Query psy871
Match_columns 249
No_of_seqs 150 out of 1784
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 17:17:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6b_A SAR1; gtpases, N-termin 100.0 2.6E-32 8.9E-37 205.4 18.9 194 1-249 1-198 (198)
2 4dkx_A RAS-related protein RAB 100.0 1.2E-31 4.2E-36 203.4 16.7 165 15-248 7-174 (216)
3 1m2o_B GTP-binding protein SAR 100.0 9.9E-31 3.4E-35 195.5 19.2 185 4-248 6-190 (190)
4 1zj6_A ADP-ribosylation factor 100.0 2.3E-29 8E-34 187.5 18.6 165 17-248 12-176 (187)
5 1r8s_A ADP-ribosylation factor 100.0 6.9E-29 2.4E-33 180.9 19.3 160 22-248 1-160 (164)
6 1fzq_A ADP-ribosylation factor 100.0 2.8E-29 9.7E-34 186.1 16.9 164 18-248 13-176 (181)
7 2b6h_A ADP-ribosylation factor 100.0 2E-29 6.8E-34 188.7 16.0 164 18-248 26-189 (192)
8 2x77_A ADP-ribosylation factor 100.0 1.3E-29 4.3E-34 189.3 14.8 163 19-248 20-182 (189)
9 1upt_A ARL1, ADP-ribosylation 100.0 9.5E-29 3.2E-33 181.3 19.1 163 19-248 5-167 (171)
10 1ksh_A ARF-like protein 2; sma 100.0 1E-28 3.5E-33 183.8 19.0 163 19-248 16-178 (186)
11 2h17_A ADP-ribosylation factor 100.0 5.8E-29 2E-33 184.4 17.4 166 16-248 16-181 (181)
12 1zd9_A ADP-ribosylation factor 100.0 1.5E-28 5.1E-33 183.3 19.0 166 16-248 17-183 (188)
13 1moz_A ARL1, ADP-ribosylation 100.0 5.6E-29 1.9E-33 184.7 16.6 163 19-248 16-178 (183)
14 3q72_A GTP-binding protein RAD 100.0 1.1E-28 3.8E-33 180.1 16.7 159 21-248 2-162 (166)
15 2h57_A ADP-ribosylation factor 100.0 3.6E-28 1.2E-32 181.5 19.1 165 17-248 17-185 (190)
16 1c1y_A RAS-related protein RAP 100.0 1.4E-28 4.6E-33 179.8 16.4 162 19-248 1-165 (167)
17 4bas_A ADP-ribosylation factor 100.0 1.5E-28 5.1E-33 184.8 16.1 165 18-248 14-187 (199)
18 1u8z_A RAS-related protein RAL 100.0 3.6E-28 1.2E-32 177.5 16.2 161 19-248 2-165 (168)
19 3kkq_A RAS-related protein M-R 100.0 6E-28 2.1E-32 179.1 17.4 162 18-248 15-180 (183)
20 2nzj_A GTP-binding protein REM 100.0 6E-28 2E-32 177.7 17.3 162 19-248 2-167 (175)
21 3t5g_A GTP-binding protein RHE 100.0 4.4E-28 1.5E-32 179.5 16.5 161 19-248 4-167 (181)
22 1kao_A RAP2A; GTP-binding prot 100.0 3.1E-28 1.1E-32 177.7 15.4 161 19-248 1-164 (167)
23 1r2q_A RAS-related protein RAB 100.0 7.3E-28 2.5E-32 176.3 17.3 164 16-248 1-167 (170)
24 4dsu_A GTPase KRAS, isoform 2B 100.0 1.2E-27 4.1E-32 178.2 17.3 161 19-248 2-164 (189)
25 1z08_A RAS-related protein RAB 100.0 1.4E-27 4.8E-32 174.9 16.2 163 17-248 2-167 (170)
26 3oes_A GTPase rhebl1; small GT 100.0 7.3E-28 2.5E-32 181.5 15.0 161 19-248 22-185 (201)
27 2fn4_A P23, RAS-related protei 100.0 1.4E-27 4.7E-32 176.7 16.1 162 18-248 6-170 (181)
28 1z0j_A RAB-22, RAS-related pro 100.0 3.3E-27 1.1E-31 172.8 17.8 163 17-248 2-167 (170)
29 2a9k_A RAS-related protein RAL 100.0 1.7E-27 5.9E-32 177.1 16.3 162 18-248 15-179 (187)
30 2efe_B Small GTP-binding prote 100.0 5.3E-27 1.8E-31 173.6 18.9 164 16-248 7-173 (181)
31 1ek0_A Protein (GTP-binding pr 100.0 3.1E-27 1.1E-31 172.9 17.3 161 19-248 1-167 (170)
32 1z06_A RAS-related protein RAB 100.0 3E-27 1E-31 176.3 17.4 167 14-248 13-186 (189)
33 3bc1_A RAS-related protein RAB 100.0 3E-27 1E-31 176.8 17.4 172 19-248 9-183 (195)
34 2g6b_A RAS-related protein RAB 100.0 4.5E-27 1.5E-31 173.8 17.9 164 16-248 5-172 (180)
35 1x3s_A RAS-related protein RAB 100.0 3.2E-27 1.1E-31 176.8 17.2 162 19-248 13-176 (195)
36 2bov_A RAla, RAS-related prote 100.0 3.3E-27 1.1E-31 178.3 17.3 161 19-248 12-175 (206)
37 2fg5_A RAB-22B, RAS-related pr 100.0 4.3E-27 1.5E-31 176.0 17.6 162 18-248 20-184 (192)
38 2ce2_X GTPase HRAS; signaling 100.0 4.5E-27 1.5E-31 171.2 17.2 161 19-248 1-163 (166)
39 2hup_A RAS-related protein RAB 100.0 3.1E-27 1.1E-31 178.0 16.7 161 19-248 27-191 (201)
40 3reg_A RHO-like small GTPase; 100.0 2.6E-27 8.8E-32 177.4 16.0 162 16-248 18-186 (194)
41 3t1o_A Gliding protein MGLA; G 100.0 3.3E-27 1.1E-31 177.1 16.5 171 19-248 12-190 (198)
42 3ihw_A Centg3; RAS, centaurin, 100.0 3.5E-27 1.2E-31 175.3 16.4 158 17-248 16-178 (184)
43 1z2a_A RAS-related protein RAB 100.0 2.9E-27 1E-31 172.8 15.6 160 19-248 3-165 (168)
44 2ew1_A RAS-related protein RAB 100.0 5.6E-27 1.9E-31 176.5 17.1 161 19-248 24-187 (201)
45 2iwr_A Centaurin gamma 1; ANK 100.0 9.4E-27 3.2E-31 171.9 17.9 157 19-248 5-167 (178)
46 3q85_A GTP-binding protein REM 100.0 3.9E-27 1.3E-31 172.4 15.6 160 21-248 2-165 (169)
47 2y8e_A RAB-protein 6, GH09086P 100.0 4.9E-27 1.7E-31 173.4 16.1 164 16-248 9-175 (179)
48 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-26 4.4E-31 170.9 18.4 164 18-248 4-172 (177)
49 3o47_A ADP-ribosylation factor 100.0 1.7E-27 5.8E-32 192.0 14.7 163 19-248 163-325 (329)
50 1z0f_A RAB14, member RAS oncog 100.0 9.8E-27 3.3E-31 171.8 17.5 161 19-248 13-176 (179)
51 3lvq_E ARF-GAP with SH3 domain 100.0 7.9E-27 2.7E-31 198.6 19.3 167 16-249 317-483 (497)
52 2a5j_A RAS-related protein RAB 99.9 5.6E-27 1.9E-31 175.2 16.2 163 17-248 17-182 (191)
53 3con_A GTPase NRAS; structural 99.9 1E-26 3.6E-31 173.5 17.6 162 18-248 18-181 (190)
54 2erx_A GTP-binding protein DI- 99.9 7.5E-27 2.6E-31 171.2 16.3 160 20-248 2-165 (172)
55 3q3j_B RHO-related GTP-binding 99.9 3.8E-27 1.3E-31 179.3 15.1 160 18-248 24-201 (214)
56 3cbq_A GTP-binding protein REM 99.9 7.6E-27 2.6E-31 175.0 16.5 162 19-248 21-186 (195)
57 2gf9_A RAS-related protein RAB 99.9 1.2E-26 4.1E-31 173.1 17.3 161 19-248 20-183 (189)
58 1g16_A RAS-related protein SEC 99.9 8.1E-27 2.8E-31 170.8 16.0 160 20-248 2-163 (170)
59 3tkl_A RAS-related protein RAB 99.9 1.4E-26 4.6E-31 173.6 17.5 161 19-248 14-177 (196)
60 3tw8_B RAS-related protein RAB 99.9 8.7E-27 3E-31 172.3 16.3 160 19-248 7-169 (181)
61 2atx_A Small GTP binding prote 99.9 1.5E-26 5.2E-31 173.2 17.8 160 19-248 16-191 (194)
62 1zbd_A Rabphilin-3A; G protein 99.9 2E-26 6.7E-31 173.8 18.3 161 19-248 6-169 (203)
63 2atv_A RERG, RAS-like estrogen 99.9 7.1E-27 2.4E-31 175.3 15.8 160 19-248 26-189 (196)
64 2gco_A H9, RHO-related GTP-bin 99.9 1.4E-26 4.8E-31 174.4 17.4 164 15-248 19-198 (201)
65 2bcg_Y Protein YP2, GTP-bindin 99.9 1.7E-26 5.9E-31 174.5 17.7 161 19-248 6-169 (206)
66 2bme_A RAB4A, RAS-related prot 99.9 1.4E-26 4.8E-31 172.1 16.9 161 19-248 8-171 (186)
67 1mh1_A RAC1; GTP-binding, GTPa 99.9 9.5E-27 3.3E-31 172.9 15.5 161 18-248 2-178 (186)
68 3c5c_A RAS-like protein 12; GD 99.9 6.1E-27 2.1E-31 174.4 14.4 161 18-248 18-184 (187)
69 3clv_A RAB5 protein, putative; 99.9 2.9E-26 1E-30 172.9 18.3 195 19-248 5-202 (208)
70 2hxs_A RAB-26, RAS-related pro 99.9 4.5E-27 1.5E-31 173.5 13.5 164 17-248 2-171 (178)
71 2p5s_A RAS and EF-hand domain 99.9 1E-26 3.4E-31 174.9 15.4 161 19-248 26-195 (199)
72 2fu5_C RAS-related protein RAB 99.9 2.7E-27 9.2E-32 175.6 12.1 161 19-248 6-169 (183)
73 2g3y_A GTP-binding protein GEM 99.9 3.1E-26 1.1E-30 173.3 18.1 162 19-248 35-201 (211)
74 2oil_A CATX-8, RAS-related pro 99.9 1.5E-26 5.3E-31 173.0 16.1 162 18-248 22-186 (193)
75 1ky3_A GTP-binding protein YPT 99.9 2.9E-26 9.9E-31 169.7 17.4 163 19-248 6-176 (182)
76 3dz8_A RAS-related protein RAB 99.9 4.3E-27 1.5E-31 175.8 13.0 162 18-248 20-184 (191)
77 4gzl_A RAS-related C3 botulinu 99.9 7.6E-27 2.6E-31 176.3 14.4 168 11-248 20-203 (204)
78 2gf0_A GTP-binding protein DI- 99.9 1.9E-26 6.7E-31 173.2 16.6 161 19-248 6-169 (199)
79 2il1_A RAB12; G-protein, GDP, 99.9 1.6E-26 5.6E-31 172.8 15.5 162 19-248 24-188 (192)
80 2o52_A RAS-related protein RAB 99.9 1.1E-26 3.8E-31 174.9 14.5 162 18-248 22-186 (200)
81 1vg8_A RAS-related protein RAB 99.9 2.6E-26 8.9E-31 173.6 16.6 163 19-248 6-173 (207)
82 2fv8_A H6, RHO-related GTP-bin 99.9 2.9E-26 9.8E-31 173.5 16.3 164 15-248 19-198 (207)
83 3bwd_D RAC-like GTP-binding pr 99.9 1.1E-26 3.6E-31 172.1 13.4 160 19-248 6-179 (182)
84 2yc2_C IFT27, small RAB-relate 99.9 1.3E-26 4.6E-31 175.2 14.1 162 19-248 18-190 (208)
85 2q3h_A RAS homolog gene family 99.9 2.7E-26 9.4E-31 172.8 15.6 161 18-248 17-193 (201)
86 2f7s_A C25KG, RAS-related prot 99.9 6.3E-27 2.2E-31 178.3 12.1 174 17-248 21-197 (217)
87 1m7b_A RND3/RHOE small GTP-bin 99.9 2.4E-26 8.1E-31 170.8 14.8 161 18-248 4-181 (184)
88 2j1l_A RHO-related GTP-binding 99.9 3E-26 1E-30 174.3 15.0 160 19-248 32-207 (214)
89 3cpj_B GTP-binding protein YPT 99.9 3.3E-26 1.1E-30 175.2 15.1 161 19-248 11-174 (223)
90 3cph_A RAS-related protein SEC 99.9 7.3E-26 2.5E-30 171.9 16.7 161 19-248 18-180 (213)
91 2j0v_A RAC-like GTP-binding pr 99.9 2.5E-26 8.5E-31 174.4 13.8 160 19-248 7-178 (212)
92 2fh5_B SR-beta, signal recogni 99.9 2.3E-25 7.9E-30 169.3 18.1 178 18-248 4-214 (214)
93 2cjw_A GTP-binding protein GEM 99.9 1.4E-25 4.9E-30 167.7 16.2 163 18-248 3-170 (192)
94 1gwn_A RHO-related GTP-binding 99.9 7.4E-26 2.5E-30 170.9 14.6 160 19-248 26-202 (205)
95 4djt_A GTP-binding nuclear pro 99.9 4.6E-26 1.6E-30 173.7 13.4 162 19-248 9-173 (218)
96 3gj0_A GTP-binding nuclear pro 99.9 1E-26 3.5E-31 177.8 9.7 162 17-248 11-173 (221)
97 2lkc_A Translation initiation 99.9 1.3E-24 4.3E-29 160.4 14.2 165 17-248 4-169 (178)
98 3llu_A RAS-related GTP-binding 99.9 8.9E-25 3E-29 163.9 13.5 164 18-248 17-195 (196)
99 3l0i_B RAS-related protein RAB 99.9 7.5E-27 2.6E-31 175.6 1.8 161 19-248 31-194 (199)
100 4dcu_A GTP-binding protein ENG 99.9 6E-25 2.1E-29 184.7 12.1 160 67-248 196-367 (456)
101 3th5_A RAS-related C3 botulinu 99.9 7.4E-27 2.5E-31 176.3 0.0 162 17-248 26-203 (204)
102 2wji_A Ferrous iron transport 99.9 1.2E-24 4.1E-29 158.7 11.7 157 19-248 1-163 (165)
103 2hjg_A GTP-binding protein ENG 99.9 7.3E-25 2.5E-29 183.2 12.0 165 67-248 176-347 (436)
104 3pqc_A Probable GTP-binding pr 99.9 2.8E-24 9.5E-29 160.8 13.8 163 19-249 21-193 (195)
105 2gj8_A MNME, tRNA modification 99.9 1.2E-24 4E-29 159.9 11.3 161 19-248 2-164 (172)
106 1svi_A GTP-binding protein YSX 99.9 4.4E-24 1.5E-28 159.8 13.0 161 20-249 22-194 (195)
107 3iev_A GTP-binding protein ERA 99.9 1.2E-23 4E-28 168.1 15.2 168 17-248 6-180 (308)
108 2dyk_A GTP-binding protein; GT 99.9 3.8E-24 1.3E-28 155.2 10.9 159 22-249 2-161 (161)
109 2wkq_A NPH1-1, RAS-related C3 99.9 1.2E-23 4E-28 170.2 14.3 160 19-248 153-328 (332)
110 2zej_A Dardarin, leucine-rich 99.9 3.8E-24 1.3E-28 158.8 10.5 168 21-248 2-176 (184)
111 2f9l_A RAB11B, member RAS onco 99.9 9.7E-23 3.3E-27 153.1 16.8 161 19-248 3-166 (199)
112 1wf3_A GTP-binding protein; GT 99.9 4.6E-23 1.6E-27 163.9 14.5 165 19-248 5-171 (301)
113 3i8s_A Ferrous iron transport 99.9 4.8E-24 1.7E-28 167.7 8.6 160 19-248 1-167 (274)
114 4dhe_A Probable GTP-binding pr 99.9 6.6E-23 2.3E-27 156.7 14.7 171 19-248 27-209 (223)
115 3c5h_A Glucocorticoid receptor 99.9 4.9E-24 1.7E-28 166.1 7.8 90 143-248 162-253 (255)
116 2qu8_A Putative nucleolar GTP- 99.9 1.4E-22 4.8E-27 155.5 15.1 167 19-248 27-203 (228)
117 2wjg_A FEOB, ferrous iron tran 99.9 1.9E-23 6.4E-28 155.5 9.7 161 16-248 2-167 (188)
118 3a1s_A Iron(II) transport prot 99.9 2.2E-23 7.6E-28 162.4 10.1 158 18-247 2-164 (258)
119 2cxx_A Probable GTP-binding pr 99.9 5.1E-23 1.8E-27 153.3 10.6 159 22-248 2-182 (190)
120 3iby_A Ferrous iron transport 99.9 2.3E-23 7.8E-28 162.1 8.7 154 22-247 2-164 (256)
121 1lnz_A SPO0B-associated GTP-bi 99.9 4.5E-23 1.6E-27 166.1 10.2 163 22-249 159-329 (342)
122 3gee_A MNME, tRNA modification 99.9 1.3E-22 4.5E-27 170.1 12.5 164 19-248 231-396 (476)
123 3dpu_A RAB family protein; roc 99.9 2.8E-22 9.4E-27 171.8 14.7 166 18-248 38-206 (535)
124 3b1v_A Ferrous iron uptake tra 99.9 7.2E-23 2.4E-27 160.4 10.1 156 20-248 2-162 (272)
125 1oix_A RAS-related protein RAB 99.9 8.1E-22 2.8E-26 147.1 15.1 160 20-248 28-190 (191)
126 3r7w_A Gtpase1, GTP-binding pr 99.9 3.2E-22 1.1E-26 159.9 13.4 157 20-247 2-178 (307)
127 1xzp_A Probable tRNA modificat 99.9 1.9E-22 6.6E-27 169.2 11.6 159 20-248 242-403 (482)
128 3r7w_B Gtpase2, GTP-binding pr 99.9 2.3E-22 7.8E-27 159.4 10.7 158 23-248 1-172 (331)
129 3sjy_A Translation initiation 99.9 1.1E-21 3.8E-26 162.4 15.0 116 114-248 75-190 (403)
130 3k53_A Ferrous iron transport 99.9 1.7E-22 5.8E-27 158.9 8.6 160 19-248 1-164 (271)
131 1ega_A Protein (GTP-binding pr 99.9 1.9E-21 6.7E-26 154.7 13.3 165 19-248 6-173 (301)
132 2e87_A Hypothetical protein PH 99.9 4.2E-21 1.4E-25 156.5 15.0 162 19-248 165-334 (357)
133 1nrj_B SR-beta, signal recogni 99.9 6.8E-22 2.3E-26 150.5 9.5 126 19-196 10-139 (218)
134 3j2k_7 ERF3, eukaryotic polype 99.9 9.2E-22 3.2E-26 164.2 10.9 187 19-242 15-217 (439)
135 1mky_A Probable GTP-binding pr 99.9 2.2E-21 7.5E-26 162.3 12.0 159 22-248 2-164 (439)
136 3izy_P Translation initiation 99.9 3.5E-22 1.2E-26 169.0 6.2 161 19-248 2-166 (537)
137 3p26_A Elongation factor 1 alp 99.9 5.8E-22 2E-26 167.6 7.0 188 13-239 25-227 (483)
138 3geh_A MNME, tRNA modification 99.8 2E-21 6.9E-26 162.4 9.5 159 19-248 222-382 (462)
139 3qq5_A Small GTP-binding prote 99.8 6.1E-22 2.1E-26 163.5 6.0 162 19-248 32-194 (423)
140 1wb1_A Translation elongation 99.8 1.2E-20 4E-25 159.1 12.4 165 18-248 16-187 (482)
141 1s0u_A EIF-2-gamma, translatio 99.8 1.6E-19 5.6E-24 149.6 18.0 112 114-248 81-196 (408)
142 2qtf_A Protein HFLX, GTP-bindi 99.8 1.9E-19 6.3E-24 146.5 17.9 162 22-248 179-352 (364)
143 3tr5_A RF-3, peptide chain rel 99.8 2.4E-20 8.1E-25 158.4 12.0 79 111-200 79-157 (528)
144 2c78_A Elongation factor TU-A; 99.8 2.3E-20 7.8E-25 154.7 10.9 180 17-248 7-210 (405)
145 3izq_1 HBS1P, elongation facto 99.8 1.8E-21 6E-26 168.1 4.2 193 11-240 157-362 (611)
146 1g7s_A Translation initiation 99.8 4.7E-20 1.6E-24 158.4 12.8 185 18-247 2-215 (594)
147 2aka_B Dynamin-1; fusion prote 99.8 7.7E-20 2.6E-24 145.7 13.2 226 4-246 7-249 (299)
148 1d2e_A Elongation factor TU (E 99.8 3.2E-20 1.1E-24 153.3 10.7 116 110-248 62-193 (397)
149 1zo1_I IF2, translation initia 99.8 2.5E-20 8.6E-25 156.5 10.2 162 19-247 2-164 (501)
150 1mky_A Probable GTP-binding pr 99.8 3.8E-20 1.3E-24 154.8 11.2 166 20-248 179-353 (439)
151 1kk1_A EIF2gamma; initiation o 99.8 1.8E-19 6E-24 149.6 14.8 112 114-248 83-198 (410)
152 2xtp_A GTPase IMAP family memb 99.8 6.2E-20 2.1E-24 143.4 11.3 169 19-248 20-206 (260)
153 2ywe_A GTP-binding protein LEP 99.8 1.6E-19 5.3E-24 154.8 14.6 111 112-248 71-182 (600)
154 3cb4_D GTP-binding protein LEP 99.8 9.7E-20 3.3E-24 156.3 13.1 112 112-248 69-180 (599)
155 3mca_A HBS1, elongation factor 99.8 4.7E-22 1.6E-26 171.2 -1.3 192 19-247 175-394 (592)
156 1zun_B Sulfate adenylate trans 99.8 7.4E-19 2.5E-23 146.8 15.9 186 19-240 22-214 (434)
157 2ged_A SR-beta, signal recogni 99.8 9E-20 3.1E-24 136.1 9.3 133 19-203 46-182 (193)
158 1jny_A EF-1-alpha, elongation 99.8 1.7E-20 5.8E-25 156.6 5.8 113 109-240 79-203 (435)
159 2elf_A Protein translation elo 99.8 2.2E-19 7.6E-24 146.4 11.7 113 113-248 59-178 (370)
160 1r5b_A Eukaryotic peptide chai 99.8 4.5E-20 1.5E-24 155.2 5.7 108 112-241 119-243 (467)
161 3lxw_A GTPase IMAP family memb 99.8 2.2E-18 7.4E-23 133.5 13.9 167 19-248 19-206 (247)
162 3avx_A Elongation factor TS, e 99.8 8.4E-19 2.9E-23 157.5 12.8 117 109-248 354-484 (1289)
163 3lxx_A GTPase IMAP family memb 99.8 1.7E-18 6E-23 133.5 12.7 166 19-248 27-212 (239)
164 1f60_A Elongation factor EEF1A 99.8 6E-19 2.1E-23 148.0 10.4 110 109-240 80-202 (458)
165 3t5d_A Septin-7; GTP-binding p 99.8 6.2E-19 2.1E-23 138.7 9.9 169 21-248 8-202 (274)
166 1jwy_B Dynamin A GTPase domain 99.8 1.9E-18 6.4E-23 138.7 12.8 230 3-248 5-260 (315)
167 2j69_A Bacterial dynamin-like 99.8 1.2E-17 4.3E-22 146.4 16.6 212 18-248 66-323 (695)
168 1udx_A The GTP-binding protein 99.8 2.3E-18 7.9E-23 141.8 11.2 161 22-248 158-323 (416)
169 1pui_A ENGB, probable GTP-bind 99.8 6.7E-18 2.3E-22 127.6 12.1 161 20-248 25-197 (210)
170 2h5e_A Peptide chain release f 99.8 2.2E-17 7.7E-22 140.3 15.9 73 111-194 79-151 (529)
171 2hjg_A GTP-binding protein ENG 99.7 2.7E-18 9.2E-23 143.5 9.0 158 67-248 4-163 (436)
172 1wxq_A GTP-binding protein; st 99.7 1.3E-18 4.6E-23 142.9 5.3 109 22-156 1-114 (397)
173 2x2e_A Dynamin-1; nitration, h 99.7 3.6E-17 1.2E-21 133.1 13.1 221 4-246 12-254 (353)
174 1dar_A EF-G, elongation factor 99.7 8.2E-17 2.8E-21 141.2 15.6 69 113-192 76-144 (691)
175 3ohm_A Guanine nucleotide-bind 99.7 3.5E-17 1.2E-21 130.5 12.1 127 109-248 162-316 (327)
176 3p32_A Probable GTPase RV1496/ 99.7 7E-18 2.4E-22 137.3 8.2 109 112-248 170-282 (355)
177 2xtz_A Guanine nucleotide-bind 99.7 2E-17 6.8E-22 133.7 9.9 129 112-248 181-343 (354)
178 3t34_A Dynamin-related protein 99.7 3.9E-17 1.3E-21 133.3 10.6 222 4-243 7-254 (360)
179 2qag_A Septin-2, protein NEDD5 99.7 8.6E-18 3E-22 136.8 5.9 115 114-247 95-230 (361)
180 4fid_A G protein alpha subunit 99.7 1E-16 3.5E-21 128.2 11.6 134 109-248 156-326 (340)
181 2xex_A Elongation factor G; GT 99.7 1.7E-16 5.9E-21 139.1 13.9 69 113-192 74-142 (693)
182 2dy1_A Elongation factor G; tr 99.7 2.8E-16 9.5E-21 137.3 14.7 68 112-190 72-139 (665)
183 2www_A Methylmalonic aciduria 99.7 1.6E-17 5.4E-22 134.7 6.2 109 112-248 165-277 (349)
184 4dcu_A GTP-binding protein ENG 99.7 7.1E-17 2.4E-21 135.7 10.1 160 65-248 22-183 (456)
185 3zvr_A Dynamin-1; hydrolase, D 99.7 5.4E-16 1.8E-20 135.5 15.1 219 4-246 32-274 (772)
186 3def_A T7I23.11 protein; chlor 99.7 2.9E-16 1E-20 122.6 12.2 127 19-191 34-165 (262)
187 2rdo_7 EF-G, elongation factor 99.7 6.7E-16 2.3E-20 135.6 15.5 69 113-192 81-149 (704)
188 1yrb_A ATP(GTP)binding protein 99.7 2.1E-16 7.1E-21 123.5 9.7 133 114-248 109-255 (262)
189 2wsm_A Hydrogenase expression/ 99.7 1.3E-16 4.6E-21 121.4 8.3 103 113-248 108-212 (221)
190 1h65_A Chloroplast outer envel 99.7 8E-16 2.7E-20 120.7 12.2 127 19-191 37-168 (270)
191 1jal_A YCHF protein; nucleotid 99.7 4.7E-15 1.6E-19 119.6 15.9 101 22-155 3-108 (363)
192 2qnr_A Septin-2, protein NEDD5 99.6 5.3E-16 1.8E-20 123.3 9.3 55 176-248 154-212 (301)
193 3vqt_A RF-3, peptide chain rel 99.6 2E-15 7E-20 128.8 13.1 73 111-194 97-169 (548)
194 2p67_A LAO/AO transport system 99.6 3.2E-16 1.1E-20 126.8 7.6 108 113-248 148-259 (341)
195 4a9a_A Ribosome-interacting GT 99.6 8.9E-15 3E-19 118.7 13.7 133 22-205 73-220 (376)
196 1cip_A Protein (guanine nucleo 99.6 5E-15 1.7E-19 119.7 9.9 125 112-248 191-342 (353)
197 3j25_A Tetracycline resistance 99.6 4.5E-15 1.6E-19 129.1 9.7 127 111-248 64-237 (638)
198 2dby_A GTP-binding protein; GD 99.6 9.2E-15 3.1E-19 118.6 10.4 106 22-155 2-111 (368)
199 2hf9_A Probable hydrogenase ni 99.6 1.3E-14 4.3E-19 110.8 10.2 102 114-248 119-222 (226)
200 2qpt_A EH domain-containing pr 99.5 9.9E-15 3.4E-19 124.8 8.6 74 115-192 155-233 (550)
201 2qm8_A GTPase/ATPase; G protei 99.5 3.3E-15 1.1E-19 120.4 5.3 109 112-248 146-259 (337)
202 3l82_B F-box only protein 4; T 99.5 2.7E-14 9.2E-19 105.0 9.2 106 123-248 111-221 (227)
203 4fn5_A EF-G 1, elongation fact 99.5 3.4E-14 1.2E-18 125.2 11.5 70 112-192 83-152 (709)
204 2qag_C Septin-7; cell cycle, c 99.5 3.7E-14 1.3E-18 116.9 10.5 55 176-247 166-224 (418)
205 1n0u_A EF-2, elongation factor 99.5 2E-14 6.7E-19 128.6 8.3 69 112-191 96-164 (842)
206 1zcb_A G alpha I/13; GTP-bindi 99.5 3.3E-14 1.1E-18 115.3 8.8 125 112-248 199-351 (362)
207 1u0l_A Probable GTPase ENGC; p 99.5 6.5E-14 2.2E-18 111.3 7.0 105 115-246 64-169 (301)
208 1azs_C GS-alpha; complex (lyas 99.5 1.1E-13 3.9E-18 113.0 8.3 125 113-248 216-383 (402)
209 3l2o_B F-box only protein 4; s 99.4 4.8E-13 1.6E-17 103.2 7.9 107 122-248 195-306 (312)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1E-10 3.4E-15 95.6 14.3 47 14-60 13-63 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 4.5E-12 1.5E-16 103.3 5.6 111 13-156 14-129 (396)
212 2yv5_A YJEQ protein; hydrolase 99.2 1.6E-11 5.5E-16 97.5 6.1 97 124-247 66-166 (302)
213 2j37_W Signal recognition part 99.1 1.7E-10 5.9E-15 97.1 9.1 120 113-247 183-310 (504)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 1.7E-11 5.9E-16 99.9 -2.4 80 116-200 214-297 (369)
215 3dm5_A SRP54, signal recogniti 99.0 3.8E-09 1.3E-13 87.3 11.3 98 113-239 182-280 (443)
216 3h2y_A GTPase family protein; 99.0 2.1E-11 7.2E-16 99.4 -2.5 84 116-204 213-300 (368)
217 1tq4_A IIGP1, interferon-induc 99.0 1.1E-08 3.8E-13 84.1 13.6 117 115-248 121-251 (413)
218 2qag_B Septin-6, protein NEDD5 98.9 1.9E-09 6.5E-14 88.6 8.0 24 22-45 43-66 (427)
219 3sop_A Neuronal-specific septi 98.9 1.9E-09 6.6E-14 84.1 7.6 25 21-45 2-26 (270)
220 2v3c_C SRP54, signal recogniti 98.9 4.3E-09 1.5E-13 87.3 8.7 123 113-247 180-308 (432)
221 1puj_A YLQF, conserved hypothe 98.9 2.9E-09 9.8E-14 83.6 6.5 99 120-247 5-103 (282)
222 3kl4_A SRP54, signal recogniti 98.8 1.1E-08 3.8E-13 84.5 8.9 174 19-238 95-278 (433)
223 3h2y_A GTPase family protein; 98.8 1.3E-08 4.3E-13 83.0 8.3 101 124-247 56-157 (368)
224 3ec1_A YQEH GTPase; atnos1, at 98.7 2.5E-08 8.5E-13 81.3 7.7 101 124-247 58-159 (369)
225 1j8m_F SRP54, signal recogniti 98.7 1E-07 3.5E-12 75.3 10.4 172 20-239 97-280 (297)
226 3cnl_A YLQF, putative uncharac 98.6 1E-08 3.6E-13 79.5 2.2 85 136-247 14-98 (262)
227 3e70_C DPA, signal recognition 98.5 1.5E-07 5E-12 75.3 6.1 174 20-239 128-309 (328)
228 1puj_A YLQF, conserved hypothe 98.4 1.6E-07 5.6E-12 73.6 4.2 28 18-45 117-144 (282)
229 1t9h_A YLOQ, probable GTPase E 98.4 1.8E-07 6.1E-12 74.0 4.2 85 140-244 83-171 (307)
230 1f5n_A Interferon-induced guan 98.4 4.1E-07 1.4E-11 78.0 6.5 28 18-45 35-62 (592)
231 3szr_A Interferon-induced GTP- 98.3 1.7E-06 5.7E-11 75.1 9.3 26 20-45 44-69 (608)
232 2yhs_A FTSY, cell division pro 98.3 1.5E-06 5.3E-11 72.6 8.7 24 20-43 292-315 (503)
233 2px0_A Flagellar biosynthesis 98.3 1.1E-05 3.8E-10 63.6 11.7 25 19-43 103-127 (296)
234 3cnl_A YLQF, putative uncharac 98.3 3.6E-07 1.2E-11 70.8 2.9 25 22-46 100-124 (262)
235 2rcn_A Probable GTPase ENGC; Y 98.1 5.4E-06 1.8E-10 66.8 6.9 87 141-245 128-214 (358)
236 1zu4_A FTSY; GTPase, signal re 98.1 2.4E-05 8.2E-10 62.3 10.5 24 20-43 104-127 (320)
237 1ls1_A Signal recognition part 98.1 1.1E-05 3.6E-10 63.7 7.8 160 20-206 97-264 (295)
238 2xxa_A Signal recognition part 98.1 1.6E-05 5.4E-10 66.0 9.2 71 113-192 183-255 (433)
239 1vma_A Cell division protein F 98.1 2.8E-05 9.7E-10 61.5 10.2 24 20-43 103-126 (306)
240 2ffh_A Protein (FFH); SRP54, s 98.1 7.9E-06 2.7E-10 67.4 7.1 147 20-191 97-251 (425)
241 1rj9_A FTSY, signal recognitio 98.0 2.4E-05 8.2E-10 61.9 9.0 24 20-43 101-124 (304)
242 1nij_A Hypothetical protein YJ 97.9 0.00032 1.1E-08 55.8 13.2 25 21-45 4-28 (318)
243 3q5d_A Atlastin-1; G protein, 97.8 1.9E-05 6.6E-10 65.5 5.3 27 18-44 64-90 (447)
244 3c8u_A Fructokinase; YP_612366 97.8 1.2E-05 4.3E-10 59.9 3.8 39 4-44 7-45 (208)
245 1ye8_A Protein THEP1, hypothet 97.8 1.3E-05 4.3E-10 58.4 2.9 23 23-45 2-24 (178)
246 1kgd_A CASK, peripheral plasma 97.7 1.5E-05 5.2E-10 58.0 3.0 25 20-44 4-28 (180)
247 1ex7_A Guanylate kinase; subst 97.7 1.5E-05 5.2E-10 58.2 2.7 61 24-93 4-69 (186)
248 1lvg_A Guanylate kinase, GMP k 97.7 1.6E-05 5.5E-10 58.9 2.7 24 21-44 4-27 (198)
249 3ney_A 55 kDa erythrocyte memb 97.6 3.3E-05 1.1E-09 56.9 3.0 25 20-44 18-42 (197)
250 3a00_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 56.7 2.8 23 23-45 3-25 (186)
251 3tr0_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 57.1 3.0 23 22-44 8-30 (205)
252 4dzz_A Plasmid partitioning pr 97.6 0.00027 9.2E-09 52.3 7.7 79 114-204 76-156 (206)
253 1s96_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 58.1 2.7 24 22-45 17-40 (219)
254 1zp6_A Hypothetical protein AT 97.6 3.8E-05 1.3E-09 56.3 3.0 23 22-44 10-32 (191)
255 1znw_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 57.5 2.7 23 23-45 22-44 (207)
256 1z6g_A Guanylate kinase; struc 97.5 3.7E-05 1.3E-09 57.8 2.7 23 22-44 24-46 (218)
257 2bbw_A Adenylate kinase 4, AK4 97.5 5.1E-05 1.7E-09 58.1 3.1 24 19-42 25-48 (246)
258 1bif_A 6-phosphofructo-2-kinas 97.5 2.7E-05 9.3E-10 65.5 1.7 27 18-44 36-62 (469)
259 3tif_A Uncharacterized ABC tra 97.5 4.9E-05 1.7E-09 57.8 2.9 30 15-44 24-54 (235)
260 3tau_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 56.5 3.0 26 20-45 7-32 (208)
261 4gp7_A Metallophosphoesterase; 97.5 4.4E-05 1.5E-09 55.1 2.4 20 23-42 11-30 (171)
262 3ec2_A DNA replication protein 97.5 8.9E-05 3E-09 53.8 4.1 39 5-44 23-61 (180)
263 1htw_A HI0065; nucleotide-bind 97.5 5.6E-05 1.9E-09 53.8 2.8 23 23-45 35-57 (158)
264 2pcj_A ABC transporter, lipopr 97.5 5.6E-05 1.9E-09 57.1 2.9 30 15-44 23-53 (224)
265 2j41_A Guanylate kinase; GMP, 97.5 5.9E-05 2E-09 55.9 3.0 25 21-45 6-30 (207)
266 3asz_A Uridine kinase; cytidin 97.4 5.8E-05 2E-09 56.3 2.8 24 21-44 6-29 (211)
267 1kag_A SKI, shikimate kinase I 97.4 5.8E-05 2E-09 54.4 2.7 22 22-43 5-26 (173)
268 2onk_A Molybdate/tungstate ABC 97.4 6.7E-05 2.3E-09 57.3 3.0 23 22-44 25-47 (240)
269 3aez_A Pantothenate kinase; tr 97.4 6.5E-05 2.2E-09 59.6 2.8 25 19-43 88-112 (312)
270 2cbz_A Multidrug resistance-as 97.4 7.2E-05 2.5E-09 57.0 2.9 22 23-44 33-54 (237)
271 1sgw_A Putative ABC transporte 97.4 6.9E-05 2.4E-09 56.1 2.7 22 23-44 37-58 (214)
272 2rcn_A Probable GTPase ENGC; Y 97.4 7.4E-05 2.5E-09 60.2 3.0 25 21-45 215-239 (358)
273 1mv5_A LMRA, multidrug resista 97.4 7.8E-05 2.7E-09 57.0 2.9 23 23-45 30-52 (243)
274 3gfo_A Cobalt import ATP-bindi 97.4 7.8E-05 2.7E-09 58.1 2.9 32 13-44 25-57 (275)
275 1kht_A Adenylate kinase; phosp 97.4 8.8E-05 3E-09 54.2 3.1 24 20-43 2-25 (192)
276 4eun_A Thermoresistant glucoki 97.4 8.3E-05 2.8E-09 55.0 3.0 23 21-43 29-51 (200)
277 2ff7_A Alpha-hemolysin translo 97.4 8.2E-05 2.8E-09 57.0 2.9 22 23-44 37-58 (247)
278 1t9h_A YLOQ, probable GTPase E 97.4 3.9E-05 1.3E-09 60.6 1.1 24 21-44 173-196 (307)
279 4g1u_C Hemin import ATP-bindin 97.4 8.3E-05 2.8E-09 57.7 2.9 23 22-44 38-60 (266)
280 1b0u_A Histidine permease; ABC 97.4 8.2E-05 2.8E-09 57.5 2.9 30 15-44 25-55 (262)
281 3b85_A Phosphate starvation-in 97.4 6.8E-05 2.3E-09 55.9 2.3 23 22-44 23-45 (208)
282 2pze_A Cystic fibrosis transme 97.4 8.5E-05 2.9E-09 56.3 2.9 22 23-44 36-57 (229)
283 1g6h_A High-affinity branched- 97.4 8.4E-05 2.9E-09 57.3 2.9 31 14-44 25-56 (257)
284 2qor_A Guanylate kinase; phosp 97.4 8.8E-05 3E-09 55.1 2.9 24 21-44 12-35 (204)
285 2v9p_A Replication protein E1; 97.4 8.2E-05 2.8E-09 58.7 2.8 22 22-43 127-148 (305)
286 1qhx_A CPT, protein (chloramph 97.4 0.0001 3.6E-09 53.2 3.1 23 21-43 3-25 (178)
287 2olj_A Amino acid ABC transpor 97.4 9.1E-05 3.1E-09 57.3 2.9 22 23-44 52-73 (263)
288 2i3b_A HCR-ntpase, human cance 97.4 8.9E-05 3E-09 54.4 2.7 22 23-44 3-24 (189)
289 2bdt_A BH3686; alpha-beta prot 97.4 8.7E-05 3E-09 54.3 2.7 21 23-43 4-24 (189)
290 1ji0_A ABC transporter; ATP bi 97.3 9.5E-05 3.3E-09 56.4 2.9 30 15-44 25-55 (240)
291 1vpl_A ABC transporter, ATP-bi 97.3 9.5E-05 3.2E-09 57.0 2.9 29 16-44 35-64 (256)
292 2ghi_A Transport protein; mult 97.3 9.7E-05 3.3E-09 57.1 2.9 22 23-44 48-69 (260)
293 3lw7_A Adenylate kinase relate 97.3 0.00011 3.6E-09 52.9 3.0 20 22-41 2-21 (179)
294 2qi9_C Vitamin B12 import ATP- 97.3 9.9E-05 3.4E-09 56.6 2.9 33 12-44 16-49 (249)
295 1tev_A UMP-CMP kinase; ploop, 97.3 0.0001 3.6E-09 54.0 2.9 25 19-43 1-25 (196)
296 1knq_A Gluconate kinase; ALFA/ 97.3 9.3E-05 3.2E-09 53.4 2.5 22 22-43 9-30 (175)
297 2ixe_A Antigen peptide transpo 97.3 0.0001 3.5E-09 57.3 2.9 31 14-44 37-68 (271)
298 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00011 3.7E-09 56.5 3.0 22 23-44 31-52 (250)
299 3vaa_A Shikimate kinase, SK; s 97.3 0.00011 3.8E-09 54.3 3.0 29 15-43 18-47 (199)
300 2ihy_A ABC transporter, ATP-bi 97.3 0.00011 3.6E-09 57.4 2.9 30 15-44 40-70 (279)
301 2f1r_A Molybdopterin-guanine d 97.3 7.9E-05 2.7E-09 53.7 1.9 22 22-43 3-24 (171)
302 3t61_A Gluconokinase; PSI-biol 97.3 0.00012 4E-09 54.3 2.9 23 21-43 18-40 (202)
303 2zu0_C Probable ATP-dependent 97.3 0.00012 4.1E-09 56.8 3.0 22 23-44 48-69 (267)
304 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.5E-09 52.3 3.0 21 23-43 3-23 (173)
305 2nq2_C Hypothetical ABC transp 97.3 0.00012 4E-09 56.4 2.9 22 23-44 33-54 (253)
306 3uie_A Adenylyl-sulfate kinase 97.3 0.00012 4.2E-09 54.1 2.8 24 20-43 24-47 (200)
307 2eyu_A Twitching motility prot 97.3 0.00012 4.1E-09 56.6 2.8 24 20-43 24-47 (261)
308 2yz2_A Putative ABC transporte 97.3 0.00012 4.3E-09 56.7 2.9 31 14-44 25-56 (266)
309 2plr_A DTMP kinase, probable t 97.3 0.00013 4.5E-09 54.2 2.9 25 19-43 2-26 (213)
310 1u0l_A Probable GTPase ENGC; p 97.3 0.00012 4E-09 57.9 2.8 24 21-44 169-192 (301)
311 2pjz_A Hypothetical protein ST 97.3 0.00013 4.5E-09 56.4 2.9 23 23-45 32-54 (263)
312 1cke_A CK, MSSA, protein (cyti 97.3 0.00014 4.6E-09 54.9 3.0 22 22-43 6-27 (227)
313 3nh6_A ATP-binding cassette SU 97.3 0.00011 3.8E-09 58.0 2.5 23 22-44 81-103 (306)
314 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.8E-09 52.6 2.9 22 22-43 3-24 (181)
315 2if2_A Dephospho-COA kinase; a 97.3 0.00014 4.8E-09 53.9 2.9 21 23-43 3-23 (204)
316 1np6_A Molybdopterin-guanine d 97.3 0.00015 5.1E-09 52.4 2.9 24 21-44 6-29 (174)
317 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.4E-09 53.5 3.1 28 16-43 15-42 (201)
318 3tqc_A Pantothenate kinase; bi 97.2 0.00021 7.3E-09 56.7 4.0 26 18-43 89-114 (321)
319 3cm0_A Adenylate kinase; ATP-b 97.2 0.00016 5.6E-09 52.6 2.9 23 21-43 4-26 (186)
320 1jjv_A Dephospho-COA kinase; P 97.2 0.00016 5.6E-09 53.6 2.9 22 22-43 3-24 (206)
321 2x8a_A Nuclear valosin-contain 97.2 0.00015 5E-09 56.5 2.7 31 13-44 37-67 (274)
322 3lnc_A Guanylate kinase, GMP k 97.2 0.00012 3.9E-09 55.5 2.1 30 15-44 20-51 (231)
323 2jeo_A Uridine-cytidine kinase 97.2 0.00016 5.5E-09 55.3 2.8 22 22-43 26-47 (245)
324 1y63_A LMAJ004144AAA protein; 97.2 0.00019 6.5E-09 52.3 3.1 25 20-44 9-33 (184)
325 3iij_A Coilin-interacting nucl 97.2 0.00018 6.2E-09 52.1 2.9 24 20-43 10-33 (180)
326 2rhm_A Putative kinase; P-loop 97.2 0.00017 5.9E-09 52.7 2.9 23 21-43 5-27 (193)
327 1uf9_A TT1252 protein; P-loop, 97.2 0.00018 6.1E-09 53.1 2.9 28 17-44 4-31 (203)
328 2yv5_A YJEQ protein; hydrolase 97.2 0.00017 5.9E-09 57.0 3.0 22 21-42 165-186 (302)
329 2qt1_A Nicotinamide riboside k 97.2 0.00019 6.5E-09 53.3 3.0 24 21-44 21-44 (207)
330 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00018 6.2E-09 58.0 3.0 23 23-45 32-54 (359)
331 1gvn_B Zeta; postsegregational 97.2 0.00026 8.8E-09 55.5 3.7 25 19-43 31-55 (287)
332 3fb4_A Adenylate kinase; psych 97.2 0.0002 6.9E-09 53.5 3.0 21 23-43 2-22 (216)
333 1xjc_A MOBB protein homolog; s 97.2 0.00023 7.7E-09 51.1 3.1 23 21-43 4-26 (169)
334 2bbs_A Cystic fibrosis transme 97.2 0.00019 6.6E-09 56.3 2.9 22 23-44 66-87 (290)
335 3trf_A Shikimate kinase, SK; a 97.2 0.00023 7.7E-09 51.8 3.1 23 21-43 5-27 (185)
336 4a74_A DNA repair and recombin 97.2 0.00019 6.3E-09 54.1 2.6 26 19-44 23-48 (231)
337 2v54_A DTMP kinase, thymidylat 97.1 0.00023 7.9E-09 52.6 3.1 25 20-44 3-27 (204)
338 3dl0_A Adenylate kinase; phosp 97.1 0.00022 7.6E-09 53.3 3.0 21 23-43 2-22 (216)
339 2vli_A Antibiotic resistance p 97.1 0.00017 5.7E-09 52.4 2.2 25 19-43 3-27 (183)
340 1z47_A CYSA, putative ABC-tran 97.1 0.00021 7.3E-09 57.6 3.0 32 14-45 33-65 (355)
341 3tlx_A Adenylate kinase 2; str 97.1 0.00021 7.4E-09 54.6 2.9 25 19-43 27-51 (243)
342 2ehv_A Hypothetical protein PH 97.1 0.0002 7E-09 54.6 2.8 24 19-42 28-51 (251)
343 2jaq_A Deoxyguanosine kinase; 97.1 0.00023 7.9E-09 52.5 2.9 21 23-43 2-22 (205)
344 1lw7_A Transcriptional regulat 97.1 0.00019 6.6E-09 58.3 2.7 23 22-44 171-193 (365)
345 2yyz_A Sugar ABC transporter, 97.1 0.00022 7.6E-09 57.6 3.0 31 15-45 22-53 (359)
346 3tui_C Methionine import ATP-b 97.1 0.00023 7.7E-09 57.5 3.0 23 23-45 56-78 (366)
347 4e22_A Cytidylate kinase; P-lo 97.1 0.00023 7.9E-09 54.7 2.9 24 19-42 25-48 (252)
348 1aky_A Adenylate kinase; ATP:A 97.1 0.00025 8.7E-09 53.2 3.1 24 20-43 3-26 (220)
349 2wwf_A Thymidilate kinase, put 97.1 0.00026 9E-09 52.6 3.2 24 20-43 9-32 (212)
350 2it1_A 362AA long hypothetical 97.1 0.00024 8.1E-09 57.5 3.0 24 22-45 30-53 (362)
351 1nn5_A Similar to deoxythymidy 97.1 0.00027 9.3E-09 52.6 3.1 24 20-43 8-31 (215)
352 2kjq_A DNAA-related protein; s 97.1 0.00018 6E-09 50.6 1.9 25 20-44 35-59 (149)
353 3rlf_A Maltose/maltodextrin im 97.1 0.00025 8.4E-09 57.7 3.0 23 23-45 31-53 (381)
354 1rz3_A Hypothetical protein rb 97.1 0.00024 8.1E-09 52.6 2.7 25 19-43 20-44 (201)
355 2c95_A Adenylate kinase 1; tra 97.1 0.00025 8.6E-09 52.0 2.8 24 20-43 8-31 (196)
356 3d31_A Sulfate/molybdate ABC t 97.1 0.00022 7.4E-09 57.4 2.6 31 15-45 19-50 (348)
357 1nks_A Adenylate kinase; therm 97.1 0.00026 9.1E-09 51.7 2.9 21 23-43 3-23 (194)
358 1sq5_A Pantothenate kinase; P- 97.1 0.00024 8.1E-09 56.4 2.8 26 19-44 78-103 (308)
359 1v43_A Sugar-binding transport 97.1 0.00025 8.7E-09 57.5 3.0 31 15-45 30-61 (372)
360 1g29_1 MALK, maltose transport 97.1 0.00026 8.7E-09 57.5 3.0 31 15-45 22-53 (372)
361 1odf_A YGR205W, hypothetical 3 97.1 0.00025 8.5E-09 55.7 2.8 26 18-43 28-53 (290)
362 1zd8_A GTP:AMP phosphotransfer 97.1 0.0003 1E-08 53.1 3.1 24 20-43 6-29 (227)
363 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00026 9E-09 56.6 2.7 33 12-44 161-194 (330)
364 2yvu_A Probable adenylyl-sulfa 97.0 0.0003 1E-08 51.3 2.8 25 19-43 11-35 (186)
365 3jvv_A Twitching mobility prot 97.0 0.00028 9.6E-09 57.0 2.8 22 22-43 124-145 (356)
366 2pez_A Bifunctional 3'-phospho 97.0 0.00031 1.1E-08 50.9 2.8 25 19-43 3-27 (179)
367 1oxx_K GLCV, glucose, ABC tran 97.0 0.00021 7.2E-09 57.6 2.0 33 13-45 22-55 (353)
368 1ixz_A ATP-dependent metallopr 97.0 0.00029 1E-08 54.1 2.7 21 24-44 52-72 (254)
369 2gza_A Type IV secretion syste 97.0 0.00029 1E-08 57.1 2.8 23 22-44 176-198 (361)
370 3r20_A Cytidylate kinase; stru 97.0 0.00036 1.2E-08 52.8 3.1 25 19-43 7-31 (233)
371 1zak_A Adenylate kinase; ATP:A 97.0 0.00035 1.2E-08 52.5 2.9 24 20-43 4-27 (222)
372 3sr0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 51.7 3.0 22 22-43 1-22 (206)
373 3gd7_A Fusion complex of cysti 97.0 0.00035 1.2E-08 57.1 3.0 22 23-44 49-70 (390)
374 2bwj_A Adenylate kinase 5; pho 97.0 0.00033 1.1E-08 51.4 2.6 23 21-43 12-34 (199)
375 1via_A Shikimate kinase; struc 97.0 0.00038 1.3E-08 50.2 2.8 21 23-43 6-26 (175)
376 1e4v_A Adenylate kinase; trans 97.0 0.00041 1.4E-08 51.8 3.0 21 23-43 2-22 (214)
377 1tue_A Replication protein E1; 97.0 0.00036 1.2E-08 51.4 2.6 22 22-43 59-80 (212)
378 3umf_A Adenylate kinase; rossm 97.0 0.00038 1.3E-08 52.1 2.8 23 21-43 29-51 (217)
379 1ak2_A Adenylate kinase isoenz 97.0 0.00045 1.5E-08 52.3 3.1 27 17-43 12-38 (233)
380 1gtv_A TMK, thymidylate kinase 97.0 0.00026 9E-09 52.7 1.8 21 23-43 2-22 (214)
381 2ewv_A Twitching motility prot 96.9 0.00038 1.3E-08 56.6 2.8 22 22-43 137-158 (372)
382 1iy2_A ATP-dependent metallopr 96.9 0.00039 1.3E-08 54.1 2.7 21 24-44 76-96 (278)
383 2p5t_B PEZT; postsegregational 96.9 0.00032 1.1E-08 53.9 2.2 26 18-43 29-54 (253)
384 2pt5_A Shikimate kinase, SK; a 96.9 0.00049 1.7E-08 49.1 3.0 21 23-43 2-22 (168)
385 1vht_A Dephospho-COA kinase; s 96.9 0.00044 1.5E-08 51.8 2.9 23 21-43 4-26 (218)
386 1ukz_A Uridylate kinase; trans 96.9 0.00042 1.4E-08 51.2 2.7 25 19-43 13-37 (203)
387 2w58_A DNAI, primosome compone 96.9 0.00056 1.9E-08 50.5 3.4 22 22-43 55-76 (202)
388 2iyv_A Shikimate kinase, SK; t 96.9 0.0005 1.7E-08 49.9 2.8 22 22-43 3-24 (184)
389 2z0h_A DTMP kinase, thymidylat 96.9 0.00057 2E-08 50.1 3.0 21 23-43 2-22 (197)
390 2pbr_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 49.9 3.1 21 23-43 2-22 (195)
391 2grj_A Dephospho-COA kinase; T 96.9 0.00056 1.9E-08 50.2 2.9 25 19-43 10-34 (192)
392 3be4_A Adenylate kinase; malar 96.9 0.00056 1.9E-08 51.2 3.0 23 21-43 5-27 (217)
393 1p9r_A General secretion pathw 96.9 0.00047 1.6E-08 56.9 2.7 25 20-44 166-190 (418)
394 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00046 1.6E-08 57.7 2.6 25 20-44 137-161 (460)
395 3b9q_A Chloroplast SRP recepto 96.8 0.00053 1.8E-08 54.1 2.8 23 21-43 100-122 (302)
396 1qf9_A UMP/CMP kinase, protein 96.8 0.00059 2E-08 49.8 2.9 22 22-43 7-28 (194)
397 3cwq_A Para family chromosome 96.8 0.015 5.2E-07 43.0 10.7 80 113-204 67-147 (209)
398 2vp4_A Deoxynucleoside kinase; 96.8 0.00048 1.6E-08 52.1 2.5 25 20-44 19-43 (230)
399 2oap_1 GSPE-2, type II secreti 96.8 0.00052 1.8E-08 58.2 2.9 22 23-44 262-283 (511)
400 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00058 2E-08 52.7 2.9 23 21-43 4-26 (260)
401 1uj2_A Uridine-cytidine kinase 96.8 0.00059 2E-08 52.4 2.9 25 19-43 20-44 (252)
402 2xb4_A Adenylate kinase; ATP-b 96.8 0.00064 2.2E-08 51.1 3.0 21 23-43 2-22 (223)
403 1e6c_A Shikimate kinase; phosp 96.8 0.00064 2.2E-08 48.7 2.8 22 22-43 3-24 (173)
404 4ido_A Atlastin-1; GTPase, GTP 96.8 0.011 3.6E-07 49.1 10.3 25 18-42 64-88 (457)
405 3nwj_A ATSK2; P loop, shikimat 96.8 0.00053 1.8E-08 52.5 2.4 23 21-43 48-70 (250)
406 1jbk_A CLPB protein; beta barr 96.8 0.0012 4.2E-08 47.8 4.2 25 20-44 42-66 (195)
407 2f6r_A COA synthase, bifunctio 96.8 0.00062 2.1E-08 53.2 2.7 25 19-43 73-97 (281)
408 1q3t_A Cytidylate kinase; nucl 96.8 0.00071 2.4E-08 51.3 3.0 26 18-43 13-38 (236)
409 1in4_A RUVB, holliday junction 96.8 0.00063 2.1E-08 54.5 2.7 23 22-44 52-74 (334)
410 4eaq_A DTMP kinase, thymidylat 96.7 0.00078 2.7E-08 50.9 3.0 24 20-43 25-48 (229)
411 2ze6_A Isopentenyl transferase 96.7 0.0007 2.4E-08 52.0 2.7 21 23-43 3-23 (253)
412 3b9p_A CG5977-PA, isoform A; A 96.7 0.00092 3.2E-08 52.5 3.4 29 16-44 49-77 (297)
413 2obl_A ESCN; ATPase, hydrolase 96.7 0.00074 2.5E-08 54.4 2.8 23 22-44 72-94 (347)
414 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00087 3E-08 50.4 3.0 24 20-43 22-45 (235)
415 3kta_A Chromosome segregation 96.7 0.00083 2.8E-08 48.6 2.7 23 21-43 26-48 (182)
416 3gmt_A Adenylate kinase; ssgci 96.7 0.00094 3.2E-08 50.3 3.0 25 19-43 6-30 (230)
417 1cr0_A DNA primase/helicase; R 96.7 0.00076 2.6E-08 53.0 2.6 24 21-44 35-58 (296)
418 1m7g_A Adenylylsulfate kinase; 96.7 0.00084 2.9E-08 50.0 2.7 24 20-43 24-47 (211)
419 3ake_A Cytidylate kinase; CMP 96.7 0.00091 3.1E-08 49.5 2.9 21 23-43 4-24 (208)
420 1a7j_A Phosphoribulokinase; tr 96.7 0.00045 1.6E-08 54.2 1.3 24 20-43 4-27 (290)
421 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.9E-08 50.8 3.5 24 21-44 45-68 (257)
422 3euj_A Chromosome partition pr 96.7 0.00083 2.9E-08 56.3 2.8 22 22-43 30-51 (483)
423 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00087 3E-08 57.3 3.0 24 22-45 48-71 (538)
424 2og2_A Putative signal recogni 96.7 0.00086 2.9E-08 54.1 2.7 24 20-43 156-179 (359)
425 3end_A Light-independent proto 96.6 0.0057 1.9E-07 48.2 7.4 69 113-189 156-225 (307)
426 1svm_A Large T antigen; AAA+ f 96.6 0.00091 3.1E-08 54.4 2.7 22 22-43 170-191 (377)
427 1zcb_A G alpha I/13; GTP-bindi 96.6 0.00097 3.3E-08 54.0 2.9 59 97-155 210-279 (362)
428 3b60_A Lipid A export ATP-bind 96.6 0.00094 3.2E-08 57.7 2.9 22 23-44 371-392 (582)
429 1zuh_A Shikimate kinase; alpha 96.6 0.0012 4.1E-08 47.1 2.9 21 23-43 9-29 (168)
430 2cvh_A DNA repair and recombin 96.6 0.0012 4.2E-08 49.2 3.1 25 19-43 18-42 (220)
431 3j16_B RLI1P; ribosome recycli 96.6 0.0011 3.7E-08 57.4 3.0 24 22-45 104-127 (608)
432 2dpy_A FLII, flagellum-specifi 96.6 0.0011 3.7E-08 55.2 2.8 22 23-44 159-180 (438)
433 2h92_A Cytidylate kinase; ross 96.6 0.0012 4.2E-08 49.3 2.9 25 19-43 1-25 (219)
434 3ozx_A RNAse L inhibitor; ATP 96.6 0.0011 3.8E-08 56.6 2.9 23 23-45 27-49 (538)
435 3b5x_A Lipid A export ATP-bind 96.6 0.0011 3.7E-08 57.3 2.9 23 23-45 371-393 (582)
436 3bos_A Putative DNA replicatio 96.5 0.0013 4.6E-08 49.5 3.1 24 20-43 51-74 (242)
437 3qf4_A ABC transporter, ATP-bi 96.5 0.0015 5E-08 56.6 3.6 22 23-44 371-392 (587)
438 2p65_A Hypothetical protein PF 96.5 0.0012 4E-08 47.7 2.5 25 20-44 42-66 (187)
439 3k9g_A PF-32 protein; ssgcid, 96.5 0.031 1.1E-06 43.0 10.8 65 113-188 144-208 (267)
440 3bk7_A ABC transporter ATP-bin 96.5 0.0012 4.1E-08 57.2 2.9 24 22-45 118-141 (607)
441 2yl4_A ATP-binding cassette SU 96.5 0.00095 3.3E-08 57.8 2.3 22 23-44 372-393 (595)
442 1n0w_A DNA repair protein RAD5 96.5 0.0014 4.9E-08 49.6 3.0 26 19-44 22-47 (243)
443 3qf4_B Uncharacterized ABC tra 96.5 0.0011 3.7E-08 57.5 2.4 23 22-44 382-404 (598)
444 1qhl_A Protein (cell division 96.5 0.00029 1E-08 53.1 -1.0 22 23-44 29-50 (227)
445 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0022 7.5E-08 51.5 4.0 24 20-43 23-46 (359)
446 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0014 4.7E-08 46.0 2.5 22 21-42 23-44 (149)
447 1ltq_A Polynucleotide kinase; 96.5 0.0014 4.9E-08 51.5 2.9 22 22-43 3-24 (301)
448 3ozx_A RNAse L inhibitor; ATP 96.5 0.0014 4.7E-08 56.0 2.9 23 23-45 296-318 (538)
449 3exa_A TRNA delta(2)-isopenten 96.4 0.0016 5.3E-08 51.4 2.9 26 19-44 1-26 (322)
450 4a82_A Cystic fibrosis transme 96.4 0.00091 3.1E-08 57.7 1.8 23 22-44 368-390 (578)
451 3t15_A Ribulose bisphosphate c 96.4 0.0022 7.6E-08 50.3 3.7 26 19-44 34-59 (293)
452 2qby_A CDC6 homolog 1, cell di 96.4 0.0024 8.1E-08 51.8 4.0 25 19-43 43-67 (386)
453 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0016 5.5E-08 55.6 3.0 24 22-45 313-336 (538)
454 3bk7_A ABC transporter ATP-bin 96.4 0.0017 5.8E-08 56.3 3.0 24 22-45 383-406 (607)
455 1njg_A DNA polymerase III subu 96.4 0.0021 7E-08 48.4 3.2 23 21-43 45-67 (250)
456 3lv8_A DTMP kinase, thymidylat 96.3 0.0022 7.6E-08 48.6 3.1 29 15-43 21-49 (236)
457 3zvl_A Bifunctional polynucleo 96.3 0.0019 6.6E-08 53.3 3.0 24 20-43 257-280 (416)
458 1wcv_1 SOJ, segregation protei 96.3 0.02 6.8E-07 43.8 8.5 71 112-191 110-183 (257)
459 1sxj_E Activator 1 40 kDa subu 96.3 0.0026 8.9E-08 51.2 3.6 20 24-43 39-58 (354)
460 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0019 6.7E-08 52.3 2.8 21 22-42 24-44 (365)
461 3j16_B RLI1P; ribosome recycli 96.3 0.002 6.8E-08 55.8 3.0 23 23-45 380-402 (608)
462 2chg_A Replication factor C sm 96.3 0.0026 8.9E-08 47.2 3.3 21 23-43 40-60 (226)
463 2v1u_A Cell division control p 96.2 0.0033 1.1E-07 51.0 3.9 25 19-43 42-66 (387)
464 3h4m_A Proteasome-activating n 96.2 0.0025 8.6E-08 49.6 3.0 25 20-44 50-74 (285)
465 3n70_A Transport activator; si 96.2 0.0036 1.2E-07 43.5 3.5 26 19-44 22-47 (145)
466 1nlf_A Regulatory protein REPA 96.2 0.0027 9.1E-08 49.4 3.0 25 19-43 28-52 (279)
467 1u0j_A DNA replication protein 96.2 0.0027 9.2E-08 48.9 3.0 22 22-43 105-126 (267)
468 3cr8_A Sulfate adenylyltranfer 96.2 0.0019 6.4E-08 55.3 2.3 25 20-44 368-392 (552)
469 3kjh_A CO dehydrogenase/acetyl 96.2 0.005 1.7E-07 46.8 4.5 64 113-188 131-194 (254)
470 1p5z_B DCK, deoxycytidine kina 96.2 0.0018 6.1E-08 50.0 1.9 26 19-44 22-47 (263)
471 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0028 9.7E-08 48.6 3.0 24 20-43 38-61 (262)
472 4edh_A DTMP kinase, thymidylat 96.1 0.003 1E-07 47.1 2.9 25 19-43 4-28 (213)
473 3cf0_A Transitional endoplasmi 96.1 0.003 1E-07 49.7 3.0 25 20-44 48-72 (301)
474 3te6_A Regulatory protein SIR3 96.1 0.0028 9.7E-08 50.2 2.8 27 18-44 42-68 (318)
475 2qmh_A HPR kinase/phosphorylas 96.1 0.0031 1.1E-07 46.2 2.8 24 21-44 34-57 (205)
476 2iw3_A Elongation factor 3A; a 96.1 0.0021 7.2E-08 58.3 2.3 22 23-44 701-722 (986)
477 2iw3_A Elongation factor 3A; a 96.1 0.003 1E-07 57.4 3.2 25 22-46 462-486 (986)
478 3syl_A Protein CBBX; photosynt 96.1 0.0033 1.1E-07 49.5 3.1 24 20-43 66-89 (309)
479 2ocp_A DGK, deoxyguanosine kin 96.1 0.0032 1.1E-07 47.8 2.9 24 21-44 2-25 (241)
480 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0035 1.2E-07 49.9 3.2 26 19-44 43-68 (322)
481 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0033 1.1E-07 53.0 3.2 22 23-44 66-87 (499)
482 1fnn_A CDC6P, cell division co 96.1 0.0032 1.1E-07 51.2 3.0 22 23-44 46-67 (389)
483 1l8q_A Chromosomal replication 96.1 0.0029 1E-07 50.3 2.7 23 21-43 37-59 (324)
484 1sxj_C Activator 1 40 kDa subu 96.0 0.0049 1.7E-07 49.4 3.9 21 24-44 49-69 (340)
485 2dr3_A UPF0273 protein PH0284; 96.0 0.0041 1.4E-07 47.1 3.1 24 20-43 22-45 (247)
486 1pzn_A RAD51, DNA repair and r 96.0 0.0033 1.1E-07 50.7 2.6 26 19-44 129-154 (349)
487 3crm_A TRNA delta(2)-isopenten 96.0 0.0039 1.3E-07 49.5 2.9 22 22-43 6-27 (323)
488 3eie_A Vacuolar protein sortin 96.0 0.0043 1.5E-07 49.4 3.2 26 19-44 49-74 (322)
489 3v9p_A DTMP kinase, thymidylat 95.9 0.0036 1.2E-07 47.1 2.6 25 19-43 23-47 (227)
490 3d8b_A Fidgetin-like protein 1 95.9 0.0045 1.6E-07 50.0 3.4 27 18-44 114-140 (357)
491 2qgz_A Helicase loader, putati 95.9 0.0062 2.1E-07 48.1 4.0 23 21-43 152-174 (308)
492 2qby_B CDC6 homolog 3, cell di 95.9 0.0047 1.6E-07 50.2 3.4 25 19-43 43-67 (384)
493 1d2n_A N-ethylmaleimide-sensit 95.9 0.004 1.4E-07 48.2 2.8 26 19-44 62-87 (272)
494 2ce7_A Cell division protein F 95.9 0.0041 1.4E-07 52.2 2.9 23 22-44 50-72 (476)
495 1ofh_A ATP-dependent HSL prote 95.9 0.0041 1.4E-07 48.9 2.7 24 20-43 49-72 (310)
496 3d3q_A TRNA delta(2)-isopenten 95.9 0.0044 1.5E-07 49.5 2.9 22 22-43 8-29 (340)
497 2r62_A Cell division protease 95.8 0.0022 7.5E-08 49.5 1.1 23 22-44 45-67 (268)
498 2orw_A Thymidine kinase; TMTK, 95.8 0.0055 1.9E-07 44.5 3.1 21 22-42 4-24 (184)
499 4tmk_A Protein (thymidylate ki 95.8 0.0054 1.9E-07 45.7 3.1 24 20-43 2-25 (213)
500 3uc9_A Increased recombination 95.8 0.19 6.4E-06 37.6 11.2 25 20-44 26-52 (233)
No 1
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=2.6e-32 Score=205.38 Aligned_cols=194 Identities=56% Similarity=0.909 Sum_probs=136.2
Q ss_pred CchHhHH----HHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCC
Q psy871 1 MFQIWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDN 76 (249)
Q Consensus 1 ~~~~~~~----~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~ 76 (249)
|+-++.| +...+..+++..++.+|+++|++|||||||+++|.+..+..+.||++.....+
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~---------------- 64 (198)
T 1f6b_A 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL---------------- 64 (198)
T ss_dssp ------------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE----------------
T ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEE----------------
Confidence 4445666 77778888899999999999999999999999998876655455554332222
Q ss_pred CchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh
Q psy871 77 AGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR 156 (249)
Q Consensus 77 ~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 156 (249)
...+..+.+|||||++.+...+. .++..+|++++|+|++++
T Consensus 65 ---------------------------------~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~ 105 (198)
T 1f6b_A 65 ---------------------------------TIAGMTFTTFDLGGHIQARRVWK------NYLPAINGIVFLVDCADH 105 (198)
T ss_dssp ---------------------------------EETTEEEEEEEECC----CCGGG------GGGGGCSEEEEEEETTCG
T ss_pred ---------------------------------EECCEEEEEEECCCcHhhHHHHH------HHHhcCCEEEEEEECCCH
Confidence 11125688999999988877666 667889999999999999
Q ss_pred hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc
Q psy871 157 ERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236 (249)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 236 (249)
.++.....++.+++......++|+++|+||+|+.+....+++.+.++......+.............+++++|||++|.|
T Consensus 106 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 185 (198)
T 1f6b_A 106 ERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQG 185 (198)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCC
Confidence 99999888888887654456899999999999988777888888776543222211111111122457899999999999
Q ss_pred hHHHHHHHhhhcC
Q psy871 237 YGDGFRWLANYID 249 (249)
Q Consensus 237 v~~l~~~l~~~i~ 249 (249)
+++++++|.+.++
T Consensus 186 v~~l~~~l~~~l~ 198 (198)
T 1f6b_A 186 YGEGFRWMAQYID 198 (198)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998774
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.98 E-value=1.2e-31 Score=203.44 Aligned_cols=165 Identities=21% Similarity=0.190 Sum_probs=127.7
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
.|-+++++||+|+|.+|||||||+++++.+.+. .+.||++.......
T Consensus 7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~-------------------------------- 54 (216)
T 4dkx_A 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT-------------------------------- 54 (216)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEE--------------------------------
T ss_pred CCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEE--------------------------------
Confidence 456788999999999999999999999988776 44566654332220
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
....+....+.+|||+|+++|..+.. .++..++++++|+|++++.+|..+..|+..+....
T Consensus 55 -------------~~~~~~~v~l~iwDtaGqe~~~~l~~------~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~ 115 (216)
T 4dkx_A 55 -------------MYLEDRTIRLQLWDTAGLERFRSLIP------SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER 115 (216)
T ss_dssp -------------EECSSCEEEEEEECCSCTTTCGGGHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred -------------EEecceEEEEEEEECCCchhhhhHHH------HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc
Confidence 11233445688999999999999888 77899999999999999999999998888876543
Q ss_pred CCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ .+..++..++.+..+ +++++|||++|.|++++|+.|++.|
T Consensus 116 -~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-----------------~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 116 -GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp -TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred -CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-----------------CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 36799999999999965 578889999888877 7899999999999999999998765
No 3
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=9.9e-31 Score=195.48 Aligned_cols=185 Identities=49% Similarity=0.782 Sum_probs=129.2
Q ss_pred HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHH
Q psy871 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLL 83 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~ 83 (249)
++.++.+.+..+++..++.+|+++|++|||||||+++|.+..+..+.||.+.....+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~----------------------- 62 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL----------------------- 62 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE-----------------------
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEE-----------------------
Confidence 455677778888899999999999999999999999999887765556655432222
Q ss_pred HHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH
Q psy871 84 HMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK 163 (249)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~ 163 (249)
...+..+.+|||||++.+..... .++..+|++++|+|++++.++....
T Consensus 63 --------------------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~ 110 (190)
T 1m2o_B 63 --------------------------AIGNIKFTTFDLGGHIQARRLWK------DYFPEVNGIVFLVDAADPERFDEAR 110 (190)
T ss_dssp --------------------------EETTEEEEEEECCCSGGGTTSGG------GGCTTCCEEEEEEETTCGGGHHHHH
T ss_pred --------------------------EECCEEEEEEECCCCHHHHHHHH------HHHhcCCEEEEEEECCChHHHHHHH
Confidence 11125688999999998877665 6678899999999999999999988
Q ss_pred HHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871 164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 164 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
.++.+++......+.|+++|+||+|+.+....+++.+.++... ..+... . .....+++++|||++|.|+++++++
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR--I--EGQRPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-----C--CSSCCEEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc--c--cccceEEEEEeECCcCCCHHHHHHH
Confidence 8888887654457899999999999988777888877665432 111110 0 1123478999999999999999999
Q ss_pred Hhhhc
Q psy871 244 LANYI 248 (249)
Q Consensus 244 l~~~i 248 (249)
|.+.|
T Consensus 186 l~~~l 190 (190)
T 1m2o_B 186 LSQYI 190 (190)
T ss_dssp HHTTC
T ss_pred HHhhC
Confidence 98865
No 4
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-29 Score=187.51 Aligned_cols=165 Identities=25% Similarity=0.429 Sum_probs=125.6
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+..++++|+++|++|||||||+++|+++.+....||.+.....+
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~------------------------------------ 55 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI------------------------------------ 55 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE------------------------------------
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEE------------------------------------
Confidence 34788999999999999999999999776654444444222221
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+..+.+||+||++++..... .++..+|++++|+|++++.++.....++.++.......
T Consensus 56 -------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 116 (187)
T 1zj6_A 56 -------------VINNTRFLMWDIGGQESLRSSWN------TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 116 (187)
T ss_dssp -------------EETTEEEEEEECCC----CGGGH------HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGT
T ss_pred -------------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhC
Confidence 11236789999999988877766 56788999999999999999999888888887654446
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+....+++.+.+.... .....+++++|||++|.|+++++++|.+.+
T Consensus 117 ~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 117 KAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCcCCCCHHHHHHHhChhh------------hcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 899999999999988767777776665431 112347899999999999999999998865
No 5
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=6.9e-29 Score=180.90 Aligned_cols=160 Identities=26% Similarity=0.408 Sum_probs=125.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
+||+++|++|||||||+++|++..+....||++.....+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~----------------------------------------- 39 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----------------------------------------- 39 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEE-----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEE-----------------------------------------
Confidence 489999999999999999999877665555555222111
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
...+..+.+||+||++++..... .++..+|++++|+|++++.++.....++..++......+.|++
T Consensus 40 --------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (164)
T 1r8s_A 40 --------EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105 (164)
T ss_dssp --------ECSSCEEEEEECCCCGGGHHHHH------HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred --------EECCEEEEEEEcCCChhhHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE
Confidence 11235689999999998877666 5678899999999999999999888888888765455689999
Q ss_pred EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+||+|+.+....+++.+...... .....+++++|||++|.|+++++++|.+.+
T Consensus 106 lv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 106 VFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp EEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEECcCCcCCCCHHHHHHHhCccc------------ccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 9999999987766666665544321 112347899999999999999999998865
No 6
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.8e-29 Score=186.14 Aligned_cols=164 Identities=30% Similarity=0.465 Sum_probs=125.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+.++++|+++|++|||||||+++|.+..+....||.+.....+
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~------------------------------------- 55 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV------------------------------------- 55 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEE-------------------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEE-------------------------------------
Confidence 4678999999999999999999998765443333333111111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+..+.+||+||++.+..... .++..+|++++|+|++++.++.....++.+++......+
T Consensus 56 ------------~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 117 (181)
T 1fzq_A 56 ------------QSQGFKLNVWDIGGQRKIRPYWR------SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117 (181)
T ss_dssp ------------EETTEEEEEEECSSCGGGHHHHH------HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTT
T ss_pred ------------EECCEEEEEEECCCCHHHHHHHH------HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcC
Confidence 11145788999999998877665 567889999999999999999988888888766545578
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+....+++.+.+.... .....+++++|||++|.|+++++++|.+.+
T Consensus 118 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 118 VPVLIFANKQDLLTAAPASEIAEGLNLHT------------IRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CCEEEEEECcCcccCCCHHHHHHHhCchh------------ccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 99999999999988766666665544321 112347899999999999999999998865
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2e-29 Score=188.73 Aligned_cols=164 Identities=27% Similarity=0.390 Sum_probs=122.1
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+++++|+++|++|||||||+++|+++.+....||++.....
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~-------------------------------------- 67 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-------------------------------------- 67 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEE--------------------------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEE--------------------------------------
Confidence 467899999999999999999999876654333333311111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
+...+..+.+||+||++++..... .++..+|++++|+|++++.++.....++.+++......+
T Consensus 68 -----------~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~ 130 (192)
T 2b6h_A 68 -----------VEYKNICFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD 130 (192)
T ss_dssp -----------EEETTEEEEEEECC-----CTTHH------HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred -----------EEECCEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCC
Confidence 112346789999999988877666 566889999999999999999988888888876554568
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+....+++.+...... .....+++++|||++|.|+++++++|.+.+
T Consensus 131 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 131 AVLLVFANKQDMPNAMPVSELTDKLGLQH------------LRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 99999999999987766666666554322 112347899999999999999999999876
No 8
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.3e-29 Score=189.25 Aligned_cols=163 Identities=29% Similarity=0.410 Sum_probs=126.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++++|+++|++|||||||+++|....+....||.+.....+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 61 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL-------------------------------------- 61 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEE--------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEE--------------------------------------
Confidence 578999999999999999999998766554444443222111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+..+.+|||||++++..... .+++.+|++++|+|++++.++.....++.+++......+.
T Consensus 62 -----------~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 2x77_A 62 -----------QYKNISFEVWDLGGQTGVRPYWR------CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS 124 (189)
T ss_dssp -----------EETTEEEEEEEECCSSSSCCCCS------SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred -----------EECCEEEEEEECCCCHhHHHHHH------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 11245789999999988776665 6678999999999999999999888888888765555689
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+....+++.+...... .....+++++|||++|.|+++++++|.+.+
T Consensus 125 piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 125 LLLIFANKQDLPDAASEAEIAEQLGVSS------------IMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEEECCCCcCCCCHHHHHHHhChhh------------ccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 9999999999988766666666554322 112346899999999999999999998765
No 9
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=9.5e-29 Score=181.34 Aligned_cols=163 Identities=26% Similarity=0.403 Sum_probs=128.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.++++|+++|++|||||||+++|.+..+....||.+.....+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 46 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV-------------------------------------- 46 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE--------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEE--------------------------------------
Confidence 457899999999999999999999887765555554322222
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
......+.+||+||++.+..... .++..+|++++|+|++++.++.....++..++......+.
T Consensus 47 -----------~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 109 (171)
T 1upt_A 47 -----------TYKNLKFQVWDLGGLTSIRPYWR------CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA 109 (171)
T ss_dssp -----------EETTEEEEEEEECCCGGGGGGGG------GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred -----------EECCEEEEEEECCCChhhhHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 01145689999999988877666 6678999999999999999998888888888765445689
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+....+++........ .....++++++||++|.|+++++++|.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 110 ILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCCCHHHHHHHhCchh------------ccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 9999999999988766666666554322 112347899999999999999999998865
No 10
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1e-28 Score=183.81 Aligned_cols=163 Identities=29% Similarity=0.425 Sum_probs=127.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.++++|+++|++|||||||+++|++.......||.+.....+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 57 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL-------------------------------------- 57 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEE--------------------------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEE--------------------------------------
Confidence 678999999999999999999999877445555554222221
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+..+.+|||||++++..... .+++.+|++++|+|++++.++.....++.+++......+.
T Consensus 58 -----------~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 120 (186)
T 1ksh_A 58 -----------EHRGFKLNIWDVGGQKSLRSYWR------NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 120 (186)
T ss_dssp -----------EETTEEEEEEEECCSHHHHTTGG------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred -----------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCC
Confidence 11245789999999988877666 6778999999999999999999888888888765555689
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.++...+++.+.+.... .....++++++||++|.|+++++++|.+.+
T Consensus 121 piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 121 TLLIFANKQDLPGALSCNAIQEALELDS------------IRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEeCccCCCCCCHHHHHHHhChhh------------ccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999988767777666554321 112347899999999999999999998764
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=5.8e-29 Score=184.45 Aligned_cols=166 Identities=25% Similarity=0.418 Sum_probs=126.2
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
....+.++|+++|++|||||||+++|++..+....||.+.....+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~----------------------------------- 60 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI----------------------------------- 60 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEE-----------------------------------
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEE-----------------------------------
Confidence 445678899999999999999999999876644444444222111
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+..+.+||+||++++..... .++..+|++++|+|++++.++..+..++..++.....
T Consensus 61 --------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~ 120 (181)
T 2h17_A 61 --------------VINNTRFLMWDIGGQESLRSSWN------TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120 (181)
T ss_dssp --------------EETTEEEEEEEESSSGGGTCGGG------GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGG
T ss_pred --------------EECCEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh
Confidence 11236789999999988877766 6678899999999999999999888888888765445
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+.+....+++.+.+.... .....+++++|||++|.|+++++++|.+.+
T Consensus 121 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred CCCeEEEEEECCCcccCCCHHHHHHHhCccc------------ccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 7899999999999988767777777664322 112347899999999999999999998764
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.5e-28 Score=183.31 Aligned_cols=166 Identities=28% Similarity=0.393 Sum_probs=127.7
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
...+++++|+|+|++|||||||+++|++..+. ...||.+.....+
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---------------------------------- 62 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI---------------------------------- 62 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----------------------------------
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----------------------------------
Confidence 34577899999999999999999999987765 3344444221111
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
......+.+||+||++++..... .++..+|++++|+|++++.++..+..++..++....
T Consensus 63 ---------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~ 121 (188)
T 1zd9_A 63 ---------------TKGNVTIKLWDIGGQPRFRSMWE------RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ 121 (188)
T ss_dssp ---------------EETTEEEEEEEECCSHHHHTTHH------HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred ---------------EeCCEEEEEEECCCCHhHHHHHH------HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc
Confidence 12245789999999998877766 566889999999999999999998888888876544
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+......+++.+...... .....+++++|||++|.|+++++++|.+.+
T Consensus 122 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 122 LQGIPVLVLGNKRDLPGALDEKELIEKMNLSA------------IQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred cCCCCEEEEEECCCCccCCCHHHHHHHhChhh------------hccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999987666666655544321 112347899999999999999999999876
No 13
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.6e-29 Score=184.66 Aligned_cols=163 Identities=26% Similarity=0.432 Sum_probs=123.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++++|+++|++|||||||+++|+++.+....||++.....+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 57 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL-------------------------------------- 57 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEE--------------------------------------
Confidence 788999999999999999999998765544444443221111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+..+.+||+||++++..... .++..+|++++|+|++++.++.....++..++......+.
T Consensus 58 -----------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 120 (183)
T 1moz_A 58 -----------SYKNLKLNVWDLGGQTSIRPYWR------CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120 (183)
T ss_dssp -----------EETTEEEEEEEEC----CCTTGG------GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSC
T ss_pred -----------EECCEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCC
Confidence 11236789999999988777665 6678899999999999999999888888888765445789
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+....+++.+.+.... .....+++++|||++|.|+++++++|.+.+
T Consensus 121 piilv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 121 ALLVFANKQDQPGALSASEVSKELNLVE------------LKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTTTT------------CCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 9999999999988767777776655332 122347899999999999999999998765
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.1e-28 Score=180.14 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=106.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
.+||+++|++|||||||+++|.+.......++.+.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR----------------------------------------- 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence 579999999999999999999866544333332221110
Q ss_pred ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
...+.+....+.+||++|++.+..... .++..+|++++|+|++++.++..+..++..+.......++|+
T Consensus 41 -----~~~~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 109 (166)
T 3q72_A 41 -----SIVVDGEEASLMVYDIWEQDGGRWLPG------HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI 109 (166)
T ss_dssp -----EEEETTEEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE
T ss_pred -----EEEECCEEEEEEEEECCCCccchhhhh------hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 011223345688999999998877777 667889999999999999999999888888876555568999
Q ss_pred EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+||+|+.+ ....++...+..... .+++++||++|.|+++++++|.+.+
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 110 ILVGNKSDLVRSREVSVDEGRACAVVFD-----------------CKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp EEEEECTTCCSSCCSCHHHHHHHHHHTT-----------------CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EEEEeccccccccccCHHHHHHHHHHhC-----------------CcEEEeccCCCCCHHHHHHHHHHHH
Confidence 99999999975 455666666666655 7899999999999999999998865
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=181.53 Aligned_cols=165 Identities=27% Similarity=0.434 Sum_probs=126.0
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCC--CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDR--LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
...+.++|+++|++|||||||+++|++.. .....+|.+.....+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~---------------------------------- 62 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF---------------------------------- 62 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEE----------------------------------
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEE----------------------------------
Confidence 45678899999999999999999998776 223344444222111
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+..+.+||+||++++..... .++..+|++++|+|++++.++..+..++..++....
T Consensus 63 ---------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 63 ---------------KSSSLSFTVFDMSGQGRYRNLWE------HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 121 (190)
T ss_dssp ---------------ECSSCEEEEEEECCSTTTGGGGG------GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTT
T ss_pred ---------------EECCEEEEEEECCCCHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChh
Confidence 11135789999999998877766 677889999999999999999998888888876544
Q ss_pred C--CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 L--ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
. .+.|+++|+||+|+.+....+++.+.+.... .....+++++|||++|.|+++++++|.+.+
T Consensus 122 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 122 IKHRRIPILFFANKMDLRDAVTSVKVSQLLCLEN------------IKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred hccCCCeEEEEEeCcCcccCCCHHHHHHHhChhh------------ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 4 5799999999999988777777777664221 112347899999999999999999998876
No 16
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=1.4e-28 Score=179.75 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=124.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
|++++|+++|++|||||||+++|.+..+. ...||.+.....
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 42 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-------------------------------------- 42 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE--------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEE--------------------------------------
Confidence 46789999999999999999999987654 223333211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 43 --------~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 108 (167)
T 1c1y_A 43 --------QVEVDCQQCMLEILDTAGTEQFTAMRD------LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108 (167)
T ss_dssp --------EEESSSCEEEEEEEEECSSCSSTTHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred --------EEEECCEEEEEEEEECCChHHHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCC
Confidence 011223345689999999988877766 566789999999999999999988888877766544568
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ..+++++||++|.|+++++++|.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWC----------------NCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT----------------SCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEEECccccccccCCHHHHHHHHHHcc----------------CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999965 345667777666542 27899999999999999999998875
No 17
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.5e-28 Score=184.80 Aligned_cols=165 Identities=27% Similarity=0.420 Sum_probs=124.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCC--CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
...+++|+|+|++|||||||+++|++..+... .||++.....+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----------------------------------- 58 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----------------------------------- 58 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE-----------------------------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE-----------------------------------
Confidence 35678999999999999999999998776542 45554221111
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
......+.+|||||++.+..... .++..+|++++|+|++++.+|..+..++..++.....
T Consensus 59 --------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~ 118 (199)
T 4bas_A 59 --------------EKGRVAFTVFDMGGAKKFRGLWE------TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDI 118 (199)
T ss_dssp --------------EETTEEEEEEEECCSGGGGGGGG------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHH
T ss_pred --------------EeCCEEEEEEECCCCHhHHHHHH------HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhh
Confidence 23346799999999998887777 6778999999999999999999988888888654221
Q ss_pred -------CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 -------ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 -------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+......+++.+.+..... .....+++++|||++|.|+++++++|.+.+
T Consensus 119 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 119 RRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-----------MGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH-----------HTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh-----------ccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 28999999999999887777777666543210 011347999999999999999999998764
No 18
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=3.6e-28 Score=177.54 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=122.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+++++|+++|++|||||||+++|.+..+. ...+|.+.....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 43 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-------------------------------------- 43 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE--------------------------------------
Confidence 57889999999999999999999987654 222222211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 44 --------~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 109 (168)
T 1u8z_A 44 --------KVVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109 (168)
T ss_dssp --------EEEETTEEEEEEEEECCC---CHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred --------EEEECCEEEEEEEEECCCcchhHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 011122334688999999988877766 566789999999999999999988888888776554468
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++++... ++++++||++|.|+++++++|.+.+
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-----------------VNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp SCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 99999999999965 456677777777665 7899999999999999999998765
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=6e-28 Score=179.13 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=127.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++||+++|++|||||||+++|++..+. ...+|.+......
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------ 58 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKH------------------------------------ 58 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE------------------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEE------------------------------------
Confidence 356789999999999999999999976554 3333333211000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
....+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......
T Consensus 59 ----------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 122 (183)
T 3kkq_A 59 ----------TEIDNQWAILDVLDTAGQEEFSAMRE------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE 122 (183)
T ss_dssp ----------EEETTEEEEEEEEECCSCGGGCSSHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS
T ss_pred ----------EEeCCcEEEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11122334577899999998887776 56778999999999999999999888888876655557
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-cccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-MRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+ ....++..++.+... ++++++||+ +|.|+++++++|.+.+
T Consensus 123 ~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 123 SFPMILVANKVDLMHLRKVTRDQGKEMATKYN-----------------IPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-----------------CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCchhccCcCHHHHHHHHHHhC-----------------CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 899999999999975 566777888887766 789999999 9999999999998865
No 20
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=6e-28 Score=177.72 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=111.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++++|+++|++|||||||+++|++..+....++.+......
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 43 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYER-------------------------------------- 43 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEE--------------------------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEE--------------------------------------
Confidence 467899999999999999999999876654333333211111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++.+ ..... .++..+|++++|+|++++.++..+..++..+.......
T Consensus 44 -------~~~~~~~~~~~~~~D~~g~~~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~ 110 (175)
T 2nzj_A 44 -------TLTVDGEDTTLVVVDTWEAEKLDKSWSQE------SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQAD 110 (175)
T ss_dssp -------EEEETTEEEEEEEECCC-------CHHHH------HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC---
T ss_pred -------EEEECCEEEEEEEEecCCCCccchhhhHH------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccC
Confidence 0112223456889999998763 33333 45677999999999999999998887777776543345
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+.+ ....++...+..... ++++++||++|.|+++++++|.+.+
T Consensus 111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREVSVEEGRACAVVFD-----------------CKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-----------------SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhccccccCHHHHHHHHHHcC-----------------CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999999999975 345566666665554 7899999999999999999998765
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=4.4e-28 Score=179.54 Aligned_cols=161 Identities=22% Similarity=0.216 Sum_probs=124.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 46 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL------------------------------------- 46 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE-------------------------------------
Confidence 46789999999999999999999976654 3334433222110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++.++.......+
T Consensus 47 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (181)
T 3t5g_A 47 ---------ITVNGQEYHLQLVDTAGQDEYSIFPQ------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 111 (181)
T ss_dssp ---------EEETTEEEEEEEEECCCCCTTCCCCG------GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----
T ss_pred ---------EEECCEEEEEEEEeCCCchhhhHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 11122345688999999998876666 667889999999999999999998888888876655568
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 112 IPIMLVGNKKDLHMERVISYEEGKALAESWN-----------------AAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccchhcceecHHHHHHHHHHhC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999964 456777888777766 7899999999999999999998764
No 22
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=3.1e-28 Score=177.70 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=123.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
|++.+|+++|++|||||||+++|.++.+. ...+|.+....
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 41 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR--------------------------------------- 41 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---------------------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE---------------------------------------
Confidence 46789999999999999999999987654 22222221100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
....+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 42 -------~~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 108 (167)
T 1kao_A 42 -------KEIEVDSSPSVLEILDTAGTEQFASMRD------LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108 (167)
T ss_dssp -------EEEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred -------EEEEECCEEEEEEEEECCCchhhHHHHH------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 0011223345688999999988877766 556789999999999999999988888888776554568
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ +...++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 109 VPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCcccccccCCHHHHHHHHHHhC-----------------CCEEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999864 445666677666655 6899999999999999999998765
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=7.3e-28 Score=176.28 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=125.9
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
|..+++++|+++|++|||||||+++|++..+.. ..++.+......
T Consensus 1 g~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------- 46 (170)
T 1r2q_A 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ---------------------------------- 46 (170)
T ss_dssp CCEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE----------------------------------
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE----------------------------------
Confidence 456788999999999999999999999876542 333333222111
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+......+.+||+||++++..... .++..+|++++|+|++++.++..+..++..+... .
T Consensus 47 -----------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~ 108 (170)
T 1r2q_A 47 -----------TVCLDDTTVKFEIWDTAGQERYHSLAP------MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-A 108 (170)
T ss_dssp -----------EEEETTEEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred -----------EEEECCEEEEEEEEeCCCcHHhhhhhH------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence 011122345689999999998877766 5678899999999999999998888787777544 2
Q ss_pred CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 109 SPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-----------------LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CCCCcEEEEEECccCccccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35799999999999964 345667777666544 7899999999999999999998875
No 24
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=1.2e-27 Score=178.25 Aligned_cols=161 Identities=19% Similarity=0.298 Sum_probs=122.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+++|++|||||||+++|++..+.. ..+|.......
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 43 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-------------------------------------- 43 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEE--------------------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEE--------------------------------------
Confidence 568899999999999999999999876542 22222110000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 44 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 109 (189)
T 4dsu_A 44 --------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109 (189)
T ss_dssp --------EEEETTEEEEEEEEECCCC---CTTHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred --------EEEECCcEEEEEEEECCCcHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 011223345688999999998888777 666789999999999999999998888888776555568
Q ss_pred CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. ....++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 110 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 110 VPMVLVGNKCDLPSRTVDTKQAQDLARSYG-----------------IPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CCEEEEEECTTSSSCSSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECccCcccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999975 445667777777665 7899999999999999999998765
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=1.4e-27 Score=174.92 Aligned_cols=163 Identities=21% Similarity=0.211 Sum_probs=118.5
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
...++++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~----------------------------------- 46 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK----------------------------------- 46 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE-----------------------------------
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEE-----------------------------------
Confidence 3467889999999999999999999987654 3334443222111
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ..
T Consensus 47 ----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~ 109 (170)
T 1z08_A 47 ----------KLNIGGKRVNLAIWDTAGQERFHALGP------IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM-LG 109 (170)
T ss_dssp ----------EEESSSCEEEEEEEECCCC-------C------CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-HG
T ss_pred ----------EEEECCEEEEEEEEECCCcHhhhhhHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cC
Confidence 011122345689999999988876666 6678899999999999999998888777765432 22
Q ss_pred CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+.+ ....++..++.+... .+++++||++|.|+++++++|.+.+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVG-----------------AKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 5799999999999975 456677777777655 7899999999999999999998764
No 26
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=181.46 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=122.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.+||+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 64 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKI------------------------------------- 64 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEE-------------------------------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEE-------------------------------------
Confidence 46789999999999999999999987765 2223332111000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 65 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 129 (201)
T 3oes_A 65 ---------VTLGKDEFHLHLVDTAGQDEYSILPY------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129 (201)
T ss_dssp ---------EC----CEEEEEEEECCCCTTCCCCG------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----C
T ss_pred ---------EEECCEEEEEEEEECCCccchHHHHH------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 11223345689999999988877766 677889999999999999999999888888876544568
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+++|+||+|+.. .....+...+.+... ++++++||++|.|++++|++|.+.+
T Consensus 130 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWG-----------------ATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccCccccccCHHHHHHHHHHhC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999964 455677777777666 7899999999999999999998765
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=1.4e-27 Score=176.66 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=123.6
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+.++|+++|++|||||||+++|++..+. ...+|.+.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 48 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTK------------------------------------- 48 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEE-------------------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEE-------------------------------------
Confidence 356789999999999999999999987544 222232211110
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..++.+++......
T Consensus 49 ---------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 113 (181)
T 2fn4_A 49 ---------ICSVDGIPARLDILDTAGQEEFGAMRE------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD 113 (181)
T ss_dssp ---------EEEETTEEEEEEEEECCCTTTTSCCHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS
T ss_pred ---------EEEECCEEEEEEEEECCCchhhHHHHH------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 011122335688999999988877766 55678999999999999999998888888886655557
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+ ....++...+..... ++++++||++|.|+++++++|.+.+
T Consensus 114 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 114 DFPVVLVGNKADLESQRQVPRSEASAFGASHH-----------------VAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 899999999999975 445666666665544 7899999999999999999998764
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=3.3e-27 Score=172.83 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=124.5
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
-.+++++|+++|++|||||||+++|.+..+. ...|+.+......
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------- 46 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK----------------------------------- 46 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE-----------------------------------
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE-----------------------------------
Confidence 3467899999999999999999999987754 3334443222111
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+......+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.. ...
T Consensus 47 ----------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~ 109 (170)
T 1z0j_A 47 ----------TVQYQNELHKFLIWDTAGLERFRALAP------MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-HGP 109 (170)
T ss_dssp ----------EEEETTEEEEEEEEEECCSGGGGGGTH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HSC
T ss_pred ----------EEEECCeEEEEEEEcCCCchhhhcccH------hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCC
Confidence 011123345688999999988877666 567889999999999999999888777766654 334
Q ss_pred CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...|+++|+||+|+.+ +...++...+.+... .+++++||++|.|+++++++|.+.+
T Consensus 110 ~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 110 PSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-----------------AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCCcEEEEEECCccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 6899999999999975 345666666666554 7899999999999999999998875
No 29
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=1.7e-27 Score=177.06 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=124.0
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+++++|+++|++|||||||+++|.+..+.. ..+|.+.....
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 57 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK------------------------------------- 57 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE-------------------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE-------------------------------------
Confidence 3567899999999999999999999876542 22222211100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......
T Consensus 58 ---------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 122 (187)
T 2a9k_A 58 ---------KVVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 122 (187)
T ss_dssp ---------EEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred ---------EEEECCEEEEEEEEECCCCcccHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 001122234688999999988877766 56678999999999999999998888888877655556
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+.+ ....+++.++++... ++++++||++|.|+++++++|.+.+
T Consensus 123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 899999999999965 456677777777655 7899999999999999999998764
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=5.3e-27 Score=173.59 Aligned_cols=164 Identities=20% Similarity=0.209 Sum_probs=124.6
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
+-.+++++|+++|++|||||||+++|++..+.. ..++++......
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------- 52 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQ---------------------------------- 52 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEE----------------------------------
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEE----------------------------------
Confidence 345677899999999999999999999876552 233433222111
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+......+.+||+||++++..... .++..+|++++|+|++++.++.....++..+... .
T Consensus 53 -----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~ 114 (181)
T 2efe_B 53 -----------TLAVNDATVKFEIWDTAGQERYHSLAP------MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ-G 114 (181)
T ss_dssp -----------EEEETTEEEEEEEEECCCSGGGGGGTH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred -----------EEEECCEEEEEEEEeCCCChhhhhhhH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence 011122345689999999988877766 5678899999999999999998888788777654 2
Q ss_pred CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ ....+++.++.+... ++++++||++|.|+++++++|.+.+
T Consensus 115 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 115 NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-----------------LFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred CCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999965 345677777776655 7899999999999999999998865
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=3.1e-27 Score=172.93 Aligned_cols=161 Identities=20% Similarity=0.211 Sum_probs=123.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+++++|+++|++|||||||+++|.+..+. ...|+.+......
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 43 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ------------------------------------- 43 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE-------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-------------------------------------
Confidence 35789999999999999999999987654 3334443222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.... ..+
T Consensus 44 --------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 108 (170)
T 1ek0_A 44 --------RVTINEHTVKFEIWDTAGQERFASLAP------XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKD 108 (170)
T ss_dssp --------EEEETTEEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred --------EEEECCEEEEEEEEECCCChhhhhhhh------hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCC
Confidence 011122345689999999988877766 66788999999999999999998887777776542 368
Q ss_pred CcEEEEEecCCCCC-----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG-----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-----------------LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred CcEEEEEECCCccccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999964 345566666666555 7899999999999999999998875
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=3e-27 Score=176.34 Aligned_cols=167 Identities=19% Similarity=0.173 Sum_probs=122.0
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA 92 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~ 92 (249)
+-...++.++|+++|++|||||||+++|++..+. ...++.+......
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------- 60 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER-------------------------------- 60 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEE--------------------------------
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEE--------------------------------
Confidence 3445678899999999999999999999987665 2334433221111
Q ss_pred cccCCcccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 93 QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
...+.+....+.+||+||++++. .... .++..+|++++|+|++++.++..+..|+.++..
T Consensus 61 -------------~~~~~~~~~~~~l~Dt~G~~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 121 (189)
T 1z06_A 61 -------------AVDIDGERIKIQLWDTAGQERFRKSMVQ------HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121 (189)
T ss_dssp -------------EEEETTEEEEEEEEECCCSHHHHTTTHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred -------------EEEECCEEEEEEEEECCCchhhhhhhhH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 01112233568999999998876 5555 556789999999999999999998888888776
Q ss_pred ccCCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc---cchHHHHHHHhh
Q psy871 172 DESLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR---QGYGDGFRWLAN 246 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---~gv~~l~~~l~~ 246 (249)
.....+.|+++|+||+|+.+ ....++...+.+... ++++++||++| .|+++++++|.+
T Consensus 122 ~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 122 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-----------------MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp HCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred hcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-----------------CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 54457899999999999965 345666766666554 68999999999 999999999987
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
.+
T Consensus 185 ~i 186 (189)
T 1z06_A 185 KL 186 (189)
T ss_dssp --
T ss_pred HH
Confidence 65
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=3e-27 Score=176.81 Aligned_cols=172 Identities=22% Similarity=0.196 Sum_probs=127.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+++|++..+. ...||.+...... ..+.+.+.+..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~~-------------------- 62 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREK------RVVYRANGPDG-------------------- 62 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE------EEEECTTSCCC--------------------
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeE------EEEEecCCccc--------------------
Confidence 45689999999999999999999987764 3445554322200 00000000000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.........+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 63 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 127 (195)
T 3bc1_A 63 ---------AVGRGQRIHLQLWDTAGLERFRSLTT------AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127 (195)
T ss_dssp ---------SSCCCEEEEEEEEEECCSGGGHHHHH------HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSS
T ss_pred ---------ccccCcEEEEEEEeCCCcHHHHHHHH------HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 00112245789999999988877666 677889999999999999999988888888766544468
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....+++.++.+... ++++++||++|.|+++++++|.+.+
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYG-----------------IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999975 455677777776655 6899999999999999999998754
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.5e-27 Score=173.84 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=119.3
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
....++++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~--------------------------------- 51 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK--------------------------------- 51 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE---------------------------------
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE---------------------------------
Confidence 34577899999999999999999999987764 2333433222111
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+....
T Consensus 52 ------------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 113 (180)
T 2g6b_A 52 ------------VLDVDGVKVKLQMWDTAGQERFRSVTH------AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA 113 (180)
T ss_dssp ------------EEEETTEEEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred ------------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 001122345689999999988877666 67788999999999999999988887777765432
Q ss_pred CCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 114 -~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 114 -QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp -CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCCCcEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 26799999999999975 345667777666655 7899999999999999999998764
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.2e-27 Score=176.84 Aligned_cols=162 Identities=22% Similarity=0.232 Sum_probs=125.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+++++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 55 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK------------------------------------- 55 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE-------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEE-------------------------------------
Confidence 56789999999999999999999987754 3334443222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+......+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+.......+
T Consensus 56 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 121 (195)
T 1x3s_A 56 --------TISVDGNKAKLAIWDTAGQERFRTLTP------SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121 (195)
T ss_dssp --------EEEETTEEEEEEEEEECSSGGGCCSHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSC
T ss_pred --------EEEECCeEEEEEEEeCCCchhhhhhhH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC
Confidence 011123345789999999988877766 567889999999999999999988888888765444467
Q ss_pred CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 122 IVNMLVGNKIDKENREVDRNEGLKFARKHS-----------------MLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp CEEEEEEECTTSSSCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECCcCcccccCHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999965 345667777766654 7899999999999999999998754
No 36
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=178.33 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=124.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++.++|+|+|++|||||||+++|.+..+. ...+|.+.....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 53 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-------------------------------------- 53 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE--------------------------------------
Confidence 56789999999999999999999987654 222332211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 54 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 119 (206)
T 2bov_A 54 --------KVVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119 (206)
T ss_dssp --------EEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred --------EEEECCEEEEEEEEcCCChhhhHHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 011122234688999999988877766 566789999999999999999988888888776544468
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....+++.++.+... ++++++||++|.|+++++++|.+.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEeccCccccccccHHHHHHHHHHhC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999975 456777877777665 7899999999999999999998764
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=176.00 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=125.7
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..++++|+|+|++|+|||||+++|++..+. ...|+.+......
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------ 63 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK------------------------------------ 63 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE------------------------------------
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE------------------------------------
Confidence 356789999999999999999999987754 3444444322211
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+......+.+||+||++++..... .++..+|++++|+|++++.++..+..++..+... ...
T Consensus 64 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~ 127 (192)
T 2fg5_A 64 ---------TVPCGNELHKFLIWDTAGQERFHSLAP------MYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPE 127 (192)
T ss_dssp ---------EEECSSSEEEEEEEEECCSGGGGGGTH------HHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCT
T ss_pred ---------EEEeCCEEEEEEEEcCCCchhhHhhhH------HhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCC
Confidence 011122345689999999988877766 5678899999999999999999888777776543 235
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+ ....+++.++++... ++++++||++|.|+++++++|.+.+
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-----------------AIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-----------------CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 799999999999974 456677777776654 7899999999999999999998865
No 38
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=4.5e-27 Score=171.23 Aligned_cols=161 Identities=19% Similarity=0.276 Sum_probs=122.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
|++.+|+++|++|||||||+++|.+..+.. ..+|.+.....
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 42 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRK-------------------------------------- 42 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE--------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEE--------------------------------------
Confidence 467899999999999999999998876542 22222111000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.....+....+.+||+||++++..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 43 --------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~ 108 (166)
T 2ce2_X 43 --------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108 (166)
T ss_dssp --------EEEETTEEEEEEEEECCCCSSCCHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred --------EEEECCEEEEEEEEECCCchhhhHHHH------HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 011122345688999999988777666 566789999999999999999888877777765544458
Q ss_pred CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 109 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 109 VPMVLVGNKSDLAARTVESRQAQDLARSYG-----------------IPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEEchhhhhcccCHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999976 445667777776655 7899999999999999999998764
No 39
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=178.03 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=120.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...||++......
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 69 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMK------------------------------------- 69 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEE-------------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEE-------------------------------------
Confidence 45679999999999999999999887654 2333333211111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..|+..+.... ..+
T Consensus 70 --------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~ 134 (201)
T 2hup_A 70 --------TLEIQGKRVKLQIWDTAGQERFRTITQ------SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSN 134 (201)
T ss_dssp --------EEEETTEEEEEEEECCTTCGGGHHHHH------HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTT
T ss_pred --------EEEECCEEEEEEEEECCCcHhHHHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 011122335789999999998877766 66788999999999999999998887877775432 367
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+++|+||+|+.+ ....+++.++++... + ++++|||++|.|+++++++|.+.+
T Consensus 135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYD-----------------ILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECCccccccccCHHHHHHHHHHcC-----------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999975 456777777777655 5 899999999999999999998764
No 40
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=2.6e-27 Score=177.44 Aligned_cols=162 Identities=17% Similarity=0.232 Sum_probs=121.8
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
....+++||+++|++|+|||||+++|++..+. ...||.+......
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~---------------------------------- 63 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV---------------------------------- 63 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE----------------------------------
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE----------------------------------
Confidence 34567899999999999999999999987754 2333332111110
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhcc
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDE 173 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~ 173 (249)
..+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+ ..|+..+...
T Consensus 64 ------------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~- 124 (194)
T 3reg_A 64 ------------MKYKNEEFILHLWDTAGQEEYDRLRP------LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY- 124 (194)
T ss_dssp ------------EEETTEEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred ------------EEECCEEEEEEEEECCCcHHHHHHhH------hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 11223345689999999998887777 677889999999999999999886 4444444322
Q ss_pred CCCCCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCcee-EEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE-LFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ ....++..++.+... .+ ++++||++|.|+++++++|.+.+
T Consensus 125 -~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 125 -IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG-----------------CVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp -CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-----------------CSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-----------------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 35799999999999974 466778888777766 55 99999999999999999998764
No 41
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=3.3e-27 Score=177.08 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=121.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.+||+++|++|||||||++++.+.....+.++........ .. +.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~-----~~-----------------------------t~ 57 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATED-----ER-----------------------------TL 57 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSS-----CE-----------------------------EE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccccccccccccc-----cc-----------------------------ce
Confidence 567899999999999999998887654333222110000000 00 00
Q ss_pred ccceeceec-cccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC------ChhhhHhhHHHHHHHHh
Q psy871 99 HPTRRVWKD-YFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS------DRERFEESKSELQCLLT 171 (249)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~ 171 (249)
......... .+.+....+.+|||||++.+..... .++..+|++++|+|++ +..++..+..|+.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-- 129 (198)
T 3t1o_A 58 FFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK------LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-- 129 (198)
T ss_dssp EEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH------HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--
T ss_pred eeeecccccccccCCceEEEEEeCCChHHHHHHHH------HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--
Confidence 000000000 2234456799999999998888777 6778999999999999 455666666566555
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccchHHHHHHHhhhc
Q psy871 172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.....+.|+++|+||+|+.+....+++.++++... + +++++||++|.|+++++++|.+.+
T Consensus 130 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 130 GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-----------------KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC-----------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC-----------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 22346899999999999998888899988888665 5 899999999999999999998764
No 42
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=3.5e-27 Score=175.31 Aligned_cols=158 Identities=12% Similarity=0.122 Sum_probs=120.9
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
..++++||+++|++|||||||++++++..+.. ..||.+.....
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 59 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKE------------------------------------ 59 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEE------------------------------------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEE------------------------------------
Confidence 35778999999999999999999999877653 33332111000
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
..+.+....+.+|||+|++.+. ++..+|++++|+|++++.+|..+..|+..+......
T Consensus 60 -----------~~~~~~~~~l~i~Dt~G~~~~~-----------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 117 (184)
T 3ihw_A 60 -----------IVVDGQSYLLLIRDEGGPPELQ-----------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA 117 (184)
T ss_dssp -----------EEETTEEEEEEEEECSSSCCHH-----------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCG
T ss_pred -----------EEECCEEEEEEEEECCCChhhh-----------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 1112334568899999998775 345699999999999999999988888888655434
Q ss_pred CCCcEEEEEecCCCC----CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKH----GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+. .....++..++.+... ..++++|||++|.|++++|++|.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK----------------RCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT----------------TCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcC----------------CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 679999999999994 3456777777777653 26899999999999999999998764
No 43
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=2.9e-27 Score=172.80 Aligned_cols=160 Identities=20% Similarity=0.218 Sum_probs=123.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|.+..+. ...||.+......
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 45 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER------------------------------------- 45 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEE-------------------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEE-------------------------------------
Confidence 45789999999999999999999987654 3334433222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.... .+
T Consensus 46 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~ 109 (168)
T 1z2a_A 46 --------QIQVNDEDVRLMLWDTAGQEEFDAITK------AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GD 109 (168)
T ss_dssp --------EEEETTEEEEEEEECCTTGGGTTCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CS
T ss_pred --------EEEECCEEEEEEEEcCCCcHhHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CC
Confidence 011122345689999999988877666 56678999999999999999988887777775543 67
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....+++.++.+... .+++++||++|.|+++++++|.+.+
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-----------------LRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999965 445677777777665 7899999999999999999998764
No 44
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.6e-27 Score=176.51 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=123.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...+|++......
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 66 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK------------------------------------- 66 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEE-------------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEE-------------------------------------
Confidence 45689999999999999999999987665 3334443221111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus 67 --------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~ 131 (201)
T 2ew1_A 67 --------TVEINGEKVKLQIWDTAGQERFRSITQ------SYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNK 131 (201)
T ss_dssp --------EEEETTEEEEEEEEEECCSGGGHHHHG------GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCEEEEEEEEECCCcHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence 001122345689999999988877666 6778899999999999999999888787776543 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... +++++|||++|.|+++++++|.+.+
T Consensus 132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQD-----------------MYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999974 445677777666554 7899999999999999999998764
No 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=9.4e-27 Score=171.92 Aligned_cols=157 Identities=12% Similarity=0.116 Sum_probs=116.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++++||+++|++|||||||+++|++..+....||.+......
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~-------------------------------------- 46 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE-------------------------------------- 46 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEE--------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEE--------------------------------------
Confidence 567899999999999999999999887765555544211100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh--ccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT--DESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~ 176 (249)
..+.+....+.+||++|+++. .++..+|++++|+|++++.++..+..|+..+.. .....
T Consensus 47 --------~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 107 (178)
T 2iwr_A 47 --------MLVDGQTHLVLIREEAGAPDA-----------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG 107 (178)
T ss_dssp --------EEETTEEEEEEEEECSSSCCH-----------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred --------EEECCEEEEEEEEECCCCchh-----------HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 011223356889999998762 345679999999999999999988876444322 22235
Q ss_pred CCcEEEEEecCCCC----CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKH----GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+. .....++..++.+... ..+++++||++|.|++++|++|.+.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 108 GLALALVGTQDRISASSPRVVGDARARALXADMK----------------RCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp CCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS----------------SEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCCEEEEEECccccccccCcCCHHHHHHHHHhhc----------------CCeEEEEeccccCCHHHHHHHHHHHH
Confidence 79999999999994 2456677777666542 27899999999999999999998764
No 46
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=3.9e-27 Score=172.42 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=113.7
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.+||+++|++|||||||+++|++..... ..++.... ..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~--------------------------------------- 40 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSED--TY--------------------------------------- 40 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------C--EE---------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCC--ee---------------------------------------
Confidence 3689999999999999999998654431 11111100 00
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
.. ...+.+....+.+||++|++.+.. ... .++..+|++++|+|++++.++..+..++.++.......++
T Consensus 41 --~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 110 (169)
T 3q85_A 41 --ER--RIMVDKEEVTLIVYDIWEQGDAGGWLQD------HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 110 (169)
T ss_dssp --EE--EEEETTEEEEEEEECCCCC--------C------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred --eE--EEEECCeEEEEEEEECCCccccchhhhh------hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCC
Confidence 00 011223345688999999987765 333 3456799999999999999999998898888776544589
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 111 PVILVGNKSDLARSREVSLEEGRHLAGTLS-----------------CKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp CEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEeeCcchhhcccCCHHHHHHHHHHcC-----------------CcEEEecCccCCCHHHHHHHHHHHH
Confidence 9999999999973 566777777777665 7899999999999999999998865
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=4.9e-27 Score=173.35 Aligned_cols=164 Identities=21% Similarity=0.202 Sum_probs=123.1
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
+.++++++|+++|++|||||||+++|++..+. ...++.+......
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------- 54 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---------------------------------- 54 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE----------------------------------
Confidence 44678899999999999999999999977654 2233333211111
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+....
T Consensus 55 -----------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~- 116 (179)
T 2y8e_A 55 -----------TMYLEDRTVRLQLWDTAGQERFRSLIP------SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER- 116 (179)
T ss_dssp -----------EEEETTEEEEEEEEEECCSGGGGGGSH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-
T ss_pred -----------EEEECCeEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence 011122334689999999988877666 56678999999999999999988887877775432
Q ss_pred CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ ....++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35799999999999964 445667777666655 7899999999999999999998865
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=1.3e-26 Score=170.92 Aligned_cols=164 Identities=19% Similarity=0.185 Sum_probs=121.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+.++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------ 47 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK------------------------------------ 47 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEE------------------------------------
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEE------------------------------------
Confidence 456789999999999999999999887654 2233333211111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-- 174 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-- 174 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.....
T Consensus 48 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 112 (177)
T 1wms_A 48 ---------DLEVDGHFVTMQIWDTAGQERFRSLRT------PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK 112 (177)
T ss_dssp ---------EEEETTEEEEEEEEECCCCGGGHHHHG------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS
T ss_pred ---------EEEECCEEEEEEEEeCCCchhhhhhHH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHcccc
Confidence 011122335689999999988877666 677889999999999999999888777777654322
Q ss_pred -CCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 -LASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 -~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.. ....+++.++.+... ..+++++||++|.|+++++++|.+.+
T Consensus 113 ~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 113 EPESFPFVILGNKIDISERQVSTEEAQAWCRDNG----------------DYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTT----------------CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEECCcccccccCHHHHHHHHHhcC----------------CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 25789999999999964 456677777666322 27899999999999999999998764
No 49
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=192.01 Aligned_cols=163 Identities=26% Similarity=0.405 Sum_probs=123.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.++++|+|+|++|||||||+++|++..+....||++.....
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~--------------------------------------- 203 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--------------------------------------- 203 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEE---------------------------------------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEE---------------------------------------
Confidence 45679999999999999999999876654333333322111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+...+..+.+|||||++.+..... .++..+|++++|+|++++.++..+..++.+++......++
T Consensus 204 ----------~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 267 (329)
T 3o47_A 204 ----------VEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA 267 (329)
T ss_dssp ----------EEETTEEEEEEECC-----CCSHH------HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTC
T ss_pred ----------EecCcEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCC
Confidence 122345789999999998888777 6678899999999999999999988888888776555689
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.+....+++...+.... .....++++++||++|.|+++++++|.+.+
T Consensus 268 piilV~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 268 VLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHTCTT------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEEECccCCcccCHHHHHHHhchhh------------hhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999988777777766655332 223457999999999999999999999875
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=9.8e-27 Score=171.75 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=123.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...+|.+......
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 55 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR------------------------------------- 55 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEE-------------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE-------------------------------------
Confidence 45689999999999999999999987654 2233333221111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+......+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus 56 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~ 120 (179)
T 1z0f_A 56 --------IIEVSGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPN 120 (179)
T ss_dssp --------EEEETTEEEEEEEEECTTGGGTCHHHH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCeEEEEEEEECCCChHhhhhHH------HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011123345689999999988877666 6678899999999999999998888777766543 3357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....+++.++++... ++++++||++|.|+++++++|.+.+
T Consensus 121 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENG-----------------LLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999964 455677777776655 7899999999999999999998765
No 51
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=7.9e-27 Score=198.56 Aligned_cols=167 Identities=26% Similarity=0.400 Sum_probs=134.3
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+..++.++|+++|.+|||||||+++|++.++....||++.....+
T Consensus 317 ~~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~----------------------------------- 361 (497)
T 3lvq_E 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV----------------------------------- 361 (497)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE-----------------------------------
T ss_pred cccccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEE-----------------------------------
Confidence 345678899999999999999999999988777777766544443
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+..+.+|||+|++.+...+. .++..+|++++|+|++++.++..+..++.+++.....
T Consensus 362 --------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~ 421 (497)
T 3lvq_E 362 --------------TYKNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM 421 (497)
T ss_dssp --------------ESSSCEEEEEEECCCGGGSGGGG------GGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGG
T ss_pred --------------EeCCEEEEEEECCCcHHHHHHHH------HHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhc
Confidence 11235689999999998887766 7788999999999999999999998888888776555
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
.++|+++|+||+|+.+....+++...+.... .....+++++|||++|.|+++++++|.+.++
T Consensus 422 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp TTCEEEEEEECCSSSSCCCHHHHHHHTTCTT------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred CCCcEEEEEECCCCCcCCCHHHHHHHhchhh------------hhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999988767777766554322 2224578999999999999999999998763
No 52
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=5.6e-27 Score=175.18 Aligned_cols=163 Identities=20% Similarity=0.182 Sum_probs=123.3
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
-..+.+||+|+|++|||||||+++|++..+.. ..+|.+......
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----------------------------------- 61 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR----------------------------------- 61 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEE-----------------------------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-----------------------------------
Confidence 34677899999999999999999999876542 223332221111
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ..
T Consensus 62 ----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~ 124 (191)
T 2a5j_A 62 ----------MVNIDGKQIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SS 124 (191)
T ss_dssp ----------EEEETTEEEEEEEECCTTGGGTSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SC
T ss_pred ----------EEEECCEEEEEEEEECCCchhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cC
Confidence 011122345689999999988877666 5677899999999999999999888777777543 23
Q ss_pred CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 125 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-----------------LIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999965 455677777776655 7899999999999999999998754
No 53
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=1e-26 Score=173.50 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=114.7
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+++++|+++|++|||||||+++|++..+.. ..+|.+.....
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 60 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK------------------------------------- 60 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE-------------------------------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEE-------------------------------------
Confidence 3678999999999999999999999776542 12222110000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|+++..++..+..++..+.......
T Consensus 61 ---------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 125 (190)
T 3con_A 61 ---------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSD 125 (190)
T ss_dssp ---------EEEETTEEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ---------EEEECCEEEEEEEEECCChHHHHHHHH------HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC
Confidence 011122345688999999988777666 66788999999999999999988877777765544345
Q ss_pred CCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.. ....+++.++.+... ++++++||++|.|+++++++|.+.+
T Consensus 126 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 126 DVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-----------------IPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCcCCcccCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999976 456677777777665 6899999999999999999998764
No 54
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.5e-27 Score=171.20 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=118.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 43 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-------------------------------------- 43 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--------------------------------------
Confidence 4679999999999999999999987654 2333332111110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~ 177 (249)
.........+.+||+||++++..... .++..+|++++|+|++++.++.....++..+.... ...+
T Consensus 44 --------~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 109 (172)
T 2erx_A 44 --------ISCDKSICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES 109 (172)
T ss_dssp --------EEETTEEEEEEEEECCSCSSCHHHHH------HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---C
T ss_pred --------EEECCEEEEEEEEECCCchhhHHHHH------HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 01122234688999999988877666 55677999999999999999988877776665432 2247
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. .....+...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 110 ~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 110 IPIMLVGNKCDESPSREVQSSEAEALARTWK-----------------CAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCEEEEEEccccccccccCHHHHHHHHHHhC-----------------CeEEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999965 344556666666554 7899999999999999999998865
No 55
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=3.8e-27 Score=179.25 Aligned_cols=160 Identities=21% Similarity=0.149 Sum_probs=122.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.++.+||+|+|++|||||||+++|++..+. ...||.+......
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------ 67 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC------------------------------------ 67 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE------------------------------------
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEE------------------------------------
Confidence 356789999999999999999999987765 2344443221100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~ 175 (249)
..+.+....+.+||++|++++..... .++..+|++++|+|++++.++.. +..|+..+... .
T Consensus 68 ----------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~ 129 (214)
T 3q3j_B 68 ----------LETEEQRVELSLWDTSGSPYYDNVRP------LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--C 129 (214)
T ss_dssp ----------EEC--CEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--C
T ss_pred ----------EEECCEEEEEEEEECCCCHhHHHHHH------HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--C
Confidence 11223345789999999998887777 67788999999999999999988 56666666443 2
Q ss_pred CCCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccc-hHH
Q psy871 176 ASCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQG-YGD 239 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g-v~~ 239 (249)
.+.|+++|+||+|+.+ ....++..++.+... + ++++|||++|.| +++
T Consensus 130 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 130 PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG-----------------AEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-----------------CSEEEECCTTTCHHHHHH
T ss_pred CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-----------------CCEEEEeccCCCcccHHH
Confidence 5899999999999964 466777888777766 6 899999999998 999
Q ss_pred HHHHHhhhc
Q psy871 240 GFRWLANYI 248 (249)
Q Consensus 240 l~~~l~~~i 248 (249)
+|++|.+.+
T Consensus 193 lf~~l~~~~ 201 (214)
T 3q3j_B 193 IFRTASMLC 201 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 56
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=7.6e-27 Score=175.04 Aligned_cols=162 Identities=17% Similarity=0.143 Sum_probs=118.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.+||+++|++|||||||+++|++.... ...|+.+......
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 63 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYER------------------------------------- 63 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEE-------------------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEE-------------------------------------
Confidence 45679999999999999999999754322 1112211100000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||++|++.+.. ... .++..+|++++|+|++++.+|..+..|+.++.......
T Consensus 64 --------~~~~~~~~~~l~i~Dt~g~~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 129 (195)
T 3cbq_A 64 --------RIMVDKEEVTLVVYDIWEQGDAGGWLRD------HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129 (195)
T ss_dssp --------EEEETTEEEEEEEECCCCCSGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS
T ss_pred --------EEEECCEEEEEEEEecCCCccchhhhHH------HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 011223345688999999987654 333 34567999999999999999999988888876544335
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+.+ ....++..++.+... .++++|||++|.|++++|++|.+.+
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLS-----------------CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeechhccccCCcCHHHHHHHHHHhC-----------------CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 899999999999975 355677777666554 6899999999999999999998765
No 57
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=1.2e-26 Score=173.07 Aligned_cols=161 Identities=23% Similarity=0.256 Sum_probs=123.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
...++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 62 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK------------------------------------- 62 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEE-------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEE-------------------------------------
Confidence 45689999999999999999999987764 2334433222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..........+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus 63 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~ 127 (189)
T 2gf9_A 63 --------TVYRHDKRIKLQIWDTAGQERYRTITT------AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDN 127 (189)
T ss_dssp --------EEEETTEEEEEEEEECCSCCSSCCSGG------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCeEEEEEEEeCCCcHHHhhhHH------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011122345689999999988877766 6778899999999999999998888777776543 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+..+ ++++++||++|.|+++++++|.+.+
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLG-----------------FEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999975 345667777777665 7899999999999999999998764
No 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=8.1e-27 Score=170.78 Aligned_cols=160 Identities=20% Similarity=0.231 Sum_probs=118.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 43 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK-------------------------------------- 43 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEE--------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEE--------------------------------------
Confidence 3579999999999999999999987654 2223332111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...+.
T Consensus 44 -------~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~ 109 (170)
T 1g16_A 44 -------TVDINGKKVKLQIWDTAGQERFRTITT------AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEA 109 (170)
T ss_dssp -------EEESSSCEEEEEEECCTTGGGTSCCCH------HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred -------EEEECCEEEEEEEEeCCCChhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCC
Confidence 011223345689999999988876665 5667899999999999999998888777776543 23579
Q ss_pred cEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.. ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 110 QLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp EEEEEEECTTCTTCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEEECccCCcCccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999954 445667777766655 7899999999999999999998764
No 59
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=173.64 Aligned_cols=161 Identities=23% Similarity=0.235 Sum_probs=123.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
...++|+++|++|||||||+++|++..+. ...++.+......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 56 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR------------------------------------- 56 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE-------------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE-------------------------------------
Confidence 35679999999999999999999987654 3333433222211
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus 57 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~ 121 (196)
T 3tkl_A 57 --------TIELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASEN 121 (196)
T ss_dssp --------EEEETTEEEEEEEEEECCSGGGCTTHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCEEEEEEEEECCCcHhhhhhHH------HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011122335689999999998887777 6678899999999999999999888777776443 3357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999975 345566777777665 7899999999999999999998765
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.7e-27 Score=172.32 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=122.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...|+.+......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 49 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR------------------------------------- 49 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEE-------------------------------------
Confidence 46789999999999999999999877654 2333333211111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ..+
T Consensus 50 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~ 113 (181)
T 3tw8_B 50 --------TVEINGEKVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDD 113 (181)
T ss_dssp --------EEEETTEEEEEEEEEETTGGGCSSCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTT
T ss_pred --------EEEECCEEEEEEEEcCCCchhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCC
Confidence 011122335689999999988877766 6778899999999999999999988888777543 257
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++...+..... ++++++||++|.|+++++++|.+.+
T Consensus 114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMG-----------------IQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchhcccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999865 345667777777665 7899999999999999999998764
No 61
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.5e-26 Score=173.21 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=119.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|+|||||+++|++..+. ...||.+.....
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 57 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-------------------------------------- 57 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEE--------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEE--------------------------------------
Confidence 46689999999999999999999987654 233333211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+. .|+..+... ..
T Consensus 58 --------~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 121 (194)
T 2atx_A 58 --------SVTVGGKQYLLGLYDTAGQEDYDRLRP------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--AP 121 (194)
T ss_dssp --------EEESSSCEEEEEEECCCCSSSSTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--ST
T ss_pred --------EEEECCEEEEEEEEECCCCcchhHHHH------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 001122335688999999998887766 6778899999999999999998876 565555432 24
Q ss_pred CCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 177 SCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
++|+++|+||+|+.+. ...++..++.+... ..++++|||++|.|++++++
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG----------------ACCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT----------------CSCEEECCTTTCTTHHHHHH
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC----------------CcEEEEeeCCCCCCHHHHHH
Confidence 8999999999999752 44555666555544 13899999999999999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
+|.+.+
T Consensus 186 ~l~~~i 191 (194)
T 2atx_A 186 EAIIAI 191 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 62
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=2e-26 Score=173.83 Aligned_cols=161 Identities=24% Similarity=0.256 Sum_probs=123.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
...++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 48 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK------------------------------------- 48 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEE-------------------------------------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEE-------------------------------------
Confidence 35679999999999999999999987764 3334443222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+......+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus 49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~ 113 (203)
T 1zbd_A 49 --------TIYRNDKRIKLQIWDTAGLERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDN 113 (203)
T ss_dssp --------EEEETTEEEEEEEEEECCSGGGHHHHH------TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSS
T ss_pred --------EEEECCeEEEEEEEECCCchhhcchHH------HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011122345689999999988877666 6778999999999999999998888777776443 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 114 AQVLLVGNKCDMEDERVVSSERGRQLADHLG-----------------FEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp CEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEECcccCcccccCHHHHHHHHHHCC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999976 345667777777665 7899999999999999999998754
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.1e-27 Score=175.34 Aligned_cols=160 Identities=20% Similarity=0.234 Sum_probs=121.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+++|++|||||||+++|++..+. ...||.+.....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 67 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-------------------------------------- 67 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE--------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEE--------------------------------------
Confidence 56789999999999999999999987654 233333311100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++. ..... .++..+|++++|+|++++.++..+..++..+.......+
T Consensus 68 --------~~~~~~~~~~~~l~Dt~G~~~-~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~ 132 (196)
T 2atv_A 68 --------QATIDDEVVSMEILDTAGQED-TIQRE------GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 132 (196)
T ss_dssp --------EEEETTEEEEEEEEECCCCCC-CHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSC
T ss_pred --------EEEECCEEEEEEEEECCCCCc-ccchh------hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCC
Confidence 011122345688999999886 33333 556789999999999999999988877777765444468
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc-chHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ-GYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~i 248 (249)
+|+++|+||+|+.+ ....++..++.+... +++++|||++|. |+++++++|.+.+
T Consensus 133 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 133 VTLILVGNKADLDHSRQVSTEEGEKLATELA-----------------CAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHhC-----------------CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 99999999999975 455677777776655 789999999999 9999999998764
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=1.4e-26 Score=174.45 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=116.8
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
.++...++||+++|++|||||||+++|.+..+. ...||.+......
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------- 65 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD--------------------------------- 65 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE---------------------------------
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE---------------------------------
Confidence 456677899999999999999999999987654 2233332111000
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTD 172 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~ 172 (249)
..+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+. .++..+ ..
T Consensus 66 -------------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~ 125 (201)
T 2gco_A 66 -------------IEVDGKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KH 125 (201)
T ss_dssp -------------EEETTEEEEEEEECCCCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH-HH
T ss_pred -------------EEECCEEEEEEEEECCCchhHHHHHH------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH-HH
Confidence 01122345689999999998877766 6778899999999999999998874 444444 32
Q ss_pred cCCCCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871 173 ESLASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
. ..+.|+++|+||+|+... ...++..++.+... ..++++|||++|.|++
T Consensus 126 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~ 188 (201)
T 2gco_A 126 F-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS----------------AFGYLECSAKTKEGVR 188 (201)
T ss_dssp H-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHH
T ss_pred h-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC----------------CcEEEEeeCCCCCCHH
Confidence 2 258999999999999764 23334444444433 1389999999999999
Q ss_pred HHHHHHhhhc
Q psy871 239 DGFRWLANYI 248 (249)
Q Consensus 239 ~l~~~l~~~i 248 (249)
+++++|.+.+
T Consensus 189 ~l~~~i~~~~ 198 (201)
T 2gco_A 189 EVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 65
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.7e-26 Score=174.53 Aligned_cols=161 Identities=22% Similarity=0.246 Sum_probs=123.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+++|++..+. ...||.+......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 48 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK------------------------------------- 48 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-------------------------------------
Confidence 45689999999999999999999987765 2334433222111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus 49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~ 113 (206)
T 2bcg_Y 49 --------TVELDGKTVKLQIWDTAGQERFRTITS------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATST 113 (206)
T ss_dssp --------EEEETTEEEEEEEECCTTTTTTTCCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCEEEEEEEEeCCChHHHHHHHH------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011122345689999999988877766 6778899999999999999999888777776543 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANK-----------------MPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999976 345666766666544 7899999999999999999998764
No 66
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=1.4e-26 Score=172.13 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=122.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...++.+......
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 50 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK------------------------------------- 50 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE-------------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE-------------------------------------
Confidence 45789999999999999999999987665 2333332111111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus 51 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~ 115 (186)
T 2bme_A 51 --------IINVGGKYVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRETYNALTNWLTDARML-ASQN 115 (186)
T ss_dssp --------EEEETTEEEEEEEEEECCSGGGHHHHH------TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011122234688999999998877666 6778899999999999999999888777766443 2368
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. ....++..++.+... ++++++||++|.|++++++++.+.+
T Consensus 116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 116 IVIILCGNKKDLDADREVTFLEASRFAQENE-----------------LMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999964 455667777666554 7899999999999999999998754
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=9.5e-27 Score=172.93 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=116.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+++++|+++|++|||||||+++|++..+. ...+|.+.....
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 44 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA------------------------------------- 44 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEE-------------------------------------
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEE-------------------------------------
Confidence 467899999999999999999999987654 223333211100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 175 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++.... .++..+... .
T Consensus 45 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~ 107 (186)
T 1mh1_A 45 ---------NVMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH--C 107 (186)
T ss_dssp ---------EEEETTEEEEEEEECCCCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--S
T ss_pred ---------EEEECCEEEEEEEEECCCCHhHHHHHH------HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh--C
Confidence 011123345688999999998877666 5678899999999999999998876 455555332 2
Q ss_pred CCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871 176 ASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
.+.|+++|+||+|+.+. ...++..++.+... ..++++|||++|.|+++++
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 108 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHHHHH
T ss_pred CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC----------------CcEEEEecCCCccCHHHHH
Confidence 48999999999999653 23344444444333 1389999999999999999
Q ss_pred HHHhhhc
Q psy871 242 RWLANYI 248 (249)
Q Consensus 242 ~~l~~~i 248 (249)
++|.+.+
T Consensus 172 ~~l~~~~ 178 (186)
T 1mh1_A 172 DEAIRAV 178 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 68
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=174.42 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=119.0
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+..||+++|++|||||||+++|++..+. ...||.+.....
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 60 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSS------------------------------------- 60 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE-------------------------------------
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeE-------------------------------------
Confidence 456789999999999999999999987754 333443311100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-- 174 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-- 174 (249)
...+.+....+.+||++|++.+... . .++..+|++++|+|++++.++..+..|+..+.....
T Consensus 61 ---------~~~~~~~~~~l~i~Dt~G~~~~~~~-~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 124 (187)
T 3c5c_A 61 ---------EETVDHQPVHLRVMDTADLDTPRNC-E------RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKET 124 (187)
T ss_dssp ---------EEEETTEEEEEEEEECCC---CCCT-H------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------EEEECCEEEEEEEEECCCCCcchhH-H------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhcc
Confidence 0111233456889999999877653 2 356779999999999999999998888777754321
Q ss_pred CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee-ccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV-LMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+ ....++..++.+..+ +++++||| ++|.|+++++++|.+.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 125 QRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG-----------------CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-----------------CcEEEEeecCccccHHHHHHHHHHHH
Confidence 25799999999999964 456677888777766 78999999 89999999999998765
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=2.9e-26 Score=172.88 Aligned_cols=195 Identities=17% Similarity=0.171 Sum_probs=124.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+|+|++|||||||+++|++..+. ...||.+.......+........ ...+. ....-+..+... .
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-------~ 75 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIK-NNSNN-EKNNNINSINDD-------N 75 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccc-ccccc-cccccccccccc-------c
Confidence 35689999999999999999999998765 34455553332221110000000 00000 000000000000 0
Q ss_pred cccceece-eccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 98 LHPTRRVW-KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
........ ...-......+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~ 146 (208)
T 3clv_A 76 NVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVP------LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---S 146 (208)
T ss_dssp ---------CCCTTTCEEEEEEEECTTGGGCTTTHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---S
T ss_pred ccccccccccccCccceeEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---C
Confidence 00000000 000111236789999999988877766 6678899999999999999999888788777654 3
Q ss_pred CCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..|+++|+||+|+.. ....+++.++++... ++++++||++|.|+++++++|.+.+
T Consensus 147 ~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 147 NYIIILVANKIDKNKFQVDILEVQKYAQDNN-----------------LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCEEEEEEECTTCC-CCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCcccccCCHHHHHHHHHHcC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 499999999999432 456778888777655 7999999999999999999998764
No 70
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=4.5e-27 Score=173.52 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=121.2
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
-.+++++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~----------------------------------- 46 (178)
T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLR----------------------------------- 46 (178)
T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEE-----------------------------------
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEE-----------------------------------
Confidence 3567899999999999999999999876654 2223333111111
Q ss_pred CCcccceeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 96 PTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+.+ ....+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+.....
T Consensus 47 ----------~~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 110 (178)
T 2hxs_A 47 ----------RITLPGNLNVTLQIWDIGGQTIGGKMLD------KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE 110 (178)
T ss_dssp ----------EEEETTTEEEEEEEEECTTCCTTCTTHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH
T ss_pred ----------EEEeCCCCEEEEEEEECCCCccccchhh------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence 000111 235789999999998877766 567889999999999999999888777766643211
Q ss_pred -CCCCc-EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 -LASCP-VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 -~~~~p-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....| +++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 111 ~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 111 ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG-----------------FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC-----------------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12455 899999999975 355677777776655 7899999999999999999998764
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=174.94 Aligned_cols=161 Identities=18% Similarity=0.195 Sum_probs=115.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 68 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK------------------------------------- 68 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE-------------------------------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE-------------------------------------
Confidence 45789999999999999999999987654 2233333211111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+.. ....+
T Consensus 69 --------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~ 133 (199)
T 2p5s_A 69 --------TLIVDGERTVLQLWDTAGQERFRSIAK------SYFRKADGVLLLYDVTCEKSFLNIREWVDMIED-AAHET 133 (199)
T ss_dssp --------EEEETTEEEEEEEEECTTCTTCHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH-HC---
T ss_pred --------EEEECCEEEEEEEEECCCCcchhhhHH------HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH-hcCCC
Confidence 011223345689999999988877666 567789999999999999999988877766543 23357
Q ss_pred CcEEEEEecCCCC--------CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKH--------GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+. .....++..++.+... ++++++||++|.|+++++.+|.+.+
T Consensus 134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-----------------ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccccccccCHHHHHHHHHHcC-----------------CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999985 2345566666666555 7899999999999999999998865
No 72
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=2.7e-27 Score=175.62 Aligned_cols=161 Identities=22% Similarity=0.243 Sum_probs=96.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 48 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIR------------------------------------- 48 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEE-------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEE-------------------------------------
Confidence 35689999999999999999999865543 1122222111100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus 49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~ 113 (183)
T 2fu5_C 49 --------TIELDGKRIKLQIWDTAGQERFRTITT------AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASAD 113 (183)
T ss_dssp --------EEEETTEEEEEEEEEC---------CC------TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTT
T ss_pred --------EEEECCEEEEEEEEcCCCChhhhhhHH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011123345789999999988776655 6678899999999999999999888777776543 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYG-----------------IKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp CEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-----------------CEEEECCC---CCHHHHHHHHHHHH
T ss_pred CCEEEEEECccCCccCcCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999975 445677777777665 7899999999999999999998764
No 73
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.1e-26 Score=173.29 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=114.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+.+||+|+|.+|||||||++++++.... ...++.+......
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~------------------------------------ 78 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER------------------------------------ 78 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEE------------------------------------
Confidence 34579999999999999999999865432 2122222111000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+.+....+.+|||+|.+.. ..... .++..++++++|+|+++..+|..+..|+..+......
T Consensus 79 ---------~i~~~~~~~~l~~~Dt~g~~~~~~~l~~------~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~ 143 (211)
T 2g3y_A 79 ---------TLMVDGESATIILLDMWENKGENEWLHD------HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT 143 (211)
T ss_dssp ---------EEEETTEEEEEEEECCTTTTHHHHHHHH------CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred ---------EEEECCeeeEEEEeecCCCcchhhhHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 0112233446789999997763 22222 4567799999999999999999888777766543233
Q ss_pred CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+.+ ....++...+..... +++++|||++|.|++++|++|.+.+
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-----------------~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-----------------CKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799999999999964 445566555555544 7899999999999999999998764
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=173.02 Aligned_cols=162 Identities=19% Similarity=0.215 Sum_probs=123.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+.++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~------------------------------------ 65 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTR------------------------------------ 65 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEE------------------------------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE------------------------------------
Confidence 356789999999999999999999987765 2333333221111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+......+.+||+||++++..... .++..+|++++|+|++++.++..+..++..+... ...
T Consensus 66 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~ 129 (193)
T 2oil_A 66 ---------TVMLGTAAVKAQIWDTAGLERYRAITS------AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH-AEA 129 (193)
T ss_dssp ---------EEEETTEEEEEEEEEESCCCTTCTTHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCT
T ss_pred ---------EEEECCEEEEEEEEeCCCchhhhhhhH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCC
Confidence 011123345689999999988877766 5678899999999999999998888777777543 235
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.. ....++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 130 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 130 TIVVMLVGNKSDLSQAREVPTEEARMFAENNG-----------------LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999975 445667777666554 7899999999999999999998754
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=2.9e-26 Score=169.66 Aligned_cols=163 Identities=26% Similarity=0.272 Sum_probs=112.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...||.+.......
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------ 49 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKE------------------------------------ 49 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEE------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEE------------------------------------
Confidence 45789999999999999999999987654 23333332221110
Q ss_pred cccceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871 98 LHPTRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-- 174 (249)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-- 174 (249)
..+. .....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.....
T Consensus 50 ---------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 114 (182)
T 1ky3_A 50 ---------VTVDGDKVATMQVWDTAGQERFQSLGV------AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN 114 (182)
T ss_dssp ---------ECCSSSCCEEEEEECCC----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred ---------EEEcCCcEEEEEEEECCCChHhhhhhH------HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc
Confidence 0111 2245689999999988877666 677889999999999999999988878777754332
Q ss_pred -CCCCcEEEEEecCCCCC---CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 -LASCPVLILGNKIDKHG---AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 -~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.. ....++..++.+... ..+++++||++|.|+++++++|.+.+
T Consensus 115 ~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 115 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG----------------DIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT----------------SCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC----------------CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 25789999999999954 235666666665321 27899999999999999999998754
No 76
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=175.80 Aligned_cols=162 Identities=22% Similarity=0.255 Sum_probs=124.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
....+||+|+|++|||||||+++|++..+. ...++.+......
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------ 63 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVK------------------------------------ 63 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEE------------------------------------
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEE------------------------------------
Confidence 356789999999999999999999876654 2222222111111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..........+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+.. ....
T Consensus 64 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~ 127 (191)
T 3dz8_A 64 ---------TVYRHEKRVKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWATQIKT-YSWD 127 (191)
T ss_dssp ---------EEEETTTTEEEEEECHHHHHHCHHHHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH-HSCT
T ss_pred ---------EEEECCEEEEEEEEeCCChHHHHHHHH------HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH-hcCC
Confidence 111233456799999999988877766 667889999999999999999988877777654 3346
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+ ....++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-----------------FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999965 456677777777666 7899999999999999999998764
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=7.6e-27 Score=176.30 Aligned_cols=168 Identities=15% Similarity=0.194 Sum_probs=115.5
Q ss_pred hhcccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcC
Q psy871 11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 89 (249)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~ 89 (249)
.+.-+...++++||+++|++|||||||+++|+...+. ...+|.+.....
T Consensus 20 ~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~------------------------------ 69 (204)
T 4gzl_A 20 HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA------------------------------ 69 (204)
T ss_dssp ----------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEE------------------------------
T ss_pred HHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEE------------------------------
Confidence 3344556688999999999999999999999977654 223333211000
Q ss_pred CcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHH
Q psy871 90 RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQC 168 (249)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~ 168 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+. .++..
T Consensus 70 ----------------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 127 (204)
T 4gzl_A 70 ----------------NVMVDGKPVNLGLWDTAGLEDYDRLRP------LSYPQTDVFLICFSLVSPASFENVRAKWYPE 127 (204)
T ss_dssp ----------------EEECC-CEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHH
T ss_pred ----------------EEEECCEEEEEEEEECCCchhhHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 011223345677999999998887776 6778999999999999999998886 45555
Q ss_pred HHhccCCCCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871 169 LLTDESLASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234 (249)
Q Consensus 169 ~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 234 (249)
+... . .+.|+++|+||+|+.+. ...++...+.+... ..++++|||++|
T Consensus 128 ~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g 189 (204)
T 4gzl_A 128 VRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQ 189 (204)
T ss_dssp HHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTC
T ss_pred HHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC----------------CcEEEEeeCCCC
Confidence 4332 2 68999999999999763 33344444444433 246999999999
Q ss_pred cchHHHHHHHhhhc
Q psy871 235 QGYGDGFRWLANYI 248 (249)
Q Consensus 235 ~gv~~l~~~l~~~i 248 (249)
.|+++++++|.+.+
T Consensus 190 ~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 190 RGLKTVFDEAIRAV 203 (204)
T ss_dssp TTHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-26 Score=173.18 Aligned_cols=161 Identities=14% Similarity=0.228 Sum_probs=120.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...||.+......
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 48 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV------------------------------------- 48 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEE-------------------------------------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEE-------------------------------------
Confidence 45689999999999999999999987654 2333333111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC-CC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-LA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~ 176 (249)
.........+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+..... ..
T Consensus 49 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (199)
T 2gf0_A 49 ---------ISCDKSVCTLQITDTTGSHQFPAMQR------LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE 113 (199)
T ss_dssp ---------EEETTEEEEEEEEECCGGGSCHHHHH------HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGG
T ss_pred ---------EEECCEEEEEEEEeCCChHHhHHHHH------HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCC
Confidence 01122344688999999988877666 556789999999999999999888776655543221 24
Q ss_pred CCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.. ....++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 114 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 114 DIPVMLVGNKCDETQREVDTREAQAVAQEWK-----------------CAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp GSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCCEEEEEECccCCccccCHHHHHHHHHHhC-----------------CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 789999999999976 345666666666655 7899999999999999999998765
No 79
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=172.83 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=117.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+++|++|||||||+++|++..+. ...+|.+......
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 66 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK------------------------------------- 66 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEE-------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEE-------------------------------------
Confidence 45679999999999999999999876654 2233333211111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+. .....+
T Consensus 67 --------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~-~~~~~~ 131 (192)
T 2il1_A 67 --------TVELRGKKIRLQIWDTAGQERFNSITS------AYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASED 131 (192)
T ss_dssp --------EEEETTEEEEEEEEEECCSGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH-HHSCTT
T ss_pred --------EEEECCeEEEEEEEeCCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH-HhcCCC
Confidence 011122345689999999988877666 56678999999999999999988876665553 333457
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++..++.+... ..+++++||++|.|+++++++|.+.+
T Consensus 132 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 132 AELLLVGNKLDCETDREITRQQGEKFAQQIT----------------GMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHTST----------------TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHhcC----------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999965 345566666665431 27899999999999999999998764
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=174.87 Aligned_cols=162 Identities=20% Similarity=0.186 Sum_probs=117.8
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+.++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~------------------------------------ 65 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSR------------------------------------ 65 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEE------------------------------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEE------------------------------------
Confidence 356789999999999999999999876654 2223322111111
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...
T Consensus 66 ---------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~ 129 (200)
T 2o52_A 66 ---------VVNVGGKTVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRETYNSLAAWLTDARTL-ASP 129 (200)
T ss_dssp ---------EEEETTEEEEEEEECCTTHHHHSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TCT
T ss_pred ---------EEEECCeeeEEEEEcCCCcHhHHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCC
Confidence 011122335789999999888776665 5678899999999999999999888787776543 236
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.. ....++..++.+... +++++|||++|.|+++++++|.+.+
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 130 NIVVILCGNKKDLDPEREVTFLEASRFAQENE-----------------LMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999964 445667776666554 7899999999999999999998764
No 81
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=2.6e-26 Score=173.58 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=120.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+++|++..+. ...+|.+......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 48 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------------------------------------- 48 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE-------------------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE-------------------------------------
Confidence 45789999999999999999999987654 2333333221111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--- 174 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--- 174 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.....
T Consensus 49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (207)
T 1vg8_A 49 --------EVMVDDRLVTMQIWDTAGQERFQSLGV------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114 (207)
T ss_dssp --------EEESSSCEEEEEEEEECSSGGGSCSCC------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSS
T ss_pred --------EEEECCEEEEEEEEeCCCcHHHHHhHH------HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccccc
Confidence 011122345689999999988776665 667889999999999999999888877777654322
Q ss_pred CCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.. ....++..++.... ...+++++||++|.|+++++++|.+.+
T Consensus 115 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSK----------------NNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp GGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT----------------TSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCcccccCHHHHHHHHHhc----------------CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 14789999999999975 34556666665522 127899999999999999999998764
No 82
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.9e-26 Score=173.51 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=114.6
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
+-+.+++++|+++|++|||||||+++|++..+.. ..||.+.....
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---------------------------------- 64 (207)
T 2fv8_A 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA---------------------------------- 64 (207)
T ss_dssp CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE----------------------------------
T ss_pred ccccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE----------------------------------
Confidence 3445778899999999999999999999876542 22222211100
Q ss_pred ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhc
Q psy871 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTD 172 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~ 172 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+ ..++..+...
T Consensus 65 ------------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 126 (207)
T 2fv8_A 65 ------------DIEVDGKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126 (207)
T ss_dssp ------------EEEETTEEEEEEEEECTTCTTCTTTGG------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred ------------EEEECCEEEEEEEEECCCcHHHHHHHH------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 001122345689999999998877666 667889999999999999999887 3444444332
Q ss_pred cCCCCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871 173 ESLASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
..+.|+++|+||+|+... ...++...+.+... ..++++|||++|.|++
T Consensus 127 --~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~ 188 (207)
T 2fv8_A 127 --CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ----------------AYDYLECSAKTKEGVR 188 (207)
T ss_dssp --STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHH
T ss_pred --CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC----------------CCEEEEeeCCCCCCHH
Confidence 258999999999999753 22233333333322 1389999999999999
Q ss_pred HHHHHHhhhc
Q psy871 239 DGFRWLANYI 248 (249)
Q Consensus 239 ~l~~~l~~~i 248 (249)
+++++|.+.+
T Consensus 189 el~~~l~~~i 198 (207)
T 2fv8_A 189 EVFETATRAA 198 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 83
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=1.1e-26 Score=172.13 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=110.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
+++.+|+++|++|+|||||++++.+..+. ...||.+.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-------------------------------------- 47 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-------------------------------------- 47 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC--------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE--------------------------------------
Confidence 56789999999999999999999876643 222222110000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+. .|+..+... ..
T Consensus 48 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 111 (182)
T 3bwd_D 48 --------NVVVNGATVNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVSKKWIPELKHY--AP 111 (182)
T ss_dssp --------CCC-------CEEECCCC-CTTTTTGG------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred --------EEEECCEEEEEEEEECCCChhhhhhHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 001122344577999999998877766 6678899999999999999998876 455555332 24
Q ss_pred CCcEEEEEecCCCCCC------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 177 SCPVLILGNKIDKHGA------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
+.|+++|+||+|+.+. ...++..++.+... ..++++|||++|.|+++++++|
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG----------------APAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT----------------CSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC----------------CCEEEEEECCCCCCHHHHHHHH
Confidence 8999999999998653 13455555555544 1389999999999999999999
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+.+
T Consensus 176 ~~~i 179 (182)
T 3bwd_D 176 IRVV 179 (182)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 84
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=1.3e-26 Score=175.20 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=94.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC--CCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD--RLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+++++|+|+|++|||||||+++|++. .+. ...+|.+......
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~----------------------------------- 62 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVA----------------------------------- 62 (208)
T ss_dssp EEEEEEEEC----------------------------------CE-----------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEE-----------------------------------
Confidence 56789999999999999999999876 333 2223332111110
Q ss_pred CCcccceeceecccccc--ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 96 PTLHPTRRVWKDYFPAV--DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
...+.+. ...+.+||+||++.+..... .++..+|++++|+|++++.++..+..|+..+....
T Consensus 63 ----------~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 126 (208)
T 2yc2_C 63 ----------PVTIPDTTVSVELFLLDTAGSDLYKEQIS------QYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126 (208)
T ss_dssp ----------EEECTTSSEEEEEEEEETTTTHHHHHHHS------TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred ----------EEEECCcccEEEEEEEECCCcHHHHHHHH------HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 0111222 45789999999988877665 67788999999999999999999888887776543
Q ss_pred C--CCCCcEEEEEecCCCCC---CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc-ccchHHHHHHHhhh
Q psy871 174 S--LASCPVLILGNKIDKHG---AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM-RQGYGDGFRWLANY 247 (249)
Q Consensus 174 ~--~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~gv~~l~~~l~~~ 247 (249)
. ..+.|+++|+||+|+.. ....+++.++.+... ++++++||++ |.|+++++++|.+.
T Consensus 127 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-----------------LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp SCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-----------------CEEEECCC-------CHHHHHHHHH
T ss_pred cccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-----------------CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 2 25899999999999976 455677777777655 7899999999 99999999999875
Q ss_pred c
Q psy871 248 I 248 (249)
Q Consensus 248 i 248 (249)
+
T Consensus 190 ~ 190 (208)
T 2yc2_C 190 F 190 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=172.75 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=113.7
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+.++|+++|++|||||||+++|++..+. ...||.+.....
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEE-------------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEE-------------------------------------
Confidence 467889999999999999999999876643 222333211100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 175 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+. .|+..+... .
T Consensus 60 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~ 122 (201)
T 2q3h_A 60 ---------VVSVDGRPVRLQLCDTAGQDEFDKLRP------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--C 122 (201)
T ss_dssp ---------EEEETTEEEEEEEEECCCSTTCSSSGG------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--C
T ss_pred ---------EEEECCEEEEEEEEECCCCHHHHHHhH------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--C
Confidence 011122345688999999998877766 5678899999999999999998876 466555433 2
Q ss_pred CCCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871 176 ASCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
.+.|+++|+||+|+.. ....++...+.+... ..++++|||++|.|+++++
T Consensus 123 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~ 186 (201)
T 2q3h_A 123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK----------------AASYIECSALTQKNLKEVF 186 (201)
T ss_dssp SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECCTTTCTTHHHHH
T ss_pred CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC----------------CcEEEEEecCCCCCHHHHH
Confidence 4899999999999964 234555666555544 1389999999999999999
Q ss_pred HHHhhhc
Q psy871 242 RWLANYI 248 (249)
Q Consensus 242 ~~l~~~i 248 (249)
++|.+.+
T Consensus 187 ~~l~~~~ 193 (201)
T 2q3h_A 187 DAAIVAG 193 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 86
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=6.3e-27 Score=178.35 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=123.7
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
-..+.++|+|+|++|||||||+++|++..+.. ..+|++.... ...+.+.+....
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~-------~~~~~~~~~~~~------------------ 75 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFR-------EKRVVYNAQGPN------------------ 75 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEE-------EEEEEEEC----------------------
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEE-------EEEEEECCcccc------------------
Confidence 34667899999999999999999999876542 2222221111 111111111000
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
+ .........+.+||+||++++..... .++..+|++++|+|++++.++..+..|+..+......
T Consensus 76 -~---------~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~ 139 (217)
T 2f7s_A 76 -G---------SSGKAFKVHLQLWDTAGQERFRSLTT------AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139 (217)
T ss_dssp -------------CCEEEEEEEEEEEESHHHHHHHHH------HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTT
T ss_pred -c---------cccCceeEEEEEEECCCcHhHHhHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc
Confidence 0 00112245689999999988877666 6678899999999999999998887777666443333
Q ss_pred CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+.+ ....++..++.+... +++++|||++|.|+++++++|.+.+
T Consensus 140 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQREVNERQARELADKYG-----------------IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccCHHHHHHHHHHCC-----------------CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999975 445677777776655 7899999999999999999998764
No 87
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=2.4e-26 Score=170.77 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=117.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..++++|+++|++|||||||+++|.+..+. .+.||.+.....
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~------------------------------------- 46 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA------------------------------------- 46 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-------------------------------------
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-------------------------------------
Confidence 356789999999999999999999987664 233443211100
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESL 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~ 175 (249)
...+......+.+||+||++.+..... .++..+|++++|+|++++.++..+ ..|+..+... .
T Consensus 47 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~ 109 (184)
T 1m7b_A 47 ---------SFEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--C 109 (184)
T ss_dssp ---------EEECSSCEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--C
T ss_pred ---------EEEECCEEEEEEEEECCCChhhhhhHH------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--C
Confidence 001122345689999999998877766 567899999999999999999887 4555555332 2
Q ss_pred CCCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-cccchHHH
Q psy871 176 ASCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-MRQGYGDG 240 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~gv~~l 240 (249)
.+.|+++|+||+|+.+ ....++..++.+... ..++++|||+ +|.|++++
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~gi~~l 173 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDI 173 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECBTTTBHHHHHHH
T ss_pred CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC----------------CcEEEEeeecCCCcCHHHH
Confidence 5799999999999973 345566666665543 2589999999 69999999
Q ss_pred HHHHhhhc
Q psy871 241 FRWLANYI 248 (249)
Q Consensus 241 ~~~l~~~i 248 (249)
|+++.+.+
T Consensus 174 ~~~i~~~~ 181 (184)
T 1m7b_A 174 FHVATLAC 181 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998753
No 88
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=174.30 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=101.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+++|++|||||||+++|++..+. ...||......
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--------------------------------------- 72 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM--------------------------------------- 72 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE---------------------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE---------------------------------------
Confidence 56789999999999999999999876654 22233211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (249)
....+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+. .|+..+... ..
T Consensus 73 -------~~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 137 (214)
T 2j1l_A 73 -------VNLQVKGKPVHLHIWDTAGQDDYDRLRP------LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CK 137 (214)
T ss_dssp -------EEEEETTEEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CS
T ss_pred -------EEEEECCEEEEEEEEECCCchhhhHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CC
Confidence 0011122345688999999998877776 6678899999999999999998876 455555332 25
Q ss_pred CCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 177 SCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
++|+++|+||+|+... ...++..++.+... ..++++|||++|.|++++++
T Consensus 138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG----------------AVAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECBTTTTBSHHHHHH
T ss_pred CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC----------------CCEEEEecCCCCCCHHHHHH
Confidence 7999999999999763 23344444444433 13899999999999999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
+|.+.+
T Consensus 202 ~l~~~~ 207 (214)
T 2j1l_A 202 EAAEVA 207 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 89
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.3e-26 Score=175.18 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=117.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+++|++..+. ...||.+......
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 53 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATR------------------------------------- 53 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEE-------------------------------------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-------------------------------------
Confidence 55789999999999999999999987765 2333333221111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus 54 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~-~~~~ 118 (223)
T 3cpj_B 54 --------TLEIEGKRIKAQIWDTAGQERYRAITS------AYYRGAVGALIVYDISKSSSYENCNHWLSELREN-ADDN 118 (223)
T ss_dssp --------EEEETTEEEEEEEECCTTTTTTTCCCG------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH-CC--
T ss_pred --------EEEECCEEEEEEEEECCCccchhhhHH------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCC
Confidence 011122235689999999998877666 6778899999999999999999888777776543 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-----------------LLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999965 455667777666554 7899999999999999999998765
No 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=7.3e-26 Score=171.88 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=120.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+++|++..+. ...||.+......
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 60 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK------------------------------------- 60 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEE-------------------------------------
Confidence 45689999999999999999999987654 3333333221111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus 61 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~ 125 (213)
T 3cph_A 61 --------TVDINGKKVKLQLWDTAGQERFRTITT------AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH-ANDE 125 (213)
T ss_dssp --------EEEETTEEEEEEEECCTTGGGGTCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TTTC
T ss_pred --------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence 011122235689999999988876665 5678899999999999999998888777776543 2357
Q ss_pred CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.. ....++..++.+... ++++++||++|.|+++++++|.+.+
T Consensus 126 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 126 AQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp SEEEEEEECTTCSSCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999954 345566666666655 6899999999999999999998754
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=2.5e-26 Score=174.44 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=117.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++.++|+++|++|+|||||+++|.+..+. ...||.+......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------- 49 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN------------------------------------- 49 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEE-------------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEE-------------------------------------
Confidence 35689999999999999999999987654 2334433111000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (249)
..+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+. .|+..+... ..
T Consensus 50 ---------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~ 112 (212)
T 2j0v_A 50 ---------VAVDGQIVNLGLWDTAGQEDYSRLRP------LSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--AP 112 (212)
T ss_dssp ---------EECSSCEEEEEEECCCCCCCCCC--C------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred ---------EEECCEEEEEEEEECCCcHHHHHHHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 01223345789999999998877766 6778899999999999999998876 565555432 24
Q ss_pred CCcEEEEEecCCCCCC----------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 177 SCPVLILGNKIDKHGA----------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+.|+++|+||+|+.+. ...++..++.+... ..+++++||++|.|+++++++|.+
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG----------------AAAYIECSSKTQQNVKAVFDTAIK 176 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT----------------CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC----------------CceEEEccCCCCCCHHHHHHHHHH
Confidence 8999999999999663 14556666665544 148999999999999999999987
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
.+
T Consensus 177 ~~ 178 (212)
T 2j0v_A 177 VV 178 (212)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 92
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=2.3e-25 Score=169.34 Aligned_cols=178 Identities=22% Similarity=0.172 Sum_probs=112.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..+.++|+++|++|||||||+++|++..+....++.......+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------- 46 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIY------------------------------------- 46 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEE-------------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEE-------------------------------------
Confidence 4568899999999999999999999877654333322111111
Q ss_pred cccceeceecccccc-ceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhc--
Q psy871 98 LHPTRRVWKDYFPAV-DAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTD-- 172 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~-- 172 (249)
.+.+. ...+.+|||||++++.. ... .++..+|++++|+|+++.. ++.....++..++..
T Consensus 47 ----------~~~~~~~~~~~i~Dt~G~~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 110 (214)
T 2fh5_B 47 ----------KVNNNRGNSLTLIDLPGHESLRFQLLD------RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM 110 (214)
T ss_dssp ----------ECSSTTCCEEEEEECCCCHHHHHHHHH------HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------EecCCCccEEEEEECCCChhHHHHHHH------HHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh
Confidence 01111 35689999999998876 455 4578899999999999853 455555555555433
Q ss_pred cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhccc----------------------ccCcccCCCCCCCCCceeEEEee
Q psy871 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGL----------------------TTGKVATPRSEMSGRPIELFMCS 230 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~S 230 (249)
....+.|+++|+||+|+......++..+.++.... .......+........+++++||
T Consensus 111 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 190 (214)
T 2fh5_B 111 ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECS 190 (214)
T ss_dssp TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECB
T ss_pred hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEee
Confidence 12357999999999999876555555444432110 00000000000000157899999
Q ss_pred eccc------cchHHHHHHHhhhc
Q psy871 231 VLMR------QGYGDGFRWLANYI 248 (249)
Q Consensus 231 a~~g------~gv~~l~~~l~~~i 248 (249)
|++| .|+++++++|.+.+
T Consensus 191 Ak~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 191 AKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CC-------CCBCHHHHHHHHHHC
T ss_pred ccCCCccccccChHHHHHHHHHhC
Confidence 9999 99999999998764
No 93
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.4e-25 Score=167.69 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=110.6
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
.++.+||+++|++|||||||++++++.... ...++.+......
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 47 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYER----------------------------------- 47 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEE-----------------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEE-----------------------------------
Confidence 356789999999999999999999864322 1111111110000
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
...+.+....+.+||++|.+.. ..... .++..+|++++|+|+++..+|.....++..+.....
T Consensus 48 ----------~~~~~~~~~~l~~~Dt~~~~~~~~~~~~------~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~ 111 (192)
T 2cjw_A 48 ----------TLMVDGESATIILLDMWENKGENEWLHD------HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 111 (192)
T ss_dssp ----------EEEETTEEEEEEEECCCCC----CTTGG------GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------EEEECCeEEEEEEEEeccCcchhhhHHH------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 0112233445789999997652 22222 445679999999999999999988777766654333
Q ss_pred CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.. ....++...+..... .++++|||++|.|++++|++|.+.+
T Consensus 112 ~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-----------------~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-----------------XKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEechhhhccccccHHHHHHHHHHhC-----------------CceEEeccccCCCHHHHHHHHHHHH
Confidence 35799999999999964 344555554444433 6899999999999999999998754
No 94
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=7.4e-26 Score=170.93 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=117.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.+||+++|++|||||||+++|++..+.. +.||.+.....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~-------------------------------------- 67 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-------------------------------------- 67 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE--------------------------------------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE--------------------------------------
Confidence 456899999999999999999999877652 23343211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||++|++.+..... .++..+|++++|+|++++.++..+ ..|+..+... ..
T Consensus 68 --------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~ 131 (205)
T 1gwn_A 68 --------SFEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CP 131 (205)
T ss_dssp --------EEESSSSEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred --------EEEECCEEEEEEEEeCCCcHhhhHHHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CC
Confidence 001123345689999999998877766 567889999999999999999887 4565555432 25
Q ss_pred CCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-cccchHHHH
Q psy871 177 SCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-MRQGYGDGF 241 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~gv~~l~ 241 (249)
+.|+++|+||+|+.+ ....++..++.+... ..++++|||+ +|.|++++|
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDIF 195 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECCTTTCHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC----------------CCEEEEeeeccCCcCHHHHH
Confidence 799999999999973 244555666665543 1589999999 689999999
Q ss_pred HHHhhhc
Q psy871 242 RWLANYI 248 (249)
Q Consensus 242 ~~l~~~i 248 (249)
+.+.+.+
T Consensus 196 ~~l~~~~ 202 (205)
T 1gwn_A 196 HVATLAC 202 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 95
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=4.6e-26 Score=173.71 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=118.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..++||+++|++|||||||+++|++..+. ...+|.+....... +
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---------~-------------------------- 53 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT---------F-------------------------- 53 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE---------E--------------------------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE---------E--------------------------
Confidence 45789999999999999999999876654 22233332222110 0
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
....+....+.+|||||++.+..... .++..+|++++|+|+++..++..+..|+..+... ...+
T Consensus 54 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~ 117 (218)
T 4djt_A 54 ---------LDDQGNVIKFNVWDTAGQEKKAVLKD------VYYIGASGAILFFDVTSRITCQNLARWVKEFQAV-VGNE 117 (218)
T ss_dssp ---------EBTTSCEEEEEEEEECSGGGTSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSS
T ss_pred ---------EeCCCcEEEEEEEecCCchhhchHHH------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCC
Confidence 00011125689999999988877666 5567899999999999999999888777766543 2246
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+ ....++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKN-----------------YEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp SCEEEEEECTTCC----CCHHHHHHHTTTCC-----------------CEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999975 344555555555444 7899999999999999999998764
No 96
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=1e-26 Score=177.76 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=121.0
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
..++++||+++|++|||||||+++++.+.+. ...+|.+......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~----------------------------------- 55 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL----------------------------------- 55 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEE-----------------------------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEE-----------------------------------
Confidence 4467789999999999999999996654433 3334444332222
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+......+.+|||||++.+..... .++..+|++++|+|++++.++..+..|+..+... .
T Consensus 56 ----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~ 117 (221)
T 3gj0_A 56 ----------VFHTNRGPIKFNVWDTAGQEKFGGLRD------GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--C 117 (221)
T ss_dssp ----------EEEETTEEEEEEEEEECSGGGTSCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--S
T ss_pred ----------EEEECCEEEEEEEEeCCChHHHhHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh--C
Confidence 111223345789999999988877766 5677899999999999999999988888887654 2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+.+.....+...+.+... +++++|||++|.|+++++++|.+.+
T Consensus 118 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 118 ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TTCCEEEEEECTTSSSCSSCGGGCCHHHHHT-----------------CEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999976433333333333333 7899999999999999999998764
No 97
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=1.3e-24 Score=160.37 Aligned_cols=165 Identities=18% Similarity=0.263 Sum_probs=110.3
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+..+.++|+++|++|||||||+++|++..+.. ..++........
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~----------------------------------- 48 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY----------------------------------- 48 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCC-----------------------------------
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEE-----------------------------------
Confidence 45678999999999999999999999876552 122221111110
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
.+...+..+.+|||||++++..... .++..+|++++|+|+++........ .+..+. .
T Consensus 49 ------------~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~~----~ 105 (178)
T 2lkc_A 49 ------------QVTVNDKKITFLDTPGHEAFTTMRA------RGAQVTDIVILVVAADDGVMPQTVE-AINHAK----A 105 (178)
T ss_dssp ------------EEEETTEEEEESCCCSSSSSSCSCC------SSCCCCCEEEEEEETTCCCCHHHHH-HHHHHG----G
T ss_pred ------------EEEeCCceEEEEECCCCHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH----h
Confidence 0111234578999999988877665 6778899999999998843222221 233332 2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+.+. ..+++...++..... ........+++++||++|.|+++++++|.+.+
T Consensus 106 ~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 106 ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLV--------PEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCC--------BTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcC--------hhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 57999999999999764 344555444332200 00011236899999999999999999998764
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=8.9e-25 Score=163.89 Aligned_cols=164 Identities=11% Similarity=0.151 Sum_probs=107.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
..+.+||+++|++|||||||++++.+..... ++.+....
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~--------------------------------------- 55 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLEST--------------------------------------- 55 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCC---------------------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccc---------------------------------------
Confidence 4678899999999999999999987643222 11111100
Q ss_pred cccceeceeccc-cccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCCh--hhhHhhHHHHHHHHh
Q psy871 98 LHPTRRVWKDYF-PAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDR--ERFEESKSELQCLLT 171 (249)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~ 171 (249)
.......+ .+....+.+||++|++++.... . .++..+|++++|+|+++. .++..+..++.++..
T Consensus 56 ----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~ 125 (196)
T 3llu_A 56 ----NKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE------MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK 125 (196)
T ss_dssp ----CSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH------HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH
T ss_pred ----cceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc------cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh
Confidence 00000001 1334568999999998876665 4 566789999999999997 566666656665532
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCH---------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 172 DESLASCPVLILGNKIDKHGAASE---------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
...+.|+++|+||+|+.+.... ++..++.+.. .....+++++|||++ .|++++|.
T Consensus 126 --~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~e~Sa~~-~~v~~~f~ 189 (196)
T 3llu_A 126 --VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG-------------LEKLHLSFYLTSIYD-HSIFEAFS 189 (196)
T ss_dssp --HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT-------------CTTSCEEEEEECTTS-THHHHHHH
T ss_pred --cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh-------------hhcCCcceEEEEech-hhHHHHHH
Confidence 2368999999999998762111 1112222211 011347899999999 99999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
.|.+.|
T Consensus 190 ~l~~~l 195 (196)
T 3llu_A 190 KVVQKL 195 (196)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998865
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=7.5e-27 Score=175.64 Aligned_cols=161 Identities=23% Similarity=0.238 Sum_probs=108.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.+||+|+|++|||||||+++|++..+.. ..++.+.....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 72 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI-------------------------------------- 72 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEE--------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEE--------------------------------------
Confidence 356899999999999999999998655432 11111111111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
....+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+..++..+.. ....+
T Consensus 73 -------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~ 138 (199)
T 3l0i_B 73 -------RTIELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR-YASEN 138 (199)
T ss_dssp -------EEEEETTEEEEEEEECCTTCTTCCCCSC------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS-CC-CC
T ss_pred -------EEEEECCEEEEEEEEECCCcHhHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-hccCC
Confidence 0111223335689999999988877666 677889999999999999999998877777643 23357
Q ss_pred CcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++|+||+|+.+. ...++...+.+... ++++++||++|.|+++++++|.+.+
T Consensus 139 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp SEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-----------------CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CCEEEEEECccCCccccCCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999999652 22233444444433 6899999999999999999999875
No 100
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=6e-25 Score=184.74 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=107.7
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCc----------hhhhhhHHHHhh
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR----------ERFEESKSELQC 136 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~----------~~~~~~~~~~~~ 136 (249)
.++.++|.+++|||++++++.........+..+.+.......+...+..+.+|||||. +.+...+
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~----- 270 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR----- 270 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH-----
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH-----
Confidence 4678999999999999999997664433333444444443444445567999999993 4333322
Q ss_pred hhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccC
Q psy871 137 LLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVAT 214 (249)
Q Consensus 137 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
.+.++..+|++++|+|+++....+.. ++...+.. .++|+++|+||+|+.+. ...+++.+.++...
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-------- 337 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF-------- 337 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC--------
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc--------
Confidence 23467889999999999985443332 33343333 67999999999999763 33455555555432
Q ss_pred CCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 215 PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 215 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
......+++++||++|.|++++++.+.+.+
T Consensus 338 ----~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 338 ----QFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ----GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ----ccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 011237899999999999999999988754
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=7.4e-27 Score=176.32 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=110.7
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
+..++++|+++|++|||||||+++|++..+. ...+|.+.....
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~------------------------------------ 69 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA------------------------------------ 69 (204)
Confidence 4467899999999999999999999866543 112221100000
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccC
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDES 174 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~ 174 (249)
...+.+....+.+||+||++++..... .++..+|++++|+|++++.++..+. .++..+...
T Consensus 70 ----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-- 131 (204)
T 3th5_A 70 ----------NVMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-- 131 (204)
Confidence 001122334577999999988877666 5678899999999999999998876 444444321
Q ss_pred CCCCcEEEEEecCCCCCCCCH--------------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 175 LASCPVLILGNKIDKHGAASE--------------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
..+.|+++|+||+|+.+.... ++..++.+.. ...++++|||++|.|++++
T Consensus 132 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~vSA~~g~gi~~l 195 (204)
T 3th5_A 132 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI----------------GAVKYLECSALTQRGLKTV 195 (204)
Confidence 137999999999999753211 1111111111 1138999999999999999
Q ss_pred HHHHhhhc
Q psy871 241 FRWLANYI 248 (249)
Q Consensus 241 ~~~l~~~i 248 (249)
+++|.+.+
T Consensus 196 ~~~l~~~i 203 (204)
T 3th5_A 196 FDEAIRAV 203 (204)
Confidence 99998754
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=1.2e-24 Score=158.74 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=100.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
|++.+|+++|++|||||||+++|++..+.. ..|+..
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t------------------------------------------- 37 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT------------------------------------------- 37 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----C-------------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcc-------------------------------------------
Confidence 457899999999999999999998765321 111100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES 174 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
..... ..+...+..+.+|||||++++.... .....++. ...+|++++|+|+++..... .++.++..
T Consensus 38 ~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~~~~~~~~---~~~~~~~~--- 106 (165)
T 2wji_A 38 VEKKE----GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPDLVVNIVDATALERNL---YLTLQLME--- 106 (165)
T ss_dssp CCCCE----EEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHCCSEEEEEEETTCHHHHH---HHHHHHHH---
T ss_pred eeeeE----EEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCCCCEEEEEecCCchhHhH---HHHHHHHh---
Confidence 00000 0111123568999999988764321 11111111 13689999999999865432 24444432
Q ss_pred CCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+... .. .+..++.+... .+++++||++|.|+++++++|.+.+
T Consensus 107 -~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~-----------------~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 -MGANLLLALNKMDLAKSLGIE-IDVDKLEKILG-----------------VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHT-----------------SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -cCCCEEEEEEchHhccccChh-hHHHHHHHHhC-----------------CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47999999999998531 11 12333344433 6899999999999999999998875
No 103
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=7.3e-25 Score=183.25 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=107.5
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhH---H--HHhhhhccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---S--ELQCLLTDE 141 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~--~~~~~~~~~ 141 (249)
.++.++|.+++|||++++++.+..+....+..+.++......+...+..+.+|||||+.+..... + .....+.++
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 255 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence 47899999999999999999987764333333444444434444445679999999974322211 1 011223467
Q ss_pred cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC--HHHHHHHhhhcccccCcccCCCCCC
Q psy871 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS--EEEIRQYFGLYGLTTGKVATPRSEM 219 (249)
Q Consensus 142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
..+|++++|+|+++..++++.. ++..+. . .++|+++|+||+|+.+... .+++.+.+.... .
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~~-~~~~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l------------~ 318 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDKR-IAGYAH-E---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF------------Q 318 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHHH-HHHHHH-H---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC------------G
T ss_pred HhCCEEEEEEcCCcCCcHHHHH-HHHHHH-H---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhc------------c
Confidence 7899999999999988877653 444433 2 5799999999999986432 334433332211 0
Q ss_pred CCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 220 SGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.....+++++||++|.|++++++.+.+.+
T Consensus 319 ~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 319 FLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred cCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 01236899999999999999999887653
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=2.8e-24 Score=160.76 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=106.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...++|+++|++|||||||+++|++.......++.+.......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~------------------------------------- 63 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF------------------------------------- 63 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE-------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE-------------------------------------
Confidence 3457999999999999999999998775544444432222110
Q ss_pred ccceeceeccccccceEEEEEeCCC----------chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSD----------RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC 168 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g----------~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 168 (249)
...+..+.+||||| ++.+.... ..++.....+|++++|+|+++....... .+..
T Consensus 64 -----------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~ 127 (195)
T 3pqc_A 64 -----------YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV---EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVE 127 (195)
T ss_dssp -----------EEETTTEEEEECCCBSSSCCCHHHHHHHHHHH---HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHH
T ss_pred -----------EEECCcEEEEECCCCccccCChhhHHHHHHHH---HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHH
Confidence 00112377999999 33333333 3344555667999999999875443322 2223
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.. .+.|+++|+||+|+.+....+...+..+... .....++++++||++|.|+++++++|.+.+
T Consensus 128 ~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 128 WMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF------------SKYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH------------HSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHH------------hhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 3333 4799999999999986544444433333322 011236899999999999999999999876
Q ss_pred C
Q psy871 249 D 249 (249)
Q Consensus 249 ~ 249 (249)
.
T Consensus 193 ~ 193 (195)
T 3pqc_A 193 K 193 (195)
T ss_dssp C
T ss_pred h
Confidence 3
No 105
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=1.2e-24 Score=159.89 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=103.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+..+|+++|++|||||||+++|++.......+..+......
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~-------------------------------------- 43 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL-------------------------------------- 43 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceecee--------------------------------------
Confidence 345799999999999999999998765432111111111100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+...+..+.+|||||++++....+ .......++..+|++++|+|+++..++... .++..+... ...
T Consensus 44 -------~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~-~~~ 114 (172)
T 2gj8_A 44 -------REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIAR-LPA 114 (172)
T ss_dssp -------EEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-HHCHHHHHH-SCT
T ss_pred -------eEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHHh-ccc
Confidence 011111233578999999865432221 122233567889999999999998777533 344444332 235
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+..+.. +..+. ...+++++||++|.|+++++++|.+.+
T Consensus 115 ~~p~ilv~NK~Dl~~~~~-----~~~~~-----------------~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 115 KLPITVVRNKADITGETL-----GMSEV-----------------NGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCCEEEEEECHHHHCCCC-----EEEEE-----------------TTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCCEEEEEECccCCcchh-----hhhhc-----------------cCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999854210 00010 236899999999999999999998865
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=4.4e-24 Score=159.79 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=101.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+.++|+|+|++|||||||+++|++..+. ...++.+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------------------------------------- 63 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN-------------------------------------- 63 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEE--------------------------------------
Confidence 5689999999999999999999876532 2222222111110
Q ss_pred ccceeceeccccccceEEEEEeCCC----------chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSD----------RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC 168 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g----------~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 168 (249)
. ... +..+.+||||| ++.+..... .++.....+|++++|+|+++..++... .+..
T Consensus 64 -----~--~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~ 128 (195)
T 1svi_A 64 -----F--YII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE---TYITTREELKAVVQIVDLRHAPSNDDV--QMYE 128 (195)
T ss_dssp -----E--EEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH---HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHH
T ss_pred -----E--EEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH---HHHhhhhcCCEEEEEEECCCCCCHHHH--HHHH
Confidence 0 000 12488999999 333333332 333444455999999999997766654 2333
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+.. .+.|+++|+||+|+.+........+.+.. +. .....+++++||++|.|+++++++|.+.
T Consensus 129 ~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 129 FLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN-------------IDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT-------------CCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc-------------ccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 3333 67999999999999875333332222222 22 0123789999999999999999999887
Q ss_pred cC
Q psy871 248 ID 249 (249)
Q Consensus 248 i~ 249 (249)
+.
T Consensus 193 l~ 194 (195)
T 1svi_A 193 IN 194 (195)
T ss_dssp HT
T ss_pred hc
Confidence 63
No 107
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.2e-23 Score=168.13 Aligned_cols=168 Identities=19% Similarity=0.174 Sum_probs=113.9
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
-+.++..|+++|++|||||||+|+|++..+....++.+.+...+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~------------------------------------ 49 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRV------------------------------------ 49 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE------------------------------------
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEE------------------------------------
Confidence 45677899999999999999999999877653332222221111
Q ss_pred Ccccceeceecccccc-ceEEEEEeCCCchhhh---hhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 97 TLHPTRRVWKDYFPAV-DAIVFLVDTSDRERFE---ESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~---~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
...+... +..+.+|||||+.... ...+ .......++..+|++++|+|+++..++.+...|+..+ .
T Consensus 50 ---------~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l-~ 119 (308)
T 3iev_A 50 ---------LGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-K 119 (308)
T ss_dssp ---------EEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT-G
T ss_pred ---------EEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH-H
Confidence 1112222 5679999999986543 1111 2233346678899999999999987777654334444 2
Q ss_pred ccCCCCCcEEEEEecCCCC-CCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 172 DESLASCPVLILGNKIDKH-GAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
. .+.|+++|+||+|+. +... .+....+.+... ...+++++||++|.|+++++++|.+.+
T Consensus 120 ~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~---------------~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 120 P---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP---------------ELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp G---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT---------------TCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred h---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc---------------CCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 2 579999999999997 4322 233333333321 236799999999999999999998865
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=3.8e-24 Score=155.16 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=100.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++|+++|++|||||||+++|.+..+....++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTR-------------------------------------------- 37 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCcee--------------------------------------------
Confidence 589999999999999999998765432111111000
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhhHHH-HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 180 (249)
......+...+..+.+||+||++.+...... .......+..+|++++|+|+++..+... .++.+++.. .+.|+
T Consensus 38 -~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ 111 (161)
T 2dyk_A 38 -DLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPV 111 (161)
T ss_dssp -CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCE
T ss_pred -cceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCE
Confidence 0000111122346889999998764321111 1222356788999999999998643322 244444443 57999
Q ss_pred EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
++|+||+|+.+. .++..++. ..+ ..+++++||++|.|+++++++|.+.+.
T Consensus 112 ilv~nK~Dl~~~--~~~~~~~~-~~~----------------~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 112 ILVATKVDDPKH--ELYLGPLY-GLG----------------FGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp EEEEECCCSGGG--GGGCGGGG-GGS----------------SCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEEECcccccc--hHhHHHHH-hCC----------------CCCeEEEecccCCChHHHHHHHHHhCc
Confidence 999999999754 11222211 111 127999999999999999999998763
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.91 E-value=1.2e-23 Score=170.22 Aligned_cols=160 Identities=15% Similarity=0.192 Sum_probs=115.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+..+|+++|.+|+|||||++++++..+. ...+|.+.....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-------------------------------------- 194 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-------------------------------------- 194 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEE--------------------------------------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEE--------------------------------------
Confidence 45689999999999999999999977654 222332211100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (249)
...+.+....+.+||+||++.+..... .++..+|++++|+|++++.++..+. .|+..+... ..
T Consensus 195 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 258 (332)
T 2wkq_A 195 --------NVMVDGKPVNLGLWDTAGLEDYDRLRP------LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CP 258 (332)
T ss_dssp --------EEEETTEEEEEEEEEECCCGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred --------EEEECCEEEEEEEEeCCCchhhhHHHH------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CC
Confidence 001122344677999999998877666 6778899999999999999998876 344444332 23
Q ss_pred CCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871 177 SCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
++|+++|+||+|+... ...++..++.+... ..++++|||++|.|++++++
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHHHHHH
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC----------------CcEEEEecCCCCcCHHHHHH
Confidence 8999999999998642 33444555554433 13899999999999999999
Q ss_pred HHhhhc
Q psy871 243 WLANYI 248 (249)
Q Consensus 243 ~l~~~i 248 (249)
+|.+.+
T Consensus 323 ~l~~~~ 328 (332)
T 2wkq_A 323 EAIRAV 328 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 110
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=3.8e-24 Score=158.84 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=105.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC--CC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR--LA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
++||+++|++|||||||+++|++.. +. .+.||++.......+ .+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~-------~~-------------------------- 48 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPI-------QI-------------------------- 48 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC-----------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeee-------cc--------------------------
Confidence 5799999999999999999998752 22 234444432222100 00
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhccCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~ 176 (249)
.........+.+||++|++++..... .++..++++++|+|++++ .++..+..|+.++... ..
T Consensus 49 ---------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~ 111 (184)
T 2zej_A 49 ---------RDKRKRDLVLNVWDFAGREEFYSTHP------HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--AS 111 (184)
T ss_dssp ----------------CEEEEEEECSHHHHHTTSH------HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CT
T ss_pred ---------ccCCCCceEEEEEecCCCHHHHHhhH------HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CC
Confidence 00011245688999999988877655 456678999999999997 5788888788777543 24
Q ss_pred CCcEEEEEecCCCCCCCCHHH-HHHHhhhcccccCcccCCCCCCCC-CceeEEEeeecccc-chHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEE-IRQYFGLYGLTTGKVATPRSEMSG-RPIELFMCSVLMRQ-GYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~-gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.+.....+ .....+.+.. .... ...+++++||++|. |++++++.+.+.+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 112 SSPVILVGTHLDVSDEKQRKACMSKITKELLN----------KRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT----------CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCcccchhhHHHHHHHHHHHHH----------hcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 799999999999975311111 1111122110 0110 11249999999996 9999999987654
No 111
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=9.7e-23 Score=153.12 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=116.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
...++|+++|++|||||||+++|++..+. ...||.+...... .
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~-------~----------------------------- 46 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-------S----------------------------- 46 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEE-------E-----------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-------E-----------------------------
Confidence 34689999999999999999999987654 2334433221111 0
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..+.+.+..+.+||++|++.+..... .++..++++++|+|+++..++..+..++..+... ...+
T Consensus 47 ---------i~~~g~~~~~~i~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~ 110 (199)
T 2f9l_A 47 ---------IQVDGKTIKAQIWDTAGQERYRRITS------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSN 110 (199)
T ss_dssp ---------EEETTEEEEEEEEECSSGGGTTCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred ---------EEECCEEEEEEEEECCCchhhhhhhH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 11122334578999999888766555 4456789999999999999988877666655332 2357
Q ss_pred CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|+++++||+|+.+ ....++...++.... +.++++||+++.|+++++++|.+.+
T Consensus 111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-----------------~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-----------------LSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccCcCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999965 345566666666544 7899999999999999999998754
No 112
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=4.6e-23 Score=163.91 Aligned_cols=165 Identities=21% Similarity=0.186 Sum_probs=108.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+..+|+++|++|||||||+|+|++..+....+....+...
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~--------------------------------------- 45 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR--------------------------------------- 45 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC---------------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEE---------------------------------------
Confidence 46678999999999999999999987665322111111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
....+...+..+.+|||||......... .......++..+|++++|+|+++..+..+ .++.+.+... ..
T Consensus 46 ------i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-~~ 116 (301)
T 1wf3_A 46 ------LRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL-VG 116 (301)
T ss_dssp ------EEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TT
T ss_pred ------EEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-cC
Confidence 1111223356799999999775332211 11233466789999999999998644432 3544444432 14
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+..... ++.+.++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 117 ~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~---------------~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPE--EAMKAYHELL---------------PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp TSCEEEEEECGGGCSSHH--HHHHHHHHTS---------------TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECcccCCchH--HHHHHHHHhc---------------CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 799999999999975411 1333333321 225799999999999999999998764
No 113
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.90 E-value=4.8e-24 Score=167.70 Aligned_cols=160 Identities=21% Similarity=0.156 Sum_probs=103.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
|+.++|+++|.+|+|||||+|+|++..... .. ++ +
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v-~~----------------------~~---------------------g- 35 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRV-GN----------------------WA---------------------G- 35 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEE-EE----------------------CT---------------------T-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCccc-CC----------------------CC---------------------C-
Confidence 467899999999999999999998764320 00 00 0
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhh------HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES------KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 172 (249)
.+.......+...+..+.+|||||+..+... .+...........+|++++|+|+++......+..++.+
T Consensus 36 -~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~---- 110 (274)
T 3i8s_A 36 -VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE---- 110 (274)
T ss_dssp -SSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH----
T ss_pred -eeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh----
Confidence 0111111112223456889999998876632 11111122223689999999999997655543333322
Q ss_pred cCCCCCcEEEEEecCCCCCCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 173 ESLASCPVLILGNKIDKHGAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+.+... ..+...+.+..+ ++++++||++|.|++++++++.+.+
T Consensus 111 ---~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 111 ---LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-----------------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ---HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-----------------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ---cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-----------------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3799999999999864211 112233334444 7899999999999999999998764
No 114
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=6.6e-23 Score=156.66 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=104.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCC-CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+|+|++.. .....++.+......
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 69 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN------------------------------------- 69 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-------------------------------------
Confidence 346799999999999999999999876 222222222111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL 170 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~ 170 (249)
.. ......+..+.+|||||.... .........++.....+|++++|+|+++..+... ..+...+
T Consensus 70 ------~~-~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l 140 (223)
T 4dhe_A 70 ------YF-SVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWF 140 (223)
T ss_dssp ------EE-EESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHH
T ss_pred ------EE-EecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHH
Confidence 00 000122346889999995321 1112233345555666899999999998533222 2333333
Q ss_pred hccCCCCCcEEEEEecCCCCCCCCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 171 TDESLASCPVLILGNKIDKHGAASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.. .+.|+++|+||+|+....... ++.+.+..... .......+++++||++|.|+++++++|.+
T Consensus 141 ~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 141 AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD----------AGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH----------HTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh----------cccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 33 679999999999997632221 22222222100 00013478999999999999999999988
Q ss_pred hc
Q psy871 247 YI 248 (249)
Q Consensus 247 ~i 248 (249)
.+
T Consensus 208 ~~ 209 (223)
T 4dhe_A 208 WL 209 (223)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 115
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=166.10 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=67.6
Q ss_pred ccceEEEEEECCCh--hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871 143 LASSIVFLVDTSDR--ERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220 (249)
Q Consensus 143 ~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
.+|++++|+|++++ .++..+..|+..+.......++|+++|+||+|+......++..++.+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~--------------- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK--------------- 226 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS---------------
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc---------------
Confidence 69999999999998 8999888888777654233579999999999996532223333333321
Q ss_pred CCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+++++|||++|.|+++++++|.+.+
T Consensus 227 -~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 227 -KNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp -SSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 126899999999999999999998865
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=1.4e-22 Score=155.46 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=102.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+|+|++|||||||+++|++..+.. .+. . +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~-~~~------------------------~-------------------~- 61 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV-QSY------------------------S-------------------F- 61 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEE-ECC----------------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-CCC------------------------C-------------------C-
Confidence 457899999999999999999998764431 000 0 0
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHH---HHhhhhccccccceEEEEEECCChhhhHh--hHHHHHHHHhcc
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS---ELQCLLTDESLASSIVFLVDTSDRERFEE--SKSELQCLLTDE 173 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~ 173 (249)
.+.......+......+.+|||||+........ ........+..+|++++|+|++++.++.. ...++..+...
T Consensus 62 -~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~- 139 (228)
T 2qu8_A 62 -TTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV- 139 (228)
T ss_dssp ----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-
T ss_pred -cceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-
Confidence 000000011112245789999999843211000 01111123567899999999999877752 22344444221
Q ss_pred CCCCCcEEEEEecCCCCCC--CCHH---HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGA--ASEE---EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+.|+++|+||+|+.+. ...+ ...++.+... ...++++|||++|.|+++++++|.+.+
T Consensus 140 -~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 140 -FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK---------------NPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp -C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC---------------SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC---------------CCceEEEEecccCCCHHHHHHHHHHHH
Confidence 247999999999999763 2222 2222222211 227899999999999999999998764
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.9e-23 Score=155.48 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP 94 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~ 94 (249)
+-++++++|+++|++|||||||+++|++..+. ...|+...
T Consensus 2 ~~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~--------------------------------------- 42 (188)
T 2wjg_A 2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTV--------------------------------------- 42 (188)
T ss_dssp CCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCC---------------------------------------
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeec---------------------------------------
Confidence 44678899999999999999999999875432 11111100
Q ss_pred cCCcccceeceeccccccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
......+...+..+.+|||||++.+.... .....++. ...+|++++|+|.++.. ....++..+..
T Consensus 43 --------~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~d~~~~~---~~~~~~~~~~~ 110 (188)
T 2wjg_A 43 --------EKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPDLVVNIVDATALE---RNLYLTLQLME 110 (188)
T ss_dssp --------EEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-HHCCSEEEEEEEGGGHH---HHHHHHHHHHT
T ss_pred --------cceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-ccCCCEEEEEecchhHH---HHHHHHHHHHh
Confidence 00001111224568999999988764221 11111111 13589999999998743 33335555433
Q ss_pred ccCCCCCcEEEEEecCCCCCCC-CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 172 DESLASCPVLILGNKIDKHGAA-SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++|+||+|+.... ...+..++.+... .+++++||++|.|++++++++.+.+
T Consensus 111 ----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 111 ----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-----------------VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp ----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-----------------SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ----cCCCEEEEEEhhhccccccchHHHHHHHHHhC-----------------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 579999999999985421 1123344444444 6899999999999999999998765
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=2.2e-23 Score=162.39 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=104.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
+++.++|+++|.+|+|||||+|+|++..+.. ..|
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--------------------------------------------- 36 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--------------------------------------------- 36 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT---------------------------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC---------------------------------------------
Confidence 3577899999999999999999998755321 001
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHH---HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS---ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
+. +.......+...+..+.+||+||...+..... ....++. ...+|++++|+|+++..+... ++.++..
T Consensus 37 g~--tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~ii~V~D~t~~~~~~~---~~~~l~~-- 108 (258)
T 3a1s_A 37 GV--TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLVILVADSVNPEQSLY---LLLEILE-- 108 (258)
T ss_dssp TS--CCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEEEEEEETTSCHHHHH---HHHHHHT--
T ss_pred Cc--eEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEEEEEeCCCchhhHHH---HHHHHHh--
Confidence 00 01111111222346799999999887754321 1111221 157999999999999765433 3444432
Q ss_pred CCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 174 SLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+.|+++|+||+|+... ....+...+.+.++ ++++++||++|.|++++++++.+.
T Consensus 109 --~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-----------------~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 109 --MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-----------------IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp --TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-----------------SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred --cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-----------------CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 57999999999998541 11112344444444 789999999999999999998774
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.89 E-value=5.1e-23 Score=153.25 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=93.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 100 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~ 100 (249)
++|+++|++|||||||+++|++..+.. ..|+.......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 41 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI---------------------------------------- 41 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE----------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE----------------------------------------
Confidence 589999999999999999998876442 111111100000
Q ss_pred ceeceeccccccceEEEEEeCCCc-----------hhhhhhHHHHhhhhcc-ccccceEEEEEECCChhhhHhh-HHHHH
Q psy871 101 TRRVWKDYFPAVDAIVFLVDTSDR-----------ERFEESKSELQCLLTD-ESLASSIVFLVDTSDRERFEES-KSELQ 167 (249)
Q Consensus 101 ~~~~~~~~~~~~~~~~~v~D~~g~-----------~~~~~~~~~~~~~~~~-~~~~d~ii~v~d~~~~~~~~~~-~~~~~ 167 (249)
.+. .+.+|||||. +.+..... .++.. ...+++++.|.|.. ++..+ ..|..
T Consensus 42 -------~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~ 104 (190)
T 2cxx_A 42 -------EWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIV---HFIEDNAKNIDVAVLVVDGK---AAPEIIKRWEK 104 (190)
T ss_dssp -------EET----TEEEEECCCBSCCTTSCHHHHHHHHHHHH---HHHHHHGGGCCEEEEEEETT---HHHHHHHHHHH
T ss_pred -------ecC----CEEEEECCCccccccCCHHHHHHHHHHHH---HHHHhhhccCCEEEEEEcch---hhhhHHHhhhc
Confidence 000 4789999994 33333222 22222 34455555555554 44333 11221
Q ss_pred --------HHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 168 --------CLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 168 --------~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
++.......+.|+++|+||+|+.... .++..++.+..+.. ......++++|||++|.|+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 105 RGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVP----------LSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp TTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCC----------GGGHHHHEEECCTTTCTTHHH
T ss_pred cCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhh----------hhccCCcEEEEecCCCCCHHH
Confidence 11111112679999999999998753 44555555554410 000124689999999999999
Q ss_pred HHHHHhhhc
Q psy871 240 GFRWLANYI 248 (249)
Q Consensus 240 l~~~l~~~i 248 (249)
++++|.+.+
T Consensus 174 l~~~l~~~~ 182 (190)
T 2cxx_A 174 LKNRIFEVI 182 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=2.3e-23 Score=162.06 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=99.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++|+++|.+|+|||||+|+|++..... ..++ + .+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-----------------------~~~p---------------------g--~T 35 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV-----------------------GNWP---------------------G--VT 35 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE-----------------------EECT---------------------T--SS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc-----------------------cCCC---------------------C--ce
Confidence 589999999999999999998764220 0001 0 11
Q ss_pred eeceeccccccceEEEEEeCCCchhhhhh------HHHHhhhhccc--cccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEES------KSELQCLLTDE--SLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~------~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
.......+...+..+.+|||||...+... .+.... .++ ..+|++++|+|+++......+. ..+ ..
T Consensus 36 v~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~--~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l-~~- 108 (256)
T 3iby_A 36 VEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAA--QSVIDLEYDCIINVIDACHLERHLYLT---SQL-FE- 108 (256)
T ss_dssp SEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHH--HHHHHSCCSEEEEEEEGGGHHHHHHHH---HHH-TT-
T ss_pred EEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHH--HHHhhCCCCEEEEEeeCCCchhHHHHH---HHH-HH-
Confidence 11111122223457899999998877532 221111 222 6799999999999976555432 222 22
Q ss_pred CCCCCcEEEEEecCCCCCCC-CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 174 SLASCPVLILGNKIDKHGAA-SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.++|+++|+||+|+.... ...+...+.+.++ ++++++||++|.|++++++++.+.
T Consensus 109 --~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 109 --LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-----------------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp --SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-----------------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred --cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 579999999999986421 1112333334444 789999999999999999999763
No 121
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=4.5e-23 Score=166.11 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=113.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++|+|+|.+|||||||+++|++..+. ++.+|..+..+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~------------------------------------- 201 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE------------------------------------- 201 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEE-------------------------------------
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEE-------------------------------------
Confidence 47999999999999999999876532 22334333332221
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhcc-
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDE- 173 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~- 173 (249)
+. ....+.+||+||.....+ .......++.++.+++++++|+|+++ .+++..+..++.++....
T Consensus 202 ----------~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~ 270 (342)
T 1lnz_A 202 ----------TD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 270 (342)
T ss_dssp ----------CS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred ----------eC-CCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence 01 114689999999764222 22233556777888999999999998 677877776666664422
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871 174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 249 (249)
...++|+++|+||+|+... .+.+.++.+.+. ...+++++||+++.|+++++.+|.+.++
T Consensus 271 ~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~l~---------------~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 271 RLTERPQIIVANKMDMPEA--AENLEAFKEKLT---------------DDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp STTTSCBCBEEECTTSTTH--HHHHHHHHHHCC---------------SCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred hhcCCCEEEEEECccCCCC--HHHHHHHHHHhh---------------cCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 1358999999999999753 233444444332 1157999999999999999999988763
No 122
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=1.3e-22 Score=170.15 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=94.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+++|++|||||||+|+|++.+.....+..+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~g-------------------------------------------- 266 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPG-------------------------------------------- 266 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC--------------------------------------------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--------------------------------------------
Confidence 456789999999999999999998764321111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
.++......+...+..+.+|||||+..+....+.. .....++..+|++++|+|++++.++..+.. ...++... .
T Consensus 267 -tT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~ 342 (476)
T 3gee_A 267 -TTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTE-IRELKAAH--P 342 (476)
T ss_dssp -------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--T
T ss_pred -ceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--C
Confidence 11111111122234569999999987765544321 344567889999999999999888754332 22233222 3
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+......+ ...+.+. . ..+++++||++|.|+++++++|.+.+
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~-~~~l~~~-~----------------~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADAL-IRAIADG-T----------------GTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHH-HHHHHHH-H----------------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CCCEEEEEECcCCCCccchh-HHHHHhc-C----------------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence 79999999999998753332 2222221 1 15799999999999999999998765
No 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=2.8e-22 Score=171.81 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=107.7
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
..+++||+++|.+|||||||+++|++..+. ...||++........ +
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~------------~--------------------- 84 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQA------------P--------------------- 84 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEG------------G---------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecc------------c---------------------
Confidence 567899999999999999999999987764 334454433322200 0
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
.. ..+..........+.+||+||++.+..... .++..+|++++|+|+++..... .|+..+... ..
T Consensus 85 ---~~-~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~------~~l~~~d~ii~V~D~s~~~~~~---~~~~~l~~~--~~ 149 (535)
T 3dpu_A 85 ---NI-KGLENDDELKECLFHFWDFGGQEIMHASHQ------FFMTRSSVYMLLLDSRTDSNKH---YWLRHIEKY--GG 149 (535)
T ss_dssp ---GS-GGGTTCSTTTTCEEEEECCCSCCTTTTTCH------HHHHSSEEEEEEECGGGGGGHH---HHHHHHHHH--SS
T ss_pred ---cc-cceeecCCCceEEEEEEECCcHHHHHHHHH------HHccCCcEEEEEEeCCCchhHH---HHHHHHHHh--CC
Confidence 00 001011123356799999999988877666 4566799999999998764443 355554332 14
Q ss_pred CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.|+++|+||+|+.. ....+++.+.+.... .+++++||++|.|++++++.+.+.+
T Consensus 150 ~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIE-----------------NRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT-----------------TCEEECCC-----CTTHHHHHHHHH
T ss_pred CCCEEEEEECCCcccccccCHHHHHHHHHhcC-----------------CceEEEecCcccCHHHHHHHHHHHH
Confidence 699999999999975 345666777666655 6799999999999999999998765
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.88 E-value=7.2e-23 Score=160.40 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=100.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++|+++|++|+|||||+|+|++.... ...| +.+....
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~-------------------------------------- 41 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERK-------------------------------------- 41 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEE--------------------------------------
Confidence 3579999999999999999999876522 1111 1111000
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhH--H-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK--S-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~--~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
...+.. +..+.+|||||++++.... + ....++.. ..+|++++|+|+++...... +..++..
T Consensus 42 -------~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~d~vi~V~D~t~~e~~~~---~~~~l~~---- 105 (272)
T 3b1v_A 42 -------SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRADSILNVVDATNLERNLY---LTTQLIE---- 105 (272)
T ss_dssp -------EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCCSEEEEEEEGGGHHHHHH---HHHHHHH----
T ss_pred -------EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCCCEEEEEecCCchHhHHH---HHHHHHh----
Confidence 011122 3458899999988775321 1 11122221 46999999999998765433 3334432
Q ss_pred CCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++++||+|+... ....+...+.+.++ ++++++||++|.|++++++++.+.+
T Consensus 106 ~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 106 TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-----------------VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-----------------SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-----------------CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 57999999999998531 11122333444444 7899999999999999999998754
No 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=8.1e-22 Score=147.13 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=116.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..++|+|+|++|||||||+++|++..+. ...||.+...... .
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~-------~------------------------------ 70 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-------S------------------------------ 70 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE-------E------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEE-------E------------------------------
Confidence 3579999999999999999999987754 3444444221111 0
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
..+.+.+..+.+||++|.+++..... .++..++++++|+|.++..++..+..++..+... ...+.
T Consensus 71 --------i~~~g~~~~~~i~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~ 135 (191)
T 1oix_A 71 --------IQVDGKTIKAQIWDTAGLERYRAITS------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNI 135 (191)
T ss_dssp --------EEETTEEEEEEEEEECSCCSSSCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred --------EEECCEEEEEEEEECCCCcchhhhhH------HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence 01122234567899999887766555 4456788999999999998888776666655332 23578
Q ss_pred cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++++||+|+.+ ....+....+..... +.++++||+++.|+++++++|.+.+
T Consensus 136 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-----------------~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNG-----------------LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999965 345566666666544 7899999999999999999998765
No 126
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.88 E-value=3.2e-22 Score=159.85 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=108.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
...||+++|++|||||||+++|++.... .+.+|++.....+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~----------------------------------- 46 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHL----------------------------------- 46 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEE-----------------------------------
Confidence 3579999999999999999999876322 2334443322222
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhh-----hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHH---H
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-----EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSEL---Q 167 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~ 167 (249)
.+. ....+.+||+||++++ ..... .++..+|++++|+|++++.++..+..+. .
T Consensus 47 ------------~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~------~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~ 107 (307)
T 3r7w_A 47 ------------RFL-GNMTLNLWDCGGQDVFMENYFTKQKD------HIFQMVQVLIHVFDVESTEVLKDIEIFAKALK 107 (307)
T ss_dssp ------------EET-TTEEEEEEEECCSHHHHHHHHTTTHH------HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHH
T ss_pred ------------EeC-CceEEEEEECCCcHHHhhhhhhhHHH------HHhccCCEEEEEEECCChhhHHHHHHHHHHHH
Confidence 011 2467899999999887 33333 5567899999999999999998875443 3
Q ss_pred HHHhccCCCCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 168 CLLTDESLASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
++... ..++|+++|+||+|+.+...+ +++.++.+..+ ...++++++||++ .|+.+
T Consensus 108 ~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g--------------~~~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 108 QLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG--------------FPNLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp HHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT--------------CCSCEEEECCTTS-SHHHH
T ss_pred HHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC--------------CCCeEEEEeeecC-ChHHH
Confidence 33221 357999999999999762122 33444444332 1137899999999 89999
Q ss_pred HHHHHhhh
Q psy871 240 GFRWLANY 247 (249)
Q Consensus 240 l~~~l~~~ 247 (249)
.+..+.+.
T Consensus 171 ~~~~iv~~ 178 (307)
T 3r7w_A 171 AWSQIVCS 178 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887764
No 127
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=1.9e-22 Score=169.25 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=106.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
+.++|+++|+||||||||+|+|++.+.....+..+.+....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~--------------------------------------- 282 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVI--------------------------------------- 282 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSC---------------------------------------
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeE---------------------------------------
Confidence 34799999999999999999999875432111111111111
Q ss_pred cceeceeccccccceEEEEEeCCCch-hhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRE-RFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~-~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
...+...+..+.+|||||.. .+....+. ......++..+|++++|+|++++.++.+.. .+ +.+ .
T Consensus 283 ------~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~ 349 (482)
T 1xzp_A 283 ------SEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-IL-ERI-----K 349 (482)
T ss_dssp ------CEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----T
T ss_pred ------EEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HH-HHh-----c
Confidence 01111123468999999987 55432221 122346678899999999999987765532 22 222 4
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++|+++|+||+|+......+++.++.. . ..+++++||++|.|+++++++|.+.+
T Consensus 350 ~~piivV~NK~DL~~~~~~~~~~~~~~-~-----------------~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEKINEEEIKNKLG-T-----------------DRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TSSEEEEEEECSSCCCCCHHHHHHHHT-C-----------------STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCEEEEEECcccccccCHHHHHHHhc-C-----------------CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999977555555544322 1 15799999999999999999998753
No 128
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=2.3e-22 Score=159.37 Aligned_cols=158 Identities=13% Similarity=0.212 Sum_probs=101.7
Q ss_pred eEEEeccCCcchHHHHHHHhcCCCCC----CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ----PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
||+++|..|||||||++++.+..... ..||++.....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-------------------------------------- 42 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-------------------------------------- 42 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--------------------------------------
Confidence 68999999999999999987654332 223333211110
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhh---hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc--c
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE---SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD--E 173 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~---~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~--~ 173 (249)
+....+.+|||+|+++|.. ... .+++.++++++|+|+++. +.....++.+++.. .
T Consensus 43 ------------~~~v~LqIWDTAGQErf~~~~l~~~------~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~ 102 (331)
T 3r7w_B 43 ------------STLIDLAVMELPGQLNYFEPSYDSE------RLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYK 102 (331)
T ss_dssp ------------CSSSCEEEEECCSCSSSCCCSHHHH------HHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHH
T ss_pred ------------ccEEEEEEEECCCchhccchhhhhh------hhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhh
Confidence 1124699999999999853 234 567899999999999997 33333344333221 1
Q ss_pred CCCCCcEEEEEecCCCCCCCCHH----HHHHHh-hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAASEE----EIRQYF-GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...++|+++++||+|+..+..+. ++.... +.+.. .......++++++||++ .++.+.|..+.+.+
T Consensus 103 ~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~---------~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 103 VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE---------LGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS---------SSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh---------hcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 23689999999999998642221 222211 11110 00011358999999998 69999999988764
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=1.1e-21 Score=162.41 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=81.9
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
..+.+|||||++.|..... .++..+|++++|+|+++..++....+++..+... ...|+++++||+|+.+..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~------~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATML------SGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEEEEEECCCCGGGHHHHH------HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred ceEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence 5789999999998877666 6778899999999999976555555455443221 336999999999998642
Q ss_pred CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 194 SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+..+.+.... .......++++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~~~~i~~~l----------~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 146 EALSQYRQIKQFT----------KGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHHHHHH----------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH----------HhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2222222222111 01122347899999999999999999998754
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.87 E-value=1.7e-22 Score=158.86 Aligned_cols=160 Identities=17% Similarity=0.096 Sum_probs=101.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
|+.++|+++|++|||||||+|+|++..+.. ..|+.
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~-------------------------------------------- 36 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGV-------------------------------------------- 36 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTS--------------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCe--------------------------------------------
Confidence 467899999999999999999998754320 01110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcc--ccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD--ESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
+.......+...+..+.+||+||+..+........-.-.+ ...+|++++|+|+++...... ++.++...
T Consensus 37 ---t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~---~~~~~~~~--- 107 (271)
T 3k53_A 37 ---TVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLF---LTLELFEM--- 107 (271)
T ss_dssp ---SCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHH---HHHHHHHT---
T ss_pred ---EEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHH---HHHHHHhc---
Confidence 1111111122234468999999988765522111001122 267999999999999643322 33333331
Q ss_pred CCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...|+++|+||+|+.+. ....+...+.+.++ ++++++||++|.|++++++.+.+.+
T Consensus 108 ~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 108 EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-----------------VPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-----------------SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-----------------CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 23999999999997531 00011333444444 7899999999999999999998653
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=1.9e-21 Score=154.74 Aligned_cols=165 Identities=14% Similarity=0.161 Sum_probs=105.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+..+|+++|++|||||||+|+|++..+....+..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~-------------------------------------------- 41 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ-------------------------------------------- 41 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS--------------------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCC--------------------------------------------
Confidence 456789999999999999999998765431111110
Q ss_pred ccceeceeccccccceEEEEEeCCCch-hhh-hhHHHH-hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRE-RFE-ESKSEL-QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~-~~~-~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
.++......+...+..+.++||||+. ... .....+ ......+..+|++++|+|+++ +.....++.+.+..
T Consensus 42 -tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--- 114 (301)
T 1ega_A 42 -TTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--- 114 (301)
T ss_dssp -CCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---
T ss_pred -cceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---
Confidence 00111111122335678999999986 322 222111 223466788999999999977 32323344444432
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.+.|+++++||+|+... ...+.+.++.+.. ......++++||++|.|++++++.+.+.+
T Consensus 115 ~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~------------~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQE--KADLLPHLQFLAS------------QMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SSSCEEEEEESTTTCCC--HHHHHHHHHHHHT------------TSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred cCCCEEEEEECcccCcc--HHHHHHHHHHHHH------------hcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999999752 3444444443321 00113799999999999999999998754
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=4.2e-21 Score=156.54 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=105.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~ 95 (249)
.+.++|+++|++|||||||+|+|++..+.. ..+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~----------------------------------------- 203 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG----------------------------------------- 203 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSC-----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeec-----------------------------------------
Confidence 467899999999999999999998754210 000100
Q ss_pred CCcccceeceeccccccceEEEEEeCCCchhhhh--hHHH-HhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHH
Q psy871 96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE--SKSE-LQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLL 170 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~~~~-~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~ 170 (249)
.....+......+.+|||||...... .... ..........+|++++|+|+++.. ++.....++..+.
T Consensus 204 --------~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 204 --------INVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp --------EEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred --------eeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 00011112245689999999754311 0000 111223345699999999999877 5565555666665
Q ss_pred hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
... .+.|+++|+||+|+......++..+.+.... .+++++||++|+|++++++++.+.+
T Consensus 276 ~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 276 GEF--KDLPFLVVINKIDVADEENIKRLEKFVKEKG-----------------LNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp HHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHHTT-----------------CCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred Hhc--CCCCEEEEEECcccCChHHHHHHHHHHHhcC-----------------CCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 432 2799999999999976422333444433322 6899999999999999999998765
No 133
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=6.8e-22 Score=150.55 Aligned_cols=126 Identities=23% Similarity=0.321 Sum_probs=87.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+++|++|||||||+++|++..+....++..+.....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------------------------------------- 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------------------------------------
Confidence 467899999999999999999999876543111111110000
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC-ChhhhHhhHHHHHHHHhcc---C
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS-DRERFEESKSELQCLLTDE---S 174 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~ 174 (249)
+ ....+.+||+||++.+....... +......+|++++|+|++ ++.++.....++.+++... .
T Consensus 52 ----------~--~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (218)
T 1nrj_B 52 ----------Y--DGSGVTLVDFPGHVKLRYKLSDY--LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 117 (218)
T ss_dssp ----------G--GGSSCEEEECCCCGGGTHHHHHH--HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----------e--eCceEEEEECCCcHHHHHHHHHH--HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccc
Confidence 0 23458899999998886655411 111223489999999999 8888888877887776542 2
Q ss_pred CCCCcEEEEEecCCCCCCCCHH
Q psy871 175 LASCPVLILGNKIDKHGAASEE 196 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~ 196 (249)
..++|+++|+||+|+......+
T Consensus 118 ~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp TTCCCEEEEEECTTSTTCCCHH
T ss_pred cCCCCEEEEEEchHhcccCCHH
Confidence 3689999999999998765533
No 134
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=9.2e-22 Score=164.22 Aligned_cols=187 Identities=18% Similarity=0.193 Sum_probs=108.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++++|+++|++++|||||+++|+.........+........ ...|+.++..++......... ..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~--------------~~~g~~~~~~a~~~d~~~~er-~~ 79 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREA--------------KEKNRETWYLSWALDTNQEER-DK 79 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH--------------HhccccchhhhhhhccchhHh-hc
Confidence 567899999999999999999997543322111111000000 111222232222222222111 12
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh---hH---hhHHHHHHHHhc
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER---FE---ESKSELQCLLTD 172 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~---~~~~~~~~~~~~ 172 (249)
+.+.......+...+..+.+|||||+++|..... .++..+|++++|+|+++... |. ...+.+... ..
T Consensus 80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~------~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~ 152 (439)
T 3j2k_7 80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMI------GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT 152 (439)
T ss_pred CceEEEeEEEEecCCeEEEEEECCChHHHHHHHH------hhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH
Confidence 2333333334455567899999999998866655 66788999999999998532 11 122222222 11
Q ss_pred cCCCCCc-EEEEEecCCCCCCCC--------HHHHHHHhhhcccccCcccCCCCCCC-CCceeEEEeeeccccchHHHHH
Q psy871 173 ESLASCP-VLILGNKIDKHGAAS--------EEEIRQYFGLYGLTTGKVATPRSEMS-GRPIELFMCSVLMRQGYGDGFR 242 (249)
Q Consensus 173 ~~~~~~p-~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~~ 242 (249)
.++| +++++||+|+..... .+++..+++..+ +. ...++++++||++|.|++++.+
T Consensus 153 ---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 ---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG------------FNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhc------------ccccCCeeEEEeeccCCcccccccc
Confidence 4677 999999999964211 122333333332 11 1247899999999999998544
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=2.2e-21 Score=162.34 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=96.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~ 101 (249)
++|+++|.||||||||+|+|++.......++.+.+....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~----------------------------------------- 40 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV----------------------------------------- 40 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCS-----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCcccee-----------------------------------------
Confidence 589999999999999999998765432221111111111
Q ss_pred eeceeccccccceEEEEEeCCCchhhhh--h-HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 102 RRVWKDYFPAVDAIVFLVDTSDRERFEE--S-KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
.......+..+.+|||+|.+.... . .........+++.+|++++|+|+++..+..+ .++..+++. .++
T Consensus 41 ----~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~ 111 (439)
T 1mky_A 41 ----QDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STV 111 (439)
T ss_dssp ----EEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTC
T ss_pred ----eEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCC
Confidence 111112244688999999775321 1 1112334467789999999999987644433 244444443 479
Q ss_pred cEEEEEecCCCCCCCCHHHH-HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 179 PVLILGNKIDKHGAASEEEI-RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 179 p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
|+++|+||+|+.... ..+. .++. ... ..+++++||++|.|++++++++.+.+
T Consensus 112 p~ilv~NK~D~~~~~-~~~~~~~~~-~lg----------------~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 112 DTILVANKAENLREF-EREVKPELY-SLG----------------FGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp CEEEEEESCCSHHHH-HHHTHHHHG-GGS----------------SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCcccc-HHHHHHHHH-hcC----------------CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 999999999985320 1122 2222 112 12589999999999999999997654
No 136
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=3.5e-22 Score=168.98 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=106.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+++|++|+|||||+++|++..+. ...+++.......
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~------------------------------------- 44 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAF------------------------------------- 44 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSC-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEE-------------------------------------
Confidence 36789999999999999999999875543 1111111111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
...+ ..+..+.+|||||++.|...+. .++..+|++++|+|+++....+... .+.... ..+
T Consensus 45 --------~v~~-~~g~~i~~iDTPGhe~f~~~~~------~~~~~aD~vILVVDa~dg~~~qt~e-~l~~~~----~~~ 104 (537)
T 3izy_P 45 --------LVSL-PSGEKITFLDTPGHAAFSAMRA------RGTQVTDIVILVVAADDGVMKQTVE-SIQHAK----DAH 104 (537)
T ss_dssp --------CBCS-SCSSCCBCEECSSSCCTTTSBB------SSSBSBSSCEEECBSSSCCCHHHHH-HHHHHH----TTT
T ss_pred --------EEEe-CCCCEEEEEECCChHHHHHHHH------HHHccCCEEEEEEECCCCccHHHHH-HHHHHH----HcC
Confidence 0001 1123578999999999888777 7788999999999999865554432 333322 267
Q ss_pred CcEEEEEecCCCCCCCC---HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAAS---EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+++++||+|+.+... .+++... .... .......+++++||++|.|+++++++|...+
T Consensus 105 vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~~-----------e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 105 VPIVLAINKCDKAEADPEKVKKELLAY-DVVC-----------EDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp CCEEECCBSGGGTTTSCCSSSSHHHHT-TSCC-----------CCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred CcEEEEEecccccccchHHHHHHHHhh-hhhH-----------HhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 89999999999975211 1222211 1000 0112347899999999999999999998754
No 137
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=5.8e-22 Score=167.59 Aligned_cols=188 Identities=20% Similarity=0.141 Sum_probs=102.2
Q ss_pred cccccceecceEEEeccCCcchHHHHHHHhcCCCCCCC---CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcC
Q psy871 13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV---PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 89 (249)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~ 89 (249)
.++...++.++|+++|++|+|||||+++|++....... +++.... ...|+.++..++...
T Consensus 25 ~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~-----------------~~~g~~~~~~~~~~d 87 (483)
T 3p26_A 25 AFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRES-----------------ETMGKSSFKFAWIMD 87 (483)
T ss_dssp HHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC----------------------------------
T ss_pred HHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHH-----------------HhcCCCcchhhhhhc
Confidence 34444677899999999999999999999865322111 0110000 011222222222211
Q ss_pred Ccc-cccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHh-----hH
Q psy871 90 RLA-QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-----SK 163 (249)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-----~~ 163 (249)
... +. ..+.+.......+...+..+.+|||||+++|..... .++..+|++++|+|+++...+.. ..
T Consensus 88 ~~~~e~--~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~------~~~~~aD~~llVvDa~~g~~~~~~~~~~qt 159 (483)
T 3p26_A 88 QTNEER--ERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAI------MGISQADMAILCVDCSTNAFESGFDLDGQT 159 (483)
T ss_dssp ---------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHH------HHHTTCSEEEEEEECCC------CCCCHHH
T ss_pred cchhHh--hcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHH------HhhhhCCEEEEEEECCCCccccccchhhhH
Confidence 111 11 112222222233445567899999999998876666 67788999999999998644321 11
Q ss_pred HHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871 164 SELQCLLTDESLASCPVLILGNKIDKHGA--ASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237 (249)
Q Consensus 164 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 237 (249)
.+...++.. ....|+++|+||+|+.+. ...+ ++..+++... .....++++++||++|.|+
T Consensus 160 ~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 160 KEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGV 225 (483)
T ss_dssp HHHHHHHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGEEEEECCSSSCTTS
T ss_pred HHHHHHHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeeecCCCc
Confidence 122222222 123569999999999762 1122 2333333332 1123479999999999999
Q ss_pred HH
Q psy871 238 GD 239 (249)
Q Consensus 238 ~~ 239 (249)
++
T Consensus 226 ~e 227 (483)
T 3p26_A 226 YK 227 (483)
T ss_dssp SS
T ss_pred cc
Confidence 85
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=2e-21 Score=162.39 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=93.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+++|++|||||||+|+|++.+.....+..+.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt------------------------------------------- 258 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGT------------------------------------------- 258 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTC-------------------------------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCe-------------------------------------------
Confidence 4567899999999999999999987543321111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
++......+...+..+.+|||||+..+....+. .......+..+|++++|+|++++.+... ..++..+ .
T Consensus 259 --T~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~ 329 (462)
T 3geh_A 259 --TRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------K 329 (462)
T ss_dssp --CHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------T
T ss_pred --eEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------c
Confidence 011111111122346899999998765544332 1344567788999999999998765544 2233333 3
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..|+++|+||+|+....... ..+.+ ....+++++||++|.|+++++++|.+.+
T Consensus 330 ~~piivV~NK~Dl~~~~~~~----~~~~~---------------~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 330 HRPLILVMNKIDLVEKQLIT----SLEYP---------------ENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp TSCEEEEEECTTSSCGGGST----TCCCC---------------TTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcchhhH----HHHHh---------------ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999997631111 01110 1236799999999999999999998765
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.85 E-value=6.1e-22 Score=163.53 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=103.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
...++|+++|++|+|||||+++|++..+....++.+.+....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~-------------------------------------- 73 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPV-------------------------------------- 73 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCC--------------------------------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeE--------------------------------------
Confidence 346799999999999999999998765432111111110000
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
.....+ .....+.+|||||++.+..... ........+..+|++++|+|++..... ..++..+.. .+
T Consensus 74 -----~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~---~~~l~~l~~----~~ 140 (423)
T 3qq5_A 74 -----YKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE---DDVVNLFKE----ME 140 (423)
T ss_dssp -----EEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHH---HHHHHHHHH----TT
T ss_pred -----EEEEEE-CCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHH---HHHHHHHHh----cC
Confidence 000001 1123689999999987765432 123344567889999999999333222 224444332 48
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+|+++|+||+|+......+...++.+..+ ++++++||++|.|+++++++|.+.+
T Consensus 141 ~piIvV~NK~Dl~~~~~~~~~~~l~~~~g-----------------~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAEELKGLYESRYE-----------------AKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CCEEEECCCCTTTTCCCTHHHHHSSCCTT-----------------CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCEEEEEeCcCCCCccHHHHHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999987655444444333333 6899999999999999999998876
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=1.2e-20 Score=159.15 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=103.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.|++++|+++|++++|||||+++|++...... .... . ..... +
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~-------~d~~----~-------~e~~~-------------------G 58 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSA-------HDKL----P-------ESQKR-------------------G 58 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------------------------
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccc-------cccc----c-------ccccC-------------------c
Confidence 36789999999999999999999986541000 0000 0 00000 1
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDES 174 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~ 174 (249)
. +.......+...+..+.+|||||++.|..... .++..+|++++|+|+++ +.+...+ . ++..
T Consensus 59 i--Ti~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~------~~~~~aD~~ilVvda~~g~~~qt~e~l----~-~~~~-- 123 (482)
T 1wb1_A 59 I--TIDIGFSAFKLENYRITLVDAPGHADLIRAVV------SAADIIDLALIVVDAKEGPKTQTGEHM----L-ILDH-- 123 (482)
T ss_dssp -------CCCEEEETTEEEEECCCSSHHHHHHHHH------HHTTSCCEEEEEEETTTCSCHHHHHHH----H-HHHH--
T ss_pred c--EEecceEEEEECCEEEEEEECCChHHHHHHHH------HHHhhCCEEEEEEecCCCccHHHHHHH----H-HHHH--
Confidence 0 10010011112346799999999988765554 67788999999999988 3333332 2 2222
Q ss_pred CCCCcEEEEEecCCCCCCCCHHH----HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 175 LASCPVLILGNKIDKHGAASEEE----IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++++||+|+.++...++ +.++++... .....+++++||++|.|+++++++|.+.+
T Consensus 124 -~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~-------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 124 -FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH-------------NLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp -TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS-------------SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc-------------ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 5789999999999986322222 223332220 11247899999999999999999998754
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=1.6e-19 Score=149.65 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=71.2
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
..+.+|||||++.|..... ..+..+|++++|+|+++........+.+..+ .. ....|+++++||+|+.+..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~------~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~--l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATML------SGASLMDGAILVIAANEPCPQPQTKEHLMAL-EI--LGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEEEEECSSHHHHHHHHH------TTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HH--TTCCCEEEEEECTTSSCTT
T ss_pred cEEEEEECCCHHHHHHHHH------HhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HH--cCCCeEEEEEEccCCCCHH
Confidence 5789999999988765444 6778899999999999643111111122222 11 1235899999999997643
Q ss_pred C----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 194 S----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 194 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
. .+++.++++... ....+++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~~~~i~~~l~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTI--------------AENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTTTHHHHHHHHHTTST--------------TTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcC--------------CCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2 344444444321 2347899999999999999999998754
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=1.9e-19 Score=146.48 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=101.4
Q ss_pred ce-EEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 22 GK-LLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 22 ~~-i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+ |+++|++|||||||+|+|++..+. ...+|.++..+.+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i------------------------------------- 221 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAI------------------------------------- 221 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEE-------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEE-------------------------------------
Confidence 44 999999999999999999876542 1122222221111
Q ss_pred cccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHHhcc
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLLTDE 173 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~ 173 (249)
.-.+..+.+|||+|.... ....+....++..+..+|++++|+|++++. ...... .+.+++...
T Consensus 222 ------------~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l 288 (364)
T 2qtf_A 222 ------------PINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQ-SSFEILREI 288 (364)
T ss_dssp ------------EETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHH
T ss_pred ------------EECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHh
Confidence 111245789999996321 122222344556678899999999999876 343332 233444444
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHH----HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAASEEE----IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+.|+++|+||+|+.+.. ..+ +..+.+.+. ....+++++||++|.|+++++++|.+.+
T Consensus 289 ~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~--------------~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 289 GVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY--------------SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp TCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC--------------SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc--------------CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 44679999999999997643 222 111222220 0125789999999999999999998754
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=2.4e-20 Score=158.40 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=58.2
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+..+.+|||||+..|..... .++..+|++++|+|+++....+... .+... .. .++|+++|+||+|+.
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~------~~l~~aD~allVvDa~~g~~~~t~~-~~~~~-~~---~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 79 YKDYLINLLDTPGHADFTEDTY------RTLTAVDSALMVIDAAKGVEPRTIK-LMEVC-RL---RHTPIMTFINKMDRD 147 (528)
T ss_dssp ETTEEEEEECCCCSTTCCHHHH------HGGGGCSEEEEEEETTTCSCHHHHH-HHHHH-HT---TTCCEEEEEECTTSC
T ss_pred eCCEEEEEEECCCchhHHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-HH---cCCCEEEEEeCCCCc
Confidence 3467799999999998877655 7788999999999999876655543 33332 22 679999999999997
Q ss_pred CCCCHHHHHH
Q psy871 191 GAASEEEIRQ 200 (249)
Q Consensus 191 ~~~~~~~~~~ 200 (249)
.....+.+.+
T Consensus 148 ~~~~~~~l~e 157 (528)
T 3tr5_A 148 TRPSIELLDE 157 (528)
T ss_dssp CSCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 6543333333
No 144
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=2.3e-20 Score=154.68 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=105.8
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
-.++.++|+++|++|+|||||+++|++......... .. ...+ .+... ..+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~------~~----------------~~~~-~~d~~----~~e~-- 57 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EV----------------KDYG-DIDKA----PEER-- 57 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS------CC----------------CCHH-HHSCS----HHHH--
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc------cc----------------cchh-hccCC----HHHH--
Confidence 346678999999999999999999976310000000 00 0000 00000 0000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (249)
..+.+.......+...+..+.+|||||+++|..... .++..+|++++|+|+++....+. .+++... .. .
T Consensus 58 ~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~------~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~-~~---~ 126 (405)
T 2c78_A 58 ARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMI------TGAAQMDGAILVVSAADGPMPQT-REHILLA-RQ---V 126 (405)
T ss_dssp HHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHH------HHHTTCSSEEEEEETTTCCCHHH-HHHHHHH-HH---T
T ss_pred HcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHH------HHHHHCCEEEEEEECCCCCcHHH-HHHHHHH-HH---c
Confidence 001111111122333456789999999998865555 66788999999999998654333 3344333 22 5
Q ss_pred CCc-EEEEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc--------------
Q psy871 177 SCP-VLILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-------------- 236 (249)
Q Consensus 177 ~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-------------- 236 (249)
++| +++++||+|+.+... . +++.++++... ......+++++||++|.|
T Consensus 127 ~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~ 194 (405)
T 2c78_A 127 GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE------------FPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194 (405)
T ss_dssp TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCH
T ss_pred CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc------------ccccCCCEEEccHHHhhhhhccccccccCCCc
Confidence 788 889999999985211 1 13334443332 111247899999999988
Q ss_pred ----hHHHHHHHhhhc
Q psy871 237 ----YGDGFRWLANYI 248 (249)
Q Consensus 237 ----v~~l~~~l~~~i 248 (249)
++++++.|.+++
T Consensus 195 ~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 195 WVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHhhc
Confidence 788888887654
No 145
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-21 Score=168.13 Aligned_cols=193 Identities=18% Similarity=0.156 Sum_probs=105.6
Q ss_pred hhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCC
Q psy871 11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDR 90 (249)
Q Consensus 11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~ 90 (249)
...++.-.+++++|+++|++|+|||||+++|++........++....... .+ .|.....-..+...+...
T Consensus 157 l~~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~------~~---~g~~~~~~a~~~d~~~~e- 226 (611)
T 3izq_1 157 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRES------ET---MGKSSFKFAWIMDQTNEE- 226 (611)
T ss_dssp ----CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHS------SC---SSSSCCSSSHHHHHHHHH-
T ss_pred HHHHHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhh------hh---ccccccceeeeeccchhh-
Confidence 34455556788999999999999999999998764332111100000000 00 000000001111111100
Q ss_pred cccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh---HhhHH
Q psy871 91 LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF---EESKS 164 (249)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~ 164 (249)
. ..+.+.......+...+..+.+|||||+++|..... .++..+|++++|+|+++.. ++ ....+
T Consensus 227 ---~--~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~------~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e 295 (611)
T 3izq_1 227 ---R--ERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAI------MGISQADMAILCVDCSTNAFESGFDLDGQTKE 295 (611)
T ss_dssp ---H--HTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHT------TTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred ---h--hCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHH------HHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence 0 111222222233344566899999999988766555 7788999999999999842 11 11111
Q ss_pred HHHHHHhccCCCC-CcEEEEEecCCCCCC--CC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871 165 ELQCLLTDESLAS-CPVLILGNKIDKHGA--AS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237 (249)
Q Consensus 165 ~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 237 (249)
.+. ++.. .+ .|+++|+||+|+.+. .. .+++..++...+ .....++++++||++|.|+
T Consensus 296 ~l~-~~~~---lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g------------~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 296 HML-LASS---LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp HHH-HHHT---TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCEEEECCTTTCTTT
T ss_pred HHH-HHHH---cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhc------------ccccCccEEeeecccCCCc
Confidence 222 2222 34 459999999999762 11 223333333333 1122478999999999999
Q ss_pred HHH
Q psy871 238 GDG 240 (249)
Q Consensus 238 ~~l 240 (249)
+++
T Consensus 360 ~el 362 (611)
T 3izq_1 360 YKI 362 (611)
T ss_dssp SSC
T ss_pred ccc
Confidence 865
No 146
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=4.7e-20 Score=158.37 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=106.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+++++|+++|++++|||||+++|++..+....+ .+....+.. ...+ . ......
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~----------~~~~-----~-~~~~~~--------- 56 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGAT----------EIPM-----D-VIEGIC--------- 56 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEE----------EEEH-----H-HHHHHS---------
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeE----------EEee-----c-hhhhhc---------
Confidence 3578999999999999999999998754432222 011011110 0000 0 000000
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhcc
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDE 173 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~ 173 (249)
+. .... .........+.+|||||++.|...+. .++..+|++++|+|+++ +.++..+. .+ ..
T Consensus 57 ~~--~~~~--~~v~~~~~~i~liDTPGhe~F~~~~~------r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~- 120 (594)
T 1g7s_A 57 GD--FLKK--FSIRETLPGLFFIDTPGHEAFTTLRK------RGGALADLAILIVDINEGFKPQTQEALN----IL-RM- 120 (594)
T ss_dssp CG--GGGG--CGGGGTCCEEEEECCCTTSCCTTSBC------SSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH-
T ss_pred cc--cccc--cccccccCCEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH-
Confidence 00 0000 00011123589999999999987766 67788999999999999 55554332 22 22
Q ss_pred CCCCCcEEEEEecCCCCCCCC--------------HHHH-----------HHHhhhcccccCcccCCCCCCCCCceeEEE
Q psy871 174 SLASCPVLILGNKIDKHGAAS--------------EEEI-----------RQYFGLYGLTTGKVATPRSEMSGRPIELFM 228 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~~--------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (249)
.++|+++++||+|+..... .+++ .+.+.......+ ...... .....+++++
T Consensus 121 --~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e-~~~~l~-~~~~~vpvv~ 196 (594)
T 1g7s_A 121 --YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESE-RFDRVT-DFASQVSIIP 196 (594)
T ss_dssp --TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEE-EGGGCS-CTTTEEEEEE
T ss_pred --cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchH-HHHHHH-hccCcceEEE
Confidence 6799999999999975211 0111 111111110000 000000 0124579999
Q ss_pred eeeccccchHHHHHHHhhh
Q psy871 229 CSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 229 ~Sa~~g~gv~~l~~~l~~~ 247 (249)
+||++|.|+++++++|...
T Consensus 197 vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 197 ISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeccCCCCchhHHHHHHhh
Confidence 9999999999999998764
No 147
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=7.7e-20 Score=145.74 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=112.1
Q ss_pred HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeee-eceEEEEcCCC---
Q psy871 4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTK-SGKLLFLGLDN--- 76 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~-~~~~~~~g~~~--- 76 (249)
+-+.+.+.+..+|.. .+.++|+|+|.+|||||||+|+|++..+..... ........+.+-.. .....+....+
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 445566667777665 567899999999999999999999887642111 11111111100000 00011111111
Q ss_pred CchhHHHHHHhcC--CcccccCCcccceeceeccccccceEEEEEeCCCchhh------hhhH-HHHhhhhccccccceE
Q psy871 77 AGKTTLLHMLKDD--RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF------EESK-SELQCLLTDESLASSI 147 (249)
Q Consensus 77 ~Gkssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~------~~~~-~~~~~~~~~~~~~d~i 147 (249)
.-.......+... .......+........ .........+.+|||||.... .... ........++..++.+
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~-~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINL-RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCL 165 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEE-EEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEE-EEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeE
Confidence 1111111111000 0000000100000000 001111246899999996531 1111 1111222455567766
Q ss_pred E-EEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeE
Q psy871 148 V-FLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIEL 226 (249)
Q Consensus 148 i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (249)
+ +|+|+++.........++..+ . ..+.|+++|+||+|+.+... ...+.++... ........++
T Consensus 166 il~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~----------~~~~~~~~~v 229 (299)
T 2aka_B 166 ILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGT--DARDVLENKL----------LPLRRGYIGV 229 (299)
T ss_dssp EEEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTC--CCHHHHTTCS----------SCCTTCEEEC
T ss_pred EEEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCc--hHHHHHhCCc----------CcCCCCcEEE
Confidence 5 799998865444332233332 2 25789999999999976422 0111222110 0011123579
Q ss_pred EEeeeccccchHHHHHHHhh
Q psy871 227 FMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 227 ~~~Sa~~g~gv~~l~~~l~~ 246 (249)
+++||++|.|+++++++|.+
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHH
T ss_pred ECCChhhccccccHHHHHHH
Confidence 99999999999999998865
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=3.2e-20 Score=153.31 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=79.0
Q ss_pred cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCC
Q psy871 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKID 188 (249)
Q Consensus 110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 188 (249)
...+..+.+|||||++.|..... .++..+|++++|+|+++....+... .+.. +.. .++| +++++||+|
T Consensus 62 ~~~~~~~~iiDtpG~~~f~~~~~------~~~~~aD~~ilVvda~~g~~~qt~e-~l~~-~~~---~~vp~iivviNK~D 130 (397)
T 1d2e_A 62 STAARHYAHTDCPGHADYVKNMI------TGTAPLDGCILVVAANDGPMPQTRE-HLLL-ARQ---IGVEHVVVYVNKAD 130 (397)
T ss_dssp ECSSCEEEEEECSSHHHHHHHHH------HTSSCCSEEEEEEETTTCSCHHHHH-HHHH-HHH---TTCCCEEEEEECGG
T ss_pred ccCCeEEEEEECCChHHHHHHHH------hhHhhCCEEEEEEECCCCCCHHHHH-HHHH-HHH---cCCCeEEEEEECcc
Confidence 33456789999999998766554 6678999999999999854333322 3322 222 5788 689999999
Q ss_pred CCCCCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc----------hHHHHHHHhhhc
Q psy871 189 KHGAAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG----------YGDGFRWLANYI 248 (249)
Q Consensus 189 l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g----------v~~l~~~l~~~i 248 (249)
+.+... .+++.++++... .....++++++||++|.| ++++++.|.+.+
T Consensus 131 l~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 131 AVQDSEMVELVELEIRELLTEFG------------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcC------------CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 975211 123444444332 112247899999999874 889999987754
No 149
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=2.5e-20 Score=156.46 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=102.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.|+++|+++|++++|||||+++|++..+.... +.+.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT------------------------------------------- 38 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGIT------------------------------------------- 38 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCC-------------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCee-------------------------------------------
Confidence 47889999999999999999999764432100 0000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (249)
..... ..+...+..+.+|||||++.|...+. .++..+|++++|+|+++....+... .+... .. .+
T Consensus 39 --~~i~~--~~v~~~~~~i~~iDTPGhe~f~~~~~------~~~~~aD~aILVVda~~g~~~qT~e-~l~~~-~~---~~ 103 (501)
T 1zo1_I 39 --QHIGA--YHVETENGMITFLDTPGHAAFTSMRA------RGAQATDIVVLVVAADDGVMPQTIE-AIQHA-KA---AQ 103 (501)
T ss_dssp --CCSSC--CCCCTTSSCCCEECCCTTTCCTTSBC------SSSBSCSSEEEEEETTTBSCTTTHH-HHHHH-HH---TT
T ss_pred --EeEEE--EEEEECCEEEEEEECCCcHHHHHHHH------HHHhhCCEEEEEeecccCccHHHHH-HHHHH-Hh---cC
Confidence 00000 01111233578999999999887766 7788999999999998843322222 23222 22 67
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+|+++++||+|+..... +++.+.+.... ... +.....++++++||++|.|+++++++|...
T Consensus 104 vPiIVviNKiDl~~~~~-~~v~~~l~~~~-------~~~-~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 104 VPVVVAVNKIDKPEADP-DRVKNELSQYG-------ILP-EEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCEEEEEECSSSSTTCC-CCTTCCCCCCC-------CCT-TCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ceEEEEEEeccccccCH-HHHHHHHHHhh-------hhH-HHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 99999999999975311 11111111000 000 111134799999999999999999998753
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=3.8e-20 Score=154.85 Aligned_cols=166 Identities=15% Similarity=0.074 Sum_probs=99.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
..++|+++|++|||||||+|+|++.......+..+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~------------------------------------------ 216 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR------------------------------------------ 216 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC----------------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcC------------------------------------------
Confidence 35799999999999999999998765421111111000
Q ss_pred cceeceeccccccceEEEEEeCCCchhhhhhH-HHH-----hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SEL-----QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~-----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 173 (249)
......+...+..+.+|||+|..+..... +.. ......+..+|++++|+|+++..+..+. .+...+..
T Consensus 217 ---d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~- 290 (439)
T 1mky_A 217 ---DPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER- 290 (439)
T ss_dssp -----CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH-
T ss_pred ---CceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH-
Confidence 00001111123357889999975443332 110 1123456789999999999986555542 33444333
Q ss_pred CCCCCcEEEEEecCCCCCCC--CHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 174 SLASCPVLILGNKIDKHGAA--SEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 174 ~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.++|+++|+||+|+.+.. ..+++.+.+.. +. .....+++++||++|.|++++++.+.+.+
T Consensus 291 --~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 291 --RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY-------------FIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp --TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG-------------GGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc-------------cCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999997632 23444333321 11 01236899999999999999999987643
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.82 E-value=1.8e-19 Score=149.60 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=74.8
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
..+.+|||||++.|..... ..+..+|++++|+|+++........+.+..+... ...|+++++||+|+.+..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~------~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTML------AGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEEEEEECSSHHHHHHHHH------HCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred cEEEEEECCChHHHHHHHH------hhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHH
Confidence 5689999999988765444 6678899999999999643111111122222111 336899999999998632
Q ss_pred CH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 194 SE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 194 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.. +++.++++.. .....+++++||++|.|+++++++|.+.+
T Consensus 154 ~~~~~~~~i~~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 154 KALENYRQIKEFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHHHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 11 2222222211 12347899999999999999999998754
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.82 E-value=6.2e-20 Score=143.44 Aligned_cols=169 Identities=10% Similarity=0.101 Sum_probs=98.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCC--CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP 96 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~ 96 (249)
.+.++|+|+|++|||||||+|+|++...... .|+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~------------------------------------------- 56 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQT------------------------------------------- 56 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCC-------------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-------------------------------------------
Confidence 4568999999999999999999987653211 1110
Q ss_pred CcccceeceeccccccceEEEEEeCCCchhhhhhHHH-----HhhhhccccccceEEEEEECCChhhh-HhhHHHHHHHH
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLL 170 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~ 170 (249)
.+...........+..+.+|||||+..+...... ......++..+|++++|+|+++.... ..+..++.++.
T Consensus 57 ---~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~ 133 (260)
T 2xtp_A 57 ---LTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF 133 (260)
T ss_dssp ---CCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH
T ss_pred ---eeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 0000000111122456899999998765432221 22333467889999999999862221 11222333332
Q ss_pred hccCCCCCcEEEEEe-cCCCCCCCCHHH---------HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 171 TDESLASCPVLILGN-KIDKHGAASEEE---------IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 171 ~~~~~~~~p~ivv~n-K~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
.. ....|.++++| |+|+... ...+ +.+.++.+.. ....+..+++||++|.|++++
T Consensus 134 ~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 134 GE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGG------------RICAFNNRAEGSNQDDQVKEL 198 (260)
T ss_dssp CG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTT------------CEEECCTTCCHHHHHHHHHHH
T ss_pred Cc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCC------------eEEEecCcccccccHHHHHHH
Confidence 11 01467777777 9999753 3322 2223443330 000011188999999999999
Q ss_pred HHHHhhhc
Q psy871 241 FRWLANYI 248 (249)
Q Consensus 241 ~~~l~~~i 248 (249)
+++|.+.+
T Consensus 199 ~~~i~~~~ 206 (260)
T 2xtp_A 199 MDCIEDLL 206 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.82 E-value=1.6e-19 Score=154.75 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=82.2
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
....+.+|||||+..|..... .++..+|++++|+|+++....+....+.... . .++|+++++||+|+..
T Consensus 71 ~~~~inliDTPGh~dF~~ev~------r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~--~---~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVS------RALAACEGALLLIDASQGIEAQTVANFWKAV--E---QDLVIIPVINKIDLPS 139 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHH------HHHHTCSEEEEEEETTTBCCHHHHHHHHHHH--H---TTCEEEEEEECTTSTT
T ss_pred CeEEEEEEECCCcHhHHHHHH------HHHHhCCEEEEEEECCCCccHHHHHHHHHHH--H---CCCCEEEEEeccCccc
Confidence 346788999999999877655 5678899999999999987766654333322 2 6899999999999987
Q ss_pred CCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.. .++..+.+. .+. ....+++++||++|.|++++++++.+.+
T Consensus 140 a~-~~~v~~el~~~lg--------------~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 140 AD-VDRVKKQIEEVLG--------------LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp CC-HHHHHHHHHHTSC--------------CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred cC-HHHHHHHHHHhhC--------------CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 53 333333332 222 1123589999999999999999998765
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.82 E-value=9.7e-20 Score=156.29 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=82.4
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.+|||||+..|..... .++..+|++++|+|+++...++....+.... . .++|+++++||+|+..
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~------~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVS------RSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHH------HHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTT
T ss_pred CeEEEEEEECCCchHHHHHHH------HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccc
Confidence 346789999999998877666 6678899999999999977766655443332 2 5789999999999987
Q ss_pred CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....+...++.+.+. ....+++++||++|.|++++++++.+.+
T Consensus 138 a~~~~v~~ei~~~lg--------------~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 138 ADPERVAEEIEDIVG--------------IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp CCHHHHHHHHHHHTC--------------CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhC--------------CCcceEEEeecccCCCchhHHHHHhhcC
Confidence 532222333333322 1113589999999999999999998765
No 155
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.82 E-value=4.7e-22 Score=171.25 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=88.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++.++|+++|++|+|||||+++|+.........+..... ......|+.++...+....+.... ..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~--------------~~~~~~g~~~~~~~~~~D~~~~E~-~~ 239 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLH--------------NEAANSGKGSFSYAWLLDTTEEER-AR 239 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHH--------------HhHhhcCCcchhhhhhhccchhhh-cC
Confidence 456799999999999999999997543221111110000 001112333332222222221110 11
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh--Hh-hHHHHHHHHhc
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF--EE-SKSELQCLLTD 172 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~--~~-~~~~~~~~~~~ 172 (249)
+.+.......+...+..+.+|||||++.|..... .++..+|++++|+|+++.. ++ .. ..+.+. ++..
T Consensus 240 GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~------~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~ 312 (592)
T 3mca_A 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMI------AGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA 312 (592)
T ss_dssp -------------------CCEEESSSEEEEECC------C-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH
T ss_pred CeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHH------HHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH
Confidence 2222222233334456789999999998866554 6778899999999998743 22 11 111222 2222
Q ss_pred cCCCCCc-EEEEEecCCCCCC--CCH----HHHHHHh-hhcccccCcccCCCCCCCCCceeEEEeeeccccchH------
Q psy871 173 ESLASCP-VLILGNKIDKHGA--ASE----EEIRQYF-GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG------ 238 (249)
Q Consensus 173 ~~~~~~p-~ivv~nK~Dl~~~--~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~------ 238 (249)
.++| +++|+||+|+.+. ... +++..++ +..+ .....++++++||++|.|++
T Consensus 313 ---lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~ 377 (592)
T 3mca_A 313 ---LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSD 377 (592)
T ss_dssp ---SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCG
T ss_pred ---cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccc
Confidence 4666 9999999999752 111 2222322 2222 22234789999999999998
Q ss_pred --------HHHHHHhhh
Q psy871 239 --------DGFRWLANY 247 (249)
Q Consensus 239 --------~l~~~l~~~ 247 (249)
.|++.|.+.
T Consensus 378 ~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 378 LYKWYKGPTLLSALDQL 394 (592)
T ss_dssp GGGTCCSCCHHHHHHTS
T ss_pred cccccchHHHHHHHHhh
Confidence 788877654
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=7.4e-19 Score=146.77 Aligned_cols=186 Identities=18% Similarity=0.149 Sum_probs=100.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++.++|+++|++++|||||+++|++........... .+.. ........+... .....+..+.... ..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~----~i~~--~s~~~gt~~~~~-~~~~~~d~~~~E~------~r 88 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLE----AITR--DSKKSGTTGDDV-DLALLVDGLQAER------EQ 88 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------------CCC---CHHHHHHHHC----------
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhh----hhhh--hhhccCccccch-hhhhhhccChhHH------HC
Confidence 456899999999999999999998754221111100 0000 000000001110 1111122221110 01
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+.+.......+......+.+|||||++.|..... .++..+|++++|+|+++....+. .+++... .. .+.
T Consensus 89 GiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~-~~---~~~ 157 (434)
T 1zun_B 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMA------TGASTCDLAIILVDARYGVQTQT-RRHSYIA-SL---LGI 157 (434)
T ss_dssp -CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHH------HHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTC
T ss_pred CcEEEeeeeEeecCCceEEEEECCChHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cCC
Confidence 1111122223344456799999999998876655 56789999999999998643332 2233222 22 344
Q ss_pred -cEEEEEecCCCCCCCC--H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 179 -PVLILGNKIDKHGAAS--E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 179 -p~ivv~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
|+++|+||+|+.+... . +++.++++... ......+++++||++|.|++++
T Consensus 158 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g------------~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 158 KHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA------------FKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp CEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT------------CCCSEEEEEECCTTTCTTTSSC
T ss_pred CeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC------------CCccCceEEEEeccCCCCcccc
Confidence 6999999999976311 1 22222222221 1123478999999999999873
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=9e-20 Score=136.07 Aligned_cols=133 Identities=23% Similarity=0.320 Sum_probs=90.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+.++|+++|++|||||||+++|++..+....++..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------------------------------------- 85 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------------------------------------- 85 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----------------------------------------
Confidence 5678999999999999999999988654321111000000
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC-ChhhhHhhHHHHHHHHhcc---C
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS-DRERFEESKSELQCLLTDE---S 174 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~ 174 (249)
... ....+.+||+||++.+...... .+...+..+|++++|+|++ +..++.....++..++... .
T Consensus 86 ---~~~-------~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
T 2ged_A 86 ---ADY-------DGSGVTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 153 (193)
T ss_dssp ----CC-------CCTTCSEEEETTCCBSSCCHHH--HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---eee-------cCCeEEEEECCCCchHHHHHHH--HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhcc
Confidence 000 2235788999999877655441 1112334589999999999 8888888877777776532 2
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHhh
Q psy871 175 LASCPVLILGNKIDKHGAASEEEIRQYFG 203 (249)
Q Consensus 175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 203 (249)
..+.|+++|+||+|+.+....+++.+.+.
T Consensus 154 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 154 ENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred ccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 25799999999999988766666665554
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.81 E-value=1.7e-20 Score=156.64 Aligned_cols=113 Identities=12% Similarity=0.228 Sum_probs=73.2
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH---HHHHHHhccCCCCC-cEEEEE
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS---ELQCLLTDESLASC-PVLILG 184 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-p~ivv~ 184 (249)
+...+..+.+|||||+++|..... .++..+|++++|+|+++ .+|..... ...+.+......+. |+++++
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~------~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMI------TGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHH------HTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EecCCeEEEEEECCCcHHHHHHHH------hhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 344566799999999999876655 67789999999999998 44542211 11121111111344 689999
Q ss_pred ecCCCCCCC-C-------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 185 NKIDKHGAA-S-------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 185 nK~Dl~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
||+|+.+.. . .+++.++++... .....++++++||++|.|+.++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTBC
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecccCcccccc
Confidence 999998631 1 233444444332 1112478999999999999743
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=2.2e-19 Score=146.40 Aligned_cols=113 Identities=9% Similarity=-0.021 Sum_probs=74.5
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE-EEEEe-cCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV-LILGN-KIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~ 190 (249)
+..+.+|||||+++|..... ..+..+|++++|+| ++. ......+++... .. .++|. ++++| |+|+
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~------~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~-~~---~~i~~~ivvvNNK~Dl- 125 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLI------TALNISDIAVLCIP-PQG-LDAHTGECIIAL-DL---LGFKHGIIALTRSDST- 125 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHH------HHHHTCSEEEEEEC-TTC-CCHHHHHHHHHH-HH---TTCCEEEEEECCGGGS-
T ss_pred CeEEEEEECCChHHHHHHHH------HHHHHCCEEEEEEc-CCC-CcHHHHHHHHHH-HH---cCCCeEEEEEEeccCC-
Confidence 45699999999998865554 56688999999999 542 233333333332 22 56787 99999 9999
Q ss_pred CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEE--eeecc---ccchHHHHHHHhhhc
Q psy871 191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFM--CSVLM---RQGYGDGFRWLANYI 248 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---g~gv~~l~~~l~~~i 248 (249)
+....++..+.++.+.. ......+++++ +||++ |.|++++++.|.+.+
T Consensus 126 ~~~~~~~~~~~i~~~l~----------~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 126 HMHAIDELKAKLKVITS----------GTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CHHHHHHHHHHHHHHTT----------TSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH----------hcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 53212222222222210 01123479999 99999 999999999988764
No 160
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=4.5e-20 Score=155.19 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=64.6
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hhH---hhHHHHHHHHhccCCCCCc-EEEEE
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RFE---ESKSELQCLLTDESLASCP-VLILG 184 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ivv~ 184 (249)
.+..+.+|||||++.|..... .++..+|++++|+|+++.. +|. ...+.+... .. .++| +++++
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivvi 188 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMI------NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVI 188 (467)
T ss_dssp SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEE
T ss_pred CCeEEEEEECCCcHHHHHHHH------hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEE
Confidence 456799999999998876655 6778999999999999852 332 122222222 22 5677 99999
Q ss_pred ecCCCCCCC-CH-------HHHHHHhhhc-ccccCcccCCCCCCC-CCceeEEEeeeccccchHHHH
Q psy871 185 NKIDKHGAA-SE-------EEIRQYFGLY-GLTTGKVATPRSEMS-GRPIELFMCSVLMRQGYGDGF 241 (249)
Q Consensus 185 nK~Dl~~~~-~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~ 241 (249)
||+|+.... .. +++.++++.. . +. ...++++++||++|.|+++++
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g------------~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAG------------YNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcC------------CCccCCceEEeccccccccccccc
Confidence 999996521 22 2344444433 2 10 114789999999999998754
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=2.2e-18 Score=133.46 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=95.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.++++|+|+|.+|||||||+|+|++..+.... ++.+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T----------------------------------------- 57 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVT----------------------------------------- 57 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------C-----------------------------------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCcc-----------------------------------------
Confidence 56789999999999999999999987654211 110100
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhH------HHHhhhhccccccceEEEEEECCChhhh-HhhHHHHHHHH
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK------SELQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLL 170 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~------~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~ 170 (249)
...........+..+.+|||||........ .....+......+|++++|+|+++.... ..+..++.+..
T Consensus 58 ----~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~ 133 (247)
T 3lxw_A 58 ----RACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF 133 (247)
T ss_dssp ----CSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHH
T ss_pred ----ccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 000001112234578999999964322111 1122223444899999999999863221 11222333332
Q ss_pred hccCCCCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-----cccch
Q psy871 171 TDESLASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-----MRQGY 237 (249)
Q Consensus 171 ~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-----~g~gv 237 (249)
. ....+.|++++.||+|+...... +++....+.++ ..++.+++. .+.|+
T Consensus 134 ~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g-----------------~~~~~~~~~~~~~~~~~~v 195 (247)
T 3lxw_A 134 G-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG-----------------GRVCAFDNRATGREQEAQV 195 (247)
T ss_dssp C-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT-----------------TCEEECCTTCCHHHHHHHH
T ss_pred C-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC-----------------CeEEEEeCCCCccccHHHH
Confidence 1 11236899999999999764222 22344444433 334444433 36899
Q ss_pred HHHHHHHhhhc
Q psy871 238 GDGFRWLANYI 248 (249)
Q Consensus 238 ~~l~~~l~~~i 248 (249)
++|++.+.+.+
T Consensus 196 ~~Ll~~i~~~~ 206 (247)
T 3lxw_A 196 EQLLGMVEGLV 206 (247)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 162
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.78 E-value=8.4e-19 Score=157.49 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=80.8
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecC
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKI 187 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 187 (249)
++.....+.+|||||+++|..... .++..+|++++|+|+++....+. .+++..+ .. .++| +++++||+
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi------~gas~AD~aILVVDAtdGv~~QT-rEhL~ll-~~---lgIP~IIVVINKi 422 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVAATDGPMPQT-REHILLG-RQ---VGVPYIIVFLNKC 422 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHH------HTSCCCSEEEEEEETTTCSCTTH-HHHHHHH-HH---HTCSCEEEEEECC
T ss_pred EcCCCEEEEEEECCChHHHHHHHH------HHHhhCCEEEEEEcCCccCcHHH-HHHHHHH-HH---cCCCeEEEEEeec
Confidence 334456799999999998865554 67889999999999998644333 2233333 22 4688 78999999
Q ss_pred CCCCCCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc--------cchHHHHHHHhhhc
Q psy871 188 DKHGAAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR--------QGYGDGFRWLANYI 248 (249)
Q Consensus 188 Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--------~gv~~l~~~l~~~i 248 (249)
|+.+... .+++.++++... .....++++++||++| .|++++++.|.+.+
T Consensus 423 DLv~d~e~le~i~eEi~elLk~~G------------~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 423 DMVDDEELLELVEMEVRELLSQYD------------FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTT------------SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccchhhHHHHHHHHHHHHHhcc------------ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 9985311 123444444332 1123478999999999 57999999988754
No 163
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=133.52 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=92.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~ 97 (249)
.+.++|+|+|++|||||||+|+|++..+... .++.+.....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~-------------------------------------- 68 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKC-------------------------------------- 68 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSC--------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeE--------------------------------------
Confidence 5678999999999999999999998665321 1110100000
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhh-----hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-----SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 172 (249)
........+..+.+|||||...... .......+...+..+|++++|+|+++..... ..++..+...
T Consensus 69 -------~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~ 139 (239)
T 3lxx_A 69 -------EKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKM 139 (239)
T ss_dssp -------EEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHH
T ss_pred -------EEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHH
Confidence 0011112245689999999653221 1122233335567789999999997643321 1123333211
Q ss_pred cC-CCCCcEEEEEecCCCCCCCCHH--------HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-----cccchH
Q psy871 173 ES-LASCPVLILGNKIDKHGAASEE--------EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-----MRQGYG 238 (249)
Q Consensus 173 ~~-~~~~p~ivv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-----~g~gv~ 238 (249)
.. ....|+++|+||+|+......+ .+...++.+. ..++.+++. +..++.
T Consensus 140 ~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~v~ 202 (239)
T 3lxx_A 140 FGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG-----------------DRYCALNNKATGAEQEAQRA 202 (239)
T ss_dssp HHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS-----------------SSEEECCTTCCHHHHHHHHH
T ss_pred hhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC-----------------CEEEEEECCCCccccHHHHH
Confidence 10 0246999999999997643222 3455555544 345556554 347899
Q ss_pred HHHHHHhhhc
Q psy871 239 DGFRWLANYI 248 (249)
Q Consensus 239 ~l~~~l~~~i 248 (249)
++++.+.+.+
T Consensus 203 ~ll~~i~~~~ 212 (239)
T 3lxx_A 203 QLLGLIQRVV 212 (239)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=6e-19 Score=148.02 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=72.3
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hhH---hhHHHHHHHHhccCCCCCc-EE
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RFE---ESKSELQCLLTDESLASCP-VL 181 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~i 181 (249)
+...+..+.+|||||++.|..... .++..+|++++|+|+++.. +|. ...+.+.. +.. .++| ++
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~------~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~ii 149 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMI------TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLI 149 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHH------HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEE
T ss_pred EecCCceEEEEECCCcHHHHHHHH------hhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEE
Confidence 344567899999999998876655 7788999999999999853 332 22222222 222 4566 99
Q ss_pred EEEecCCCCCC--CC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 182 ILGNKIDKHGA--AS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 182 vv~nK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
+++||+|+.+. .. .+++.++++... .....++++++||++|.|++++
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHHHHHcC------------CCccCceEEEeecccCcCcccc
Confidence 99999999841 11 123333333332 1112378999999999998743
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.78 E-value=6.2e-19 Score=138.71 Aligned_cols=169 Identities=14% Similarity=0.106 Sum_probs=82.5
Q ss_pred cceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH 99 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~ 99 (249)
.++|+|+|.+|+|||||+|+|++....... |... ... .++..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~---~~~----------------------------------~~t~~ 50 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS---HRI----------------------------------KKTVQ 50 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------------------------------------------CC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcc---ccc----------------------------------CCceE
Confidence 579999999999999999999765433110 0000 000 00111
Q ss_pred cceeceeccccccceEEEEEeCCCchh-------hhhhHHHH----hhhhc----------cccccceEEEEEECCChhh
Q psy871 100 PTRRVWKDYFPAVDAIVFLVDTSDRER-------FEESKSEL----QCLLT----------DESLASSIVFLVDTSDRER 158 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~-------~~~~~~~~----~~~~~----------~~~~~d~ii~v~d~~~~~~ 158 (249)
...........+....+.+|||||... +..+...+ ..++. ...++|+++++++.+....
T Consensus 51 ~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~ 130 (274)
T 3t5d_A 51 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL 130 (274)
T ss_dssp CEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC
T ss_pred EEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC
Confidence 111111111122334799999999732 22222100 11111 1134789999997765322
Q ss_pred hHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH----HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871 159 FEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE----IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR 234 (249)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 234 (249)
...-...+..+ . .++|+++|+||+|+........ +.+.+... .++++++||+++
T Consensus 131 ~~~d~~~l~~l-~----~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~-----------------~i~v~~~sa~~~ 188 (274)
T 3t5d_A 131 KPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH-----------------KIKIYEFPETDD 188 (274)
T ss_dssp CHHHHHHHHHH-T----TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT-----------------TCCCCCC-----
T ss_pred CHHHHHHHHHH-h----ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc-----------------CCeEEcCCCCCC
Confidence 11112233333 2 2799999999999975322222 22222222 277999999999
Q ss_pred cchHHHHHHHhhhc
Q psy871 235 QGYGDGFRWLANYI 248 (249)
Q Consensus 235 ~gv~~l~~~l~~~i 248 (249)
+|+++++++|.+.+
T Consensus 189 ~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 189 EEENKLVKKIKDRL 202 (274)
T ss_dssp ------CHHHHHTC
T ss_pred hhHHHHHHHHhcCC
Confidence 99999999998754
No 166
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.78 E-value=1.9e-18 Score=138.73 Aligned_cols=230 Identities=11% Similarity=0.079 Sum_probs=112.0
Q ss_pred hHhHHHHhhhcccccc-eecceEEEeccCCcchHHHHHHHhcCCCCCCCC---CCCccc-ceeeee------eeeceEEE
Q psy871 3 QIWDWFTGVLGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP---TLHPIL-GYLGLW------TKSGKLLF 71 (249)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~---t~~~~~-~~~~~~------~~~~~~~~ 71 (249)
.+.+++.+.+..+|.. .+.++|+|+|++|||||||+|+|++..+..... |..+.. .....+ ....-..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 84 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEF 84 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhh
Confidence 3667788888888876 677899999999999999999999887631111 111100 000000 00000011
Q ss_pred EcCCCC---chhHHHHHHhcC--CcccccCCcccceeceeccccccceEEEEEeCCCchhhh------hhH-HHHhhhhc
Q psy871 72 LGLDNA---GKTTLLHMLKDD--RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE------ESK-SELQCLLT 139 (249)
Q Consensus 72 ~g~~~~---Gkssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~------~~~-~~~~~~~~ 139 (249)
...+.. ....+...+... .......+........ ..+......+.+|||||..... ... ........
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
T 1jwy_B 85 LHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINL-KIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMA 163 (315)
T ss_dssp SSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEE-EEEETTSCSEEEEECCCCC---------CSHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEE-EEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHH
Confidence 111100 001111111000 0000000000000000 0111223469999999975411 111 12233446
Q ss_pred cccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCC
Q psy871 140 DESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM 219 (249)
Q Consensus 140 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
++..+|++++|+|+++..........+...+. ..+.|+++|+||+|+..... +..+.++... ...
T Consensus 164 ~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~----------~~~ 228 (315)
T 1jwy_B 164 YIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGT--DAMEVLTGRV----------IPL 228 (315)
T ss_dssp HHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSC--CCHHHHTTSS----------SCC
T ss_pred HHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcch--HHHHHHhCCC----------ccC
Confidence 77889999999998543211111112233332 25799999999999976432 1122222110 001
Q ss_pred CCCceeEEEeeecc---ccchHHHHHHHhhhc
Q psy871 220 SGRPIELFMCSVLM---RQGYGDGFRWLANYI 248 (249)
Q Consensus 220 ~~~~~~~~~~Sa~~---g~gv~~l~~~l~~~i 248 (249)
.....++..+||.+ +.|++++++.+.+.+
T Consensus 229 ~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 229 TLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 12235566667777 789999998876654
No 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=1.2e-17 Score=146.38 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=111.9
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCCCCCC--CCCCCcccceeeeeeeeceEEEEcCCCCc-----hhHH--------
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAG-----KTTL-------- 82 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~g~~~~G-----kssl-------- 82 (249)
..+.++|+|+|++|+|||||+|+|++..+... .|+..... .+... ..........++.. -..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~-~i~~g-~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~ 143 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLT-VLRYG-PEKKVTIHFNDGKSPQQLDFQNFKYKYTIDP 143 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCE-EEEEC-SSCEEEEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceE-EEEeC-CCCeEEEEEcCCCcccccChhhhhhhhcCCH
Confidence 45788999999999999999999998875432 22221111 11110 11122221111110 0000
Q ss_pred --HHHHhcCCcccccCCcccceeceecccccc--ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh
Q psy871 83 --LHMLKDDRLAQPVPTLHPTRRVWKDYFPAV--DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER 158 (249)
Q Consensus 83 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~ 158 (249)
...+.... ............+++.. ...+.+|||||......... ....++..+|++++|+|++++.+
T Consensus 144 ~~~~~l~~~~-----~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~---~~~~~i~~aD~vL~Vvda~~~~s 215 (695)
T 2j69_A 144 AEAKKLEQEK-----KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNE---LSLGYVNNCHAILFVMRASQPCT 215 (695)
T ss_dssp HHHHHHHTSS-----CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHH---HHTHHHHSSSEEEEEEETTSTTC
T ss_pred HHHHHHhhcc-----ccccccceEEEEEccchhccCCeEEEECCCCCchhhHHH---HHHHHHHhCCEEEEEEeCCCccc
Confidence 11111100 00011111111112211 13489999999776443222 23356678999999999998876
Q ss_pred hHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC-----CHHH-------HHHHhh-hcccccCcccCCCCCCCCCcee
Q psy871 159 FEESKSELQCLLTDESLASCPVLILGNKIDKHGAA-----SEEE-------IRQYFG-LYGLTTGKVATPRSEMSGRPIE 225 (249)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 225 (249)
..+... +...+.. .+.|+++|+||+|+.... ..++ +.+... ...... ..........+
T Consensus 216 ~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~-----~~~g~~~~~~~ 286 (695)
T 2j69_A 216 LGERRY-LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC-----TVEGQNIYDER 286 (695)
T ss_dssp HHHHHH-HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG-----BSSSCBCGGGT
T ss_pred hhHHHH-HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh-----cccccccCCCc
Confidence 665432 3323222 478999999999986431 1111 211111 010000 00001112357
Q ss_pred EEEeeec--------------cccchHHHHHHHhhhc
Q psy871 226 LFMCSVL--------------MRQGYGDGFRWLANYI 248 (249)
Q Consensus 226 ~~~~Sa~--------------~g~gv~~l~~~l~~~i 248 (249)
+++|||+ ++.|+++++..|.+.+
T Consensus 287 v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 287 VFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp EEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred EEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999 9999999999988754
No 168
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=2.3e-18 Score=141.81 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=100.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
..|+|+|++|||||||+++|++.... ...+|..+..+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V-------------------------------------- 199 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-------------------------------------- 199 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE--------------------------------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEE--------------------------------------
Confidence 46899999999999999999875321 1111222111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~ 176 (249)
.+. ....+.++|+||...... .......++..+.+++.+++++|++ ...+..+..+..++.... ...
T Consensus 200 ---------~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~ 268 (416)
T 1udx_A 200 ---------EVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALL 268 (416)
T ss_dssp ---------ECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHH
T ss_pred ---------Eec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhh
Confidence 001 124578999999753211 1111223455667899999999998 445555544444443221 123
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..|.++++||+|+... +.+..+.+... ....+++++||++++|+++++++|.+.+
T Consensus 269 ~~P~ILVlNKlDl~~~---~~~~~l~~~l~--------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 269 RRPSLVALNKVDLLEE---EAVKALADALA--------------REGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp HSCEEEEEECCTTSCH---HHHHHHHHHHH--------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEEECCChhhH---HHHHHHHHHHH--------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 6899999999999764 22333222221 0126899999999999999999998765
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=6.7e-18 Score=127.59 Aligned_cols=161 Identities=20% Similarity=0.194 Sum_probs=94.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+..+|+++|++|||||||+++|++..+. ...|+.+....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~---------------------------------------- 64 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL---------------------------------------- 64 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CC----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee----------------------------------------
Confidence 4568999999999999999999876521 11222211100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhh-------hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE-------ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-------~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
.... .+. + .+.+||+||..... ........++.....++.+++++|+++..+.... .+..++.
T Consensus 65 ---~~~~--~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~ 134 (210)
T 1pui_A 65 ---INLF--EVA--D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV 134 (210)
T ss_dssp ---EEEE--EEE--T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH
T ss_pred ---eEEE--Eec--C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH
Confidence 0000 001 1 36789999974321 1111122233334678999999999886544321 2233333
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 172 DESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
. .++|++++.||+|+.+...+ ..+...+.... ..+.++++||+++.|+++++++|.+.
T Consensus 135 ~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 135 D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN---------------GDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC---------------SCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC---------------CCCceEEEeecCCCCHHHHHHHHHHH
Confidence 2 57899999999998763211 22233332221 23688999999999999999999875
Q ss_pred c
Q psy871 248 I 248 (249)
Q Consensus 248 i 248 (249)
+
T Consensus 197 ~ 197 (210)
T 1pui_A 197 F 197 (210)
T ss_dssp H
T ss_pred H
Confidence 4
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=2.2e-17 Score=140.33 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=53.3
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+..+.+|||||+..|..... .++..+|++++|+|+++....+. . .+.... ...++|+++++||+|+.
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~------~~l~~aD~~IlVvDa~~g~~~~t-~-~~~~~~---~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTY------RTLTAVDCCLMVIDAAKGVEDRT-R-KLMEVT---RLRDTPILTFMNKLDRD 147 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHH------HGGGGCSEEEEEEETTTCSCHHH-H-HHHHHH---TTTTCCEEEEEECTTSC
T ss_pred ECCeEEEEEECCCChhHHHHHH------HHHHHCCEEEEEEeCCccchHHH-H-HHHHHH---HHcCCCEEEEEcCcCCc
Confidence 3467899999999988876555 66789999999999998543222 1 222222 23689999999999998
Q ss_pred CCCC
Q psy871 191 GAAS 194 (249)
Q Consensus 191 ~~~~ 194 (249)
....
T Consensus 148 ~~~~ 151 (529)
T 2h5e_A 148 IRDP 151 (529)
T ss_dssp CSCH
T ss_pred cccH
Confidence 7533
No 171
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=2.7e-18 Score=143.53 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=95.6
Q ss_pred ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh-hH-HHHhhhhcccccc
Q psy871 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SK-SELQCLLTDESLA 144 (249)
Q Consensus 67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~-~~~~~~~~~~~~~ 144 (249)
.++.++|.+++|||++++++.+..+....+.++.+++.........+..+.+|||+|++.... .. .........+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 478999999999999999999877654444445554444333444456799999999862111 11 1112233667889
Q ss_pred ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce
Q psy871 145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI 224 (249)
Q Consensus 145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (249)
|++++|+|+.+..++.+. ++.++++. .++|+++|+||+|+.... .+..++. .. ...
T Consensus 84 d~il~vvD~~~~~~~~d~--~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~-~l----------------g~~ 139 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE--EVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY-SL----------------GFG 139 (436)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHTT---CCSCEEEEEECCCC-------CCCSSG-GG----------------SSC
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCccch--hhHHHHH-Hc----------------CCC
Confidence 999999999987665442 55555543 689999999999986531 1111111 01 112
Q ss_pred eEEEeeeccccchHHHHHHHhhhc
Q psy871 225 ELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 225 ~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+++++||++|.|++++++++.+.+
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhc
Confidence 689999999999999999998765
No 172
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.3e-18 Score=142.92 Aligned_cols=109 Identities=19% Similarity=0.175 Sum_probs=51.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++|+++|.||||||||+|+|++.... .+.+|+.+..+...+ .....+.. +. . ...|..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~-------~~~~~~~~--------l~--~--~~~p~~ 61 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYA-------ITDHPCKE--------LG--C--SPNPQN 61 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEE-------EEECSCSS--------SC--C--SCCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEee-------ccCCchHH--------hh--h--hccccc
Confidence 48999999999999999999987632 233455544443210 00000000 00 0 000000
Q ss_pred ccceeceecccc-ccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCCh
Q psy871 99 HPTRRVWKDYFP-AVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDR 156 (249)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~ 156 (249)
. ..+. .....+.+|||||.....+ .......++.+++.+|++++|+|+++.
T Consensus 62 ~-------~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 62 Y-------EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp S-------CEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred c-------cccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 0 0011 1124589999999865322 222345667888999999999999875
No 173
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=3.6e-17 Score=133.09 Aligned_cols=221 Identities=11% Similarity=0.040 Sum_probs=107.3
Q ss_pred HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCC-Ccccceeeeeee-eceEEEEcCCC---
Q psy871 4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-HPILGYLGLWTK-SGKLLFLGLDN--- 76 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~~~~g~~~--- 76 (249)
+.+.+-+.+..+|.. .+.++|+|+|.+|||||||+|+|++..+......+ ......+.+... .....+...++
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 455666667677664 46789999999999999999999988764211111 111111111000 00111111111
Q ss_pred CchhHHHH-------HHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhh------hhhHHHHhhh-hcccc
Q psy871 77 AGKTTLLH-------MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF------EESKSELQCL-LTDES 142 (249)
Q Consensus 77 ~Gkssl~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~------~~~~~~~~~~-~~~~~ 142 (249)
.....+.. ++.+.. .+........ .........+.+|||||.... ....+..... ..++.
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~-----~gi~~~~~~~-~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTN-----KGISPVPINL-RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT 165 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTT-----TCCCCCCEEE-EEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcccC-----CCcccCceEE-EEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc
Confidence 11111110 111000 0110000000 011111346999999996431 1111111111 13333
Q ss_pred c-cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871 143 L-ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221 (249)
Q Consensus 143 ~-~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
. .+++++|+|++....-......+..+ ...+.|+++|+||+|+.+.... ....++.... ....
T Consensus 166 ~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~----------~l~~ 229 (353)
T 2x2e_A 166 KENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVITKLDLMDEGTD--ARDVLENKLL----------PLRR 229 (353)
T ss_dssp STTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSS----------CCTT
T ss_pred CCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEeccccccCcchh--HHHHHhCCcc----------cccC
Confidence 4 45556677776532222221122222 2367999999999999764221 1122221100 0111
Q ss_pred CceeEEEeeeccccchHHHHHHHhh
Q psy871 222 RPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 222 ~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
...+++++||++|.|++++++.+.+
T Consensus 230 ~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 230 GYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CceEEEeCCcccccccccHHHHHHH
Confidence 2357899999999999999988865
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=8.2e-17 Score=141.15 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+.+|||||+..|..... .++..+|++++|+|+++...++... .+.... . .++|+++++||+|+...
T Consensus 76 ~~~i~liDTPG~~df~~~~~------~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~-~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVE------RSMRVLDGAIVVFDSSQGVEPQSET-VWRQAE-K---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHH------HHHHHCSEEEEEEETTTCSCHHHHH-HHHHHH-H---TTCCEEEEEECTTSTTC
T ss_pred CeEEEEEECcCccchHHHHH------HHHHHCCEEEEEEECCCCcchhhHH-HHHHHH-H---cCCCEEEEEECCCcccC
Confidence 56799999999988876665 6678899999999999977666543 233332 2 58999999999999865
No 175
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.73 E-value=3.5e-17 Score=130.46 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=95.7
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC----------ChhhhHhhHHHHHHHHhccCCCCC
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS----------DRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+...+..+.+||++|++++...+. .++..++++++|+|++ +..++.+...++..+.......++
T Consensus 162 ~~~~~v~l~iwDtgGQe~~R~~w~------~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 162 FDLQSVIFRMVDVGGQRSERRKWI------HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEETTEEEEEEEECCSHHHHTTGG------GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEeeceeeEEEEcCCchhHHHHHH------HHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 334456789999999999998888 8889999999999655 567777777788888776666789
Q ss_pred cEEEEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871 179 PVLILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240 (249)
Q Consensus 179 p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 240 (249)
|+++++||+|+.. ..+.++..+++........ ......+.++++||+++.|++++
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~-------~~~~~~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN-------PDSDKIIYSHFTCATDTENIRFV 308 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC-------TTTTSCEEEEECCTTCHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc-------ccccCCcEEEEEEeecCHHHHHH
Confidence 9999999999854 2455666665443211100 01124578999999999999999
Q ss_pred HHHHhhhc
Q psy871 241 FRWLANYI 248 (249)
Q Consensus 241 ~~~l~~~i 248 (249)
|..+.+.|
T Consensus 309 F~~v~~~I 316 (327)
T 3ohm_A 309 FAAVKDTI 316 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 176
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.73 E-value=7e-18 Score=137.31 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=70.3
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.++||||...... .....+|++++|+|+...+..+.+.. .....|+++|+||+|+..
T Consensus 170 ~~~~~iiiDTpGi~~~~~---------~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEV---------AVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEH 231 (355)
T ss_dssp TTCCEEEEEECSCSSHHH---------HHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGG
T ss_pred CCCCEEEEeCCCCCcHHH---------HHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcC
Confidence 456799999999542111 12378999999999887655443321 113469999999999865
Q ss_pred CCCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....+ ++.+.+..... ....+..+++++||++|.|+++++++|.+.+
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 232 HKEARLAARELSAAIRLIYP----------REALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHST----------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccc----------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 31222 22222222210 0011236899999999999999999998764
No 177
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.72 E-value=2e-17 Score=133.68 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=89.2
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC----------ChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS----------DRERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
....+.+|||+|++++...+. .++..++++++|+|++ +..++.....++..+.......+.|++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~------~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii 254 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWI------HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 254 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTG------GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred cceeeEEEECCCchhhhHHHH------HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE
Confidence 346789999999999998888 8889999999999998 678888888888888765445789999
Q ss_pred EEEecCCCCCC----C-------------------CHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871 182 ILGNKIDKHGA----A-------------------SEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237 (249)
Q Consensus 182 vv~nK~Dl~~~----~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 237 (249)
+++||+|+..+ . ..++..+++.. +.... .... ........+.+++|||+++.|+
T Consensus 255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~-~~~~-~~~~~~~~~~~~eTSA~d~~nV 332 (354)
T 2xtz_A 255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELY-YQNT-APDRVDRVFKIYRTTALDQKLV 332 (354)
T ss_dssp EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHH-HHTC-CTTTTTSCEEEEECCTTCHHHH
T ss_pred EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhh-hccc-cccccCcceEEEEEEeecchhH
Confidence 99999998431 1 12334443221 10000 0000 0000012356799999999999
Q ss_pred HHHHHHHhhhc
Q psy871 238 GDGFRWLANYI 248 (249)
Q Consensus 238 ~~l~~~l~~~i 248 (249)
+++|.++.+.|
T Consensus 333 ~~vF~~v~~~I 343 (354)
T 2xtz_A 333 KKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.71 E-value=3.9e-17 Score=133.33 Aligned_cols=222 Identities=9% Similarity=0.014 Sum_probs=109.2
Q ss_pred HhHHHHhhhcccccc----------eecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeee--e-ceE
Q psy871 4 IWDWFTGVLGYLGLW----------TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTK--S-GKL 69 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~----------~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~--~-~~~ 69 (249)
+.+.+.+.+..+|-. ..-++|+|+|++|||||||+|+|++..+..... +.......+.+... . ...
T Consensus 7 ~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~ 86 (360)
T 3t34_A 7 LVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREY 86 (360)
T ss_dssp HHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCE
T ss_pred HHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccce
Confidence 455566666666532 355699999999999999999999987642221 11111111111000 0 011
Q ss_pred -EEEcCCC---CchhHHHHHHhcCCcccccCCcccceecee-ccccccceEEEEEeCCCchhhhh------h-HHHHhhh
Q psy871 70 -LFLGLDN---AGKTTLLHMLKDDRLAQPVPTLHPTRRVWK-DYFPAVDAIVFLVDTSDRERFEE------S-KSELQCL 137 (249)
Q Consensus 70 -~~~g~~~---~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~D~~g~~~~~~------~-~~~~~~~ 137 (249)
.+...+. ..-..+...+..........+......... .........+.+|||||...+.. . .......
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~ 166 (360)
T 3t34_A 87 AEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV 166 (360)
T ss_dssp EEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH
T ss_pred eeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH
Confidence 1111110 011111111110000000000000001100 11111233589999999776511 1 1112233
Q ss_pred hccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCC
Q psy871 138 LTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRS 217 (249)
Q Consensus 138 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
..++..+|++++|+|.++.+.... ....++......+.|+++|+||+|+.+.... ..+.++...
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~----------- 230 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRS----------- 230 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSS-----------
T ss_pred HHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCcc-----------
Confidence 366788999999998866443322 1222333333367899999999999763211 112222111
Q ss_pred CCCCCceeEEEeeeccccchHHHHHH
Q psy871 218 EMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
.....+|+++|++++.++++.+..
T Consensus 231 --~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 231 --FKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp --SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred --ccccCCeEEEEECChHHhccCCCH
Confidence 112367999999999888765443
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=8.6e-18 Score=136.83 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=48.8
Q ss_pred eEEEEEeCCCc-------hhhhhhHHHHh----hhhccc----------cccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871 114 AIVFLVDTSDR-------ERFEESKSELQ----CLLTDE----------SLASSIVFLVDTSDRERFEESKSELQCLLTD 172 (249)
Q Consensus 114 ~~~~v~D~~g~-------~~~~~~~~~~~----~~~~~~----------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 172 (249)
..+.+|||||+ +.+..+...+. .++... .++|+++++++.+ ..++......+...+
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-- 171 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-- 171 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT--
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh--
Confidence 46899999998 44544443111 122111 1234566666652 233444332222222
Q ss_pred cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
..++|+++|+||+|+................. ....++++++||++|.| ++.+.++.+.
T Consensus 172 --~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-------------~~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 172 --HNKVNIVPVIAKADTLTLKERERLKKRILDEI-------------EEHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp --CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-------------TCC-CCSCCCC----------CHHHHHH
T ss_pred --ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-------------HHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 25799999999999976321111111222111 11237899999999998 7666665554
No 180
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.70 E-value=1e-16 Score=128.15 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=95.0
Q ss_pred ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC----------ChhhhHhhHHHHHHHHhccCCCCC
Q psy871 109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS----------DRERFEESKSELQCLLTDESLASC 178 (249)
Q Consensus 109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 178 (249)
+...+..+.+||++|++++...+. .++..++++++|+|++ +..++.+...++..+.......++
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~------~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWV------SFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHH------TTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEeeeeeeccccCCCcccccccHH------HHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 334456789999999999998888 8889999999999998 677888888888888877666789
Q ss_pred cEEEEEecCCCCCC-----------------CCHHHHHHHhhhcc------cccCcccC----CCCCCCCCceeEEEeee
Q psy871 179 PVLILGNKIDKHGA-----------------ASEEEIRQYFGLYG------LTTGKVAT----PRSEMSGRPIELFMCSV 231 (249)
Q Consensus 179 p~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~Sa 231 (249)
|+++++||+|+..+ ...+++.+++.... ........ .......+.+.++++||
T Consensus 230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA 309 (340)
T 4fid_A 230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA 309 (340)
T ss_dssp EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence 99999999998531 23444444443211 00000000 00000114588999999
Q ss_pred ccccchHHHHHHHhhhc
Q psy871 232 LMRQGYGDGFRWLANYI 248 (249)
Q Consensus 232 ~~g~gv~~l~~~l~~~i 248 (249)
+++.|++.+|..+.+.|
T Consensus 310 ~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 310 TDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHHH
Confidence 99999999999888754
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=1.7e-16 Score=139.13 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=53.6
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+.+|||||+..|..... ..+..+|++++|+|+++....+... .+..+. . .++|+++|+||+|+...
T Consensus 74 ~~~i~liDTPG~~df~~~~~------~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~-~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVE------RSLRVLDGAVTVLDAQSGVEPQTET-VWRQAT-T---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHH------HHHHHCSEEEEEEETTTBSCHHHHH-HHHHHH-H---TTCCEEEEEECTTSTTC
T ss_pred CeeEEEEECcCCcchHHHHH------HHHHHCCEEEEEECCCCCCcHHHHH-HHHHHH-H---cCCCEEEEEECCCcccc
Confidence 56799999999988766555 6677899999999999876665543 333332 2 58999999999999875
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=2.8e-16 Score=137.33 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
....+.+|||||+..|..... .++..+|++++|+|+++....+.. .++.... . .++|+++++||+|+.
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~------~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~-~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIR------GALEAADAALVAVSAEAGVQVGTE-RAWTVAE-R---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHH------HHHHHCSEEEEEEETTTCSCHHHH-HHHHHHH-H---TTCCEEEEEECGGGC
T ss_pred CCEEEEEEeCCCccchHHHHH------HHHhhcCcEEEEEcCCcccchhHH-HHHHHHH-H---ccCCEEEEecCCchh
Confidence 356789999999998876555 667789999999998875443322 2333332 2 579999999999998
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=134.68 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=62.2
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.++||+|..... . .....+|++++|+|+++....+.+. ..+ ...|.++|+||+|+.+
T Consensus 165 ~~~~~iliDT~Gi~~~~---~------~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---F------AVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDL 226 (349)
T ss_dssp TTCSEEEEECCCC--CH---H------HHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGG
T ss_pred CCCCEEEEECCCcchhh---h------hHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCC
Confidence 34568999999964211 1 1236799999999998754332211 111 3568899999999864
Q ss_pred CCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
... ..++...++... . ....+..+++++||++|.|+++++++|.+.+
T Consensus 227 ~~~~~~~~~~l~~~l~~~~---~-------~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 227 IVPARRIQAEYVSALKLLR---K-------RSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcC---c-------cccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 211 111222222111 0 0001135789999999999999999998754
No 184
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=7.1e-17 Score=135.69 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=96.2
Q ss_pred eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh--hHHHHhhhhcccc
Q psy871 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE--SKSELQCLLTDES 142 (249)
Q Consensus 65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~~~~~~~~~~~~~ 142 (249)
...++.++|.+++|||++++++.+..+....+.++.++..........+..+.+|||||...... ..........++.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 34689999999999999999999877654444444555444444445566799999999442111 1111122336678
Q ss_pred ccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCC
Q psy871 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGR 222 (249)
Q Consensus 143 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (249)
.+|++++|+|+.+..+.. ..++.+++.. .++|+++|+||+|+... ..+..++.. ..
T Consensus 102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~---~~~pvilV~NK~D~~~~--~~~~~e~~~-lg---------------- 157 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEM--RANIYDFYS-LG---------------- 157 (456)
T ss_dssp HCSEEEEEEESSSCSCHH--HHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-GS----------------
T ss_pred hCCEEEEEEeCCCCCChH--HHHHHHHHHH---cCCCEEEEEECccchhh--hhhHHHHHH-cC----------------
Confidence 899999999987743333 3356666554 68999999999998642 111111111 11
Q ss_pred ceeEEEeeeccccchHHHHHHHhhhc
Q psy871 223 PIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 223 ~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
....+++||++|.|++++++.+.+.+
T Consensus 158 ~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 158 FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred CCceEEeecccccchHHHHHHHHhhc
Confidence 12467999999999999999998754
No 185
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.68 E-value=5.4e-16 Score=135.49 Aligned_cols=219 Identities=12% Similarity=0.061 Sum_probs=115.1
Q ss_pred HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCC---CCCCcccceeeeeeeeceEEEEcCCCCc
Q psy871 4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV---PTLHPILGYLGLWTKSGKLLFLGLDNAG 78 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~g~~~~G 78 (249)
+.+.+-+.+.-+|.. ...++|+|+|.+++|||||+|+|++..+.... .|..+..-.+.. ........ ....|
T Consensus 32 ~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~--~~~~~~~~-l~~~~ 108 (772)
T 3zvr_A 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN--STTEYAEF-LHCKG 108 (772)
T ss_dssp HHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE--CSSCEEEC-STTTT
T ss_pred HHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec--CCcchhhe-eccCC
Confidence 455666667777643 67889999999999999999999998763222 222221111110 11111111 11111
Q ss_pred -----hhHHHHHHhcC--CcccccCCcccceeceecc-ccccceEEEEEeCCCchhh----------hhhHHHHhhhhcc
Q psy871 79 -----KTTLLHMLKDD--RLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSDRERF----------EESKSELQCLLTD 140 (249)
Q Consensus 79 -----kssl~~~l~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~D~~g~~~~----------~~~~~~~~~~~~~ 140 (249)
...+...+... .......+. ........ .......+.++||||.... .........++.
T Consensus 109 ~~~~~~~~v~~~I~~~~~~~~g~~~~i--s~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~- 185 (772)
T 3zvr_A 109 KKFTDFEEVRLEIEAETDRVTGTNKGI--SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT- 185 (772)
T ss_dssp CCBCCHHHHHHHHHHHHHHHHCSTTCC--CSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-
T ss_pred cccCCHHHHHHHHHHHHhhhcCCCCcc--cccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-
Confidence 11111111100 000000011 11111111 1112235889999996541 112222233333
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEM 219 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
..+|++++|+|+++.....+....+..+ . ..+.|+++|+||+|+.+.... .++.. -+... .
T Consensus 186 -~~aDlIL~VVDAs~~~~~~d~l~ll~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l 247 (772)
T 3zvr_A 186 -KENCLILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------L 247 (772)
T ss_dssp -STTEEEEEEEETTSCSSSCHHHHHHHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------C
T ss_pred -cCCcEEEEEEcCCCCcchhHHHHHHHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------h
Confidence 6789999999998854433322233333 2 257999999999999864221 11111 00000 1
Q ss_pred CCCceeEEEeeeccccchHHHHHHHhh
Q psy871 220 SGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
.....+++++||++|.|++++++.+.+
T Consensus 248 ~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 248 RRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred hccCCceEEecccccccchhHHHHHHH
Confidence 123468999999999999999988875
No 186
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.68 E-value=2.9e-16 Score=122.62 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
+++++|+++|++|+|||||+|+|++.......+..+......
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~-------------------------------------- 75 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV-------------------------------------- 75 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCE--------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeE--------------------------------------
Confidence 578999999999999999999999876532222111111100
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhc---cccccceEEEEEECCChhhhHhh-HHHHHHHHhccC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT---DESLASSIVFLVDTSDRERFEES-KSELQCLLTDES 174 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~---~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~ 174 (249)
...+...+..+.+|||||++.+....+.....+. ....+|++++|+|++... +... ..++..+.....
T Consensus 76 -------~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~ 147 (262)
T 3def_A 76 -------MVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG 147 (262)
T ss_dssp -------EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC
T ss_pred -------EEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc
Confidence 0111223457999999999877554432221111 124789999999987654 3322 223433332211
Q ss_pred C-CCCcEEEEEecCCCCC
Q psy871 175 L-ASCPVLILGNKIDKHG 191 (249)
Q Consensus 175 ~-~~~p~ivv~nK~Dl~~ 191 (249)
. ...|+++|+||+|+..
T Consensus 148 ~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 148 KEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp GGGGGGEEEEEECTTCCC
T ss_pred hhhhcCEEEEEeCcccCC
Confidence 1 1259999999999953
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.68 E-value=6.7e-16 Score=135.56 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=52.4
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
...+.+|||||+..|..... ..+..+|++++|+|+++....+... .+.... . .++|+++++||+|+...
T Consensus 81 ~~~i~liDTPG~~df~~~~~------~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~-~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVE------RSMRVLDGAVMVYCAVGGVQPQSET-VWRQAN-K---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred ceeEEEEeCCCccchHHHHH------HHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHH-H---cCCCEEEEEeCCCcccc
Confidence 46799999999998876665 5677899999999999865544432 333322 2 57999999999999764
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.67 E-value=2.1e-16 Score=123.47 Aligned_cols=133 Identities=16% Similarity=0.084 Sum_probs=72.4
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
..++++||||.............+...+.. +++++++|+.......................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 469999999987665443322333344456 8889999986543322221111111111111468999999999987532
Q ss_pred CHHHHHHHhhhcccccCc-------ccC-------CCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 194 SEEEIRQYFGLYGLTTGK-------VAT-------PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
..+++.++++......+. ... ..... ....+++++||++|.|+++++++|.+.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence 222233322110000000 000 00000 0124789999999999999999998764
No 189
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=1.3e-16 Score=121.40 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=69.0
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+.++||+|+-.... .. ....+.+++|+|+++..... . ..... .+.|.++|+||+|+.+.
T Consensus 108 ~~d~iiidt~G~~~~~~-------~~--~~~~~~~i~vvd~~~~~~~~--~-~~~~~------~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV-------DF--DLGENYRVVMVSVTEGDDVV--E-KHPEI------FRVADLIVINKVALAEA 169 (221)
T ss_dssp TCSEEEEEEEEBSSGGG-------GC--CCSCSEEEEEEEGGGCTTHH--H-HCHHH------HHTCSEEEEECGGGHHH
T ss_pred CCCEEEEeCCCCCCCCc-------hh--ccccCcEEEEEeCCCcchhh--h-hhhhh------hhcCCEEEEecccCCcc
Confidence 45689999999511110 00 12467889999998753211 1 11111 25799999999998642
Q ss_pred --CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 --ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+++.+.++... +..+++++||++|.|+++++++|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 170 VGADVEKMKADAKLIN---------------PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HTCCHHHHHHHHHHHC---------------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhC---------------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 35666666665433 237899999999999999999998765
No 190
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.66 E-value=8e-16 Score=120.69 Aligned_cols=127 Identities=8% Similarity=0.004 Sum_probs=76.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.++++|+++|.+|+|||||+|+|++..+....++.+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~-------------------------------------- 78 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV-------------------------------------- 78 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE--------------------------------------
Confidence 457899999999999999999999876543222222111111
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhh---ccccccceEEEEEECCChhhhHhhH-HHHHHHHhccC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL---TDESLASSIVFLVDTSDRERFEESK-SELQCLLTDES 174 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~---~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~ 174 (249)
...+......+.+|||||++.+..........+ .....+|++++|+|++.. ++.... .++..+.....
T Consensus 79 -------~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~ 150 (270)
T 1h65_A 79 -------MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG 150 (270)
T ss_dssp -------EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC
T ss_pred -------EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC
Confidence 011122345699999999877654332111111 123579999999998653 233222 34444432211
Q ss_pred -CCCCcEEEEEecCCCCC
Q psy871 175 -LASCPVLILGNKIDKHG 191 (249)
Q Consensus 175 -~~~~p~ivv~nK~Dl~~ 191 (249)
....|+++|+||+|+..
T Consensus 151 ~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 151 KGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp GGGGGGEEEEEECCSCCC
T ss_pred cccccCEEEEEECcccCC
Confidence 01269999999999965
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=4.7e-15 Score=119.62 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=65.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchh-HHHHHHhcCCcccccCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT-TLLHMLKDDRLAQPVPT 97 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks-sl~~~l~~~~~~~~~~~ 97 (249)
.+|+++|.||||||||+|+|++..+. .+.+|+.+..+.+.+ .+.. ..+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~--------------~~~r~~~l~~~~~--------- 59 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM--------------PDPRLDALAEIVK--------- 59 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC--------------CCHHHHHHHHHHC---------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec--------------CCcccceeeeeec---------
Confidence 58999999999999999999987743 345577766665521 1111 11111110
Q ss_pred cccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhhhhccccccceEEEEEECCC
Q psy871 98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQCLLTDESLASSIVFLVDTSD 155 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~ 155 (249)
+ .......+.+||+||..++.+..+ ....++.+++.+|++++|+|+++
T Consensus 60 ~----------~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 60 P----------ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp C----------SEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c----------cceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 0 011234689999999886644322 33456778899999999999986
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=5.3e-16 Score=123.27 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=32.2
Q ss_pred CCCcEEEEEecCCCCCCCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 176 ASCPVLILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...|+++|+||+|+..... .+++.++++... ++++++||+++ |++++|..+.+.+
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHN-----------------IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTT-----------------CCCCCCC----------CHHHHHHH
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC-----------------CeEEecCCccc-cccHHHHHHHHHh
Confidence 4679999999999975311 234444444443 78999999999 9999998887754
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.64 E-value=2e-15 Score=128.85 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=56.5
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+..+.++||||+..|..-.. +.+..+|++|+|+|+...-..+... .++... . .++|.++++||+|..
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~------raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~-~---~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTY------RVLTAVDSALVVIDAAKGVEAQTRK-LMDVCR-M---RATPVMTFVNKMDRE 165 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHH------HHHHSCSEEEEEEETTTBSCHHHHH-HHHHHH-H---TTCCEEEEEECTTSC
T ss_pred ECCEEEEEEeCCCcHHHHHHHH------HHHHhcCceEEEeecCCCcccccHH-HHHHHH-H---hCCceEEEEecccch
Confidence 3467899999999999988777 7788999999999999854444432 333332 2 789999999999997
Q ss_pred CCCC
Q psy871 191 GAAS 194 (249)
Q Consensus 191 ~~~~ 194 (249)
....
T Consensus 166 ~ad~ 169 (548)
T 3vqt_A 166 ALHP 169 (548)
T ss_dssp CCCH
T ss_pred hcch
Confidence 7533
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=3.2e-16 Score=126.81 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=65.0
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA 192 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 192 (249)
+..+.++||||....... ....+|++++|+|++..+.++.+.. .. .+.|.++|+||+|+...
T Consensus 148 ~~~i~liDTpG~~~~~~~---------~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---------VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---------HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchHHH---------HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCCh
Confidence 456999999997644322 1378999999999987544332211 11 24688999999999753
Q ss_pred CCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 ASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.... ++.+.+..... ....+..+++++||++|.|+++++++|.+.+
T Consensus 210 ~~~~~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 210 TNVAIARHMYESALHILRR----------KYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------SBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc----------cccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1121 22222222110 0001135799999999999999999998753
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.9e-15 Score=118.67 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=89.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
.+|+++|.||||||||+|+|++.... ++.+|+.+..+.+.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~------------------------------------- 115 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIR------------------------------------- 115 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEE-------------------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEE-------------------------------------
Confidence 38999999999999999999986643 55666665555541
Q ss_pred ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhh-HhhHHHHHHHHhccCCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLLTDESLA 176 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~ 176 (249)
..+..+.++|+||...- ........+++..++.+|++++|+|++++..- ..+...+..+ .....
T Consensus 116 ------------~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~ 181 (376)
T 4a9a_A 116 ------------YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLN 181 (376)
T ss_dssp ------------ETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEET
T ss_pred ------------eCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhc
Confidence 12346889999996532 22333557788889999999999999987433 3233333332 22335
Q ss_pred CCcEEEEEecCCCCC----------CCCHHHHHHHhhhc
Q psy871 177 SCPVLILGNKIDKHG----------AASEEEIRQYFGLY 205 (249)
Q Consensus 177 ~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~ 205 (249)
..|.+++.||+|... ....+++...+...
T Consensus 182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~ 220 (376)
T 4a9a_A 182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY 220 (376)
T ss_dssp CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence 688999999999742 23455665555443
No 196
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.59 E-value=5e-15 Score=119.73 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=95.6
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC----------hhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD----------RERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
.+..+.+||++|++++...+. .++..++++++|+|+++ ..++.....++..+.......+.|++
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~------~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWI------HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGG------GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CCeeEEEEeCCCchhhhHHHH------HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 356789999999999988888 78899999999999999 45688887788888775555789999
Q ss_pred EEEecCCCCC-----------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 182 ILGNKIDKHG-----------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 182 vv~nK~Dl~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
+++||+|+.. ....++..+++......... ......+.+++|||+++.|++++|.++
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~------~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK------RKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS------CTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc------ccCCCceEEEEEECcCchhHHHHHHHH
Confidence 9999999852 24566776666532100000 001245889999999999999999999
Q ss_pred hhhc
Q psy871 245 ANYI 248 (249)
Q Consensus 245 ~~~i 248 (249)
.+.|
T Consensus 339 ~~~i 342 (353)
T 1cip_A 339 TDVI 342 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.58 E-value=4.5e-15 Score=129.13 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=83.0
Q ss_pred ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871 111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH 190 (249)
Q Consensus 111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 190 (249)
..+..+.++|||||..|..... +.+..+|++++|+|+...-..+.. ..+....+ .++|.++++||+|..
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~------raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVY------RSLSVLDGAILLISAKDGVQAQTR-ILFHALRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHH------HHHTTCSEEECCEESSCTTCSHHH-HHHHHHHH----HTCSCEECCEECCSS
T ss_pred ECCEEEEEEECCCcHHHHHHHH------HHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEeccccc
Confidence 3456688999999999988777 777899999999999885443332 23333322 589999999999987
Q ss_pred CCCCHHHHHHHhhhccccc---CcccC----CCCC----------------------------------------CCCCc
Q psy871 191 GAASEEEIRQYFGLYGLTT---GKVAT----PRSE----------------------------------------MSGRP 223 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~----------------------------------------~~~~~ 223 (249)
......-+.+..+.+...- +.... .... ....-
T Consensus 133 ~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (638)
T 3j25_A 133 GIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSL 212 (638)
T ss_dssp SCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccc
Confidence 7544443333333221100 00000 0000 00122
Q ss_pred eeEEEeeeccccchHHHHHHHhhhc
Q psy871 224 IELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 224 ~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
.|++..||+++.|++.+++.+.+++
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred ccccccccccCCCchhHhhhhhccc
Confidence 6789999999999999999998754
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=9.2e-15 Score=118.65 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=61.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL 98 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~ 98 (249)
++|+++|+||||||||+|+|++.... .+.+|+.+..+... .+..--..+...+ ..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~------------v~~~~l~~~~~~~----------~~ 59 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVP------------LEDERLYALQRTF----------AK 59 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEE------------CCCHHHHHHHHHH----------CB
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEe------------cChHHHHHHHHHh----------cc
Confidence 58999999999999999999986421 23334554444331 0110000111100 00
Q ss_pred ccceeceeccccccceEEEEEeCCCchhhhhhH-HHHhhhhccccccceEEEEEECCC
Q psy871 99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SELQCLLTDESLASSIVFLVDTSD 155 (249)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~~~~~~~~~~~d~ii~v~d~~~ 155 (249)
.. + .-......+.+||+||.....+.. .....++.+++.+|++++|+|+++
T Consensus 60 ~~----~--~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 60 GE----R--VPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TT----B--CCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cc----c--ccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 00 0 000123468999999987653221 223456677899999999999985
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=1.3e-14 Score=110.80 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=65.0
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA- 192 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~- 192 (249)
..++++|++|.-.... ..-...+..+.++|+......... .... .+.|.++|+||+|+.+.
T Consensus 119 ~d~~~id~~g~i~~~~---------s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~ 180 (226)
T 2hf9_A 119 IDLLFIENVGNLICPA---------DFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAV 180 (226)
T ss_dssp CSEEEEECCSCSSGGG---------GCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCccCcc---------hhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchh
Confidence 3588899988421111 111234556778886432211110 0111 24789999999998652
Q ss_pred -CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 193 -ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
...+++.+.++... ...+++++||++|.|+++++++|.+.+
T Consensus 181 ~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 181 GADIKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCCHHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 35666666666432 236899999999999999999998765
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.55 E-value=9.9e-15 Score=124.78 Aligned_cols=74 Identities=16% Similarity=0.049 Sum_probs=46.7
Q ss_pred EEEEEeCCCchhhhh--hHH---HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871 115 IVFLVDTSDRERFEE--SKS---ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~--~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 189 (249)
.+.+|||||...-.. ..+ .......++..+|++++|+|+++.........++..+ . ..+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-R---GHEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-T---TCGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-H---hcCCCEEEEEECCCc
Confidence 478999999764111 000 0111224567899999999998854444333344333 2 256899999999999
Q ss_pred CCC
Q psy871 190 HGA 192 (249)
Q Consensus 190 ~~~ 192 (249)
...
T Consensus 231 ~~~ 233 (550)
T 2qpt_A 231 VET 233 (550)
T ss_dssp SCH
T ss_pred cCH
Confidence 863
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=3.3e-15 Score=120.41 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=62.4
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..++++||+|...-... ....+|.+++|+|+...+..+.+...+ ...|.++++||+|+..
T Consensus 146 ~~~~~iliDT~Gi~~~~~~---------v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSETA---------VADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGD 207 (337)
T ss_dssp TTCCEEEEEECSSSSCHHH---------HHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTC
T ss_pred CCCCEEEEECCCCCcchhh---------HHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccC
Confidence 4567999999996532211 126799999999987543222111111 1246688889999754
Q ss_pred CCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 192 AAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 192 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
... .+++...+..... ....+..+++++||+++.|++++++.|.+..
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~----------~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTP----------PSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCC----------SBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccc----------cccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 211 1122222211110 0000125789999999999999999987653
No 202
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=105.00 Aligned_cols=106 Identities=11% Similarity=0.162 Sum_probs=80.5
Q ss_pred CchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHH---HHHHhccC-CCCCcEEEEEecC-CCCCCCCHHH
Q psy871 123 DRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSEL---QCLLTDES-LASCPVLILGNKI-DKHGAASEEE 197 (249)
Q Consensus 123 g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~ 197 (249)
|++.+...++ .|+..+|++|+|+|+++..... ...++ ..++.+.. ..+.|++|++||. |+....+..+
T Consensus 111 GQ~klRplWr------~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~E 183 (227)
T 3l82_B 111 SRYSVIPQIQ------KVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFY 183 (227)
T ss_dssp ------CCHH------HHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHH
T ss_pred cHHHHHHHHH------HHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHH
Confidence 6778888888 8889999999999999876554 44455 44444432 4689999999995 8888889999
Q ss_pred HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 198 IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
+.+.+.... . .+.+.+++|||++|+|+.+.++||.+.+
T Consensus 184 I~e~L~L~~------------l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 184 LAHELHLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHHHTTGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHHHcCCcC------------C-CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 998887654 2 2569999999999999999999999875
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=3.4e-14 Score=125.22 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=54.3
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.++|||||-.|..-.. +.+..+|++++|+|+...-..+... .++...+ .++|.++++||+|...
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~------~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVE------RSLRVLDGAVVVFCGTSGVEPQSET-VWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHH------HHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----HTCCEEEEEECSSSTT
T ss_pred CCEEEEEEeCCCCcccHHHHH------HHHHHhCeEEEEEECCCCCchhHHH-HHHHHHH----cCCCeEEEEccccccC
Confidence 357899999999999988777 7778999999999998854433322 3333333 5899999999999876
Q ss_pred C
Q psy871 192 A 192 (249)
Q Consensus 192 ~ 192 (249)
.
T Consensus 152 a 152 (709)
T 4fn5_A 152 A 152 (709)
T ss_dssp C
T ss_pred c
Confidence 4
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=116.93 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=25.2
Q ss_pred CCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 176 ASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 176 ~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.+.|+|+|+||+|+...... +++.+.+...+ ++++++||+++.++++++..+.+.
T Consensus 166 ~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~-----------------i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK-----------------IKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT-----------------CCCCCCC-----------------
T ss_pred ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC-----------------CeEEeCCCCCCcCHHHHHHHHHhh
Confidence 47999999999999752111 23333344333 788999999999999888777654
No 205
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.52 E-value=2e-14 Score=128.62 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=54.4
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
.+..+.+|||||+.+|..... .++..+|++++|+|+++..+++... .+..... .++|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~------~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHH------HHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCeEEEEECCCcch
Confidence 356799999999999877666 6678899999999999987776643 2333322 5799999999999863
No 206
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.52 E-value=3.3e-14 Score=115.33 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=87.5
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC----------hhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD----------RERFEESKSELQCLLTDESLASCPVL 181 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~i 181 (249)
.+..+.+||++|++++...+. .++..++++++|+|+++ ..++.....++..+.......+.|++
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~------~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWF------ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp TTEEEEEEEECC-------CT------TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CCeEEEEEeccchhhhhhhHH------HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 356789999999998887777 77889999999999999 67888888888888766555789999
Q ss_pred EEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871 182 ILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243 (249)
Q Consensus 182 vv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 243 (249)
+++||+|+.. ....++..+++........ .......+.+++|||+++.|++++|.+
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~------~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKR------RDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTC------SSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhh------cccCCCceEEEEEecCCchhHHHHHHH
Confidence 9999999852 1456666665521110000 000023478999999999999999999
Q ss_pred Hhhhc
Q psy871 244 LANYI 248 (249)
Q Consensus 244 l~~~i 248 (249)
+.+.|
T Consensus 347 v~~~i 351 (362)
T 1zcb_A 347 VKDTI 351 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=6.5e-14 Score=111.33 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=81.8
Q ss_pred EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871 115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 193 (249)
.+.+||+ ++++..+.+ .+++.+|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..
T Consensus 64 ~~~iwD~--qer~~~l~~------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTK------PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDED 131 (301)
T ss_dssp SEEEEEE--CCCSCEETT------TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHH
T ss_pred eEEEEEE--ccccceeec------cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCch
Confidence 6889999 788888888 7889999999999999987 67767777765532 579999999999997532
Q ss_pred CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871 194 SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 246 (249)
..++..++++... .. .++++|||++|.|+++++.++..
T Consensus 132 ~v~~~~~~~~~~~--------------~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 132 DLRKVRELEEIYS--------------GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHHHT--------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred hHHHHHHHHHHHh--------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 2233445554433 11 67999999999999999998764
No 208
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.46 E-value=1.1e-13 Score=113.05 Aligned_cols=125 Identities=12% Similarity=0.100 Sum_probs=90.3
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC----------hhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD----------RERFEESKSELQCLLTDESLASCPVLI 182 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~iv 182 (249)
+..+.+||++|++++...+. .++..++++++|+|+++ ..++.....++..+.......++|+++
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~------~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiL 289 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWI------QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 289 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGG------GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEE
T ss_pred CccceecccchhhhhhhhhH------hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEE
Confidence 46789999999999998888 78899999999999999 888998888888887665557899999
Q ss_pred EEecCCCCCC-----C---------------------------CHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEe
Q psy871 183 LGNKIDKHGA-----A---------------------------SEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMC 229 (249)
Q Consensus 183 v~nK~Dl~~~-----~---------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (249)
++||+|+..+ . ..++...++.. +.... . ........+.+++|
T Consensus 290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~-~----~~~~~~~~~~~~~T 364 (402)
T 1azs_C 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS-T----ASGDGRHYCYPHFT 364 (402)
T ss_dssp EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHH-H----TSCTTSSCEEEEEC
T ss_pred EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhh-c----cccccCcccEEEEE
Confidence 9999998431 0 01223333211 00000 0 00001123678999
Q ss_pred eeccccchHHHHHHHhhhc
Q psy871 230 SVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 230 Sa~~g~gv~~l~~~l~~~i 248 (249)
||+++.|++++|.++.+.|
T Consensus 365 SA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHH
Confidence 9999999999999987654
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.41 E-value=4.8e-13 Score=103.17 Aligned_cols=107 Identities=11% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHH---HHHhcc-CCCCCcEEEEEec-CCCCCCCCHH
Q psy871 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ---CLLTDE-SLASCPVLILGNK-IDKHGAASEE 196 (249)
Q Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~ 196 (249)
.|++.+...++ .|+..+|++|+|+|+++.+.+. ...++. .++.+. ...+.|++|++|| .|+....+..
T Consensus 195 GGQ~~lRplWr------~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~ 267 (312)
T 3l2o_B 195 GSRYSVIPQIQ------KVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCF 267 (312)
T ss_dssp --CCCCCHHHH------HHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHH
T ss_pred CCHHHHHHHHH------HHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHH
Confidence 46778888888 8889999999999999987654 333333 444332 2478999999996 6998888999
Q ss_pred HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871 197 EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 248 (249)
++.+.+.... . .+.+.+++|||++|+|+.+.++||.+.+
T Consensus 268 EI~e~L~L~~------------l-~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 268 YLAHELHLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HHHHHTTGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HHHHHcCCcc------------C-CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 9988887654 2 2569999999999999999999999875
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1e-10 Score=95.57 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=36.9
Q ss_pred ccccceecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCccccee
Q psy871 14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYL 60 (249)
Q Consensus 14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~ 60 (249)
.+|-..+..+++++|++|||||||+|+|++..+. .+..|+.+..+.+
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v 63 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV 63 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee
Confidence 4566667789999999999999999999996652 4445677776666
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.26 E-value=4.5e-12 Score=103.31 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=59.3
Q ss_pred cccccceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchh-HHHHHHhc
Q psy871 13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT-TLLHMLKD 88 (249)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks-sl~~~l~~ 88 (249)
.++|...+..+|+++|+||||||||+|+|++..+. .+.+|+.+..+.+.+ .+.. ..+.....
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--------------~~~r~~~l~~~~~ 79 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--------------PDERFDFLCQYHK 79 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--------------CCHHHHHHHHHHC
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--------------CCccceeeccccC
Confidence 35667778899999999999999999999987653 344566655555421 1111 01111000
Q ss_pred CCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhhhhccccccceEEEEEECCCh
Q psy871 89 DRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQCLLTDESLASSIVFLVDTSDR 156 (249)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~ 156 (249)
........+.+||+||.....+..+ ....++.+++.+|++++|+|+++.
T Consensus 80 -------------------p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 80 -------------------PASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------------------CSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred -------------------cccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 0011234689999999876544322 233567888999999999999764
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.20 E-value=1.6e-11 Score=97.51 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=71.8
Q ss_pred chhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC---HHHHH
Q psy871 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS---EEEIR 199 (249)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~ 199 (249)
++++..+.+ .++..+|++++|+|++++. ++..+..++..+.. .++|+++|+||+|+.++.. .+++.
T Consensus 66 ~er~~~l~r------~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~ 135 (302)
T 2yv5_A 66 EERKNLLIR------PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWI 135 (302)
T ss_dssp CCCSCEEET------TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CChHHHHhH------HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHH
Confidence 445555555 5789999999999999886 77767767765432 6899999999999976321 23333
Q ss_pred HHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 200 QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+.++..+ .+++++||++|.|++++++.+...
T Consensus 136 ~~~~~~g-----------------~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 136 SIYRDAG-----------------YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp HHHHHTT-----------------CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred HHHHHCC-----------------CeEEEEECCCCCCHHHHHhhccCc
Confidence 3343333 689999999999999999987643
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.12 E-value=1.7e-10 Score=97.09 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=65.7
Q ss_pred ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE-EEEEecCCCC
Q psy871 113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV-LILGNKIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~ 190 (249)
+..++++||||..... .....+..... ...+|.+++|+|+....... .....+ .. .+|+ .+|+||+|..
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~~~---~~a~~~-~~----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQACE---AQAKAF-KD----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTTHH---HHHHHH-HH----HHCCCCEEEECTTSC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEeccccccHH---HHHHHH-Hh----hcCceEEEEeCCccc
Confidence 4568999999965422 22222222222 23789999999998753211 122222 11 2675 8999999987
Q ss_pred CCCCHHHHHHHhhhccccc-----CcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHHhhh
Q psy871 191 GAASEEEIRQYFGLYGLTT-----GKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWLANY 247 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~ 247 (249)
..... ...........- .... ... ....+.+++|+..|.| ++++++++.+.
T Consensus 254 ~~~g~--~l~~~~~~g~PI~fig~ge~~---~dl-~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGG--ALSAVAATKSPIIFIGTGEHI---DDF-EPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTH--HHHHHHHHCCCEEEEECSSST---TCE-ECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHH--HHHHHHHhCCCeEEeccccch---hhh-hccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53221 111222111000 0000 000 0123456789999999 99999998754
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=1.7e-11 Score=99.94 Aligned_cols=80 Identities=10% Similarity=-0.108 Sum_probs=45.0
Q ss_pred EEEEeCCCchhhhhhHH-HHhhhhccc---cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 116 VFLVDTSDRERFEESKS-ELQCLLTDE---SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 116 ~~v~D~~g~~~~~~~~~-~~~~~~~~~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+.++||||......... .....+..+ ...+.+++++++.....+..+.. +......+.|+++++||+|...
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccc
Confidence 78999999654332211 112222333 77899999999854322211110 1111125689999999999876
Q ss_pred CCCHHHHHH
Q psy871 192 AASEEEIRQ 200 (249)
Q Consensus 192 ~~~~~~~~~ 200 (249)
....+...+
T Consensus 289 ~~~~~~~~~ 297 (369)
T 3ec1_A 289 RTKLEKADS 297 (369)
T ss_dssp EEEGGGHHH
T ss_pred cccHHHHHH
Confidence 333333333
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.98 E-value=3.8e-09 Score=87.31 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=54.8
Q ss_pred ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+..++++||+|..... .....+... .....+|.+++|+|+....... .....+.. .-.+..+|+||+|...
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i-~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~----~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQI-SNVIHPHEVILVIDGTIGQQAY---NQALAFKE----ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHH-HHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH----SCTTEEEEEECCSSCS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHH-HHhhcCceEEEEEeCCCchhHH---HHHHHHHh----hCCCeEEEEECCCCcc
Confidence 3568899999954322 122222222 2234579999999998743322 23333322 2345679999999864
Q ss_pred CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
. ...+........ .|+.+++. |+++++
T Consensus 254 ~--gG~~ls~~~~~g-----------------~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 254 K--GGGALSAVAATG-----------------APIKFIGT--GEKIDD 280 (443)
T ss_dssp S--HHHHHHHHHTTC-----------------CCEEEEEC--SSSTTC
T ss_pred c--ccHHHHHHHHHC-----------------CCEEEEEc--CCChHH
Confidence 2 233444343333 56666664 776654
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=2.1e-11 Score=99.38 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=48.0
Q ss_pred EEEEeCCCchhhhhhHH----HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 116 VFLVDTSDRERFEESKS----ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 116 ~~v~D~~g~~~~~~~~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
+.++||||......... .....+......+.++++++.........+. . +......+.|+++++||+|...
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-~----~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA-R----FDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-E----EEEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-E----EEEecCCCceEEEEecCccccc
Confidence 78999999654332211 1111222246788999999885432222111 0 1111125689999999999987
Q ss_pred CCCHHHHHHHhhh
Q psy871 192 AASEEEIRQYFGL 204 (249)
Q Consensus 192 ~~~~~~~~~~~~~ 204 (249)
....+...+.++.
T Consensus 288 ~~~~~~~~~~~~~ 300 (368)
T 3h2y_A 288 RTKLEKADELYKN 300 (368)
T ss_dssp EEEHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 5555555555444
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.97 E-value=1.1e-08 Score=84.09 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=62.9
Q ss_pred EEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCC--hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC-
Q psy871 115 IVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSD--RERFEESKSELQCLLTDESLASCPVLILGNKIDKH- 190 (249)
Q Consensus 115 ~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~- 190 (249)
.+.++|++|...... ..+.+..+ .+...+..+. ++... .... .+...+.. .+.|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~--~L~~~~~~~~-lS~G~~~kqrv-----~la~aL~~---~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKM--KFYEYDFFII-ISATRFKKNDI-----DIAKAISM---MKKEFYFVRTKVDSDI 189 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHT--TGGGCSEEEE-EESSCCCHHHH-----HHHHHHHH---TTCEEEEEECCHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHc--CCCccCCeEE-eCCCCccHHHH-----HHHHHHHh---cCCCeEEEEecCcccc
Confidence 367889988542111 11111111 1223344444 77763 2211 22222222 578999999999974
Q ss_pred --------CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee--ccccchHHHHHHHhhhc
Q psy871 191 --------GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV--LMRQGYGDGFRWLANYI 248 (249)
Q Consensus 191 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~g~gv~~l~~~l~~~i 248 (249)
+...++++.+.++......- .+.......++.+|+ ..+.|++++.+.+.+.+
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l------~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIRLNCVNTF------RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHHHH------HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHH------HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 23456666665555420000 000011246899999 67778999999998765
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.9e-09 Score=88.64 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
++++|+|++|||||||+|.|++..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 349999999999999999998763
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=1.9e-09 Score=84.05 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+++++|+|++|||||||+|.|++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998743
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.90 E-value=4.3e-09 Score=87.30 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC-c-EEEEEecCCC
Q psy871 113 DAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC-P-VLILGNKIDK 189 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl 189 (249)
+..++++||||...... ....+.. +.....+|.+++|+|+.... +.......+ . ... | ..+|+||+|.
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~-i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQ-IKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHH-TTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHH-HHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 44589999999654321 2222222 23344689999999997653 222222222 1 235 5 8899999998
Q ss_pred CCCCCHHHHHHHhhhcccccCcccCCCCCC--CCCceeEEEeeeccccc-hHHHHHHHhhh
Q psy871 190 HGAASEEEIRQYFGLYGLTTGKVATPRSEM--SGRPIELFMCSVLMRQG-YGDGFRWLANY 247 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~ 247 (249)
... ...+..........--+. ...... -....+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~--~g~~l~~~~~~~~pi~~i-g~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAK--GGGALSAVAETKAPIKFI-GIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CST--THHHHHHHHHSSCCEEEE-CCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccc--hHHHHHHHHHHCCCEEEe-ecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 542 122323333222110000 000000 01223456788999988 77776665543
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.88 E-value=2.9e-09 Score=83.61 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=66.6
Q ss_pred eCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHH
Q psy871 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIR 199 (249)
Q Consensus 120 D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 199 (249)
..|||. .....++...+..+|+++.|+|+.++.+.... .+.+++ .++|.++|+||+|+.+....+.+.
T Consensus 5 w~PGhm-----~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~ 72 (282)
T 1puj_A 5 WFPGHM-----AKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWK 72 (282)
T ss_dssp ----CT-----THHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHH
T ss_pred CCchHH-----HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHH
Confidence 456764 12234555778899999999999998776532 344442 579999999999998632222333
Q ss_pred HHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 200 QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
++++..+ .+++++||+++.|++++++.+.+.
T Consensus 73 ~~~~~~g-----------------~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 73 EHFENQG-----------------IRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HHHHTTT-----------------CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHhcC-----------------CcEEEEECCCcccHHHHHHHHHHH
Confidence 3333222 579999999999999999887654
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.83 E-value=1.1e-08 Score=84.50 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=86.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcC-Cccccc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDD-RLAQPV 95 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~-~~~~~~ 95 (249)
.++..|+++|++||||||++..|...-.. ...++.++..+.-..... +..+... ..+...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~-----------------~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK-----------------RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHH-----------------TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCeEEEEecCccchhHHHHHHHHHHhcCCceee
Confidence 34678999999999999999999742110 122333433333222211 1111111 010000
Q ss_pred C-Ccccceece---eccccccceEEEEEeCCCchh---hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871 96 P-TLHPTRRVW---KDYFPAVDAIVFLVDTSDRER---FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC 168 (249)
Q Consensus 96 ~-~~~~~~~~~---~~~~~~~~~~~~v~D~~g~~~---~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 168 (249)
. ......... -......+..++++||+|... -......+...... ...+.+++|+|+........ ....
T Consensus 158 ~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq~a~~---~a~~ 233 (433)
T 3kl4_A 158 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV-LKPDDVILVIDASIGQKAYD---LASR 233 (433)
T ss_dssp CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGGGGHH---HHHH
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh-hCCcceEEEEeCccchHHHH---HHHH
Confidence 0 000000000 011122345688999999533 11222222222222 24689999999987533222 3333
Q ss_pred HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871 169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238 (249)
Q Consensus 169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 238 (249)
+.. .-.+..+|+||+|... ....+........ .|+..++. |++++
T Consensus 234 f~~----~~~~~gVIlTKlD~~a--~~G~als~~~~~g-----------------~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 234 FHQ----ASPIGSVIITKMDGTA--KGGGALSAVVATG-----------------ATIKFIGT--GEKID 278 (433)
T ss_dssp HHH----HCSSEEEEEECGGGCS--CHHHHHHHHHHHT-----------------CEEEEEEC--CSSSS
T ss_pred Hhc----ccCCcEEEEecccccc--cchHHHHHHHHHC-----------------CCEEEEEC--CCChH
Confidence 322 1246789999999763 2334444444444 66666664 66653
No 223
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=1.3e-08 Score=82.98 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=65.7
Q ss_pred chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHh
Q psy871 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYF 202 (249)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~ 202 (249)
.++|.+..+ ..++.++++++|+|++++.. .....+.++. .++|+++|+||+|+... ...+++.+++
T Consensus 56 ~e~f~~~l~------~i~~~~~~il~VvD~~d~~~--~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l 122 (368)
T 3h2y_A 56 DDDFLRILN------GIGKSDALVVKIVDIFDFNG--SWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWM 122 (368)
T ss_dssp CHHHHHHHH------HHHHSCCEEEEEEETTSHHH--HCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHH
T ss_pred HHHHHHHHH------HHhccCcEEEEEEECCCCcc--cHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHH
Confidence 456666555 44567789999999998642 2112333331 47899999999999763 3344555543
Q ss_pred hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+..... ...+..+++++||++|.|++++++.+.+.
T Consensus 123 ~~~~~~----------~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 123 RYSAKQ----------LGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHHH----------TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH----------cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 322100 11112379999999999999999998653
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.73 E-value=2.5e-08 Score=81.31 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=66.9
Q ss_pred chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHh
Q psy871 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYF 202 (249)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~ 202 (249)
+++|.+... ..+..++++++|+|++++.+- ....+.+++ .+.|+++|+||+|+... ...+.+.+++
T Consensus 58 ~e~f~~~L~------~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l 124 (369)
T 3ec1_A 58 DDDFLSMLH------RIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWM 124 (369)
T ss_dssp -CHHHHHHH------HHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHH
T ss_pred HHHHHHHHH------HhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHH
Confidence 556666555 445788999999999997632 111333332 47899999999999764 3345555554
Q ss_pred hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
+..... ...+..+++++||++|.|++++++.+.+.
T Consensus 125 ~~~~~~----------~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 125 RRMAEE----------LGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HHHHHT----------TTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHH----------cCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 332100 11122478999999999999999998754
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.71 E-value=1e-07 Score=75.29 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=85.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcC-CcccccC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDD-RLAQPVP 96 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~-~~~~~~~ 96 (249)
+...++++|++|+||||++..|...... ..+++.+.+.+.-+..+. +..+... ... ..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~-----------------~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~-v~~ 158 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKK-----------------KGFKVGLVGADVYRPAALEQLQQLGQQIGVP-VYG 158 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHH-----------------TTCCEEEEECCCSSSHHHHHHHHHHHHHTCC-EEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------CCCeEEEEecCCCCHHHHHHHHHHhccCCeE-EEe
Confidence 3558899999999999999999742111 123444444443322221 1111110 010 000
Q ss_pred Ccc--cceecee---ccccccceEEEEEeCCCchh--hhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871 97 TLH--PTRRVWK---DYFPAVDAIVFLVDTSDRER--FEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC 168 (249)
Q Consensus 97 ~~~--~~~~~~~---~~~~~~~~~~~v~D~~g~~~--~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 168 (249)
+.. ....... ......+..++++||||... ... ....+... .....+|.+++|+|+... .........
T Consensus 159 ~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i-~~~~~~d~vllVvda~~g---~~~~~~~~~ 234 (297)
T 1j8m_F 159 EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNI-YEAIKPDEVTLVIDASIG---QKAYDLASK 234 (297)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHH-HHHHCCSEEEEEEEGGGG---GGHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHH-HHHhcCCEEEEEeeCCch---HHHHHHHHH
Confidence 000 0000000 11111345689999999765 221 22212111 223468999999998753 222223333
Q ss_pred HHhccCCCCCc-EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 169 LLTDESLASCP-VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 169 ~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
+. ...| ..+|+||+|... ....+........ .|+..++ .|+++++
T Consensus 235 ~~-----~~~~i~gvVlnk~D~~~--~~g~~~~~~~~~~-----------------~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 235 FN-----QASKIGTIIITKMDGTA--KGGGALSAVAATG-----------------ATIKFIG--TGEKIDE 280 (297)
T ss_dssp HH-----HTCTTEEEEEECGGGCT--THHHHHHHHHTTT-----------------CCEEEEE--CSSSTTC
T ss_pred HH-----hhCCCCEEEEeCCCCCc--chHHHHHHHHHHC-----------------cCEEEEe--CCCChhh
Confidence 32 1356 778999999753 2333444444433 5666655 5666654
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.61 E-value=1e-08 Score=79.52 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=60.5
Q ss_pred hhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCC
Q psy871 136 CLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP 215 (249)
Q Consensus 136 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
++...+..+|+++.|+|+.++.+.... .+. + . ++|.++|+||+|+.+....+.+.++++..+
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g--------- 75 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQG--------- 75 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHcC---------
Confidence 344667899999999999998766542 111 1 1 799999999999986422233334443322
Q ss_pred CCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871 216 RSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247 (249)
Q Consensus 216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 247 (249)
.++ .+||+++.|++++++.+.+.
T Consensus 76 --------~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 76 --------KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --------CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --------CeE-EEECCCCcCHHHHHHHHHHh
Confidence 467 99999999999999887653
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.51 E-value=1.5e-07 Score=75.33 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=84.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CC--cccc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DR--LAQP 94 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~--~~~~ 94 (249)
+.-.++++|++||||||+++.|.+.... ..+++.+.+.+....... ...+.. .. +...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------------~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q 190 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-----------------HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKH 190 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-----------------TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------------cCCEEEEEeecccccchHHHHHHHHHHcCceEEec
Confidence 4568999999999999999999753111 233455555444322111 111110 00 0000
Q ss_pred cCCcccceeceec--cccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 95 VPTLHPTRRVWKD--YFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
..+.......... .....+..+.++|++|.... ......+...... -..|-.++++|+.... ++......+..
T Consensus 191 ~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra-l~~de~llvLDa~t~~---~~~~~~~~~~~ 266 (328)
T 3e70_C 191 SYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV-TKPNLVIFVGDALAGN---AIVEQARQFNE 266 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHH-HCCSEEEEEEEGGGTT---HHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHH-hcCCCCEEEEecHHHH---HHHHHHHHHHH
Confidence 0000000000000 00011233567999996432 2222323222222 2378889999987653 22223344322
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871 172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 239 (249)
. .....+++||.|-.. ....+........ .|+..++ +|+++++
T Consensus 267 ~----~~it~iilTKlD~~a--~~G~~l~~~~~~~-----------------~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 267 A----VKIDGIILTKLDADA--RGGAALSISYVID-----------------APILFVG--VGQGYDD 309 (328)
T ss_dssp H----SCCCEEEEECGGGCS--CCHHHHHHHHHHT-----------------CCEEEEE--CSSSTTC
T ss_pred h----cCCCEEEEeCcCCcc--chhHHHHHHHHHC-----------------CCEEEEe--CCCCccc
Confidence 1 134478899999633 2233444444444 5666665 6666644
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.41 E-value=1.6e-07 Score=73.58 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
..+..+++++|.||+|||||+|+|++..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCc
Confidence 3456799999999999999999998754
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=1.8e-07 Score=73.96 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=59.1
Q ss_pred cccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC----HHHHHHHhhhcccccCcccCC
Q psy871 140 DESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVATP 215 (249)
Q Consensus 140 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~ 215 (249)
.++.+|.+++|+|+.+|..-.. .+.+++......++|.++|+||+|+.++.. .+++...++..+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g--------- 150 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG--------- 150 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC---------
Confidence 4678999999999997655443 233333221126899999999999987532 234444444444
Q ss_pred CCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871 216 RSEMSGRPIELFMCSVLMRQGYGDGFRWL 244 (249)
Q Consensus 216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 244 (249)
.+++.+||+++.|+++++..+
T Consensus 151 --------~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 151 --------YDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp --------CCEEECCHHHHTTCTTTGGGG
T ss_pred --------CeEEEEecCCCCCHHHHHhhc
Confidence 689999999999998877654
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=4.1e-07 Score=77.99 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.8
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcCC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
..+..+|+|+|+||+|||||+|+|++..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4566799999999999999999998865
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.35 E-value=1.7e-06 Score=75.10 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.-+.++|+|++|||||||++.|.+-.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 34569999999999999999999864
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.35 E-value=1.5e-06 Score=72.58 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.1
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.-.++|+|+.|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345899999999999999999975
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.27 E-value=1.1e-05 Score=63.59 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...++++|+.||||||++..|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.26 E-value=3.6e-07 Score=70.83 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=21.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
.+++++|.+|+|||||+|+|.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999986544
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=5.4e-06 Score=66.82 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=52.9
Q ss_pred ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871 141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220 (249)
Q Consensus 141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
.+.+|.+++|... .|..-.. .+.+++......++|.++|+||+|+.+....+.+.++...+.
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~---~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-------------- 189 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLN---IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-------------- 189 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHH---HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH--------------
T ss_pred HhcCCEEEEEEeC-CCCCCHH---HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH--------------
Confidence 5778999977554 4433222 233332111115788999999999986422112333333321
Q ss_pred CCceeEEEeeeccccchHHHHHHHh
Q psy871 221 GRPIELFMCSVLMRQGYGDGFRWLA 245 (249)
Q Consensus 221 ~~~~~~~~~Sa~~g~gv~~l~~~l~ 245 (249)
....+++.+||+++.|++++...+.
T Consensus 190 ~~G~~v~~~Sa~~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 190 NIGYRVLMVSSHTQDGLKPLEEALT 214 (358)
T ss_dssp TTTCCEEECBTTTTBTHHHHHHHHT
T ss_pred hCCCcEEEEecCCCcCHHHHHHhcC
Confidence 0126799999999999999887653
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.11 E-value=2.4e-05 Score=62.35 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+++|++|+||||++..|..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.08 E-value=1.1e-05 Score=63.72 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=76.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCcccccC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQPVP 96 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~~~~ 96 (249)
+...++++|+.|+||||++..|.+.... ..+++.+.+.+....... +..+.. ........
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-----------------~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~ 159 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-----------------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-----------------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc
Confidence 4558899999999999999999753211 234555555555443322 111111 01110000
Q ss_pred Ccccce-eceecc---ccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 97 TLHPTR-RVWKDY---FPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 97 ~~~~~~-~~~~~~---~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
+..... ...... ....+..++++|+|+..... ............ -.++.+++|+|+... .+.......+..
T Consensus 160 ~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~-~~~~~~~lv~~~~~~---~~~~~~~~~~~~ 235 (295)
T 1ls1_A 160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV-LGPDEVLLVLDAMTG---QEALSVARAFDE 235 (295)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH-HCCSEEEEEEEGGGT---HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh-cCCCEEEEEEeCCCc---HHHHHHHHHHhh
Confidence 000000 000011 11134568999999754331 112222222222 247888899998753 222222333321
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871 172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 206 (249)
. -...-+|+||+|.... ...+.+.....+
T Consensus 236 ~----~~i~givlnk~d~~~~--~g~~~~~~~~~~ 264 (295)
T 1ls1_A 236 K----VGVTGLVLTKLDGDAR--GGAALSARHVTG 264 (295)
T ss_dssp H----TCCCEEEEECGGGCSS--CHHHHHHHHHHC
T ss_pred c----CCCCEEEEECCCCCcc--HHHHHHHHHHHC
Confidence 1 1234578999997542 234444444444
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.08 E-value=1.6e-05 Score=66.00 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCC
Q psy871 113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKH 190 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 190 (249)
+..++++||||.-... .....+.. +.....++.+++|+|+..... .......+- ...+ .-+|+||+|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~-~~~~~~p~~vllVvda~~g~~---~~~~~~~f~-----~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQ-VHASINPVETLFVVDAMTGQD---AANTAKAFN-----EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHH-HHHHSCCSEEEEEEETTBCTT---HHHHHHHHH-----HHSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHH-HHHhhcCcceeEEeecchhHH---HHHHHHHHh-----ccCCCeEEEEecCCCC
Confidence 4568999999965432 22222211 123346889999999976422 222333331 1234 34689999975
Q ss_pred CC
Q psy871 191 GA 192 (249)
Q Consensus 191 ~~ 192 (249)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.07 E-value=2.8e-05 Score=61.47 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+++|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345799999999999999999975
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.06 E-value=7.9e-06 Score=67.44 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=71.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcC-CcccccC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDD-RLAQPVP 96 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~-~~~~~~~ 96 (249)
+...++++|++|+||||++..|...... ...++.+.+.+....... +..+... .++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~-----------------~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~ 159 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-----------------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-----------------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCeEEEeeccccCchhHHHHHHhcccCCccEEec
Confidence 4567999999999999999999753211 233455555554443332 1111110 0110000
Q ss_pred Cccc-ceeceecccc---ccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871 97 TLHP-TRRVWKDYFP---AVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT 171 (249)
Q Consensus 97 ~~~~-~~~~~~~~~~---~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 171 (249)
+... ........+. ..+..++++||||.-... .....+... .....+|.+++|+|+... ++.......+..
T Consensus 160 ~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i-~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~ 235 (425)
T 2ffh_A 160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL-KEVLGPDEVLLVLDAMTG---QEALSVARAFDE 235 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHH-HHHHCCSEEEEEEEGGGT---THHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHh-hhccCCceEEEEEeccch---HHHHHHHHHHHh
Confidence 1000 0011011111 134558899999864322 112211111 112358889999998753 222223333321
Q ss_pred ccCCCCCcEEEEEecCCCCC
Q psy871 172 DESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 172 ~~~~~~~p~ivv~nK~Dl~~ 191 (249)
. -...-+|+||.|...
T Consensus 236 ~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 236 K----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp H----TCCCEEEEESGGGCS
T ss_pred c----CCceEEEEeCcCCcc
Confidence 1 112567899999643
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.03 E-value=2.4e-05 Score=61.88 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.-.++++|++|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345899999999999999999975
No 242
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.88 E-value=0.00032 Score=55.82 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-..++|+|+.|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4578999999999999999998753
No 243
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.82 E-value=1.9e-05 Score=65.49 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.7
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..+-..|+|+|++++|||||+|+|.+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456778999999999999999999863
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.82 E-value=1.2e-05 Score=59.93 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=29.6
Q ss_pred HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+.+.++..+.-. ..+...|+|+|++|||||||++.|.+.
T Consensus 7 ~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 566666555433 345568999999999999999999763
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.76 E-value=1.3e-05 Score=58.37 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+++++|++|||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998643
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=1.5e-05 Score=58.05 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...++|+||+|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999864
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.71 E-value=1.5e-05 Score=58.24 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=40.6
Q ss_pred EEEeccCCcchHHHHHHHhcCC-----CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871 24 LLFLGLDNAGKTTLLHMLKDDR-----LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 93 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~ 93 (249)
|+|+||+|||||||+++|.... ++.+.+|..+..+.. ...+..+ ..+..|......+.|.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~----~G~dY~F-----vs~~eF~~~i~~g~flE 69 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV----NGKDYNF-----VSVDEFKSMIKNNEFIE 69 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC----BTTTBEE-----CCHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc----CCceeEe-----ecHHHHHHHHHcCCEEE
Confidence 8899999999999999998542 235666777666665 3222222 33556666666666553
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.70 E-value=1.6e-05 Score=58.87 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...++|+||+|||||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999863
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.59 E-value=3.3e-05 Score=56.90 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=22.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...|+|+||+|||||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4557899999999999999999864
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.59 E-value=3e-05 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+||+|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998643
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.57 E-value=3.5e-05 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..++|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 47899999999999999999875
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.56 E-value=0.00027 Score=52.27 Aligned_cols=79 Identities=8% Similarity=-0.009 Sum_probs=46.6
Q ss_pred eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCCCcEEEEEecCCCCC
Q psy871 114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LASCPVLILGNKIDKHG 191 (249)
Q Consensus 114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~ 191 (249)
..++++|+|+... .... ..+..+|.+++++..+..+ ......+..+ .... ..+.++.+|+|++|...
T Consensus 76 yD~viiD~~~~~~--~~~~------~~l~~ad~viiv~~~~~~~--~~~~~~~~~l-~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITS------AAVMVSDLVIIPVTPSPLD--FSAAGSVVTV-LEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp SSEEEEECCSSSS--HHHH------HHHHHCSEEEEEECSCTTT--HHHHHHHHHH-HTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCEEEEECCCCCC--HHHH------HHHHHCCEEEEEecCCHHH--HHHHHHHHHH-HHHHHhCCCCcEEEEEeccCCCc
Confidence 4588999997542 2222 2345689999999887765 3343333333 2211 24567899999999543
Q ss_pred CCCHHHHHHHhhh
Q psy871 192 AASEEEIRQYFGL 204 (249)
Q Consensus 192 ~~~~~~~~~~~~~ 204 (249)
. ..+++.+.++.
T Consensus 145 ~-~~~~~~~~l~~ 156 (206)
T 4dzz_A 145 T-MLNVLKESIKD 156 (206)
T ss_dssp E-EEHHHHHHHHH
T ss_pred h-HHHHHHHHHHH
Confidence 2 22344444444
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.55 E-value=3.3e-05 Score=58.08 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+||+|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999998753
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.55 E-value=3.8e-05 Score=56.27 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..++|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999875
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.55 E-value=3.3e-05 Score=57.53 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|++|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999998753
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.53 E-value=3.7e-05 Score=57.83 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+||+|||||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999874
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.50 E-value=5.1e-05 Score=58.13 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.2
Q ss_pred eecceEEEeccCCcchHHHHHHHh
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~ 42 (249)
.+...|+|+|++|||||||++.|.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.50 E-value=2.7e-05 Score=65.51 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..++.+|+++|.+||||||+.++|...
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 355679999999999999999999753
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.50 E-value=4.9e-05 Score=57.84 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=23.4
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhcC
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++.-++ -.++|+|+.|||||||++.|.+-
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3444333 37899999999999999999764
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=5.3e-05 Score=56.49 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcCC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+...|+|+||+|||||||+++|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44579999999999999999998653
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.49 E-value=4.4e-05 Score=55.09 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=18.3
Q ss_pred eEEEeccCCcchHHHHHHHh
Q psy871 23 KLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~ 42 (249)
.++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999864
No 262
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=8.9e-05 Score=53.82 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=27.1
Q ss_pred hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
++.+..++.-+.... ...++++|++|+|||||++++.+.
T Consensus 23 ~~~~~~~~~~~~~~~-g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 23 LLTIRVFVHNFNPEE-GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHSCCGGG-CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 334444444444333 457899999999999999999753
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.48 E-value=5.6e-05 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=21.1
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++++|+.|||||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999999998754
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.47 E-value=5.6e-05 Score=57.09 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=23.3
Q ss_pred cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++.-++- .++|+|+.|||||||++.+.+-
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34443333 6889999999999999999864
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.47 E-value=5.9e-05 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998754
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.45 E-value=5.8e-05 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.3
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...|+|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=5.8e-05 Score=54.35 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.44 E-value=6.7e-05 Score=57.26 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999875
No 269
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.42 E-value=6.5e-05 Score=59.63 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...|+|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4556899999999999999999986
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.41 E-value=7.2e-05 Score=56.97 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999764
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.41 E-value=6.9e-05 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999874
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.40 E-value=7.4e-05 Score=60.23 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcCC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.-.++++|++|||||||+|.|.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3479999999999999999998753
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.39 E-value=7.8e-05 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.|.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998753
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.39 E-value=7.8e-05 Score=58.05 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=24.3
Q ss_pred cccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 13 GYLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 13 ~~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
.-+++.-++- .++|+|+.|||||||++.|.+-
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3334443443 6899999999999999999874
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.39 E-value=8.8e-05 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|.|++||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999964
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.39 E-value=8.3e-05 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.7
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+|+|++|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 277
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.38 E-value=8.2e-05 Score=57.03 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.5
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999875
No 278
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.38 E-value=3.9e-05 Score=60.63 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.-.++++|++|||||||+|+|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999999754
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.38 E-value=8.3e-05 Score=57.65 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999999874
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.38 E-value=8.2e-05 Score=57.55 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=23.4
Q ss_pred cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++.-++- .++|+|+.|||||||++.|.+-
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34443333 6899999999999999999874
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.37 E-value=6.8e-05 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=21.0
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.37 E-value=8.5e-05 Score=56.26 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
No 283
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.37 E-value=8.4e-05 Score=57.34 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.0
Q ss_pred ccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 14 YLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 14 ~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
-+++.-++- .++|+|+.|||||||++.+.+-
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344443333 7899999999999999999874
No 284
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.37 E-value=8.8e-05 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...|+|+|++||||||+.++|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999753
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.37 E-value=8.2e-05 Score=58.68 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.2
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
-.++|+|++|||||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3789999999999999999985
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=0.0001 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|++.|++||||||+.++|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 287
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.36 E-value=9.1e-05 Score=57.29 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 7899999999999999999874
No 288
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=8.9e-05 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.1
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++++|++|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999864
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.35 E-value=8.7e-05 Score=54.30 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.35 E-value=9.5e-05 Score=56.42 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++.-++- .++|+|+.|||||||++.|.+-
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33443333 7899999999999999999874
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.35 E-value=9.5e-05 Score=56.96 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=23.1
Q ss_pred ccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 16 GLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 16 ~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
++.-++- .++|+|+.|||||||++.|++-
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3443333 7899999999999999999875
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.34 E-value=9.7e-05 Score=57.07 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.5
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999874
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00011 Score=52.89 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=18.9
Q ss_pred ceEEEeccCCcchHHHHHHH
Q psy871 22 GKLLFLGLDNAGKTTLLHML 41 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l 41 (249)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.34 E-value=9.9e-05 Score=56.61 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=24.9
Q ss_pred hcccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 12 LGYLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 12 ~~~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
+.-+++.-++- .++|+|+.|||||||++.|.+-
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33444443343 6899999999999999999764
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.0001 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
|++..|++.|++||||||+.+.|..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.33 E-value=9.3e-05 Score=53.41 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=20.1
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.33 E-value=0.0001 Score=57.30 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.9
Q ss_pred ccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 14 YLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 14 ~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
-+++.-++- .++|+|+.|||||||++.|.+-
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 334443333 7899999999999999999875
No 298
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.32 E-value=0.00011 Score=56.47 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00011 Score=54.26 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=20.6
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhc
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~ 43 (249)
+++.+++ ..|+++|++||||||+.+.|..
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3444444 3899999999999999999974
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.32 E-value=0.00011 Score=57.45 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=23.5
Q ss_pred cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++.-++- .++|+|+.|||||||++.|++-
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34443333 7899999999999999999874
No 301
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.30 E-value=7.9e-05 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.0
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..++|+|++|||||||++.|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=0.00012 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.580 Sum_probs=20.6
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+|+|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999965
No 303
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.30 E-value=0.00012 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.6
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.30 E-value=0.00013 Score=52.31 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.29 E-value=0.00012 Score=56.35 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00012 Score=54.11 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.1
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|+|++||||||+.+.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999965
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.28 E-value=0.00012 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.-.++|+|+.|||||||++.|.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 334799999999999999999976
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.28 E-value=0.00012 Score=56.66 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=23.9
Q ss_pred ccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871 14 YLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 14 ~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~ 44 (249)
-+++.-++- .++|+|+.|||||||++.|.+-
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 334443333 7889999999999999999874
No 309
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.28 E-value=0.00013 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=21.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
|+...|++.|++||||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.28 E-value=0.00012 Score=57.89 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...++++|++|||||||+|+|.+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 457899999999999999999764
No 311
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00013 Score=56.37 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.1
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.|.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998754
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00014 Score=54.85 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.4
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.26 E-value=0.00011 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 37999999999999999999764
No 314
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.26 E-value=0.00014 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.1
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|++.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.26 E-value=0.00014 Score=53.85 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=20.0
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|+|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999987
No 316
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.26 E-value=0.00015 Score=52.38 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.1
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...++++|++|||||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 457899999999999999999753
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.26 E-value=0.00016 Score=53.49 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=23.4
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhc
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
....++..|+|+|++||||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456667899999999999999999964
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.25 E-value=0.00021 Score=56.75 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=22.6
Q ss_pred ceecceEEEeccCCcchHHHHHHHhc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
..++..|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35566899999999999999999865
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.22 E-value=0.00016 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.5
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.22 E-value=0.00016 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.3
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 321
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.22 E-value=0.00015 Score=56.55 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=23.9
Q ss_pred cccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.-+|+..+.- ++++||+|+|||||++++.+.
T Consensus 37 ~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 37 KALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3344444433 999999999999999999863
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.22 E-value=0.00012 Score=55.54 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=17.6
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHh-cC
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLK-DD 44 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~-~~ 44 (249)
.++.-++ ..++|+|++|||||||++.|. +.
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3444333 368999999999999999998 64
No 323
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.21 E-value=0.00016 Score=55.31 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.4
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.20 E-value=0.00019 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+..+|+|+|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.20 E-value=0.00018 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.1
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+++|++||||||+.++|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 456799999999999999999973
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00017 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 327
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00018 Score=53.13 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=23.4
Q ss_pred cceecceEEEeccCCcchHHHHHHHhcC
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+.++...|+|+|++||||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4566778999999999999999999764
No 328
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.19 E-value=0.00017 Score=56.96 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred cceEEEeccCCcchHHHHHHHh
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~ 42 (249)
...++++|++|||||||+|+|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999997
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.18 E-value=0.00019 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.6
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...|+|+|++||||||+.+.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.00018 Score=57.98 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+||+|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999998754
No 331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.18 E-value=0.00026 Score=55.55 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
++...|++.|+|||||||+.++|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999975
No 332
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.0002 Score=53.49 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999954
No 333
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00023 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
-..++++|++|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 334
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.16 E-value=0.00019 Score=56.27 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||++.|.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999999874
No 335
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.16 E-value=0.00023 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.6
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+++|++||||||+.++|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.15 E-value=0.00019 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+--.++|+|++|||||||++.|++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33447899999999999999999863
No 337
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.15 E-value=0.00023 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
No 338
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00022 Score=53.28 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|+|+|++||||||+.++|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.14 E-value=0.00017 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=17.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
++...|++.|++||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.14 E-value=0.00021 Score=57.56 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=24.8
Q ss_pred ccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 14 YLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 14 ~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-+++.-++ -.++|+|+.|||||||++.|.+-.
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444334 378999999999999999998754
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00021 Score=54.55 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.++.+|+|+|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667999999999999999999964
No 342
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.14 E-value=0.0002 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred eecceEEEeccCCcchHHHHHHHh
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~ 42 (249)
.+--.++|+|++|||||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 344478999999999999999987
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.13 E-value=0.00023 Score=52.53 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.13 E-value=0.00019 Score=58.28 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.2
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-+++|+|++|||||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.13 E-value=0.00022 Score=57.56 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=24.0
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+++.-++ -.++|+|+.|||||||++.+.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3444333 368999999999999999999754
No 346
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.12 E-value=0.00023 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68999999999999999998753
No 347
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.12 E-value=0.00023 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.3
Q ss_pred eecceEEEeccCCcchHHHHHHHh
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~ 42 (249)
++...|+|+|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 344689999999999999999997
No 348
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.12 E-value=0.00025 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00026 Score=52.60 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=21.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|.|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 350
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.00024 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|+|||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.10 E-value=0.00027 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00018 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...++++|++|+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999999763
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.10 E-value=0.00025 Score=57.67 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.1
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999754
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.10 E-value=0.00024 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=21.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...|+|+|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999975
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.09 E-value=0.00025 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+++|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
No 356
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.09 E-value=0.00022 Score=57.40 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=24.3
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+++.-++ -.++|+|+.|+|||||++.+.+-.
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4444333 378999999999999999998754
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00026 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.09 E-value=0.00024 Score=56.36 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+...|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34458999999999999999999863
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.09 E-value=0.00025 Score=57.51 Aligned_cols=31 Identities=39% Similarity=0.460 Sum_probs=24.1
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+++.-++ -.++|+|+.|||||||++.+.+-.
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3444333 378999999999999999999754
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.09 E-value=0.00026 Score=57.55 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=24.1
Q ss_pred cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
+++.-++ -.++|+|+.|+|||||++.+.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3444333 368999999999999999998754
No 361
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.08 E-value=0.00025 Score=55.67 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=22.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
..+...|+|+|++|||||||.+.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999999874
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.07 E-value=0.0003 Score=53.10 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 363
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.05 E-value=0.00026 Score=56.62 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=24.7
Q ss_pred hcccccce-ecceEEEeccCCcchHHHHHHHhcC
Q psy871 12 LGYLGLWT-KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 12 ~~~~~~~~-~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+..+++.- +.-.++|+|+.|||||||++.|.+.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33444442 2338999999999999999999864
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.0003 Score=51.28 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
++...|+++|++||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4556899999999999999999964
No 365
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00028 Score=56.99 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.3
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
-.++|+|+.|||||||++++.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999975
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00031 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
++...|+++|++||||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999965
No 367
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.03 E-value=0.00021 Score=57.64 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=25.1
Q ss_pred cccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871 13 GYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 13 ~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.-+++.-++ -.++|+|+.|||||||++.+.+-.
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334444333 378999999999999999998754
No 368
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.03 E-value=0.00029 Score=54.06 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEeccCCcchHHHHHHHhcC
Q psy871 24 LLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~ 44 (249)
++++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.02 E-value=0.00029 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++|+|+.|||||||++.|.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999874
No 370
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.02 E-value=0.00036 Score=52.78 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+++..|+|.|++||||||+.+.|..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999963
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.01 E-value=0.00035 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 372
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.01 E-value=0.00038 Score=51.75 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+|+++|||||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.99 E-value=0.00035 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|++|+|||||++.|.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 7899999999999999999874
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.00033 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999964
No 375
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.00038 Score=50.19 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00041 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
No 377
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.97 E-value=0.00036 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.5
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..+++.||||+||||+..+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 378
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.96 E-value=0.00038 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.5
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+|+|+|||||+|...+|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999975
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.95 E-value=0.00045 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=22.2
Q ss_pred cceecceEEEeccCCcchHHHHHHHhc
Q psy871 17 LWTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 17 ~~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...+...|+++|++||||||+.++|..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445567899999999999999999964
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.95 E-value=0.00026 Score=52.69 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.3
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 381
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00038 Score=56.65 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.2
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
-.++|+|++|||||||++.|.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999976
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.00039 Score=54.15 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEeccCCcchHHHHHHHhcC
Q psy871 24 LLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~ 44 (249)
++++|++|+|||||++++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 383
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.93 E-value=0.00032 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.5
Q ss_pred ceecceEEEeccCCcchHHHHHHHhc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+++..|+++|+|||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999999975
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.93 E-value=0.00049 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.93 E-value=0.00044 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 386
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.00042 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.4
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999964
No 387
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.92 E-value=0.00056 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.4
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..+++.|++|+|||||+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 388
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.89 E-value=0.0005 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 389
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.00057 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|++.|++||||||+.++|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.87 E-value=0.00058 Score=49.88 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.4
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 391
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.86 E-value=0.00056 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+-+..|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999975
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.86 E-value=0.00056 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.6
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
..+|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.86 E-value=0.00047 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+.-.++|+|+.|||||||++++.+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3347899999999999999999763
No 394
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00046 Score=57.71 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+-.+++|+|+.|||||||++.|++-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3458999999999999999999874
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.85 E-value=0.00053 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.-.++++|+.||||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44899999999999999999976
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.85 E-value=0.00059 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.0
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 397
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.84 E-value=0.015 Score=43.03 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=46.4
Q ss_pred ceEEEEEeCCCc-hhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871 113 DAIVFLVDTSDR-ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191 (249)
Q Consensus 113 ~~~~~v~D~~g~-~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 191 (249)
...++++|+|+. ... ... ..+..+|.+++++..+.. +...+...+..+... .+.++.+|+|++|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~------~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLE------ALADGCDLLVIPSTPDAL-ALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHH------HHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHH------HHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 345889999875 322 111 234578999999887653 333333333333221 2567889999998654
Q ss_pred CCCHHHHHHHhhh
Q psy871 192 AASEEEIRQYFGL 204 (249)
Q Consensus 192 ~~~~~~~~~~~~~ 204 (249)
....+++.+.++.
T Consensus 135 ~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 135 SKDGDEARQLLTT 147 (209)
T ss_dssp SCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 1123455555554
No 398
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.84 E-value=0.00048 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...|+|.|+.|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4458999999999999999999764
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.84 E-value=0.00052 Score=58.18 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.3
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+|+.|||||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999864
No 400
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.83 E-value=0.00058 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...|++.|+|||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.83 E-value=0.00059 Score=52.35 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 402
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.82 E-value=0.00064 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.3
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.81 E-value=0.00064 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 404
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.81 E-value=0.011 Score=49.09 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=20.8
Q ss_pred ceecceEEEeccCCcchHHHHHHHh
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~ 42 (249)
..+-..|+|+|+.++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3455688899999999999999654
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00053 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.9
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
..+|+|+|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 406
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.78 E-value=0.0012 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.2
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
....+++.|++|+|||+|++++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998653
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.78 E-value=0.00062 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...|+|+|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999973
No 408
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.78 E-value=0.00071 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.3
Q ss_pred ceecceEEEeccCCcchHHHHHHHhc
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.+..+|+|+|++||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999999975
No 409
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.76 E-value=0.00063 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.8
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..++++||+|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999864
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.75 E-value=0.00078 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|++.|++||||||++++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 411
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.73 E-value=0.0007 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.2
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|+|++|||||||.++|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999974
No 412
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.73 E-value=0.00092 Score=52.47 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.2
Q ss_pred ccceecceEEEeccCCcchHHHHHHHhcC
Q psy871 16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...+...+++.|+||+|||||++++...
T Consensus 49 ~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 49 GLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34455678999999999999999999763
No 413
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.72 E-value=0.00074 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-+++|+|+.|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999875
No 414
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.71 E-value=0.00087 Score=50.39 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+--.++|+|++|+|||||+..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344789999999999999999974
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.00083 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+-..+|+|+.|+|||||+++|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999875
No 416
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.69 E-value=0.00094 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=20.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+-+.+++|+|+|||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999965
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.69 E-value=0.00076 Score=53.01 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.8
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
--.++|+|++|+|||||+..+++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 337899999999999999999764
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.68 E-value=0.00084 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+++|++||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 419
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.68 E-value=0.00091 Score=49.45 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=19.7
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
No 420
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.68 E-value=0.00045 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999975
No 421
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0011 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+..++++|++|+|||||++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 422
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.66 E-value=0.00083 Score=56.28 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=20.5
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
-.++|+|+.|||||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6789999999999999999986
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.66 E-value=0.00087 Score=57.27 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999854
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.65 E-value=0.00086 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+.-.++++|+.||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 344899999999999999999975
No 425
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.63 E-value=0.0057 Score=48.23 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=39.8
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE-EEEecCCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL-ILGNKIDK 189 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl 189 (249)
...++++|+|+........ ..+..+|.+++|...+.. +...+...+..+.......+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~~~-------~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFA-------APLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGGGG-------GGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHHHH-------HHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 3568899998743222111 234678999999876543 344444344443322122456655 89999983
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.62 E-value=0.00091 Score=54.40 Aligned_cols=22 Identities=41% Similarity=0.450 Sum_probs=20.2
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..++++|++|+|||||++.|.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4889999999999999999975
No 427
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.62 E-value=0.00097 Score=53.99 Aligned_cols=59 Identities=25% Similarity=0.568 Sum_probs=32.9
Q ss_pred CcccceeceeccccccceEEEEEeCCC----------chhhhhhHHHHhhhhcccccc-ceEEEEEECCC
Q psy871 97 TLHPTRRVWKDYFPAVDAIVFLVDTSD----------RERFEESKSELQCLLTDESLA-SSIVFLVDTSD 155 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g----------~~~~~~~~~~~~~~~~~~~~~-d~ii~v~d~~~ 155 (249)
|....+..|..++++.++.++++|.++ ..++.....++......-... -.++++..-.|
T Consensus 210 Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 210 GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp C-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred chhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 444456677788889999999999998 456666666555544432112 23455555444
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.61 E-value=0.00094 Score=57.70 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++++|+.|||||||++.|.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7999999999999999999874
No 429
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.59 E-value=0.0012 Score=47.12 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.5
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
No 430
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.0012 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=21.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+--.++|+|++|+|||||+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999976
No 431
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0011 Score=57.39 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.|.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 379999999999999999999854
No 432
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.56 E-value=0.0011 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.5
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++|+|++|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 8999999999999999999874
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.56 E-value=0.0012 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
|++..|+|+|++||||||+.+.|..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999965
No 434
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.0011 Score=56.57 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999998854
No 435
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.55 E-value=0.0011 Score=57.34 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++++|+.|||||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998753
No 436
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.54 E-value=0.0013 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+...+++.|++|+|||||++++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999865
No 437
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.53 E-value=0.0015 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++++|+.|||||||++.|.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999764
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.0012 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
....++|.|++|+|||+|++++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999998753
No 439
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.52 E-value=0.031 Score=42.95 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
...++++|+|..... ... ..+..+|.+++++..+.. +...+...+..+ ... ..+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~~--~~~------~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l-~~~-~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--TLK------NALLCSDYVIIPMTAEKW-AVESLDLFNFFV-RKL-NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCSH--HHH------HHHTTCSEEEEEEESCTT-HHHHHHHHHHHH-HTT-TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCccH--HHH------HHHHHCCeEEEEeCCChH-HHHHHHHHHHHH-HHH-hccCCEEEEEeccc
Confidence 345889999874321 122 234569999999988653 334343333333 222 23567889999994
No 440
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.51 E-value=0.0012 Score=57.18 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 378999999999999999998754
No 441
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.51 E-value=0.00095 Score=57.84 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++++|+.|||||||++.|.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999875
No 442
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0014 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+--.++|+|++|+|||||+..++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44457899999999999999999864
No 443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.48 E-value=0.0011 Score=57.52 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++++|+.|||||||++.|.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 38999999999999999999764
No 444
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.48 E-value=0.00029 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|+||.|||||||++++++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999999864
No 445
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.0022 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+..+|+++|++|+||||+...|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998875
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.47 E-value=0.0014 Score=45.99 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.5
Q ss_pred cceEEEeccCCcchHHHHHHHh
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~ 42 (249)
+.-.+|+|+.|+||||++.++.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999986
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.46 E-value=0.0014 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.2
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|++.|+|||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0014 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=21.0
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 449
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.45 E-value=0.0016 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
|+...|+|+||+|||||||..+|...
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence 34567899999999999999999854
No 450
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.44 E-value=0.00091 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
-.++++|+.|||||||++.|.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 37899999999999999999764
No 451
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.41 E-value=0.0022 Score=50.32 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=21.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..+.-+++.||||+|||+|.+++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456777799999999999999753
No 452
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0024 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+...++|.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999975
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.40 E-value=0.0016 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.|.+..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999854
No 454
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.37 E-value=0.0017 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.6
Q ss_pred ceEEEeccCCcchHHHHHHHhcCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~ 45 (249)
-.++|+|+.|||||||++.|.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 455
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.36 E-value=0.0021 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+..++|.|++|+|||||++.+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.32 E-value=0.0022 Score=48.61 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=21.9
Q ss_pred cccceecceEEEeccCCcchHHHHHHHhc
Q psy871 15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
-+-.|+..-|++.|++||||||+++.|..
T Consensus 21 ~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 21 QSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -----CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34446778899999999999999999864
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.32 E-value=0.0019 Score=53.33 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.0
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
++..|+++|+|||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999964
No 458
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.31 E-value=0.02 Score=43.84 Aligned_cols=71 Identities=14% Similarity=0.007 Sum_probs=41.1
Q ss_pred cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHHhccCCCCCcEE-EEEecCC
Q psy871 112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLLTDESLASCPVL-ILGNKID 188 (249)
Q Consensus 112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D 188 (249)
.+..++++|+|+..... .. ..+..+|.+++++..+... ....+.+.+..+... ...+.+++ +|.|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~------~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TL------NALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HH------HHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HH------HHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeEC
Confidence 34568999999753221 11 2234689999999887642 222222333333221 12456764 8999998
Q ss_pred CCC
Q psy871 189 KHG 191 (249)
Q Consensus 189 l~~ 191 (249)
...
T Consensus 181 ~~~ 183 (257)
T 1wcv_1 181 GRT 183 (257)
T ss_dssp TTC
T ss_pred CCc
Confidence 644
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.0026 Score=51.17 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEeccCCcchHHHHHHHhc
Q psy871 24 LLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~ 43 (249)
+++.|++|+||||+++++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999977
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.29 E-value=0.0019 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.0
Q ss_pred ceEEEeccCCcchHHHHHHHh
Q psy871 22 GKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~ 42 (249)
.-.+|+|+.|||||||+++++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357799999999999999987
No 461
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.002 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.8
Q ss_pred eEEEeccCCcchHHHHHHHhcCC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDDR 45 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~~ 45 (249)
.++|+|+.|||||||++.|.+..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998854
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0026 Score=47.16 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.3
Q ss_pred eEEEeccCCcchHHHHHHHhc
Q psy871 23 KLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~ 43 (249)
.+++.|++|+|||+|++++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999865
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.23 E-value=0.0033 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.1
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.....++|.|++|+|||||++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999975
No 464
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.0025 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
....+++.|+||+|||+|++++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4557999999999999999999753
No 465
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.21 E-value=0.0036 Score=43.50 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.....|++.|++|+|||++.+++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34557999999999999999999753
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.20 E-value=0.0027 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.+--.++|+|++|+|||||+..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3556899999999999999999886
No 467
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.20 E-value=0.0027 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
-.|++.||||+|||+|..+|..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999975
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.20 E-value=0.0019 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.6
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
+...++|+|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4457999999999999999999753
No 469
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.20 E-value=0.005 Score=46.80 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=38.4
Q ss_pred ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188 (249)
Q Consensus 113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 188 (249)
...++++|+|..-.. ... ..+..+|.++++++.+.. +...+.... ++.... ....+.+|+||.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~------~~l~~aD~viiv~~~~~~-s~~~~~~~~-~~~~~~--~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTR------GTAKAVDMMIAVIEPNLN-SIKTGLNIE-KLAGDL--GIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCH------HHHTTCSEEEEEECSSHH-HHHHHHHHH-HHHHHH--TCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHH------HHHHHCCEEEEecCCCHH-HHHHHHHHH-HHHHHc--CCccEEEEEeCCC
Confidence 456889999874322 111 234678999999988653 344433222 233332 2255789999998
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.17 E-value=0.0018 Score=49.98 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=21.9
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+...|+|.|.+||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45568999999999999999999753
No 471
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.16 E-value=0.0028 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
....+++.|+||+|||++++++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.13 E-value=0.003 Score=47.10 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
|+..-|++.|++||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5667899999999999999999864
No 473
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.11 E-value=0.003 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.5
Q ss_pred ecceEEEeccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
....+++.|+||+|||+|++++...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999999999999999863
No 474
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0028 Score=50.22 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.4
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
..+...+.|.|+||+|||++++.++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999999999753
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0031 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=20.9
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...|+|+|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999753
No 476
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.11 E-value=0.0021 Score=58.34 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.7
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
+++|+|+.|||||||++.|++.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999875
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.10 E-value=0.003 Score=57.39 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.1
Q ss_pred ceEEEeccCCcchHHHHHHHhcCCC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDDRL 46 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~~~ 46 (249)
-.++|+|+.|||||||++.|.++.+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3789999999999999999997654
No 478
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.08 E-value=0.0033 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.3
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
....+++.|+||+|||++.+++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999987764
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.0032 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred cceEEEeccCCcchHHHHHHHhcC
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
...|++.|.+||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 480
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.07 E-value=0.0035 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.361 Sum_probs=22.5
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+..-+++.|+||+|||+|.+++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 44568999999999999999999864
No 481
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.07 E-value=0.0033 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.1
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
-++++|++|+|||||++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 482
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.06 E-value=0.0032 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=20.1
Q ss_pred eEEEeccCCcchHHHHHHHhcC
Q psy871 23 KLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 23 ~i~vvG~~~~GKStll~~l~~~ 44 (249)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999753
No 483
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.05 E-value=0.0029 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...+++.|++|+|||||++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999975
No 484
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.02 E-value=0.0049 Score=49.36 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEeccCCcchHHHHHHHhcC
Q psy871 24 LLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 24 i~vvG~~~~GKStll~~l~~~ 44 (249)
+++.||+|+||||+++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
No 485
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.98 E-value=0.0041 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.7
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+--.++|+|++|+|||||+..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999877754
No 486
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.98 E-value=0.0033 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.0
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.+--.+.|+|++|+|||||+..++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999999864
No 487
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.0039 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999985
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.96 E-value=0.0043 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.2
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.....+++.|+||+|||+|.+++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999753
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.95 E-value=0.0036 Score=47.14 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=18.7
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
++..-|++.|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999964
No 490
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.94 E-value=0.0045 Score=50.00 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.2
Q ss_pred ceecceEEEeccCCcchHHHHHHHhcC
Q psy871 18 WTKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 18 ~~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
......+++.|++|+|||+|++++...
T Consensus 114 ~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 114 RGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999999753
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.94 E-value=0.0062 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.9
Q ss_pred cceEEEeccCCcchHHHHHHHhc
Q psy871 21 SGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 21 ~~~i~vvG~~~~GKStll~~l~~ 43 (249)
...+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999965
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.0047 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.8
Q ss_pred eecceEEEeccCCcchHHHHHHHhc
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
.....++|.|++|+|||||++.+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999975
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.90 E-value=0.004 Score=48.19 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.3
Q ss_pred eecceEEEeccCCcchHHHHHHHhcC
Q psy871 19 TKSGKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 19 ~~~~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.....+++.|++|+|||+|..++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999999763
No 494
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.89 E-value=0.0041 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.-++++|+||+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999863
No 495
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.86 E-value=0.0041 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.4
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
....+++.|+||+|||++++++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.0044 Score=49.47 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred ceEEEeccCCcchHHHHHHHhc
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~ 43 (249)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999999885
No 497
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.85 E-value=0.0022 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.3
Q ss_pred ceEEEeccCCcchHHHHHHHhcC
Q psy871 22 GKLLFLGLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~~~ 44 (249)
.-+++.|+||+|||+|++++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999863
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.82 E-value=0.0055 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=17.5
Q ss_pred ceEEEeccCCcchHHHHHHHh
Q psy871 22 GKLLFLGLDNAGKTTLLHMLK 42 (249)
Q Consensus 22 ~~i~vvG~~~~GKStll~~l~ 42 (249)
..++++|++|+||||++-++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999986554
No 499
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.82 E-value=0.0054 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred ecceEEEeccCCcchHHHHHHHhc
Q psy871 20 KSGKLLFLGLDNAGKTTLLHMLKD 43 (249)
Q Consensus 20 ~~~~i~vvG~~~~GKStll~~l~~ 43 (249)
+..-|++-|++||||||+++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 500
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.19 Score=37.59 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=19.5
Q ss_pred ecceEEEe--ccCCcchHHHHHHHhcC
Q psy871 20 KSGKLLFL--GLDNAGKTTLLHMLKDD 44 (249)
Q Consensus 20 ~~~~i~vv--G~~~~GKStll~~l~~~ 44 (249)
++=||+|+ |+++.|||+|+++|.+.
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhcc
Confidence 34456666 99999999999999764
Done!