEKIAEVEALA-------------- 169 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-H---HcCCCEEEEEEChhcCCC--HHHHHHHHHHhC--------------
Confidence 46789999999997543333333333332 2 267888999999999764 222222222222
Q ss_pred CCceeEEEeeeccccchHHHHHHHh
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
...+++.+|++++.|++++..+|.
T Consensus 170 -~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 170 -PGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -CCCcEEEEECCCCccHHHHHHHhh
Confidence 236899999999999999999885
No 382
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.34 E-value=1.1e-06 Score=63.67 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=16.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...+++++|.+|+|||||+|+|.+.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677777777777777777643
No 383
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.31 E-value=8.6e-07 Score=71.68 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.8
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCC
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
|...+..+++|+|.||+|||||+|+|.+...
T Consensus 127 ~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 127 GLLKRKIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred CCCccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 3345567899999999999999999987654
No 384
>KOG0447|consensus
Probab=98.31 E-value=1.8e-05 Score=66.41 Aligned_cols=181 Identities=17% Similarity=0.106 Sum_probs=95.3
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcccceeeeeeeeceEEE-EcCCCC-----chhHHH
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYLGLWTKSGKLLF-LGLDNA-----GKTTLL 83 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~-~g~~~~-----Gkssl~ 83 (249)
-++....-++|+|||+..+||||.+..+....+- ....|..+...++ ..+-..+ ...+.. -|.+=+
T Consensus 301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTL----sEGPyHVAqFrDSsREfDLTKE~DL 376 (980)
T KOG0447|consen 301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTL----SEGPHHVALFKDSSREFDLTKEEDL 376 (980)
T ss_pred cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEe----ccCcchhhhhccccccccccchhHH
Confidence 3455567789999999999999999999977643 2223333333333 1111111 111111 111112
Q ss_pred HHHhcCC----cccccCCcccceeceeccccccce-EEEEEeCCCchh----------hhhhHHHHhhhhccccccceEE
Q psy871 84 HMLKDDR----LAQPVPTLHPTRRVWKDYFPAVDA-IVFLVDTSDRER----------FEESKSELQCLLTDESLASSIV 148 (249)
Q Consensus 84 ~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~D~~g~~~----------~~~~~~~~~~~~~~~~~~d~ii 148 (249)
.++...- ......|.............+... .+.++|.||... -..+..+.+ .++...++||
T Consensus 377 q~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msK---ayM~NPNAII 453 (980)
T KOG0447|consen 377 AALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISK---AYMQNPNAII 453 (980)
T ss_pred HHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHH---HHhcCCCeEE
Confidence 2222110 001111222222222222333222 377899999432 122222222 5567899999
Q ss_pred EEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHHHHHHHhhh
Q psy871 149 FLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA--ASEEEIRQYFGL 204 (249)
Q Consensus 149 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~ 204 (249)
+|+-..+.+.-.. ....+.......+...|+|++|.|+.+. .+++.+...+..
T Consensus 454 LCIQDGSVDAERS---nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 454 LCIQDGSVDAERS---IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred EEeccCCcchhhh---hHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 9985555433322 3334444445578999999999999763 456777776653
No 385
>PRK10867 signal recognition particle protein; Provisional
Probab=98.31 E-value=8.1e-06 Score=68.30 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
+..++++||+|.-... .....+..+.. ....+.+++|+|+.... +.......+... . ...-+|+||.|-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~-~v~p~evllVlda~~gq---~av~~a~~F~~~---~-~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKA-AVNPDEILLVVDAMTGQ---DAVNTAKAFNEA---L-GLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHH-hhCCCeEEEEEecccHH---HHHHHHHHHHhh---C-CCCEEEEeCccCc
Confidence 4569999999964332 22232332322 23567789999987532 222233333221 1 1235678999954
No 386
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=2.2e-06 Score=70.74 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=76.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchh--HHHHHHhcC-CcccccC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT--TLLHMLKDD-RLAQPVP 96 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks--sl~~~l~~~-~~~~~~~ 96 (249)
+...++++|++||||||++..|....... ...++.+...|.-... ..+..+... ..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~----------------~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-- 283 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH----------------MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-- 283 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh----------------cCCeEEEecccchhhhHHHHHHHHHHhcCCCee--
Confidence 34579999999999999999997422110 1123333333331111 112222111 11100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhcccc--ccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDES--LASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
...... .....+...+..++++||+|... -......+..++.... ..+-.++|+|++.... ++......+ .
T Consensus 284 ~~~~~~-~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f-~-- 357 (432)
T PRK12724 284 PVKDIK-KFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAY-E-- 357 (432)
T ss_pred ehHHHH-HHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHh-c--
Confidence 000001 11112222355689999999652 2333444444444432 2456789999987531 111122222 1
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
.--+-=+|+||.|-.. ..-.+.+......
T Consensus 358 --~~~~~glIlTKLDEt~--~~G~il~i~~~~~ 386 (432)
T PRK12724 358 --SLNYRRILLTKLDEAD--FLGSFLELADTYS 386 (432)
T ss_pred --CCCCCEEEEEcccCCC--CccHHHHHHHHHC
Confidence 1223457899999643 2333444444443
No 387
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.30 E-value=4.1e-06 Score=59.96 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=36.8
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
.+..++++||+|..... . ..+..+|-+++|...+--+...-++. .+ ....-++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~------~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---V------DIASMADTTVVVMAPGAGDDIQAIKA---GI------MEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---h------hHHHhCCEEEEEECCCchhHHHHhhh---hH------hhhcCEEEEeCCC
Confidence 35679999999854221 1 23467899999988874443332211 11 2345588899998
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=98.29 E-value=1.1e-06 Score=71.67 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++++|++|+|||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999754
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=2.3e-05 Score=66.63 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=44.8
Q ss_pred ceEEEEEeCCCchhhhhh-HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFEES-KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+..++++||+|....... ...+.. +... .....++|++.+. +..++...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~-L~aa-~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNW-LRAA-RQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHH-HHHh-hcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 456999999996533222 111221 1211 1235677777765 23333334444421 246779999999744
Q ss_pred CCCHHHHHHHhhhcc
Q psy871 192 AASEEEIRQYFGLYG 206 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~ 206 (249)
..-.+.+.+....
T Consensus 499 --~lG~aLsv~~~~~ 511 (559)
T PRK12727 499 --RFGSALSVVVDHQ 511 (559)
T ss_pred --chhHHHHHHHHhC
Confidence 3445555555444
No 390
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.28 E-value=3.3e-06 Score=79.42 Aligned_cols=76 Identities=21% Similarity=0.147 Sum_probs=46.4
Q ss_pred EEEEEeCCCchhhhh-----hHHHHhhhhccc------cccceEEEEEECCChhh-----h----HhhHHHHHHHHhccC
Q psy871 115 IVFLVDTSDRERFEE-----SKSELQCLLTDE------SLASSIVFLVDTSDRER-----F----EESKSELQCLLTDES 174 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~-----~~~~~~~~~~~~------~~~d~ii~v~d~~~~~~-----~----~~~~~~~~~~~~~~~ 174 (249)
..+++||+|...... ....+..++.-+ .-.+++|+++|+.+... . ..++..+.++....
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l- 240 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL- 240 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 355899999443221 122344444332 34799999999976321 1 23444555554332
Q ss_pred CCCCcEEEEEecCCCCC
Q psy871 175 LASCPVLILGNKIDKHG 191 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~ 191 (249)
....|+.+++||||+..
T Consensus 241 g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 241 GARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCCEEEEEecchhhc
Confidence 25899999999999875
No 391
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.28 E-value=1.6e-06 Score=62.75 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=21.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.+..+++++|.||+|||||+|+|++..
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccc
Confidence 356788899999999999999987643
No 392
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=8.1e-06 Score=66.52 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...++++|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3466889999999999999999974
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.28 E-value=6.2e-06 Score=61.87 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=48.5
Q ss_pred cceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 112 VDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
.+..++++||+|..... ...+.+..+.... ..+-+++|++++....-. . ........ . .+-=+++||.|-.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~--~-~~~~~~~~---~-~~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDL--E-QALAFYEA---F-GIDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHH--H-HHHHHHHH---S-STCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHH--H-HHHHHhhc---c-cCceEEEEeecCC
Confidence 34569999999965433 2334455444444 578889999998854322 2 22222221 1 2335679999975
Q ss_pred CCCCHHHHHHHhhhcc
Q psy871 191 GAASEEEIRQYFGLYG 206 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~ 206 (249)
.. .-.+.+.+....
T Consensus 154 ~~--~G~~l~~~~~~~ 167 (196)
T PF00448_consen 154 AR--LGALLSLAYESG 167 (196)
T ss_dssp ST--THHHHHHHHHHT
T ss_pred CC--cccceeHHHHhC
Confidence 43 345555555554
No 394
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.27 E-value=1.4e-06 Score=64.06 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=23.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
....++++++|.+|+|||||+|+|.+...
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34456899999999999999999976554
No 395
>PRK12288 GTPase RsgA; Reviewed
Probab=98.26 E-value=1.2e-06 Score=71.51 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.3
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++++|+||||||||+|+|.+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 4789999999999999999754
No 396
>KOG0464|consensus
Probab=98.26 E-value=6.6e-07 Score=72.41 Aligned_cols=140 Identities=19% Similarity=0.090 Sum_probs=89.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+-++|+++.+..+||||...|++. ..+-+...|....|.+.--..-... ..+
T Consensus 36 kirnigiiahidagktttterily---------------------~ag~~~s~g~vddgdtvtdfla~er-------erg 87 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILY---------------------LAGAIHSAGDVDDGDTVTDFLAIER-------ERG 87 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHH---------------------HhhhhhcccccCCCchHHHHHHHHH-------hcC
Confidence 345899999999999999999863 2333344454445543222111111 111
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 179 (249)
.+.......++-....+.++||||+-.|.--.+ +.++..|.++.|+|++..-..+.+.-| +.....++|
T Consensus 88 itiqsaav~fdwkg~rinlidtpghvdf~leve------rclrvldgavav~dasagve~qtltvw-----rqadk~~ip 156 (753)
T KOG0464|consen 88 ITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVE------RCLRVLDGAVAVFDASAGVEAQTLTVW-----RQADKFKIP 156 (753)
T ss_pred ceeeeeeeecccccceEeeecCCCcceEEEEHH------HHHHHhcCeEEEEeccCCcccceeeee-----hhccccCCc
Confidence 122222233444566789999999998877676 666778999999999885444443212 233347899
Q ss_pred EEEEEecCCCCCCCCHHHH
Q psy871 180 VLILGNKIDKHGAASEEEI 198 (249)
Q Consensus 180 ~ivv~nK~Dl~~~~~~~~~ 198 (249)
....+||+|.........+
T Consensus 157 ~~~finkmdk~~anfe~av 175 (753)
T KOG0464|consen 157 AHCFINKMDKLAANFENAV 175 (753)
T ss_pred hhhhhhhhhhhhhhhhhHH
Confidence 9999999998764444333
No 397
>KOG0465|consensus
Probab=98.23 E-value=3e-06 Score=71.66 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=86.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+-++|.+.-+-.|||||+.++.+. ..+...-.+..-.| .+.+..+-... ..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Ly---------------------y~G~~~~i~ev~~~-~a~md~m~~er------~r 88 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLY---------------------YTGRIKHIGEVRGG-GATMDSMELER------QR 88 (721)
T ss_pred hhhcccceEEEEecCCceeeheeee---------------------ecceeeeccccccC-ceeeehHHHHH------hc
Confidence 3567899999999999999999753 11222222222222 11111111000 00
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+.+......++...+..+.++|||||..|.--.+ +.+...|..++|+|+...-.-+... .++++.+ ++.
T Consensus 89 gITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVe------RALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~r----y~v 157 (721)
T KOG0465|consen 89 GITIQSAATYFTWRDYRINIIDTPGHVDFTFEVE------RALRVLDGAVLVLDAVAGVESQTET-VWRQMKR----YNV 157 (721)
T ss_pred CceeeeceeeeeeccceeEEecCCCceeEEEEeh------hhhhhccCeEEEEEcccceehhhHH-HHHHHHh----cCC
Confidence 1111111122222367899999999998876666 6667789999999887642222221 3333322 789
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
|.+..+||+|......-..+.+....+.
T Consensus 158 P~i~FiNKmDRmGa~~~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 158 PRICFINKMDRMGASPFRTLNQIRTKLN 185 (721)
T ss_pred CeEEEEehhhhcCCChHHHHHHHHhhcC
Confidence 9999999999987655555555544443
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.22 E-value=3.3e-05 Score=65.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...++++|+.|+||||++..|..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 346899999999999999999975
No 399
>KOG3886|consensus
Probab=98.21 E-value=8.8e-06 Score=60.96 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=81.8
Q ss_pred eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceecccccc-ceEEEEEeCCCchhhhhhHHHHhhhhccccc
Q psy871 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAV-DAIVFLVDTSDRERFEESKSELQCLLTDESL 143 (249)
Q Consensus 65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~ 143 (249)
...++.+.|..++||+++-..++.+...-+....+.+.+..+.+.+.. +..+.+||..|++.+-+..-.. +--.....
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~-q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSS-QEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhh-cchhhhee
Confidence 346888999999999998766664443333334444444444444433 3568899999998664433211 11133567
Q ss_pred cceEEEEEECCChhhh---HhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHH
Q psy871 144 ASSIVFLVDTSDRERF---EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEE 196 (249)
Q Consensus 144 ~d~ii~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 196 (249)
.+++++|||++..+-- ...+.-++.+++. .+...+++...|.|++....++
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARE 135 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHH
Confidence 8999999999886433 3333344445443 2567889999999998743333
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.20 E-value=1.9e-05 Score=66.08 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=40.0
Q ss_pred cceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 112 VDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
.+..++++||+|...... ....+..+.. .-..+.+++|+|+.... +.......+... - ...=+|.||.|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~-~~~p~e~lLVvda~tgq---~~~~~a~~f~~~---v-~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKE-ILNPDEILLVVDAMTGQ---DAVNTAKTFNER---L-GLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHH-hhCCceEEEEEeccchH---HHHHHHHHHHhh---C-CCCEEEEeCccCc
Confidence 345689999999643322 2333333333 33578889999987542 222233333221 1 2345779999953
No 401
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.20 E-value=4.6e-05 Score=59.93 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=46.4
Q ss_pred ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+..++++||+|..... ...+.+..++.. ...+-+++|+|++... .++...+..+. .-.+-=+++||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~-~~~~~~~LVl~a~~~~--~d~~~~~~~f~-----~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQ-VEPDYICLTLSASMKS--KDMIEIITNFK-----DIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhh-hCCCeEEEEEcCccCH--HHHHHHHHHhC-----CCCCCEEEEEeecCCC
Confidence 4579999999965332 223334444432 3456789999987521 12222333331 1234467899999755
Q ss_pred CCCHHHHHHHhhhcc
Q psy871 192 AASEEEIRQYFGLYG 206 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~ 206 (249)
. .-.+.+......
T Consensus 226 ~--~G~~l~~~~~~~ 238 (270)
T PRK06731 226 S--SGELLKIPAVSS 238 (270)
T ss_pred C--ccHHHHHHHHHC
Confidence 2 334444444444
No 402
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.19 E-value=3.5e-06 Score=65.57 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.8
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...++++|++|+|||||+|+|.+.
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 357899999999999999999754
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.17 E-value=1.4e-05 Score=65.35 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=78.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHH---hcCCccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHML---KDDRLAQ 93 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l---~~~~~~~ 93 (249)
.+...|++|||.||||||-+--|.....- .. ...++.++--|+--.-.. +..+ .+-++.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~-----------~~----~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVM-----------LK----KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHh-----------hc----cCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 45789999999999999999888654330 00 233334433332211111 1111 111111
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhH-HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 172 (249)
-...............++.++++||.|........ ..+..+...- ...-+.+|++++.. ..++.+.+..+
T Consensus 265 ---vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f--- 335 (407)
T COG1419 265 ---VVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQF--- 335 (407)
T ss_pred ---EecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHh---
Confidence 11111111111222345579999999976544332 3444454443 44555678888874 23333344443
Q ss_pred cCCCCCcE-EEEEecCCCCCCCCHHHHHHHhhh
Q psy871 173 ESLASCPV-LILGNKIDKHGAASEEEIRQYFGL 204 (249)
Q Consensus 173 ~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~ 204 (249)
...|+ -+++||.|-.. ..-++-+.+..
T Consensus 336 ---~~~~i~~~I~TKlDET~--s~G~~~s~~~e 363 (407)
T COG1419 336 ---SLFPIDGLIFTKLDETT--SLGNLFSLMYE 363 (407)
T ss_pred ---ccCCcceeEEEcccccC--chhHHHHHHHH
Confidence 33333 36799999654 34444444443
No 404
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=3.7e-05 Score=68.23 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=77.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCc--hhHHHHHHhcCC-ccc-ccC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG--KTTLLHMLKDDR-LAQ-PVP 96 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~G--kssl~~~l~~~~-~~~-~~~ 96 (249)
...++++|+.||||||++..|....... . ...++.++..|.-. -..-+..+.... .+. ...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~----~-----------G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~ 249 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR----E-----------GADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK 249 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH----c-----------CCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC
Confidence 4589999999999999999997632110 0 11244455444332 122222222111 100 000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhccC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDES 174 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~ 174 (249)
.......... ...+..++++||+|..... ...+.+..+.. ....+-.++|+|++.. +.+.+ ....+....
T Consensus 250 ~~~~l~~al~---~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~-~~~p~e~~LVLsAt~~~~~l~~---i~~~f~~~~- 321 (767)
T PRK14723 250 DAADLRFALA---ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCG-VGRPVRRLLLLNAASHGDTLNE---VVHAYRHGA- 321 (767)
T ss_pred CHHHHHHHHH---HhcCCCEEEEeCCCCCccCHHHHHHHHHHhc-cCCCCeEEEEECCCCcHHHHHH---HHHHHhhcc-
Confidence 1111111111 1234469999999954322 22332322222 3456678899999863 32332 223331100
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
.--+-=+|+||.|-.. ..-.+.+......
T Consensus 322 -~~~i~glIlTKLDEt~--~~G~iL~i~~~~~ 350 (767)
T PRK14723 322 -GEDVDGCIITKLDEAT--HLGPALDTVIRHR 350 (767)
T ss_pred -cCCCCEEEEeccCCCC--CccHHHHHHHHHC
Confidence 0023457799999654 2334444444444
No 405
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.8e-05 Score=66.81 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=65.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+++-++|+||||.|||||++.|.... ...|+....+.+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~---tk~ti~~i~GPi-------------------------------------- 105 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF---TKQTIDEIRGPI-------------------------------------- 105 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH---HHhhhhccCCce--------------------------------------
Confidence 455677799999999999999985321 111222222222
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
....+....+.+..+|+ ... +++...+.+|.+++++|.+-.-.-..+ .+..++.. ++.
T Consensus 106 --------TvvsgK~RRiTflEcp~--Dl~-------~miDvaKIaDLVlLlIdgnfGfEMETm--EFLnil~~---HGm 163 (1077)
T COG5192 106 --------TVVSGKTRRITFLECPS--DLH-------QMIDVAKIADLVLLLIDGNFGFEMETM--EFLNILIS---HGM 163 (1077)
T ss_pred --------EEeecceeEEEEEeChH--HHH-------HHHhHHHhhheeEEEeccccCceehHH--HHHHHHhh---cCC
Confidence 11223344677777773 222 233455689999999998764222333 23333333 566
Q ss_pred c-EEEEEecCCCCC
Q psy871 179 P-VLILGNKIDKHG 191 (249)
Q Consensus 179 p-~ivv~nK~Dl~~ 191 (249)
| ++-|++..|+..
T Consensus 164 PrvlgV~ThlDlfk 177 (1077)
T COG5192 164 PRVLGVVTHLDLFK 177 (1077)
T ss_pred CceEEEEeeccccc
Confidence 6 667899999976
No 406
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=6.8e-05 Score=62.00 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=78.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcCCcccccCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDDRLAQPVPT 97 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~~~~~~~~~ 97 (249)
++..|+++|+.|+||||.+..|...-..... . ...++.++..|.-...+. +..+... ...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~-~------------~g~~V~lit~Dt~R~aa~eQL~~~a~~-lgvpv~~ 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSD-D------------KSLNIKIITIDNYRIGAKKQIQTYGDI-MGIPVKA 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhc-c------------CCCeEEEEeccCccHHHHHHHHHHhhc-CCcceEe
Confidence 3568999999999999999988642111000 0 123444444444222121 2222211 1011101
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...........-...+..++++||+|...... ....+..++......+-.++|+|++.. ..++...+..+. .
T Consensus 239 ~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~-----~ 311 (388)
T PRK12723 239 IESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS-----P 311 (388)
T ss_pred eCcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc-----C
Confidence 11111111111112456799999999653221 122333344433333468899999885 222222333331 1
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
--+-=+++||.|-.. ..-.+.+......
T Consensus 312 ~~~~~~I~TKlDet~--~~G~~l~~~~~~~ 339 (388)
T PRK12723 312 FSYKTVIFTKLDETT--CVGNLISLIYEMR 339 (388)
T ss_pred CCCCEEEEEeccCCC--cchHHHHHHHHHC
Confidence 124567899999643 2344444444443
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.11 E-value=4.8e-05 Score=57.40 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=31.8
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC-CcEEEEEecCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGNKIDKH 190 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~ 190 (249)
...+|.++.|+|.+.. ++...+ .+.++..+ .+ .++.+|+||.|-.
T Consensus 153 ~~~vD~vivVvDpS~~-sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHHH-HHHHHHHH---hCCceEEEEEeeccch
Confidence 4779999999999875 333222 44555444 45 8999999999854
No 408
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=0.00012 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.8
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+|+|+|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999764
No 409
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.03 E-value=8.7e-06 Score=64.97 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
...++++|++|+|||||+|+|.+..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchh
Confidence 3689999999999999999998654
No 410
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=5e-05 Score=59.83 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=60.9
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHH--HHHHHhhhcccccCcccCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEE--EIRQYFGLYGLTTGKVATPRSEM 219 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
...|-+++|+.+.+|+.-.. .+.+++-.....++..++++||+||.++.... +.......+.
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~---~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g------------- 141 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTN---LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG------------- 141 (301)
T ss_pred cccceEEEEEeccCCCCCHH---HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCC-------------
Confidence 44777788888877654333 22222222222788888999999999864544 4555666665
Q ss_pred CCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 220 SGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+++.+|++++.|++++..+|..+
T Consensus 142 ----y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 142 ----YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ----eeEEEecCcCcccHHHHHHHhcCC
Confidence 899999999999999999988764
No 411
>PRK00098 GTPase RsgA; Reviewed
Probab=98.00 E-value=1.4e-05 Score=64.15 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
...++++|++|||||||+|+|.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999997643
No 412
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.99 E-value=0.00012 Score=54.62 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=42.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCC----CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRL----AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
+..-|+|+||+|||||||+++|..... +...+|..+..+.. ......++ .+..|...+..+.|.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~----~G~dY~fv-----s~~~F~~~i~~~~f~e 71 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE----EGKTYFFL-----TIEEFKKGIADGEFLE 71 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC----CCceeEeC-----CHHHHHHHHHcCCeEE
Confidence 345789999999999999999987542 23455566555555 33333333 4566666666666653
No 413
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.97 E-value=0.00018 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...||++.|+|||||||++..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 357999999999999999999863
No 414
>PRK13796 GTPase YqeH; Provisional
Probab=97.96 E-value=1.5e-05 Score=65.77 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.5
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
..++.++|.+|||||||+|+|..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHh
Confidence 45788999999999999999865
No 415
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=1.4e-05 Score=62.93 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
....+++|++|+|||||+|+|..
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCc
Confidence 44789999999999999999964
No 416
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.95 E-value=4.2e-05 Score=44.32 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=26.6
Q ss_pred ccccceEEEEEECCChhhhHh--hHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871 141 ESLASSIVFLVDTSDRERFEE--SKSELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
.+..+++++++|++..+++.- -...++++.. ...++|+++|.||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 356899999999999877622 1223344422 235899999999998
No 417
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.93 E-value=6.6e-06 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.1
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
..+|.|+.||||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 418
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.90 E-value=1.2e-05 Score=60.95 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=28.5
Q ss_pred CchHhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 1 MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
||.+|+- .-+.+...|+|+|++|||||||+++|...
T Consensus 1 ~~~~~~~--------~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 1 MMNPWLF--------NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCcccc--------CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 6666653 33556778999999999999999999754
No 419
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.89 E-value=1.3e-05 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.3
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
--+++++||+|||||||++++-+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34799999999999999999954
No 420
>KOG1486|consensus
Probab=97.86 E-value=0.00013 Score=55.60 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=71.6
Q ss_pred eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccc
Q psy871 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESL 143 (249)
Q Consensus 65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~ 143 (249)
.+.++.++|.|.+|||+++..+....-... .-...+....+..+...+..+.+.|.||..+- ......+.+.+...+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA-~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAA-SYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhh-ceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 678999999999999999999886432211 11222333444455556677999999996543 3334456777788889
Q ss_pred cceEEEEEECCChhhhHh-hHHHHHHH
Q psy871 144 ASSIVFLVDTSDRERFEE-SKSELQCL 169 (249)
Q Consensus 144 ~d~ii~v~d~~~~~~~~~-~~~~~~~~ 169 (249)
+|.++.|+|++..+.-.. ++.++..+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 999999999998765543 44455544
No 421
>KOG1424|consensus
Probab=97.84 E-value=4e-05 Score=63.91 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=64.5
Q ss_pred hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
|+.+.+.|.++-+.++++|+||.++|+.+|--|... .+..+..+ ....+..++++||+||.....+..+.+++..-+
T Consensus 158 FErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~--dLe~Yvke-~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n 234 (562)
T KOG1424|consen 158 FERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSP--DLEDYVKE-VDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN 234 (562)
T ss_pred hhhCHHHHHHHHHHHhhcceEEEEeecCCccccCCh--hHHHHHhc-cccccceEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 566666777777889999999999999998777543 23333222 125688899999999998666667777776544
Q ss_pred cccCcccCCCCCCCCCceeEEEeeecc
Q psy871 207 LTTGKVATPRSEMSGRPIELFMCSVLM 233 (249)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 233 (249)
+++++-||..
T Consensus 235 -----------------i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 -----------------IPVVFFSALA 244 (562)
T ss_pred -----------------ceEEEEeccc
Confidence 8899999876
No 422
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.82 E-value=1.5e-05 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
+|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 423
>KOG2485|consensus
Probab=97.80 E-value=5.1e-05 Score=59.54 Aligned_cols=30 Identities=20% Similarity=0.552 Sum_probs=25.5
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhc
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.+....++++.|+|.||+|||||+|++..
T Consensus 136 ~irt~~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 136 FIRTLNSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred hhcccCCceeEEEEcCCCCChHHHHHHHHH
Confidence 344467899999999999999999999864
No 424
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.79 E-value=3e-05 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.4
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
--+++|+|++|||||||+|-+.+-+.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccC
Confidence 44799999999999999999987543
No 425
>KOG0780|consensus
Probab=97.79 E-value=0.00016 Score=58.45 Aligned_cols=121 Identities=21% Similarity=0.181 Sum_probs=62.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHH--HHhc-CCccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH--MLKD-DRLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~--~l~~-~~~~~~~ 95 (249)
.++-.|.+||..|+||||.+-.|..-. .. ...++.++..|.--.-++.+ .... ...+.+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~-----kk------------kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y- 160 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYY-----KK------------KGYKVALVCADTFRAGAFDQLKQNATKARVPFY- 160 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHH-----Hh------------cCCceeEEeecccccchHHHHHHHhHhhCCeeE-
Confidence 456689999999999999998885311 00 22333444333322222211 1111 111111
Q ss_pred CCcccceec------eeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCChhhh
Q psy871 96 PTLHPTRRV------WKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSDRERF 159 (249)
Q Consensus 96 ~~~~~~~~~------~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~ 159 (249)
+.....+. .-..+......++++||+|+.. -.++.+.+..... .-..|-+++|+|++-...-
T Consensus 161 -gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~-ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 161 -GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSK-AIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred -ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHh-hcCCCeEEEEEeccccHhH
Confidence 11110000 0122345566799999999543 2333343333322 2348999999999875443
No 426
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.77 E-value=7.3e-05 Score=54.94 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=29.5
Q ss_pred ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
|++++|+|+..+.+..+- .+.++.. ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~--~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCP--QVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCH--HHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 789999999886433221 3333311 11256899999999999753
No 427
>KOG3886|consensus
Probab=97.76 E-value=8.4e-05 Score=55.86 Aligned_cols=115 Identities=19% Similarity=0.305 Sum_probs=70.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
...||+++|.+|||||++-..+..+... ...+|++..-..++ --+++.+.-||.+|...++..+...+.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~R---flGnl~LnlwDcGgqe~fmen~~~~q~---- 75 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVR---FLGNLVLNLWDCGGQEEFMENYLSSQE---- 75 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhh---hhhhheeehhccCCcHHHHHHHHhhcc----
Confidence 3569999999999999998877654422 23334432222221 123344445999999988877653211
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchh---hhhhHHHHhhhhccccccceEEEEE
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRER---FEESKSELQCLLTDESLASSIVFLV 151 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~---~~~~~~~~~~~~~~~~~~d~ii~v~ 151 (249)
...+.+....+.++|....+- +......+..++.....+-+.+++-
T Consensus 76 ----------d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~h 124 (295)
T KOG3886|consen 76 ----------DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLH 124 (295)
T ss_pred ----------hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEe
Confidence 134566778899999987542 2223334455666666666665543
No 428
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=2.2e-05 Score=59.60 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
-++|+||+|||||||||.+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999965
No 429
>KOG2203|consensus
Probab=97.72 E-value=4.4e-05 Score=64.15 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=34.6
Q ss_pred HHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCC
Q psy871 6 DWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA 47 (249)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~ 47 (249)
|+|-+-.+-.--+..=+.|+|+|+..+|||||+|-|.+.++.
T Consensus 22 ~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~ 63 (772)
T KOG2203|consen 22 DYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFR 63 (772)
T ss_pred HHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccChH
Confidence 566666666666677789999999999999999999987766
No 430
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=4.1e-05 Score=55.84 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=42.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC---CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR---LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA 92 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~ 92 (249)
.-++|.||+||||||++++|.... ++...+|..+..+.+ ......|+ -+..|-..+..+.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv----~G~dY~Fv-----s~~EF~~~i~~~~fL 69 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEV----DGVDYFFV-----TEEEFEELIERDEFL 69 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCc----CCceeEeC-----CHHHHHHHHhcCCcE
Confidence 358899999999999999999765 336667777777776 44343333 334455555555544
No 431
>KOG2743|consensus
Probab=97.68 E-value=0.00018 Score=56.28 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=25.4
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCC
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.+...+-+.-.++|.-|||||||+|.++.+.
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccC
Confidence 3445677788999999999999999987553
No 432
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.65 E-value=0.00032 Score=52.23 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=37.6
Q ss_pred eEEEeccCCcchHHHHHHHhcCC---CC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR---LA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA 92 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~---~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~ 92 (249)
-|+++||+||||+|+.++|.... +. ...+|.....+.. ......++ -+..+......+.+.
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~----~g~dy~fv-----s~~ef~~~i~~g~fv 69 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEV----NGVDYHFV-----SREEFEDDIKSGLFL 69 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCc----CCceEEEC-----CHHHHHHHHHcCCeE
Confidence 58999999999999999998774 22 3444555555444 22222222 345555555555443
No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.65 E-value=6.7e-05 Score=57.30 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-|+++||+|+|||||++.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 434
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.63 E-value=5.8e-05 Score=56.04 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=26.3
Q ss_pred HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhc
Q psy871 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
-|+.+...+. -....+...++|.|++|+|||+|++++..
T Consensus 8 e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 8 EIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp HHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677777776 56667778999999999999999999864
No 435
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.61 E-value=0.0014 Score=48.45 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=50.1
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
....++++|+|+.... ... ..+..+|.+++++..+.. +...+...+..+ +. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~------~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l-~~---~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVI------ASLTGADAALLVTEPTPS-GLHDLERAVELV-RH---FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHH------HHHHcCCEEEEEecCCcc-cHHHHHHHHHHH-HH---cCCCEEEEEeCCCCCc
Confidence 3556899999964321 111 334679999999988854 344444333333 22 4578899999999754
Q ss_pred CCCHHHHHHHhhhcc
Q psy871 192 AASEEEIRQYFGLYG 206 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~ 206 (249)
. ..+++.++++..+
T Consensus 158 ~-~~~~~~~~~~~~~ 171 (179)
T cd03110 158 E-IAEEIEDYCEEEG 171 (179)
T ss_pred c-hHHHHHHHHHHcC
Confidence 3 3445666555543
No 436
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0012 Score=54.58 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~~~~~~~~ 96 (249)
.++..|+++|-.||||||..--|..---. ...++.++..|.--..++ +..+...--...++
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-----------------~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-----------------KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH-----------------cCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 55779999999999999998877531000 122333333332222222 11111111000000
Q ss_pred C--cccceecee---ccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHh
Q psy871 97 T--LHPTRRVWK---DYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEE 161 (249)
Q Consensus 97 ~--~~~~~~~~~---~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~ 161 (249)
. ...-..... .........++++||+|+-...+ +...+ ..+...-..|=+++|+|+.......+
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El-~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDEL-KEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHH-HHHHhhcCCCeEEEEEecccchHHHH
Confidence 0 000000111 12223345699999999654332 22222 22334466899999999988654443
No 437
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0002 Score=66.41 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=44.3
Q ss_pred EEEEEeCCCchhhh-----hhHHHHhhhh------ccccccceEEEEEECCChhhh---------HhhHHHHHHHHhccC
Q psy871 115 IVFLVDTSDRERFE-----ESKSELQCLL------TDESLASSIVFLVDTSDRERF---------EESKSELQCLLTDES 174 (249)
Q Consensus 115 ~~~v~D~~g~~~~~-----~~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~---------~~~~~~~~~~~~~~~ 174 (249)
.-.++||.|..... .....+..++ +...-.++||+.+|+.+.-+. ..++.-+.++.. ..
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL 253 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TL 253 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hh
Confidence 45678988844322 2223344332 223447999999999763211 113333444422 22
Q ss_pred CCCCcEEEEEecCCCCC
Q psy871 175 LASCPVLILGNKIDKHG 191 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~ 191 (249)
....|+.+++||.|+..
T Consensus 254 ~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 254 HARLPVYLVLTKADLLP 270 (1188)
T ss_pred ccCCceEEEEecccccc
Confidence 25799999999999976
No 438
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.59 E-value=0.00046 Score=57.71 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=81.6
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh----------hhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR----------ERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
....+.++|..|+.....-|. ......+++++|++.++- ..+.+....+..+.......+.|++
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~------~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ii 307 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWI------HCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPII 307 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGG------GGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred cccccceecCCCCchhhhhHH------HHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceE
Confidence 566789999999864433333 556689999999998753 2244445577777777777899999
Q ss_pred EEEecCCCCC------C--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871 182 ILGNKIDKHG------A--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 182 vv~nK~Dl~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
|++||.|+.. . ...+++..++.......... ....+.+.+..++|.....+..+|
T Consensus 308 l~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~-----~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 308 LFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRN-----NSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp EEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHST-----TTTCS-EEEEEESTTSHHHHHHHH
T ss_pred EeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccC-----CCCCcceEEEEeeecccHHHHHHH
Confidence 9999999632 0 23344444443322111000 000055788899999999999999
Q ss_pred HHHhhhc
Q psy871 242 RWLANYI 248 (249)
Q Consensus 242 ~~l~~~i 248 (249)
+.+.+.|
T Consensus 383 ~~v~~~i 389 (389)
T PF00503_consen 383 NAVKDII 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHhcCcC
Confidence 9887654
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.58 E-value=5.5e-05 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=21.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 440
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.55 E-value=6.8e-05 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.3
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.|++.|++||||||+.++|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999653
No 441
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=6e-05 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999753
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.54 E-value=6.8e-05 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|+|||||++.|.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 47899999999999999999764
No 443
>PRK08233 hypothetical protein; Provisional
Probab=97.54 E-value=6.3e-05 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
|+...|+|.|++|||||||.++|...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhh
Confidence 34578999999999999999999764
No 444
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=6.6e-05 Score=55.18 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|+|+|++|||||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 445
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.53 E-value=9.6e-05 Score=60.04 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=28.8
Q ss_pred HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+-+|++.+. .|...+..-++++||||+|||||.++|...
T Consensus 63 lv~~l~~~a--~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 63 FVNYFKSAA--QGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHH--hcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344555444 344556667899999999999999999853
No 446
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.52 E-value=5.9e-05 Score=54.99 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=17.5
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
||+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 447
>PRK14530 adenylate kinase; Provisional
Probab=97.52 E-value=6.9e-05 Score=57.29 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..++|+|+|+|||||||+.+.|...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 448
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.52 E-value=8e-05 Score=60.06 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEeccCCcchHHHHHHHhcCCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
-++++||+|+||||||+.+.+-+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 449
>KOG2484|consensus
Probab=97.50 E-value=0.00026 Score=57.45 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.9
Q ss_pred hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 135 QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 135 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
+.+...++.+|+|+.|+|+.+|.+-... .+.+..... ..++..|+|+||+|++.....+++..+++...
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~~-~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQA-HGNKKLILVLNKIDLVPREVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHhc-cCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence 4455677899999999999998776543 233332211 14589999999999998777777777777654
No 450
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.50 E-value=0.00017 Score=50.94 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.5
Q ss_pred EEEeccCCcchHHHHHHHhcC
Q psy871 24 LLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~ 44 (249)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.49 E-value=8e-05 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=19.3
Q ss_pred ceEEEeccCCcchHHHHHHHh
Q psy871 22 GKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~ 42 (249)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999985
No 452
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=8e-05 Score=52.91 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=18.5
Q ss_pred EEEeccCCcchHHHHHHHhc
Q psy871 24 LLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~ 43 (249)
|+++|+||||||||.+.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999963
No 453
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.49 E-value=0.003 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+..-+++.||+|+||||.++.|+.+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHh
Confidence 34577889999999999999998653
No 454
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.48 E-value=8.1e-05 Score=56.63 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..+...|+|.|++|||||||.+.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999864
No 455
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.00013 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-+.++||+|||||||++.+...+
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 46789999999999999998654
No 456
>KOG0469|consensus
Probab=97.44 E-value=0.00058 Score=57.16 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=55.4
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC-
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG- 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~- 191 (249)
+..+.++|.||+-.|.+-.. ..++..|..+.|+|.-+.--.+. +..+.+.+. ..+.-++++||.|..-
T Consensus 97 ~FLiNLIDSPGHVDFSSEVT------AALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DRAlL 165 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDRALL 165 (842)
T ss_pred ceeEEeccCCCcccchhhhh------heeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhHHHH
Confidence 45688999999999987766 56677899999999877422221 113333333 3456677899999532
Q ss_pred --CCCHHHHHHHhhhcc
Q psy871 192 --AASEEEIRQYFGLYG 206 (249)
Q Consensus 192 --~~~~~~~~~~~~~~~ 206 (249)
+...+++-+-+++.-
T Consensus 166 ELq~~~EeLyqtf~R~V 182 (842)
T KOG0469|consen 166 ELQLSQEELYQTFQRIV 182 (842)
T ss_pred hhcCCHHHHHHHHHHHH
Confidence 566777766666544
No 457
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.44 E-value=0.00011 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=22.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
++.+.++|+|++|||||||+++|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 45668999999999999999999753
No 458
>KOG2484|consensus
Probab=97.43 E-value=0.00017 Score=58.47 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=31.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPI 56 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~ 56 (249)
.+.++++|+|-||+||||++|+|.........++.+.+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT 287 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT 287 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch
Confidence 77899999999999999999999988876544444433
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.43 E-value=0.00011 Score=51.99 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.|+|+|+.|||||||+..|..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999965
No 460
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.00011 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
--.++|+|+.|||||||++.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 348999999999999999999875
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.42 E-value=0.00011 Score=54.77 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.1
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|++|||||||+++|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 462
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.40 E-value=0.00011 Score=55.78 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+...|+|+|++|||||||+++|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 463
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00016 Score=58.67 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.1
Q ss_pred eEEEeccCCcchHHHHHHHhcCCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
-++++||+|+||||+|+.+.+-+-
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 464
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00012 Score=55.32 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
-|+++|++|||||||++.|-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999965
No 465
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.38 E-value=0.0012 Score=52.30 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=38.8
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK 87 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~ 87 (249)
..+.++++++|++|-|||++++++.........+. .. ...-+.+.-.+.++...|-..+.
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~----~~------~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED----AE------RIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC----Cc------cccEEEEecCCCCChHHHHHHHH
Confidence 45667999999999999999999987554322211 11 11233445566666666655554
No 466
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.38 E-value=0.00013 Score=53.73 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.4
Q ss_pred ceEEEeccCCcchHHHHHHHh
Q psy871 22 GKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~ 42 (249)
-+++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 488999999999999999985
No 467
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.00027 Score=50.98 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=30.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCch
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk 79 (249)
-.++|||++|||||||+--|.+-+-. .++.+.+.|.+..+.
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~-----------------ssGeV~l~G~~L~~l 77 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDP-----------------SSGEVRLLGQPLHKL 77 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCC-----------------CCceEEEcCcchhhc
Confidence 37899999999999999999764433 455666666655543
No 468
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.36 E-value=0.0023 Score=49.82 Aligned_cols=29 Identities=31% Similarity=0.364 Sum_probs=22.7
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhc
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~ 43 (249)
+++.-++ -.++|+||-|+|||||+++|.+
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444333 4689999999999999999975
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.36 E-value=0.00014 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|++|||||||+++|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 470
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.36 E-value=0.00029 Score=50.61 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=23.8
Q ss_pred hcccccceec-ceEEEeccCCcchHHHHHHHhc
Q psy871 12 LGYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 12 ~~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.-+++.-+. -.++++||+|+|||||++.++.
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ecceeeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 3334444333 3799999999999999999965
No 471
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.35 E-value=0.00015 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+++|+|||||||+.++|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 472
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.35 E-value=0.00016 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.7
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
+|.|+|+||+|||||++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 473
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.33 E-value=0.00038 Score=51.78 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=36.7
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC---CC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR---LA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA 92 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~---~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~ 92 (249)
..-|+|+||+|||||||.++|.... +. .+.+|..+..+.. ......++ .+..|.+....+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~----~g~~y~fv-----s~~~f~~~~~~~~fi 69 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEV----DGVDYHFV-----SKEEFERMIKAGEFI 69 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-----TTTSEEE-------HHHHHHHHHTTHEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCccccc----CCcceEEE-----eechhhhhhccccEE
Confidence 3468899999999999999998643 21 3445555555444 22222222 455665555555544
No 474
>KOG1424|consensus
Probab=97.33 E-value=0.00015 Score=60.62 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=28.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 54 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~ 54 (249)
...|++||.||+||||++|+|.+.....+..|.|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPG 347 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPG 347 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCC
Confidence 4799999999999999999999988664444443
No 475
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.33 E-value=0.00016 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 476
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.33 E-value=0.00016 Score=55.34 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.5
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|+|||||++.|++..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 378999999999999999998753
No 477
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00031 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++++|++|+|||||.+.|.+-+
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhccc
Confidence 78999999999999999998743
No 478
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.00019 Score=50.39 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=22.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLA 47 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~ 47 (249)
...++++|++|+||||++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357999999999999999999765433
No 479
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.32 E-value=0.00017 Score=55.00 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=24.3
Q ss_pred ccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 14 YLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 14 ~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-+++.-++ -.++|+|+.|+|||||++.|++..
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444333 378999999999999999998753
No 480
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.31 E-value=0.00018 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEeccCCcchHHHHHHHhcC
Q psy871 24 LLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~ 44 (249)
|+|.|++||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 481
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.31 E-value=0.00023 Score=56.60 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.++..|+|.|++|||||||++.|.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567999999999999999987753
No 482
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.31 E-value=0.00018 Score=53.86 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00018 Score=54.85 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.8
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999874
No 484
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.30 E-value=0.00018 Score=54.50 Aligned_cols=33 Identities=30% Similarity=0.255 Sum_probs=24.9
Q ss_pred cccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 13 GYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 13 ~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.-.++.-++ -.++|+|+.|||||||++.|++..
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333444333 379999999999999999998753
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00018 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 486
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.00078 Score=53.76 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=41.1
Q ss_pred cceEEEEEeCCCchh-hhhhHHHHhhhhccccccce-----EEEEEECCCh-hhhHhhHHHHHHHHhccCCCCCcEEEEE
Q psy871 112 VDAIVFLVDTSDRER-FEESKSELQCLLTDESLASS-----IVFLVDTSDR-ERFEESKSELQCLLTDESLASCPVLILG 184 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~-----ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 184 (249)
.+..+.++||+|+-. -..+...+.+..+.....+. +++++|++.. +.+...+ .+.+.. + --=+++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav------~-l~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAV------G-LDGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhc------C-CceEEE
Confidence 345589999999432 23344555555555554444 8899999884 3333332 333331 1 124679
Q ss_pred ecCCC
Q psy871 185 NKIDK 189 (249)
Q Consensus 185 nK~Dl 189 (249)
||+|-
T Consensus 292 TKlDg 296 (340)
T COG0552 292 TKLDG 296 (340)
T ss_pred Eeccc
Confidence 99994
No 487
>PRK01889 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00044 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+++++|.+|+|||||+|.|.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 48999999999999999999764
No 488
>PTZ00301 uridine kinase; Provisional
Probab=97.28 E-value=0.0002 Score=54.36 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.8
Q ss_pred eecceEEEeccCCcchHHHHHHHh
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~ 42 (249)
|+..-|+|.|++|||||||.+.|.
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHH
Confidence 355789999999999999998775
No 489
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.00035 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
=+|+++|+.|||||||++-|.+.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCc
Confidence 38999999999999999999764
No 490
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.28 E-value=0.00021 Score=59.59 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=29.1
Q ss_pred HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-|+++....+. .-..+|+|+|++|+|||||+++|...
T Consensus 206 ~w~~i~~~vr~----~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 206 YWEYIPTEVRP----FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred HHHhcCHHHhh----CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 57777765532 23568999999999999999999864
No 491
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.27 E-value=0.00018 Score=54.20 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEeccCCcchHHHHHHHhcC
Q psy871 24 LLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~ 44 (249)
|+|+|++|||||||.++|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 492
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.27 E-value=0.00021 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|+|||||++.|.+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.27 E-value=0.00021 Score=54.56 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.+.+..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998753
No 494
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00021 Score=53.33 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.7
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+||.|+|||||++.|+++-
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCcc
Confidence 67899999999999999998753
No 495
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.26 E-value=0.00022 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|+|||||++.|.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 367899999999999999997753
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.26 E-value=0.00021 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 497
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.00022 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=21.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 498
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.26 E-value=0.00021 Score=54.87 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.|.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998753
No 499
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.00022 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 500
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.26 E-value=0.00021 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999998753
Done!