RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy871
(249 letters)
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 204 bits (520), Expect = 1e-66
Identities = 116/246 (47%), Positives = 142/246 (57%), Gaps = 55/246 (22%)
Query: 4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
I+ F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP L
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--- 64
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
+ F D G RRVWK+Y PA++ IVFLVD +D
Sbjct: 65 -TIAGMTFTTFDLGGHIQA-------------------RRVWKNYLPAINGIVFLVDCAD 104
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
ER ESK EL L+TDE++A+ P+LIL
Sbjct: 105 HERLLESKEELDSLMTDETIAN--------------------------------VPILIL 132
Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
GNKID+ A SEE +R+ FGLYG TTGK + E++ RP+E+FMCSVL RQGYG+GFRW
Sbjct: 133 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 192
Query: 244 LANYID 249
+A YID
Sbjct: 193 MAQYID 198
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 197 bits (502), Expect = 5e-64
Identities = 101/248 (40%), Positives = 120/248 (48%), Gaps = 60/248 (24%)
Query: 1 MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL 60
+ I+ WF VL LGLW K GKLLFLGLDNAGKTTLLHMLK+DRLA PT HP L
Sbjct: 3 GWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL 62
Query: 61 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVD 120
G + F D G RR+WKDYFP V+ IVFLVD
Sbjct: 63 ----AIGNIKFTTFDLGGHIQA-------------------RRLWKDYFPEVNGIVFLVD 99
Query: 121 TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180
+D ERF+E++ EL L L P
Sbjct: 100 AADPERFDEARVELDALFNIAELKD--------------------------------VPF 127
Query: 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240
+ILGNKID A SE E+R GL T + RP+E+FMCSV+MR GY +
Sbjct: 128 VILGNKIDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYLEA 182
Query: 241 FRWLANYI 248
F+WL+ YI
Sbjct: 183 FQWLSQYI 190
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 141 bits (358), Expect = 3e-42
Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 67/218 (30%)
Query: 53 LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT----------- 101
L LG L + ++L LGLDNAGKT++L+ L + VPT+
Sbjct: 10 LKQTLGLL-PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68
Query: 102 -----------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
R W+ YF DA++++VD++DR+R +K EL LL ++ L
Sbjct: 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRK----- 123
Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
+LI NK D AASE EI + G+
Sbjct: 124 ---------------------------SLLLIFANKQDLPDAASEAEIAEQLGV------ 150
Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
S + R + S G +G WL +
Sbjct: 151 ------SSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 136 bits (345), Expect = 2e-40
Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 66/218 (30%)
Query: 53 LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-------------- 98
H G + ++ K++ +GLDNAGKTT+L+ + + PT+
Sbjct: 8 HHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRF 67
Query: 99 --------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
R W Y+ + ++ +VD++DR
Sbjct: 68 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR-------------------------- 101
Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
ER ++ EL +L E L +LI NK D + EI Q+ L
Sbjct: 102 ------ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL------ 149
Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ + + C L +G G W+ + +
Sbjct: 150 ------TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 135 bits (343), Expect = 4e-40
Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 66/220 (30%)
Query: 53 LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK--DDRLAQPVPTL------------ 98
H G + +K +L LGLDN+GKTT+++ LK + + +PT+
Sbjct: 8 HHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSL 67
Query: 99 ----------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIV 148
R +W+ Y+ AI+F++D+SDR R +K EL LL +
Sbjct: 68 SFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR-- 125
Query: 149 FLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLT 208
P+L NK+D A + ++ Q L
Sbjct: 126 ----------------------------RIPILFFANKMDLRDAVTSVKVSQLLCL---- 153
Query: 209 TGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ +P + + +G +G WL + I
Sbjct: 154 --------ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 133 bits (338), Expect = 1e-39
Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 66/209 (31%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------H 99
T+ ++L LGLD AGKTT+L+ L+ + +PT+
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62
Query: 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF 159
R W+ Y+ DA++++VD+ DR+R SKSEL +L +E L
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK-------------- 108
Query: 160 EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM 219
+++ NK D A + E+ GL +
Sbjct: 109 ------------------AILVVFANKQDMEQAMTSSEMANSLGL------------PAL 138
Query: 220 SGRPIELFMCSVLMRQGYGDGFRWLANYI 248
R ++F S G + WL +
Sbjct: 139 KDRKWQIFKTSATKGTGLDEAMEWLVETL 167
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 131 bits (331), Expect = 2e-38
Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 66/219 (30%)
Query: 52 TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL------------- 98
+ L K ++L LGLD AGKTT+L+ L+ + PT+
Sbjct: 4 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLK 63
Query: 99 ---------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVF 149
R W+ Y+ A++F+VD++D+
Sbjct: 64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK------------------------- 98
Query: 150 LVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTT 209
+R + EL +L +E L +L+ NK D+ GA S E+ + L
Sbjct: 99 -------DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNL----- 146
Query: 210 GKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
E+ R + S + +G +G WL + I
Sbjct: 147 -------VELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 126 bits (319), Expect = 1e-36
Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 66/209 (31%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------H 99
+ K++ +GLDNAGKTT+L+ + + PT+
Sbjct: 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 71
Query: 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF 159
R W Y+ + ++ +VD++DR ER
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDR--------------------------------ERI 99
Query: 160 EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM 219
++ EL +L E L +LI NK D + EI Q+ L + +
Sbjct: 100 SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL------------TSI 147
Query: 220 SGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ C L +G G W+ + +
Sbjct: 148 KDHQWHIQACCALTGEGLCQGLEWMMSRL 176
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 126 bits (318), Expect = 2e-36
Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 66/218 (30%)
Query: 53 LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-------------- 98
L + + ++L LGLDNAGKTTLL L + ++ PT
Sbjct: 3 LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62
Query: 99 --------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
R W+ YF D +++++D++DR
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR-------------------------- 96
Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
+RFEE+ EL LL +E L+ PVLI NK D AA EI + L
Sbjct: 97 ------KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL------ 144
Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ R ++ CS L +G DG W+ +
Sbjct: 145 ------HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 118 bits (299), Expect = 7e-34
Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 66/203 (32%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
++L +GLD AGKTT+L+ LK + +PT+ R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
+ YF ++F+VD++DR ER E++ E
Sbjct: 62 RHYFQNTQGLIFVVDSNDR--------------------------------ERVNEAREE 89
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
L +L ++ L +L+ NK D A + EI GL + R
Sbjct: 90 LMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL------------HSLRHRNWY 137
Query: 226 LFMCSVLMRQGYGDGFRWLANYI 248
+ G +G WL+N +
Sbjct: 138 IQATCATSGDGLYEGLDWLSNQL 160
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 118 bits (297), Expect = 3e-33
Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 66/215 (30%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------- 98
IL + + +LL LGLDNAGKTT+L + + PTL
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIW 67
Query: 99 -----HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
R W++YF + D ++++VD++DR
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------------------------- 98
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
+R ++ + ELQ LL +E LA +LI NK D GA S I++ L
Sbjct: 99 ---QRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL--------- 146
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ + CS + + G WL + I
Sbjct: 147 ---DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 118 bits (297), Expect = 4e-33
Identities = 51/218 (23%), Positives = 76/218 (34%), Gaps = 77/218 (35%)
Query: 61 GLWTKSGK----LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT--------------- 101
GL + K L +GL +GKTT ++++ Q + PT
Sbjct: 13 GLVPRGSKEEMELTLVGLQYSGKTTFVNVIA---SGQFNEDMIPTVGFNMRKITKGNVTI 69
Query: 102 -----------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
R +W+ Y V AIV++VD +D+
Sbjct: 70 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ-------------------------- 103
Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
E+ E SK+EL LL L PVL+LGNK D GA E+E+ + L
Sbjct: 104 ------EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL------ 151
Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
S + R I + S + +WL +
Sbjct: 152 ------SAIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 117 bits (295), Expect = 6e-33
Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 66/208 (31%)
Query: 63 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HP 100
K ++L +GLD AGKTT+L+ LK + +PT+
Sbjct: 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDK 85
Query: 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFE 160
R +W+ YF ++F+VD++DR ER +
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDR--------------------------------ERVQ 113
Query: 161 ESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220
ES ELQ +L ++ L +L+ NK D A E+ GL +
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGL------------QHLR 161
Query: 221 GRPIELFMCSVLMRQGYGDGFRWLANYI 248
R + G DG WL++ +
Sbjct: 162 SRTWYVQATCATQGTGLYDGLDWLSHEL 189
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 111 bits (279), Expect = 2e-30
Identities = 36/212 (16%), Positives = 60/212 (28%), Gaps = 63/212 (29%)
Query: 3 QIWDWFTGVLGYLGLWTKSGK-----LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPIL 57
+I W + LG + G ++ G N+GKT+LL +L D + V + P+
Sbjct: 25 KISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS 84
Query: 58 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFP----AVD 113
+D G L R DY V
Sbjct: 85 A-----ADYDGSGVTLVDFPGHVKL-------------------RYKLSDYLKTRAKFVK 120
Query: 114 AIVFLVD-TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172
++F+VD T D ++ + L +L+
Sbjct: 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITES----------------------------- 151
Query: 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
+LI NK + A +I+
Sbjct: 152 SCENGIDILIACNKSELFTARPPSKIKDALES 183
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 111 bits (280), Expect = 2e-30
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 57/170 (33%)
Query: 59 YLGLWTKSGK--LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT--------------- 101
++G+ KS + ++ G N+GKT+LL +L D + V + P
Sbjct: 3 HMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDF 62
Query: 102 ------RRVWKDYFP----AVDAIVFLVD-TSDRERFEESKSELQCLLTDESLASSIVFL 150
R DY V ++F+VD T D ++ + L +L+
Sbjct: 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES------- 115
Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQ 200
+LI NK + A +I+
Sbjct: 116 ----------------------SCENGIDILIACNKSELFTARPPSKIKD 143
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 103 bits (257), Expect = 4e-26
Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 66/223 (29%)
Query: 48 QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL--------- 98
P P K ++L +GLD AGKTT+L+ LK + +PT+
Sbjct: 147 SPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 206
Query: 99 -------------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLAS 145
R +W+ YF ++F+VD++DR
Sbjct: 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR--------------------- 245
Query: 146 SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLY 205
ER E++ EL +L ++ L +L+ NK D A + EI GL
Sbjct: 246 -----------ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL- 293
Query: 206 GLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ R + G +G WL+N +
Sbjct: 294 -----------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 101 bits (253), Expect = 6e-25
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 66/229 (28%)
Query: 42 KDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL--- 98
+ T G GL K ++L LGLD AGKTT+L+ LK + +PT+
Sbjct: 298 SLSSPSALNSTASNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN 357
Query: 99 -------------------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT 139
R +W+ Y+ ++F+VD +DR
Sbjct: 358 VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR--------------- 402
Query: 140 DESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIR 199
+R +E++ EL ++ D + +LI NK D A EI+
Sbjct: 403 -----------------DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 445
Query: 200 QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
+ GL + + R + G +G WL +
Sbjct: 446 EKLGL------------TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 96.7 bits (241), Expect = 1e-24
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
+ +LF+GL ++GKT L L + ++ + ++K + L+D
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK-VNNNRGNSLTLIDLPG 63
Query: 124 RERFEESKSELQCLLTDESLASS--IVFLVDTSDRERF-EESKSELQCLLTDESLA--SC 178
E L+ L D +S+ +VF+VD++ +R ++ L +L D S
Sbjct: 64 HES-------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGL 204
+LI NK D A S + I+Q
Sbjct: 117 SLLIACNKQDIAMAKSAKLIQQQLEK 142
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 89.0 bits (221), Expect = 6e-22
Identities = 33/241 (13%), Positives = 60/241 (24%), Gaps = 53/241 (21%)
Query: 10 GVLGYLGLWTK--SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSG 67
G + + + + K+++ G +GKTT L + + + T
Sbjct: 1 GSMSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATE-DERTLFF 59
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
L L + L VP K VD IVF+ D++
Sbjct: 60 DFLPLDIGEVKGFKTRFHLYT------VPGQVFYNASRKLILRGVDGIVFVADSAPNRLR 113
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
E + L +L P++I NK
Sbjct: 114 AN--------------------------AESMRNMRENLA--EYGLTLDDVPIVIQVNKR 145
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D A E +R + +G + + ++
Sbjct: 146 DLPDALPVEMVRAVVDP----------------EGKFPVLEAVATEGKGVFETLKEVSRL 189
Query: 248 I 248
+
Sbjct: 190 V 190
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 72.7 bits (178), Expect = 6e-16
Identities = 17/134 (12%), Positives = 52/134 (38%), Gaps = 4/134 (2%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV-DTSDRER 126
++L +GL +GK+++ ++ L T +++KD + F + D +
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F + + + + ++++++D D ++ + + + +K
Sbjct: 82 FFDPTFDYEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138
Query: 187 IDKHGAASEEEIRQ 200
+D + E ++
Sbjct: 139 VDGLSDDHKIETQR 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 72.7 bits (178), Expect = 3e-15
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV-DTSDRER 126
KLL +G +GK+++ ++ + A L T V + + + + D ++
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGN 185
F E+ Q + ++ + D E ++ + + L + + +L +
Sbjct: 65 FMENYFTKQKDHIFQM-VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 186 KIDKHGAASEEEIRQ 200
K+D EE+ Q
Sbjct: 124 KMDLVQLDKREELFQ 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 1e-10
Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 53/237 (22%)
Query: 20 KSGKLLFL-GLDNAGKTTL-LHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNA 77
+ K + + G+ +GKT + L + ++ + I W
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIF-----WLNLKNCN------- 193
Query: 78 GKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCL 137
+ + + + L ++ ++ D ++ + R ++EL+ L
Sbjct: 194 ---------SPETVLEMLQKLL--YQIDPNWTSRSDH-----SSNIKLRIHSIQAELRRL 237
Query: 138 LTDESLASSIVFLVDTSDRERFEESKSELQC--LLT--DESLASCPVLILGNKIDKH--- 190
L + + ++ L++ + + + L C LLT + + L H
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTD----FLSAATTTHISL 291
Query: 191 ----GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
+ +E++ Y L PR ++ P L + + +R G W
Sbjct: 292 DHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TW 344
Score = 27.9 bits (61), Expect = 4.4
Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-------S 162
P +I+ ++ K + C + SS+ L R+ F+ +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 163 K--SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGL 207
+ L L+ + + S ++++ NK+ K+ ++ + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPSI 431
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 54.3 bits (130), Expect = 7e-09
Identities = 16/132 (12%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 69 LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
+L +G+ GK+++ ++ + L T ++F + + +++ + +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLA-VMELPGQLNYF 60
Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188
E + + L ++V+++D+ D + + + S + +L +K+D
Sbjct: 61 EPSYDSERLFKS---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
Query: 189 KHGAASEEEIRQ 200
+ + ++
Sbjct: 118 GLSEDFKVDAQR 129
Score = 38.1 bits (88), Expect = 0.002
Identities = 16/154 (10%), Positives = 47/154 (30%), Gaps = 21/154 (13%)
Query: 24 LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLL 83
+L +G+ GK+++ ++ + L ++
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTS----------NPSLEHFSTLIDLAVM 51
Query: 84 HMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD--RERFEESKSELQCLLTDE 141
+ +P + F +V A+V+++D+ D ++
Sbjct: 52 ELPGQLNYFEPSYD-------SERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN 104
Query: 142 SLASSIVFL--VDTSDRERFEESKSELQCLLTDE 173
+ V + VD + +++ ++ +E
Sbjct: 105 PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEE 138
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 49.7 bits (118), Expect = 2e-07
Identities = 13/148 (8%), Positives = 30/148 (20%), Gaps = 43/148 (29%)
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
+ VD +++ + +R E + +
Sbjct: 116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP------------------- 156
Query: 162 SKSELQCLLTDESLASCPVLILG-NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220
+ P+L+L + L L
Sbjct: 157 ----------AFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN------------ 194
Query: 221 GRPIELFMCSVLMRQGYGDGFRWLANYI 248
P + G+ +G W+ +
Sbjct: 195 -HPWLVQDTEAETLTGFLNGIEWILEEV 221
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 45.5 bits (107), Expect = 6e-06
Identities = 13/146 (8%), Positives = 29/146 (19%), Gaps = 43/146 (29%)
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
+ VD +++ + +R E + +
Sbjct: 201 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP------------------- 241
Query: 162 SKSELQCLLTDESLASCPVLILG-NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220
+ P+L+L + L L
Sbjct: 242 ----------AFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN------------ 279
Query: 221 GRPIELFMCSVLMRQGYGDGFRWLAN 246
P + G+ +G W+
Sbjct: 280 -HPWLVQDTEAETLTGFLNGIEWILE 304
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 43.5 bits (102), Expect = 3e-05
Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 13/139 (9%)
Query: 68 KLLFLGLDNAGKTTLLHML----KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
+ G +GK++ ++ L ++ A + T P + +VF D
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW----D 126
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
+ L F++ ++ RF+++ ++ ++ +
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMM---KKEFYFV 181
Query: 184 GNKIDKHGAASEEEIRQYF 202
K+D + Q F
Sbjct: 182 RTKVDSDITNEADGEPQTF 200
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 42.1 bits (99), Expect = 7e-05
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 69 LLFLGLDNAGKTTLLHML---KDDRLAQPVPTLHPTRRVWK-DYFPAVDAIVFLVDTS-- 122
++ G N GK+TLL L K + + P T ++ YF ++DT
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQ-----IIDTPGL 224
Query: 123 -DRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE---SLASC 178
DR E ++ E Q +L L + I+++ D S+ F E Q L +E
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPL---EEQIHLFEEVHGEFKDL 281
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLT 208
P L++ NKID + + + ++ GL
Sbjct: 282 PFLVVINKIDVADEENIKRLEKFVKEKGLN 311
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 40.4 bits (95), Expect = 2e-04
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 23/148 (15%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH------PTRRVWKDYFPAVDAIVFLV-D 120
KL+ +G +GKTTLL L + + + D +V V D
Sbjct: 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRD-LVLNVWD 62
Query: 121 TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD-ESLAS-C 178
+ RE F S +T + + + D S + ++ ++ L + ++ AS
Sbjct: 63 FAGREEF---YSTHPHFMTQ---RALYLAVYDLSKGQAEVDA---MKPWLFNIKARASSS 113
Query: 179 PVLILGNKID----KHGAASEEEIRQYF 202
PV+++G +D K A +I +
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKEL 141
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 41.1 bits (96), Expect = 2e-04
Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 51/183 (27%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
K+ +G AGKT+LL L + GL+ K
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQ------------------THGLNVVTKQAP 84
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
++ H W D +E + Q +T S
Sbjct: 85 NIKGLENDDELKECLFH----FW--------------DFGGQEIM---HASHQFFMTRSS 123
Query: 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGNKIDKHG--AASEEEIR 199
+ ++ D L+ + E PV+++ NKID++ +++I
Sbjct: 124 VY-MLLL-----DSRTDSNKHYWLRHI---EKYGGKSPVIVVMNKIDENPSYNIEQKKIN 174
Query: 200 QYF 202
+ F
Sbjct: 175 ERF 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 48/279 (17%), Positives = 89/279 (31%), Gaps = 101/279 (36%)
Query: 3 QIWDWFTGVL-----GY---------LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 48
Q+ + F +L G+ L K FLG + +++ ++ Q
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGK-----FLGY-------VSSLVEPSKVGQ 79
Query: 49 PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDY 108
L+ L + +L ++ +H L L + TL T+ + K+Y
Sbjct: 80 FDQVLNLCLTEF-------ENCYLEGND------IHALAAKLLQENDTTLVKTKELIKNY 126
Query: 109 FPAV----------------------DAIVFLV-----DTSD-----RERFEESKSELQC 136
A +A + + +T D R+ ++ +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 137 LLTDESLASSIVFLV-DTSDRERFEESKSELQCLLTDES-------LASCPV---LILGN 185
L+ + A ++ L+ T D E+ + L + S L S P+ LI
Sbjct: 187 LI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI--- 241
Query: 186 KIDKHGAASEEEIRQYF---GLYGLTTGKVATPRSEMSG 221
G + Y L G T G++ RS + G
Sbjct: 242 -----GVIQ---LAHYVVTAKLLGFTPGEL---RSYLKG 269
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 38.2 bits (88), Expect = 0.002
Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 30/147 (20%)
Query: 44 DRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101
RL+ +PT +L T ++ F + K+ ++ L D V
Sbjct: 143 KRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFD------VGGQRNE 196
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
RR W F V A++F S+ + Q L DE + R E
Sbjct: 197 RRKWIHLFEGVTAVIFCAAISEYD---------QTLFEDEQ-------------KNRMME 234
Query: 162 SKSELQCLLTDESLASCPVLILGNKID 188
+K +L ++ NK D
Sbjct: 235 TKELFDWVLKQPCFEKTSFMLFLNKFD 261
Score = 27.4 bits (60), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 23 KLLFLGLDNAGKTTLLHMLK 42
KLL LG +GK+T+ +K
Sbjct: 11 KLLLLGAGESGKSTIFKQIK 30
Score = 27.4 bits (60), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 68 KLLFLGLDNAGKTTLLHMLK 87
KLL LG +GK+T+ +K
Sbjct: 11 KLLLLGAGESGKSTIFKQIK 30
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 38.1 bits (89), Expect = 0.002
Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 67/193 (34%)
Query: 19 TKSGKLLFLGL---DNAGKTTLLHMLKDDRLA--QPVP--TLHPILGYLGLWTKSGKLLF 71
+G ++ + N GK++ ++ L ++ T P+ + G +
Sbjct: 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSM-ELHPIGPVTL 87
Query: 72 L---GLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
+ GLD+ G+ L R+ + RRV+ D + + D++
Sbjct: 88 VDTPGLDDVGE------LGRLRVEK-------ARRVFYR----ADCGILVTDSAP----- 125
Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188
++ + F+E + P +++ NKID
Sbjct: 126 --------TPYEDDVV------------NLFKEME--------------IPFVVVVNKID 151
Query: 189 KHGAASEEEIRQY 201
G +EE Y
Sbjct: 152 VLGEKAEELKGLY 164
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 36.4 bits (85), Expect = 0.006
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 41/161 (25%)
Query: 65 KSGKLLFLGLD-------NAGKTTLL-HMLKDDRLA--QPVP-TLHPTRRVWKDYFPAVD 113
+G LL GL N GK+TLL +L +DR A +P T TR V + +
Sbjct: 235 DAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGT---TRDVISEEI-VIR 289
Query: 114 AIVF-LVDT-------SDR-ERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162
I+F +VDT +D ER E + E++ A ++F++D S
Sbjct: 290 GILFRIVDTAGVRSETNDLVERLGIERTLQEIE-------KADIVLFVLDAS-----SPL 337
Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFG 203
E + +L E + + L++ NK+D +EEEI+ G
Sbjct: 338 DEEDRKIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKLG 376
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 35.5 bits (81), Expect = 0.011
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 23/114 (20%)
Query: 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
V R+ W + F +V +I+FLV +S+ + Q L+ D
Sbjct: 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFD---------QVLMEDR------------ 245
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYG 206
R ES + + ++ + ++ +++ NK D I+ YF +
Sbjct: 246 -QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE 298
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 34.4 bits (80), Expect = 0.013
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177
+VDT + E+ ++S S+ CL A IV+ +DR FE + L
Sbjct: 56 VVDTWEAEKLDKSWSQESCLQGGS--AYVIVY--SIADRGSFESASELRIQLRRTHQADH 111
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
P++++GNK D S EE R
Sbjct: 112 VPIILVGNKADLARCREVSVEEGRAC 137
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 35.2 bits (82), Expect = 0.018
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 40/160 (25%)
Query: 65 KSGKLLFLGLD-------NAGKTTLL-HMLKDDRLA--QPVP-TLHPTRRVWKDYFPAVD 113
G+LL GL N GK++LL + DR A +P T TR V + V
Sbjct: 216 DKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGT---TRDVVESQL-VVG 270
Query: 114 AIVF-LVDT------SDR-ERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESK 163
I ++DT SD+ E+ E S+ A ++ +D +
Sbjct: 271 GIPVQVLDTAGIRETSDQVEKIGVERSRQAAN-------TADLVLLTIDAA-----TGWT 318
Query: 164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFG 203
+ Q + E + P++++ NKID +
Sbjct: 319 TGDQEIY--EQVKHRPLILVMNKIDLVEKQLITSLEYPEN 356
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 34.2 bits (78), Expect = 0.023
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRER--FEESKSELQCLLTDESLASCPVLILGN 185
E E + + + L + +D S F++ + L + P++++
Sbjct: 147 LEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLT 206
Query: 186 KID 188
K D
Sbjct: 207 KCD 209
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 33.6 bits (77), Expect = 0.035
Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 26/177 (14%)
Query: 69 LLFLGLDNAGKTTLLHML---KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVF-LVDT--- 121
++ G N GK++ ++++ D + T + + + ++DT
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFD-----HKLNKYQIIDTPGL 86
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF--EESKSELQCLLTDESLASCP 179
DR + E+ + + I+F++D S++ +E + + ++
Sbjct: 87 LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKS 144
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236
++I NKIDK S + + + PI+ S L G
Sbjct: 145 IVIGFNKIDKCNMDSLSIDNK----------LLIKQILDNVKNPIKFSSFSTLTGVG 191
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 34.1 bits (79), Expect = 0.037
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 65 KSGKLLFLGLD-------NAGKTTLL-HMLKDDRLA--QPVP-TLHPTRRVWKDYFPAVD 113
+ G+++ G+ NAGK+TLL +L +R A +P T TR ++ F D
Sbjct: 225 QHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGT---TRDYIEECF-IHD 279
Query: 114 AIVF-LVDT------SDR-ERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESK 163
+F L DT + E S+ ++ A I++L+D ER ++
Sbjct: 280 KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA-------EADLILYLLDLG-TERLDDEL 331
Query: 164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEE 197
+E++ L + + L + NK+D+ A
Sbjct: 332 TEIRELK--AAHPAAKFLTVANKLDRAANADALI 363
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 33.5 bits (76), Expect = 0.047
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 36/147 (24%)
Query: 44 DRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT 101
DR+A P +PT +L T + F + + V
Sbjct: 133 DRVADPSYLPTQQDVLRVRVPTTGIIEYPF----DLQSVIFRMV--------DVGGQRSE 180
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
RR W F V +I+FLV S+ + Q L+ + + R EE
Sbjct: 181 RRKWIHCFENVTSIMFLVALSEYD---------QVLVESD-------------NENRMEE 218
Query: 162 SKSELQCLLTDESLASCPVLILGNKID 188
SK+ + ++T + V++ NK D
Sbjct: 219 SKALFRTIITYPWFQNSSVILFLNKKD 245
Score = 26.5 bits (58), Expect = 7.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 23 KLLFLGLDNAGKTTLLHMLK 42
KLL LG +GK+T + ++
Sbjct: 9 KLLLLGTGESGKSTFIKQMR 28
Score = 26.5 bits (58), Expect = 7.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 68 KLLFLGLDNAGKTTLLHMLK 87
KLL LG +GK+T + ++
Sbjct: 9 KLLLLGTGESGKSTFIKQMR 28
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 32.5 bits (75), Expect = 0.059
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 28/136 (20%)
Query: 76 NAGKTTLL-HMLKDDRLA--QPVP-TLHPTRRVWKDYFPAVDAIVF-LVDT------SDR 124
NAGK++LL + + A + T TR V +++ +D + ++DT SD
Sbjct: 14 NAGKSSLLNALAGREA-AIVTDIAGT---TRDVLREHI-HIDGMPLHIIDTAGLREASDE 68
Query: 125 -ERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
ER E + E++ A ++F+VD + +E+ A P+
Sbjct: 69 VERIGIERAWQEIEQ-------ADRVLFMVDGT--TTDAVDPAEIWPEFIARLPAKLPIT 119
Query: 182 ILGNKIDKHGAASEEE 197
++ NK D G
Sbjct: 120 VVRNKADITGETLGMS 135
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 32.8 bits (75), Expect = 0.062
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 31/133 (23%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPTRRVWKDY--FPAVDAIVF---LVDT 121
K++ +G GKT LLH+ D + VPT V+++Y +D L DT
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPT------VFENYTASFEIDTQRIELSLWDT 62
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESL 175
S ++ + S S L+ D S E + E+Q E
Sbjct: 63 SGSPYYDN--------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-----EFC 109
Query: 176 ASCPVLILGNKID 188
+ +L++G K D
Sbjct: 110 PNTKMLLVGCKSD 122
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 33.2 bits (75), Expect = 0.075
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 22/95 (23%)
Query: 94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
V RR W F V AI+F+V +S + +
Sbjct: 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM----------------------VIRED 260
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKID 188
+ R +E+ + + + + L + V++ NK D
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 32.2 bits (74), Expect = 0.085
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 28/96 (29%)
Query: 120 DTSDRERFEESKSELQCLLTDESLASS---------IVFLVDTSDRERFEESKS---ELQ 167
DT+ +ERF+ SL + +VF D + F+ S E
Sbjct: 63 DTAGQERFQ-------------SLGVAFYRGADCCVLVF--DVTAPNTFKTLDSWRDEFL 107
Query: 168 CLLTDESLASCPVLILGNKID-KHGAASEEEIRQYF 202
+ + P ++LGNKID ++ + + + +
Sbjct: 108 IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 31.9 bits (73), Expect = 0.12
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT------RRVWKDYFPAVDAIVFLVDT 121
+++ +G GK+TL ++ R + D A ++ + +
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLASCP 179
+ L D + +L+ +DR FE++ L P
Sbjct: 98 KGENEW----------LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 147
Query: 180 VLILGNKID 188
++++GNK D
Sbjct: 148 IILVGNKSD 156
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 30.5 bits (69), Expect = 0.15
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 28/66 (42%)
Query: 193 ASEEEIRQYFGLYGLTTGKVATP----------------------------RSEMSGRPI 224
S+EEI Q+F + + P + + R I
Sbjct: 27 CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86
Query: 225 ELFMCS 230
E+F S
Sbjct: 87 EIFKSS 92
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 31.4 bits (72), Expect = 0.16
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 28/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVF---LV 119
+++ G GK++L+ T PT R+V D V +
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTF---RDTYIPTIEDTYRQVIS-----CDKSVCTLQIT 61
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLL-TDESLA 176
DT+ +F + S++ F++ + ++ EE + ++ S+
Sbjct: 62 DTTGSHQFP--------AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE 113
Query: 177 SCPVLILGNKIDKHG-AASEEEIRQY 201
PV+++GNK D+ E +
Sbjct: 114 DIPVMLVGNKCDETQREVDTREAQAV 139
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 31.1 bits (71), Expect = 0.18
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT------RRVWKDYFPAVDAIVFLVDT 121
+++ +G GK+TL ++ R + D A ++ + +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLASCP 179
+ L D + +L+ +DR FE++ L P
Sbjct: 67 KGENEW----------LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 180 VLILGNKID 188
++++GNK D
Sbjct: 117 IILVGNKSD 125
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.5 bits (72), Expect = 0.24
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 36/144 (25%)
Query: 76 NAGKTTLLHMLKD------DRL-AQPVPTLHPT-RRVWKDYFPAVDAIVFLVDT------ 121
N+GKT+L + L +L T+ P + + + LVDT
Sbjct: 189 NSGKTSLFNSLTGLTQKVDTKLFT----TMSPKRYAIPINNRKIM-----LVDTVGFIRG 239
Query: 122 ---SDRERFEESKSELQCLLTDESL-ASSIVFLVDTSDRER-FEESKSELQCLLTDESLA 176
+ F L E+ + +++ ++D++ E E+ +L + ++
Sbjct: 240 IPPQIVDAF---FVTL-----SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS 291
Query: 177 SCPVLILGNKIDKHGAASEEEIRQ 200
P+L+ NKIDK +++
Sbjct: 292 GKPILVTLNKIDKINGDLYKKLDL 315
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 30.6 bits (70), Expect = 0.25
Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 29/147 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVF---LV 119
++ G GK++L+ + PT R+V D + +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTF---RESYIPTVEDTYRQVIS-----CDKSICTLQIT 56
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSEL-QCLLTDESLA 176
DT+ +F + S++ F++ + R+ EE K Q +
Sbjct: 57 DTTGSHQFP--------AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 108
Query: 177 SCPVLILGNKIDKHG--AASEEEIRQY 201
S P++++GNK D+ E
Sbjct: 109 SIPIMLVGNKCDESPSREVQSSEAEAL 135
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.00A {Homo sapiens} PDB:
2ek6_A
Length = 95
Score = 29.6 bits (67), Expect = 0.25
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 29/68 (42%)
Query: 192 AASEEEIRQYFGLYGLTTGKVATP-----------------------------RSEMSGR 222
S +EI +F Y + G V + R
Sbjct: 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85
Query: 223 PIELFMCS 230
++L S
Sbjct: 86 KVKLSGPS 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 30.9 bits (70), Expect = 0.28
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 31/133 (23%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDY--FPAVDAIVF---LVDT 121
KL+ +G GKT LL + D+ VPT V+++Y VD L DT
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT------VFENYIADIEVDGKQVELALWDT 80
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESL 175
+ +E ++ L S + V L+ + E E++
Sbjct: 81 AGQEDYDR--------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-----HFC 127
Query: 176 ASCPVLILGNKID 188
+ P++++GNK D
Sbjct: 128 PNVPIILVGNKKD 140
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 30.2 bits (69), Expect = 0.35
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 24/98 (24%)
Query: 120 DTSDRERFEESKSELQCLLTDESLASS------IVFLV-DTSDRERFEESKS---ELQCL 169
DT+ +ERF SL + L D + F+ + E
Sbjct: 62 DTAGQERFR-------------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 108
Query: 170 LTDESLASCPVLILGNKID-KHGAASEEEIRQYFGLYG 206
+ S P +ILGNKID S EE + + G
Sbjct: 109 ADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNG 146
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 30.2 bits (69), Expect = 0.40
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 147 IVFLVDTSDRERFEESKS--ELQCLLTDESLASCPVLILGNKIDKHG--AASEEEIRQY 201
+V+ R+ F+ S S EL L E+ S P L+LGNK+D ++ E
Sbjct: 97 VVY--SVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL 153
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 29.7 bits (68), Expect = 0.45
Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 28/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
K++ LG GK+ L + PT R+ + VD+ + +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIE-----VDSSPSVLEIL 56
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ E+F + D + + F++ +++ F++ K ++ +
Sbjct: 57 DTAGTEQFA--------SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
PV+++GNK+D S E R
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRAL 134
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 30.2 bits (69), Expect = 0.46
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 28/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
KL+ +G GK+ L V PT ++ VD I +
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYF---VSDYDPTIEDSYTKICS-----VDGIPARLDIL 62
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ +E F + ++ + + FL+ +DR+ F E +L +
Sbjct: 63 DTAGQEEFG--------AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD 114
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
PV+++GNK D E +
Sbjct: 115 FPVVLVGNKADLESQRQVPRSEASAF 140
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 29.9 bits (68), Expect = 0.49
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 26/95 (27%)
Query: 120 DTSDRERFEESKSELQCLLTDESLASS------IVFLV-DTSDRERFEESKS---ELQCL 169
DT+ +ERF+ SL + LV D ++ FE KS E
Sbjct: 64 DTAGQERFQ-------------SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVH 110
Query: 170 LTDESLASCPVLILGNKIDKHG---AASEEEIRQY 201
S + P +ILGNKID SE+ ++
Sbjct: 111 ANVNSPETFPFVILGNKIDAEESKKIVSEKSAQEL 145
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 30.0 bits (68), Expect = 0.50
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 48/180 (26%)
Query: 76 NAGKTTLLHMLKDDRLA---QPVPTLHPTRRVWKDYFPAVDAIVFLVDT----------- 121
N GK+TL++ L ++ +P T WK++ ++D
Sbjct: 11 NVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHK--------IIDMPGFGFMMGLPK 62
Query: 122 SDRERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE 173
+ER E++ + V +VD + + + D
Sbjct: 63 EVQERIKDEIVHFIEDNAKNIDV----------AVLVVDGKAAPEIIKRWEKRGEIPIDV 112
Query: 174 SLA------SCPVLILGNKIDK--HGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
P ++ NK+DK + + + F + KV P S G IE
Sbjct: 113 EFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIE 172
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 30.2 bits (68), Expect = 0.50
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 31/133 (23%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPTRRVWKDY--FPAVDAIVF---LVDT 121
KL+ +G GKT +L +L D + VPT V+++Y + L DT
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPT------VFENYTACLETEEQRVELSLWDT 82
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESL 175
S ++ + + S L+ D S E + + E+ +
Sbjct: 83 SGSPYYDN--------VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-----DYC 129
Query: 176 ASCPVLILGNKID 188
S VL++G K D
Sbjct: 130 PSTRVLLIGCKTD 142
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 30.1 bits (68), Expect = 0.51
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 31/133 (23%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPA--VDAIVF---LVDT 121
KL+ +G GKT LL + D VPT V+++Y VD L DT
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPT------VFENYVADIEVDGKQVELALWDT 80
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESL 175
+ +E ++ L S + V L+ + E E++
Sbjct: 81 AGQEDYDR--------LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-----HFC 127
Query: 176 ASCPVLILGNKID 188
+ P++++ NK D
Sbjct: 128 PNVPIILVANKKD 140
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 29.7 bits (67), Expect = 0.56
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 31/133 (23%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPTRRVWKDY--FPAVDAIVF---LVDT 121
K + +G GKT LL + +PT V+ +Y VD L DT
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPT------VFDNYSANVMVDGKPVNLGLWDT 85
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESL 175
+ +E ++ L S + VFL+ FE ++ E++
Sbjct: 86 AGQEDYDR--------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-----HHC 132
Query: 176 ASCPVLILGNKID 188
+ P++++G K+D
Sbjct: 133 PNTPIILVGTKLD 145
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 30.4 bits (68), Expect = 0.58
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 22/94 (23%)
Query: 95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS 154
V R+ W F V AI+F V SD + L DE
Sbjct: 200 VGGQRSERKKWIHCFEGVTAIIFCVALSDYD---------LVLAEDEE------------ 238
Query: 155 DRERFEESKSELQCLLTDESLASCPVLILGNKID 188
R ES + ++ +++ NK D
Sbjct: 239 -MNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 30.3 bits (67), Expect = 0.58
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 23/189 (12%)
Query: 23 KLLFLGLDNAGKTTLL-HMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT 80
+LL LG GK+T L ++ ++ L + P + + K+ D
Sbjct: 71 RLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVL--RYGPEKKVTIHFNDGKSPQ 128
Query: 81 TLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVF------------LVDTSDRERFE 128
L + + K FP VD V +VD+ E
Sbjct: 129 QLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE 188
Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188
+ + +I+F++ S + E + L V L N D
Sbjct: 189 ARNELSLGYVNN---CHAILFVMRASQ----PCTLGERRYLENYIKGRGLTVFFLVNAWD 241
Query: 189 KHGAASEEE 197
+ + +
Sbjct: 242 QVRESLIDP 250
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 29.7 bits (67), Expect = 0.59
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 29/132 (21%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPA--VDAIVF---LVDTS 122
K + +G GKT LL + P + V+ +Y VD L DT+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF----PGEYIP-TVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 123 DRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESLA 176
+E ++ L S + V L+ FE ++ E++
Sbjct: 62 GQEDYDR--------LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-----HHCP 108
Query: 177 SCPVLILGNKID 188
+ P++++G K+D
Sbjct: 109 NTPIILVGTKLD 120
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding
domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 98
Score = 28.8 bits (65), Expect = 0.61
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 29/68 (42%)
Query: 192 AASEEEIRQYFGLYGLTTGKV------------------ATP-----------RSEMSGR 222
S +EI +F Y + G V + + R
Sbjct: 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85
Query: 223 PIELFMCS 230
++L + S
Sbjct: 86 KVKLVLGS 93
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 29.5 bits (67), Expect = 0.68
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
KL+ +G GK+ L L + V PT R+ +D L +
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVV-----IDGETCLLDIL 74
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ +E + + D+ + + FL ++ + F + + + +
Sbjct: 75 DTAGQEEYS--------AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126
Query: 178 CPVLILGNKIDKH 190
P++++GNK D
Sbjct: 127 VPMVLVGNKCDLP 139
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 29.7 bits (67), Expect = 0.68
Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 31/137 (22%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPTRRVWKDYFPA--VDAIVF--- 117
+S K++ +G GKT+LL + D + PT V++ Y V
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT------VFERYMVNLQVKGKPVHLH 85
Query: 118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLT 171
+ DT+ ++ ++ L + V L+ D + F+ + E+
Sbjct: 86 IWDTAGQDDYDR--------LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN---- 133
Query: 172 DESLASCPVLILGNKID 188
P++++G K D
Sbjct: 134 -HFCKKVPIIVVGCKTD 149
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 29.3 bits (66), Expect = 0.75
Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 31/137 (22%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPTRRVWKDY--FPAVDAIVF--- 117
++ K + +G GKT LL + VPT V+ ++ V+
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT------VFDNFSANVVVNGATVNLG 59
Query: 118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLT 171
L DT+ +E + L S + VF++ + +E EL+
Sbjct: 60 LWDTAGQEDYNR--------LRPLSYRGADVFILAFSLISKASYENVSKKWIPELK---- 107
Query: 172 DESLASCPVLILGNKID 188
P++++G K+D
Sbjct: 108 -HYAPGVPIVLVGTKLD 123
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 29.0 bits (66), Expect = 0.83
Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 26/132 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT------RRVWKDYFPAVD---AIVFL 118
K++ +G GK+TL + R VD + +
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQG---DHAHEMENSEDTYERRIM-----VDKEEVTLIV 55
Query: 119 VDTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLA 176
D ++ L D L + FL+ +DR F + L L
Sbjct: 56 YDIWEQGDAG-------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 108
Query: 177 SCPVLILGNKID 188
PV+++GNK D
Sbjct: 109 DLPVILVGNKSD 120
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein,
GTP binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.5 bits (67), Expect = 0.87
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Query: 26 FLGLDNAGKTTLL-HMLKDD 44
FLG AGKTTLL H+L +
Sbjct: 12 FLG---AGKTTLLRHILNEQ 28
Score = 29.5 bits (67), Expect = 0.87
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Query: 71 FLGLDNAGKTTLL-HMLKDD 89
FLG AGKTTLL H+L +
Sbjct: 12 FLG---AGKTTLLRHILNEQ 28
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 29.1 bits (66), Expect = 0.93
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG--AASEEEIRQY 201
+V+ D +DR FEE L + + ++++GNK D S EE +
Sbjct: 104 LVY--DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL 158
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.1 bits (66), Expect = 0.94
Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 26/132 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT------RRVWKDYFPAVD---AIVFL 118
K++ +G GK+TL + P R VD + +
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQG---DSAHEPENPEDTYERRIM-----VDKEEVTLVV 76
Query: 119 VDTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLA 176
D ++ L D L + FL+ +DR F + L L
Sbjct: 77 YDIWEQGDAGG-------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 177 SCPVLILGNKID 188
PV+++GNK D
Sbjct: 130 DLPVILVGNKSD 141
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H';
structural genomics, RRM domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 102
Score = 27.7 bits (62), Expect = 1.3
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 26/73 (35%)
Query: 193 ASEEEIRQYFGLYGLT--------TGKV--------ATP----------RSEMSGRPIEL 226
A+E +I +F G+V AT ++ M R +EL
Sbjct: 27 ATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86
Query: 227 FMCSVLMRQGYGD 239
F+ S G G
Sbjct: 87 FLNSTAGTSGSGP 99
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 28.6 bits (65), Expect = 1.3
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 28/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
KL+ LG GK+ L V PT R+ + VD + +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQVE-----VDCQQCMLEIL 56
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ E+F + D + + F + + + F + + + +L +
Sbjct: 57 DTAGTEQFT--------AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
P++++GNK D +E+ +
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNL 134
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON
willebrand DISE domain, haemostasis; HET: NAG; 1.70A
{Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Length = 199
Score = 28.8 bits (65), Expect = 1.4
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 93 QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD---RERFEESK 131
V TL P R +D + F+++ SD F SK
Sbjct: 8 LGVSTLGPKRNS-----MVLD-VAFVLEGSDKIGEADFNRSK 43
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 28.2 bits (64), Expect = 1.5
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 26/131 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
KL+ +G GK+ L L + V PT R+ +D L +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHF---VDECDPTIEDSYRKQVV-----IDGETCLLDIL 56
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ +E + + D+ + + FL ++ + FE+ + + +
Sbjct: 57 DTAGQEEYS--------AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 178 CPVLILGNKID 188
P++++GNK D
Sbjct: 109 VPMVLVGNKSD 119
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 28.6 bits (64), Expect = 1.6
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH-PTRRVWKDY--FPAVDAIVF---LVDT 121
K + +G GKT LL +D P + PT V+ Y V + L DT
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAF----PEEYVPT--VFDHYAVSVTVGGKQYLLGLYDT 73
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLASCP 179
+ +E ++ L S + VFL+ + F+ K E L + + + P
Sbjct: 74 AGQEDYDR--------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVP 124
Query: 180 VLILGNKID 188
L++G +ID
Sbjct: 125 FLLIGTQID 133
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 28.2 bits (64), Expect = 1.6
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG--AASEEEIRQY 201
VF ++ E F + + +L + + P L++GNK D S EE +
Sbjct: 81 CVF--SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 28.6 bits (64), Expect = 1.7
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 31/133 (23%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPTRRVWKDY--FPAVDAIVF---LVDT 121
K++ +G GKT LLH+ D + VPT V+++Y +D L DT
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPT------VFENYTASFEIDTQRIELSLWDT 83
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDESL 175
S ++ + S S L+ D S E + E+Q E
Sbjct: 84 SGSPYYDN--------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-----EFC 130
Query: 176 ASCPVLILGNKID 188
+ +L++G K D
Sbjct: 131 PNTKMLLVGCKSD 143
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.58.7.1
Length = 124
Score = 27.9 bits (62), Expect = 1.8
Identities = 5/66 (7%), Positives = 14/66 (21%), Gaps = 28/66 (42%)
Query: 193 ASEEEIRQYFGLYGLTTGKV------------------ATP----------RSEMSGRPI 224
A + + +F + + + M R I
Sbjct: 37 AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96
Query: 225 ELFMCS 230
++ +
Sbjct: 97 QVHPIT 102
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 27.9 bits (63), Expect = 2.0
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 30/145 (20%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT----RRVWKDYFPAVDAIVFL---VD 120
K+ +G ++GK+ L+H V P ++ VD +L D
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTGTY---VQEESPEGGRFKKEIV-----VDGQSYLLLIRD 73
Query: 121 TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180
+ + + VF D F+ + L + + + P+
Sbjct: 74 EGGPPELQFAAWVDAVVF---------VF--SLEDEISFQTVYNYFLRLCSFRNASEVPM 122
Query: 181 LILGNKIDKHGAA----SEEEIRQY 201
+++G + A + R+
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKL 147
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 27.9 bits (63), Expect = 2.1
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG--AASEEEIRQY 201
IV+ +D+ FE Q +L + S P++++ NK+D + ++ ++
Sbjct: 95 IVY--SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 27.9 bits (63), Expect = 2.2
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG--AASEEEIRQY 201
VF ++ E F + + +L + + P L++GNK D S EE +
Sbjct: 95 CVF--SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif,
G-tract, G-quadruplex, alternative splicing, RNA binding
protein; NMR {Homo sapiens} PDB: 2kg1_A
Length = 139
Score = 27.5 bits (61), Expect = 2.2
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 216 RSEMSGRPIELFMCSVL----------MRQGYG 238
R+ M R IELF+ S + QG G
Sbjct: 107 RANMQHRYIELFLNSTTGASNGAYSSQVMQGMG 139
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.9 bits (63), Expect = 2.3
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 28/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
K+ LG + GK++L + + V + PT ++ V+ + V
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLIT-----VNGQEYHLQLV 59
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ ++ + + +++ + + FE K LL
Sbjct: 60 DTAGQDEYS--------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 111
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
P++++GNK D H S EE +
Sbjct: 112 IPIMLVGNKKDLHMERVISYEEGKAL 137
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 28.0 bits (63), Expect = 2.3
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG-AASEEEIRQYF 202
A ++ + D + R+ F + + L L T + +++GNKIDK E ++
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA 147
Query: 203 GLYGL 207
+ +
Sbjct: 148 RKHSM 152
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 91
Score = 26.9 bits (60), Expect = 2.4
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 26/64 (40%)
Query: 193 ASEEEIRQYFGLY------------GLTTG----KVATP----------RSEMSGRPIEL 226
+E+ + ++ G TG + R M GR IE+
Sbjct: 22 VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81
Query: 227 FMCS 230
F
Sbjct: 82 FREK 85
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 27.6 bits (62), Expect = 3.0
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVFL---V 119
KL+ +G D GK+ L L + V PT R+ +D L +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVV-----IDGETCLLDIL 57
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ +E + + D+ + + FL ++ + FE+ + + +
Sbjct: 58 DTAGQEEYS--------AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 178 CPVLILGNKIDKHG-AASEEEIRQY 201
P++++GNK D ++ +
Sbjct: 110 VPMVLVGNKCDLPSRTVDTKQAQDL 134
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 27.6 bits (62), Expect = 3.1
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 56/158 (35%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT--------------RRV----WKDYF 109
K++ G GK++ L L + + T R W
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFR---ENISATLGVDFQMKTLIVDGERTVLQLW---- 82
Query: 110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASS-------IVFLVDTSDRERFEES 162
DT+ +ERF S+A S ++ L D + + F
Sbjct: 83 ----------DTAGQERFR-------------SIAKSYFRKADGVLLLYDVTCEKSFLNI 119
Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQ 200
+ + + D + + P++++GNK D A+ E +
Sbjct: 120 REWVDMI-EDAAHETVPIMLVGNKADIRDTAATEGQKC 156
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 26.6 bits (59), Expect = 3.3
Identities = 3/31 (9%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRP 223
++ ++ Q+ + V +G+
Sbjct: 27 ITKMDVLQFLEGIPVDENAVHVLVDN-NGQG 56
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 27.1 bits (61), Expect = 3.5
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 29/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVD---AIVFLV 119
K+L LG GK+ L + R VD A + +
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVE----DGPEAEAAGHTYDRSIV-----VDGEEASLMVY 54
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
D +++ L +A +++ +D+ FE++ L
Sbjct: 55 DIWEQDGGR--------WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 106
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
P++++GNK D S +E R
Sbjct: 107 VPIILVGNKSDLVRSREVSVDEGRAC 132
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 27.3 bits (61), Expect = 4.1
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 148 VFLV-DTSDRERFEESKS---ELQCLLTDESLASCPVLILGNKID---KHGAASEEEIRQ 200
LV D S E FE K+ L+ D +++ NK D + + +
Sbjct: 100 AILVFDVSSMESFESCKAWFELLKSARPDRE-RPLRAVLVANKTDLPPQRHQVRLDMAQD 158
Query: 201 Y 201
+
Sbjct: 159 W 159
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 27.3 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 20 KSGKLL-FLGLDNAGKTTLLHMLKD 43
K G L+ F G+D +GK++ +LKD
Sbjct: 2 KKGVLIAFEGIDGSGKSSQATLLKD 26
Score = 27.3 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 65 KSGKLL-FLGLDNAGKTTLLHMLKD 88
K G L+ F G+D +GK++ +LKD
Sbjct: 2 KKGVLIAFEGIDGSGKSSQATLLKD 26
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.6 bits (61), Expect = 4.4
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 15 LGLWTKSGKLLFLGLDNAGKTTLL-HMLKDDRLAQPVPTLHPILG 58
+ + + G + +G N GK+T + ++++ V T G
Sbjct: 156 INRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG 200
Score = 26.8 bits (59), Expect = 7.0
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLL-HMLKDDRLAQPVPTLHPT 101
++ + + + G + +G N GK+T + ++++ V T
Sbjct: 152 VMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF 198
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 4.5
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-----RRVWKDYFPAVDAIVF---LV 119
K++ LG GKT+L H + PT ++ + F LV
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEF---SEGYDPTVENTYSKIVT-----LGKDEFHLHLV 77
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKSELQCLLTDESLAS 177
DT+ ++ + +L + +++ + F+ +S Q L
Sbjct: 78 DTAGQDEYS--------ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129
Query: 178 CPVLILGNKIDKHG--AASEEEIRQY 201
PV+++GNK D E ++
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKL 155
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 27.2 bits (61), Expect = 4.6
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG--AASEEEIRQY 201
VF ++ E F + + +L + + P L++GNK D S EE +
Sbjct: 91 CVF--SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.2 bits (61), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 19 TKSGKLL-FLGLDNAGKTTLLHMLKD 43
K GK + F GLD +GK+T +L +
Sbjct: 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32
Score = 27.2 bits (61), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 64 TKSGKLL-FLGLDNAGKTTLLHMLKD 88
K GK + F GLD +GK+T +L +
Sbjct: 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 10/92 (10%)
Query: 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172
+FLV K ++ + + + + E+F +
Sbjct: 43 GLTIFLV-------NNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHFYMF 95
Query: 173 ESLASCP-VLILGNKIDKHGAASEEEIRQYFG 203
+ V +G SE ++++
Sbjct: 96 NDNKNSVAVGYVG--CGSVADLSEADMKRVVL 125
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 26.9 bits (60), Expect = 5.9
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 33/134 (24%)
Query: 68 KLLFLGLDNA-GKTTLLHMLKDDRLAQPVPTLH-PTRRVWKDYFP--AVDAIVF---LVD 120
K++ +G D A GKT LL + PT + PT V++++ F L D
Sbjct: 25 KIVVVG-DGAVGKTCLLLAFSKGEI----PTAYVPT--VFENFSHVMKYKNEEFILHLWD 77
Query: 121 TSDRERFEESKSELQCLLTDESLASSIVFLV--DTSDRERFEESKS----ELQCLLTDES 174
T+ +E ++ L S A S V L+ ++R F+ + E++
Sbjct: 78 TAGQEEYDR--------LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-----HY 124
Query: 175 LASCPVLILGNKID 188
+ + +++G K+D
Sbjct: 125 IDTAKTVLVGLKVD 138
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 27.1 bits (61), Expect = 6.2
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189
I+F++D ++ R + + + + PV+++ NKIDK
Sbjct: 96 ILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDK 134
>1sgw_A Putative ABC transporter; structural genomics, P protein
structure initiative, southeast collaboratory for S
genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP:
c.37.1.12
Length = 214
Score = 26.7 bits (60), Expect = 6.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 26 FLGLDNAGKTTLLHML 41
F G + GKTTLL +
Sbjct: 40 FHGPNGIGKTTLLKTI 55
Score = 26.7 bits (60), Expect = 6.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 71 FLGLDNAGKTTLLHML 86
F G + GKTTLL +
Sbjct: 40 FHGPNGIGKTTLLKTI 55
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 26.8 bits (60), Expect = 6.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 27 LGLDNAGKTTLLHMLKDDRLAQPV----P--TLHPILG 58
+G + GK+TLL ++ A+P TL P LG
Sbjct: 164 VGFPSVGKSTLLSVVSS---AKPKIADYHFTTLVPNLG 198
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 26.5 bits (59), Expect = 7.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGL 207
A+ P+++ NK+DK A+ + + Q Y L
Sbjct: 106 ANVPIIVAINKMDKPE-ANPDRVMQELMEYNL 136
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 26.4 bits (58), Expect = 8.3
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 114 AIVFLVDTS---DRERFEESKSELQCLLTDESLASSIVFLVDTSDRE 157
++F VD S R E+K ++ LL A V L+
Sbjct: 7 VLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTA 53
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 26.4 bits (59), Expect = 8.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 50 VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHM 85
+PT + + YL L T +G L +GL +L +
Sbjct: 242 IPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSV 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 26.1 bits (58), Expect = 9.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 28 GLDNAGKTTLLHMLKD 43
G+D AGK TL+ L
Sbjct: 7 GVDGAGKRTLVEKLSG 22
Score = 26.1 bits (58), Expect = 9.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 73 GLDNAGKTTLLHMLKD 88
G+D AGK TL+ L
Sbjct: 7 GVDGAGKRTLVEKLSG 22
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.7 bits (58), Expect = 9.2
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 24 LLFLGLDNAGKTTLL-HMLKDDRLAQ---PVPT 52
+L G + GKT+ + ++L+ + P PT
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPT 100
Score = 26.7 bits (58), Expect = 9.2
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 69 LLFLGLDNAGKTTLL-HMLKDDRLAQ---PVPT 97
+L G + GKT+ + ++L+ + P PT
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPT 100
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 26.1 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 20 KSGKLL-FLGLDNAGKTTLLHMLKD 43
GKL+ GLD GKTT ++L
Sbjct: 3 GRGKLILIEGLDRTGKTTQCNILYK 27
Score = 26.1 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 65 KSGKLL-FLGLDNAGKTTLLHMLKD 88
GKL+ GLD GKTT ++L
Sbjct: 3 GRGKLILIEGLDRTGKTTQCNILYK 27
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 26.4 bits (59), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 50 VPTLHPILGYLGLWTKSGKLLFLGL 74
V +HP+L GL GKL+ +G
Sbjct: 259 VSAVHPLLPLFGLLKSHGKLILVGA 283
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.4 bits (59), Expect = 9.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLY 205
+I+ NKID ++E+ ++ +Y
Sbjct: 112 EPVIVFNKIDLLNEEEKKELERWISIY 138
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 26.3 bits (59), Expect = 9.9
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 17/62 (27%)
Query: 147 IVFLVDTS------DRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQ 200
+V++VD D K + P+L++GNK+D A EE +
Sbjct: 90 VVWVVDLRHPPTPEDELVARALK---------PLVGKVPILLVGNKLDA--AKYPEEAMK 138
Query: 201 YF 202
+
Sbjct: 139 AY 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,837,353
Number of extensions: 218044
Number of successful extensions: 1382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 184
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)