RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy871
(249 letters)
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 111 bits (277), Expect = 5e-31
Identities = 103/194 (53%), Positives = 127/194 (65%), Gaps = 10/194 (5%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
+L +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT
Sbjct: 3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 62
Query: 116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
R ++ + IVFLVD +D ER ESK EL L+TDE++
Sbjct: 63 DLGGHIQARRVWKNYLPAING----------IVFLVDCADHERLLESKEELDSLMTDETI 112
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
A+ P+LILGNKID+ A SEE +R+ FGLYG TTGK + E++ RP+E+FMCSVL RQ
Sbjct: 113 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQ 172
Query: 236 GYGDGFRWLANYID 249
GYG+GFRW+A YID
Sbjct: 173 GYGEGFRWMAQYID 186
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 84.4 bits (207), Expect = 5e-21
Identities = 79/181 (43%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
GKLLFLGLDNAGKTTLLHMLK+DRLA PT HPT + F + + R
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL--AIGNIKFTTFDLGGHIQAR 58
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
+ IVFLVD +D ERF+E++ EL L L P +ILGNK
Sbjct: 59 RLWKDY--------FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 110
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
ID A SE E+R GL T + RP+E+FMCSV+MR GY + F+WL+
Sbjct: 111 IDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
Query: 247 Y 247
Y
Sbjct: 166 Y 166
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 75.8 bits (185), Expect = 1e-17
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ ++L LGLDNAGKTTLL L + ++ PT + + ++ R
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
+ +++++D++DR+RFEE+ EL LL +E L+ PVLI
Sbjct: 75 PYWRSYFENTDI----------LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
NK D AA EI + L+ + R ++ CS L +G DG W+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWV 172
Query: 245 ANYI 248
+
Sbjct: 173 CKNV 176
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 75.8 bits (185), Expect = 1e-17
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
+ L K ++L LGLD AGKTT+L+ L+ + PT+ +
Sbjct: 7 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK----NLK 62
Query: 116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
+ + D + ++++F+VD++D++R + EL +L +E L
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYA------DTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 116
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
+L+ NK D+ GA S E+ + L E+ R + S + +
Sbjct: 117 QDAALLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGE 164
Query: 236 GYGDGFRWLANYI 248
G +G WL + I
Sbjct: 165 GITEGLDWLIDVI 177
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 73.1 bits (178), Expect = 1e-16
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
K ++L LGLD AGKTT+L+ LK + +PT+ + V V+ V
Sbjct: 8 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--TYKNVKFNVWDVGG 65
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
D+ R ++F+VD +DR+R +E++ EL ++ D + +L
Sbjct: 66 QDKIRPLWRHYYTGT--------QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 117
Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241
I NK D A EI++ GL + + R + G +G
Sbjct: 118 IFANKQDLPDAMKPHEIQEKLGL------------TRIRDRNWYVQPSCATSGDGLYEGL 165
Query: 242 RWLANYI 248
WL +
Sbjct: 166 TWLTSNY 172
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 72.9 bits (178), Expect = 3e-16
Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 6/148 (4%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
++ + +LL LG +GK+T++ ++ V T ++
Sbjct: 2 VYRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
+R ++ + +++ ++ + +S + + + + R +E+ + + + + L + V+
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 182 ILGNKIDKHGA---ASEEEIRQYFGLYG 206
+ NK D A + +I YF +
Sbjct: 119 LFLNKQDLLAEKVLAGKSKIEDYFPEFA 146
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 71.6 bits (174), Expect = 3e-16
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 22/184 (11%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ +LL LGLDNAGKTT+L + + PTL + + ++ S R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
+ ++++VD++DR+R ++ + ELQ LL +E LA +LI
Sbjct: 61 SYWRNYFESTDG----------LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 110
Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
NK D GA S I++ L + + CS + + G WL
Sbjct: 111 NKQDLPGALSCNAIQEALELDSIR------------SHHWRIQGCSAVTGEDLLPGIDWL 158
Query: 245 ANYI 248
+ I
Sbjct: 159 LDDI 162
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 72.0 bits (175), Expect = 6e-16
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWK-DYFPAVDAIVFLVDTSDRER 126
+LF+GL ++GKT L L + ++ + ++K + + + + R
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLLTDESL--ASCPVLIL 183
F+ A ++VF+VD++ +R ++ L +L D S +LI
Sbjct: 62 FQLLDRFKSS-------ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114
Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
NK D A S + I+Q L T + S + L ++G F
Sbjct: 115 CNKQDIAMAKSAKLIQQQ--LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQ 172
Query: 244 LANYID 249
L ++
Sbjct: 173 LPLKVE 178
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 69.3 bits (168), Expect = 3e-15
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
Query: 62 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
+ K++ +GLDNAGKTT+L+ + V PT + + + D
Sbjct: 11 FNHQEHKVIIVGLDNAGKTTILYQFSMNE----VVHTSPTIGSNVEEIVINNTRFLMWDI 66
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
+E S + ++ +VD++DRER ++ EL +L E L +L
Sbjct: 67 GGQESLRSSWNTYYT------NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120
Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241
I NK D + EI Q+ L + + + C L +G G
Sbjct: 121 IFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEGLCQGL 168
Query: 242 RWLANYI 248
W+ + +
Sbjct: 169 EWMMSRL 175
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 65.1 bits (157), Expect = 1e-13
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 22/181 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
++L +GLD AGKTT+L+ LK + +PT+ V + + V+ V D+ R
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
++F+VD++DRER E++ EL +L ++ L +L+ NK
Sbjct: 60 LWRHYFQNT--------QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D A + EI GL+ + R + G +G WL+N
Sbjct: 112 DLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
Query: 248 I 248
+
Sbjct: 160 L 160
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 63.2 bits (152), Expect = 4e-13
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ +L +GL +GKTT ++++ + + PT + + L D +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQ---FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQ 57
Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
RF ++ IV++VD +D+E+ E SK+EL LL L PVL+LG
Sbjct: 58 PRFRSMWERYCRGVSA------IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 111
Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
NK D GA E+E+ + L S + R I + S + +WL
Sbjct: 112 NKRDLPGALDEKELIEKMNL------------SAIQDREICCYSISCKEKDNIDITLQWL 159
Query: 245 ANYI 248
+
Sbjct: 160 IQHS 163
Score = 39.3 bits (90), Expect = 1e-04
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLF 71
+ +L +GL +GKTT ++++ + + +PT+ + + + KL
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 53
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 60.1 bits (144), Expect = 6e-12
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 22/185 (11%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
T+ ++L LGLD AGKTT+L+ L+ + +PT+ + + F V
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG-----FNVETVTYKNLKFQVWDLG 57
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
TD + ++VD+ DR+R SKSEL +L +E L +++
Sbjct: 58 GLTSIRPYWRCYYSNTDAVI-----YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 112
Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
NK D A + E+ G + R ++F S G + W
Sbjct: 113 ANKQDMEQAMTSSEMANSLG------------LPALKDRKWQIFKTSATKGTGLDEAMEW 160
Query: 244 LANYI 248
L +
Sbjct: 161 LVETL 165
Score = 41.6 bits (96), Expect = 2e-05
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPI 56
T+ ++L LGLD AGKTT+L+ L+ + +PT+
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN 40
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 54.4 bits (130), Expect = 7e-10
Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 23/182 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
KLL +G GKT +L +D + + T+ ++ + + DT+ +ER
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F + A I+ + D ++ + F+ ++ ++ + S +++
Sbjct: 68 FRTITTAYY------RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
+E + I+ S + F LA
Sbjct: 122 DVNDKRQVSKERGEKL----------------ALDYGIKFMETSAKANINVENAFFTLAR 165
Query: 247 YI 248
I
Sbjct: 166 DI 167
Score = 41.7 bits (97), Expect = 2e-05
Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 20/130 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
KLL +G GKT +L +D + + T+ + ++ D AG+
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
R + Y+ I+ + D ++ + F+ ++ ++ +
Sbjct: 68 F-------------------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108
Query: 142 SLASSIVFLV 151
S + L
Sbjct: 109 SADVEKMILG 118
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 54.3 bits (129), Expect = 1e-09
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 9/135 (6%)
Query: 69 LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
++ G N+GKT+LL +L D + V + P D + + +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSG----VTLVDFPGHVKLRY 61
Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ---CLLTDESLASCPVLILGN 185
+ L+ +V D ++ + L + +LI N
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTV--DPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 186 KIDKHGAASEEEIRQ 200
K + A +I+
Sbjct: 120 KSELFTARPPSKIKD 134
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 54.1 bits (129), Expect = 1e-09
Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 15/129 (11%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
K+L LG +GK+T L ++ PT + K++ +G
Sbjct: 4 KILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVG--------- 52
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
+ + + + L++ R ES + + ++ +
Sbjct: 53 ----GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 108
Query: 143 LASSIVFLV 151
++ + L
Sbjct: 109 FSNVSIILF 117
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 53.0 bits (126), Expect = 3e-09
Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 5/139 (3%)
Query: 65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ KLL LG +GK+T++ +K + S+R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
+++ + ++ +L+ + L + + R ES + ++ +++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 185 N-KIDKHGAASEEEIRQYF 202
N K + + +
Sbjct: 117 NKKDLFEEKIKKSPLTICY 135
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 51.7 bits (123), Expect = 5e-09
Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 28/184 (15%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K+L +G GK+ LL +D+ + T+ ++ + + DT+ +ER
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
Query: 127 FEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
F +T A I+ + D +D F K + + + + +L+
Sbjct: 64 FRT--------ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115
Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
+ + ++ G I S + F L
Sbjct: 116 KSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTL 158
Query: 245 ANYI 248
A I
Sbjct: 159 AKLI 162
Score = 46.3 bits (109), Expect = 4e-07
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 20/108 (18%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
K+L +G GK+ LL +D+ + T+ + K+ D AG+
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
R + Y+ I+ + D +D F
Sbjct: 64 F-------------------RTITTAYYRGAMGIILVYDITDERTFTN 92
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 49.6 bits (117), Expect = 5e-08
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
+ KLL LG +GK+T + ++ VPT I L + +++ +G
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVG------ 53
Query: 80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT 139
+ + LV++ + R EESK+ + ++T
Sbjct: 54 -------GQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 106
Query: 140 DESLASSIVFLV 151
+S V L
Sbjct: 107 YPWFQNSSVILF 118
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 49.4 bits (117), Expect = 1e-07
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 13/139 (9%)
Query: 68 KLLFLGLDNAGKTTLLHML----KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
+ G +GK++ ++ L ++ A + T P V D
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPG 116
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
L F++ ++ RF+++ ++ ++ +
Sbjct: 117 IGSTNFPPDT---YLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMM---KKEFYFV 168
Query: 184 GNKIDKHGAASEEEIRQYF 202
K+D + Q F
Sbjct: 169 RTKVDSDITNEADGEPQTF 187
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 47.9 bits (113), Expect = 1e-07
Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 26/184 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV--DTSDRE 125
K++ +G GKT LL KD V L DT+ +E
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
RF + ++ A +++ D +++ F+ ++ L + +L+
Sbjct: 68 RF----RSVTHAYYRDAHALLLLY--DVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121
Query: 186 KID-KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
E+ + YG + S F +
Sbjct: 122 VDSAHERVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVDLAFTAI 164
Query: 245 ANYI 248
A +
Sbjct: 165 AKEL 168
Score = 32.9 bits (74), Expect = 0.016
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K++ +G GKT LL KD
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGA 30
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 47.9 bits (113), Expect = 2e-07
Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 23/182 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSDRER 126
K+L +G GK++LL DD + K A + + DT+ +ER
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F L + ++ + D + R+ F + + L L T + +++GNK
Sbjct: 69 F----RTLTPSYYRGAQG--VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 122
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
IDK + F + S G F L
Sbjct: 123 IDKENREVDRNEGLKF----------------ARKHSMLFIEASAKTCDGVQCAFEELVE 166
Query: 247 YI 248
I
Sbjct: 167 KI 168
Score = 35.2 bits (80), Expect = 0.003
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 20/140 (14%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
K+L +G GK++LL DD + T+ + K D AG+
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
R + Y+ ++ + D + R+ F + + L L T
Sbjct: 69 F-------------------RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 109
Query: 142 SLASSIVFLVDTSDRERFEE 161
+ + LV + E
Sbjct: 110 TRNDIVNMLVGNKIDKENRE 129
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 47.6 bits (112), Expect = 2e-07
Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 23/182 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSDRER 126
K++ +G GK+ LL + + + + DT+ +ER
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
+ + ++ + +V+ D + +E + L+ L D + ++ ++++GNK
Sbjct: 66 Y----RRITSAYYRGAVGALLVY--DIAKHLTYENVERWLKELR-DHADSNIVIMLVGNK 118
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
D + + + S L + F+ +
Sbjct: 119 SDLRHLRAVPTDEAR---------------AFAEKNNLSFIETSALDSTNVEEAFKNILT 163
Query: 247 YI 248
I
Sbjct: 164 EI 165
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 46.5 bits (109), Expect = 4e-07
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 25/184 (13%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K++ LG GK+ L + PT + VD+ +++ D
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTG---TFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
E+ S + + + + +++ F++ K ++ + PV+++GNK+
Sbjct: 62 EQFASMRDLYIKNGQ---GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118
Query: 188 D--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
D S E R +G S + + F +
Sbjct: 119 DLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSKTMVDELFAEIV 161
Query: 246 NYID 249
++
Sbjct: 162 RQMN 165
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 46.0 bits (108), Expect = 6e-07
Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVF-LVDTSDRER 126
K + +G GK+ LLH + + P + + I + DT+ +ER
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F + A+ + + D + R + S L + + + ++++GNK
Sbjct: 66 F----RAVTRSYYRG--AAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNK 118
Query: 187 ID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
D + EE +Q+ G + S + D F
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENG-----------------LLFLEASAKTGENVEDAFLEA 161
Query: 245 ANYI 248
A I
Sbjct: 162 AKKI 165
Score = 39.1 bits (90), Expect = 1e-04
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 18/143 (12%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
K + +G GK+ LLH + + P + + SG+ + K +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI--------KLQI 57
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
+R R V + Y+ + + D + R + S L +
Sbjct: 58 WDTAGQERF----------RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 107
Query: 143 LASSIVFLVDTSDRERFEESKSE 165
+ I+ + + +D E + E
Sbjct: 108 PNTVIILIGNKADLEAQRDVTYE 130
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 45.6 bits (107), Expect = 7e-07
Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 27/184 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVF-LVDTSDRER 126
K+L +G + GKT+ L DD + K + I + DT+ +ER
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 127 FEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
+ +T A + + D ++ E F + + S + VL++G
Sbjct: 67 YRT--------ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVG 117
Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
NK D R E F S F L
Sbjct: 118 NKCDMEDERVVSSERGR---------------QLADHLGFEFFEASAKDNINVKQTFERL 162
Query: 245 ANYI 248
+ I
Sbjct: 163 VDVI 166
Score = 37.2 bits (85), Expect = 6e-04
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 24/117 (20%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
K+L +G + GKT+ L DD + + + K KL D AG+
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI--WDTAGQ 64
Query: 80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
R + Y+ + + D ++ E F +
Sbjct: 65 ERY-------------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 45.3 bits (106), Expect = 1e-06
Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 25/183 (13%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K++ +G GK+ L D + K + + ++DT+ +E +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK- 186
+ + ++ E F + + +L + + P L++GNK
Sbjct: 66 A------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 187 -IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
++ S EE + + + S R F L
Sbjct: 120 DLEDKRQVSVEEAKNRADQWN-----------------VNYVETSAKTRANVDKVFFDLM 162
Query: 246 NYI 248
I
Sbjct: 163 REI 165
Score = 32.6 bits (73), Expect = 0.024
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K++ +G GK+ L D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDE 28
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 44.9 bits (105), Expect = 1e-06
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 23/182 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K L +G GK+ LLH + + T+ + + DT+ +ER
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F A+ + + D + RE + + L S + +++ GNK
Sbjct: 67 FRSVTRSYYRG------AAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNK 119
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
D + + S L + + F A
Sbjct: 120 KDLDADREVTFLEAS---------------RFAQENELMFLETSALTGENVEEAFVQCAR 164
Query: 247 YI 248
I
Sbjct: 165 KI 166
Score = 39.1 bits (90), Expect = 1e-04
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 20/108 (18%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTT 81
K L +G GK+ LLH + + + + GK + L + D AG+
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
R V + Y+ + + D + RE +
Sbjct: 67 F-------------------RSVTRSYYRGAAGALLVYDITSRETYNA 95
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 43.8 bits (102), Expect = 4e-06
Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 21/183 (11%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K++ LG GK++L++ ++ Q T+ + + DT+ +ER
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F +S + D+ + K E + S P +ILGNK
Sbjct: 68 F---RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 124
Query: 187 IDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
ID S EE + + G F S F
Sbjct: 125 IDISERQVSTEEAQAWCRDNGD----------------YPYFETSAKDATNVAAAFEEAV 168
Query: 246 NYI 248
+
Sbjct: 169 RRV 171
Score = 32.2 bits (72), Expect = 0.028
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K++ LG GK++L++ ++
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNK 30
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 43.1 bits (100), Expect = 6e-06
Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 9/181 (4%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K + +G GKT LL + + L DT+ +E +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + FE +++ + + P++++G K+
Sbjct: 67 D------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 119
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D E + L +T + E+ ++ CS L ++G F
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALTQRGLKTVFDEAIRA 177
Query: 248 I 248
+
Sbjct: 178 V 178
Score = 31.1 bits (69), Expect = 0.074
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K + +G GKT LL +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNA 29
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 42.3 bits (98), Expect = 1e-05
Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 11/179 (6%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K + +G GKT LL ++ ++ VPT+ V + DT+ +E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL-FDTAGQED 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
++ + FE K E P L++G +
Sbjct: 64 YDR------LRPLSYPQTDVFLVCFSVVSPSSFENVK-EKWVPEITHHCPKTPFLLVGTQ 116
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
ID S E +T ++ CS L ++G + F
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY--VECSALTQKGLKNVFDEAI 173
Score = 30.7 bits (68), Expect = 0.093
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTL 53
K + +G GKT LL ++ ++ VPT+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 41.9 bits (97), Expect = 2e-05
Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 23/182 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPA-VDAIVFLVDTSDRER 126
K++ LG GKT+L+ +++ T + K + + DT+ +ER
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F L + +S + +V+ D +D + F++ K+ ++ L C ++
Sbjct: 65 F----HALGPIYYRDSNGAILVY--DITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 118
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
+ + + + + + S +G + F L
Sbjct: 119 DLEKERHVSIQEAESY----------------AESVGAKHYHTSAKQNKGIEELFLDLCK 162
Query: 247 YI 248
+
Sbjct: 163 RM 164
Score = 36.1 bits (82), Expect = 0.001
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 18/114 (15%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
K++ LG GKT+L+ +++ T GK +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK------------RV 52
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
+ D + Y+ + + + D +D + F++ K+ ++
Sbjct: 53 NLAIWDT------AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 100
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 41.9 bits (97), Expect = 2e-05
Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 22/181 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
KL+ +G GK+ L L + + ++ ++DT+ +E +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + + ++ + FE+ + + + P++++GNK
Sbjct: 65 SAMRDQYMRTGE------GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D E Q I S RQG D F L
Sbjct: 119 DLAARTVESRQAQDL----------------ARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 248 I 248
I
Sbjct: 163 I 163
Score = 30.3 bits (67), Expect = 0.13
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ +G GK+ L L +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNH 27
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 41.8 bits (97), Expect = 2e-05
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 20/115 (17%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
KLL +G GK+ LL DD + T+ + + D AG+
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
R + Y+ I+ + D +D+E F K LQ
Sbjct: 68 F-------------------RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE 103
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 41.2 bits (95), Expect = 3e-05
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K++ +G N GKT L + R + T+ R + L DT+ +ER
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F +S + + F+ D ++ F + ++ P +++GNK
Sbjct: 64 FRKSMVQHYYRNVHAVV-----FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 118
Query: 187 IDKH 190
D
Sbjct: 119 CDLR 122
Score = 35.8 bits (81), Expect = 0.002
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K++ +G N GKT L + R
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGR 26
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 40.4 bits (93), Expect = 6e-05
Identities = 31/182 (17%), Positives = 54/182 (29%), Gaps = 16/182 (8%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K++ LG GKT+L+H +D+ Q T+ + V + +
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
+S D + V + + + + + S + P +ILGNK
Sbjct: 64 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILGNK 121
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
ID + + S I LF+ S F +A
Sbjct: 122 IDAEESKKIVSEKSAQ-------------ELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 168
Query: 247 YI 248
Sbjct: 169 SA 170
Score = 34.7 bits (78), Expect = 0.005
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K++ LG GKT+L+H +D+
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDK 26
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 39.7 bits (91), Expect = 9e-05
Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 20/182 (10%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
KL+ LG GK++++ + PT+ + + DT+ +ER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F L + +V + + L +++ + ++GNK
Sbjct: 65 FA-------SLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
ID E ++ + + + F S + D F +
Sbjct: 118 IDMLQEGGERKVARE------------EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
Query: 247 YI 248
I
Sbjct: 166 KI 167
Score = 33.1 bits (74), Expect = 0.018
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ LG GK++++ +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSND 27
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 39.6 bits (91), Expect = 1e-04
Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 27/184 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
KL+FLG + GKT+L+ D T+ Y + L DT+ +ER
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F V + D ++ F+++ + + T+ + ++++GNK
Sbjct: 62 FRSLIPSYIRDSAA------AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNK 114
Query: 187 ID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
D S EE + + S FR +
Sbjct: 115 TDLADKRQVSIEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRV 157
Query: 245 ANYI 248
A +
Sbjct: 158 AAAL 161
Score = 32.6 bits (73), Expect = 0.020
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+FLG + GKT+L+ D
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDS 24
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 39.5 bits (91), Expect = 1e-04
Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 40/196 (20%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTL-----HPTRRVWKDYFPAVDAIVFLV-- 119
KLL LG GKTT L+ D++ + + T+ F V
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66
Query: 120 ---DTSDRERFEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDES 174
DT+ +ERF LT A + + D + ++ F ++ + L +
Sbjct: 67 QLWDTAGQERFRS--------LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 118
Query: 175 LASCPVLILGN--KIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL 232
+ ++++GN + +E + R+ YG I F S
Sbjct: 119 CENPDIVLIGNKADLPDQREVNERQARELADKYG-----------------IPYFETSAA 161
Query: 233 MRQGYGDGFRWLANYI 248
Q L + I
Sbjct: 162 TGQNVEKAVETLLDLI 177
Score = 35.6 bits (81), Expect = 0.003
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 8/137 (5%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KLL LG GKTT L+ D++ T I + + A K L
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
R + +F + + D + ++ F ++ + L +
Sbjct: 67 QL--------WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 118
Query: 143 LASSIVFLVDTSDRERF 159
+ + L+
Sbjct: 119 CENPDIVLIGNKADLPD 135
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 39.3 bits (90), Expect = 2e-04
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 7/121 (5%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K++ +G GKT LLH+ D PT +D + D
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 60
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + +++ D S E + + + + + + +L++G K
Sbjct: 61 PYYDNVRPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKS 116
Query: 188 D 188
D
Sbjct: 117 D 117
Score = 32.7 bits (73), Expect = 0.025
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLH 54
K++ +G GKT LLH+ D VPT+
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 36
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 39.2 bits (90), Expect = 2e-04
Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K + +G GKT LL +D + ++ L DT+ +E +
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + + + F+ K E L E + P L++G +I
Sbjct: 71 D------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGTQI 123
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D + + E+ CS L ++G F
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEI--GACCYVECSALTQKGLKTVFDEAIIA 181
Query: 248 I 248
I
Sbjct: 182 I 182
Score = 30.7 bits (68), Expect = 0.11
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K + +G GKT LL +D
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDA 33
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 38.8 bits (89), Expect = 2e-04
Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 28/185 (15%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
++ G GK++L+ +PT+ T R ++ + T +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-LASCPVLILGN 185
+ + + + + + R+ EE K + + + + S P++++GN
Sbjct: 64 PAMQRLSISK-------GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 116
Query: 186 KI--DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
K E + S + + F+
Sbjct: 117 KCDESPSREVQSSEAEALARTWK-----------------CAFMETSAKLNHNVKELFQE 159
Query: 244 LANYI 248
L N
Sbjct: 160 LLNLE 164
Score = 31.9 bits (71), Expect = 0.039
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
++ G GK++L+
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGT 26
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 38.9 bits (89), Expect = 2e-04
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 27/184 (14%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
KL+ LG GK++L+ + T+ + DT+ +ER
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 127 FEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
+ L A + + + D ++ E F +K+ ++ L S + + + G
Sbjct: 68 Y--------HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSG 118
Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
NK D + + + S + F +
Sbjct: 119 NKADLANKRAVDFQEAQS---------------YADDNSLLFMETSAKTSMNVNEIFMAI 163
Query: 245 ANYI 248
A +
Sbjct: 164 AKKL 167
Score = 33.5 bits (75), Expect = 0.010
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ LG GK++L+ +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQ 30
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 38.6 bits (89), Expect = 2e-04
Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 23/182 (12%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K++ +G GKT L+ T+ + + + DT+ +ER
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
F + + +++ + L E E + + +++GNK
Sbjct: 67 F-------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
ID + R + + S F LA
Sbjct: 120 IDLAERREVSQQRAE---------------EFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
Query: 247 YI 248
+
Sbjct: 165 RL 166
Score = 33.2 bits (75), Expect = 0.012
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAG 78
K++ +G GKT L+ + + +G+ + L + D AG
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 37.6 bits (86), Expect = 5e-04
Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 20/144 (13%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
K + +G GK+ LL D R T+ G + ++ D AG+
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ-- 62
Query: 82 LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
R + + Y+ + + D + RE F S L+
Sbjct: 63 -----------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS 105
Query: 142 SLASSIVFLVDTSDRERFEESKSE 165
S I+ + + SD E + K E
Sbjct: 106 SSNMVIMLIGNKSDLESRRDVKRE 129
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 37.3 bits (85), Expect = 5e-04
Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 24/181 (13%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
KL+ +G GKTT + + + + P V +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEK-----KYVATLGVEVHPLVFHTNRGPIKFNVWDT 59
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ L D + ++ R + P+++ GNK+
Sbjct: 60 AGQEK--FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 117
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D + + + ++ + S + F WLA
Sbjct: 118 DIKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARK 160
Query: 248 I 248
+
Sbjct: 161 L 161
Score = 33.9 bits (76), Expect = 0.008
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ +G GKTT +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGE 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 36.6 bits (83), Expect = 0.001
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 21/181 (11%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
KL+ +G GK+ L + A + ++DT+ +E F
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 67
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + + +DR+ F E +L + PV+++GNK
Sbjct: 68 GAMREQYMR------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 121
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D + + F S +R + F L
Sbjct: 122 DLESQRQVPRSEASA---------------FGASHHVAYFEASAKLRLNVDEAFEQLVRA 166
Query: 248 I 248
+
Sbjct: 167 V 167
Score = 31.9 bits (71), Expect = 0.037
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ +G GK+ L
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSY 30
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 36.6 bits (83), Expect = 0.001
Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 25/185 (13%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K++ LG GKT+L++ + + Q T+ + + + DT+ +ER
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC---PVLIL 183
F+ A V + D + F+ S L S P ++L
Sbjct: 64 FQSLGVAFYR------GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 117
Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
GNKID + Q + S I F S F+
Sbjct: 118 GNKIDLENRQVATKRAQAW---------------CYSKNNIPYFETSAKEAINVEQAFQT 162
Query: 244 LANYI 248
+A
Sbjct: 163 IARNA 167
Score = 34.3 bits (77), Expect = 0.007
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K++ LG GKT+L++ + +
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKK 26
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 35.8 bits (81), Expect = 0.002
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 11/179 (6%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
KL+ +G GKT LL + D+ VPT+ + + +
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 63
Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
+ ++ + + D E+ E + P++++GNK
Sbjct: 64 DRLRPLSYPD--------TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 115
Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
D + + + + CS + G + F
Sbjct: 116 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEMAT 172
Score = 32.3 bits (72), Expect = 0.030
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ +G GKT LL + D+
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKDQ 26
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 35.0 bits (79), Expect = 0.003
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 6/121 (4%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
KL+ +G GK+ L VP PT +D ++D D
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIF---VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 62
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
EE + + + + +D+ FE Q +L + S P++++ NK+
Sbjct: 63 EEFSAMREQ---YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119
Query: 188 D 188
D
Sbjct: 120 D 120
Score = 30.4 bits (67), Expect = 0.12
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
KL+ +G GK+ L
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKI 28
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 34.7 bits (78), Expect = 0.004
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDR 45
+KS K+ LG + GK++L + +
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQ 28
Score = 34.7 bits (78), Expect = 0.004
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDR 90
+KS K+ LG + GK++L + +
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQ 28
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 35.2 bits (80), Expect = 0.004
Identities = 10/127 (7%), Positives = 38/127 (29%), Gaps = 6/127 (4%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
+L +G GK++ ++ + +R+ P ++ I
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL-TDESLASCPVLI 182
+ + + ++ L D+++ ++++ K + + + ++
Sbjct: 94 GYINDMALNIIKSFLLDKTI-DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152
Query: 183 LGNKIDK 189
Sbjct: 153 ALTHAQF 159
Score = 26.3 bits (57), Expect = 3.2
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLA 47
+L +G GK++ ++ + +R+
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVV 58
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 34.7 bits (78), Expect = 0.004
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYF 109
K+L LG GK+ L + T
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD 44
Score = 34.3 bits (77), Expect = 0.006
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 52
K+L LG GK+ L +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEA 32
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 34.3 bits (77), Expect = 0.007
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 10/165 (6%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT-- 121
+ G + +G N GK+TLL+ L +++ TR VDT
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 122 -SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180
E+ ++ + + ++F+V+ + +E +L PV
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDE------MVLNKLREGKAPV 116
Query: 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
++ NK+D ++ F + + P S +G ++
Sbjct: 117 ILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV-PISAETGLNVD 160
Score = 32.4 bits (72), Expect = 0.030
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 10/118 (8%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
+ G + +G N GK+TLL+ L +++ + G + +D G
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 79 KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
+ + V+ ++F+V+ + +E
Sbjct: 63 LHMEEKRAIN----------RLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLR 110
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 33.9 bits (76), Expect = 0.008
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFL 72
K++ +G GK++++ + + + + + L
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 53
Score = 33.9 bits (76), Expect = 0.009
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR 90
K++ +G GK++++
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGI 26
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.9 bits (76), Expect = 0.009
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA 47
T SG + +G N GK+TLL+ L ++A
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA 31
Score = 33.9 bits (76), Expect = 0.009
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA 92
T SG + +G N GK+TLL+ L ++A
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA 31
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 33.4 bits (75), Expect = 0.012
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
K+ LG GK++++ +D PT+ + + + DT+ ER
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65
Query: 127 F 127
F
Sbjct: 66 F 66
Score = 33.1 bits (74), Expect = 0.016
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
K+ LG GK++++ +D
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDS 28
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 33.0 bits (74), Expect = 0.014
Identities = 22/181 (12%), Positives = 49/181 (27%), Gaps = 20/181 (11%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
KL+ LG GK+ L + + ++ ++DT+ E+F
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + + F + + + +L + P++++GNK
Sbjct: 65 TAMRDLYMK------NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D + + S + + F L
Sbjct: 119 DLEDERVVGKEQGQ--------------NLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 248 I 248
I
Sbjct: 165 I 165
Score = 31.9 bits (71), Expect = 0.040
Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 19/157 (12%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
KL+ LG GK+ L V P + D+ K
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIE----------------DSYRKQVE 45
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
+ + + Y + + + F + + + +L +
Sbjct: 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
Query: 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
+ LV E + Q +C
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA 142
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 32.6 bits (73), Expect = 0.018
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT----SD 123
+++ +G N GK+TLL+ L ++ A TR V + + +VDT S+
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC 168
E + L E A ++F++D S E+ K +
Sbjct: 62 TNDLVERLGIERTLQEIEK-ADIVLFVLDASSPLDEEDRKILERI 105
Score = 29.2 bits (64), Expect = 0.31
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLA 47
+++ +G N GK+TLL+ L ++ A
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRA 26
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 32.3 bits (72), Expect = 0.028
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDY 108
KL G GK+ L+ R + + PTL T R
Sbjct: 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI 45
Score = 31.1 bits (69), Expect = 0.077
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHP 55
KL G GK+ L+ R + + PTL
Sbjct: 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 37
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 32.4 bits (72), Expect = 0.028
Identities = 23/130 (17%), Positives = 45/130 (34%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K++ G NAGK++LL+ L A TR V +++ + ++DT+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
+ + + + + L +E+ A P+ ++ NK
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 188 DKHGAASEEE 197
D G
Sbjct: 123 DITGETLGMS 132
Score = 30.1 bits (66), Expect = 0.15
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLA 47
K++ G NAGK++LL+ L A
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAA 27
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 32.3 bits (72), Expect = 0.030
Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 1/138 (0%)
Query: 71 FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD-RERFEE 129
+G NAGK++LL + + + L D E E
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65
Query: 130 SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189
K L + +++++D +D + D +L P L+ NK+D
Sbjct: 66 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125
Query: 190 HGAASEEEIRQYFGLYGL 207
+ + + GL
Sbjct: 126 LEEEAVKALADALAREGL 143
Score = 31.5 bits (70), Expect = 0.062
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 26 FLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLW 63
+G NAGK++LL + P TL P LG + +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS 46
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 32.2 bits (72), Expect = 0.030
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 26 FLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLW 63
+G + GK+TLL ++ + TL P LG +
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD 46
Score = 30.7 bits (68), Expect = 0.11
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 71 FLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPTRRVWKDY 108
+G + GK+TLL ++ + TL P + +
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD 46
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.4 bits (67), Expect = 0.11
Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 25/183 (13%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
+L+ +G GK+ L V PT +D +D D
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYF---VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ 63
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK- 186
EE + + + + + +DR FEE + +L + P++++GNK
Sbjct: 64 EEFGAMREQYMRTGEG---FLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120
Query: 187 -IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
+D ++EE +Q + S +R F L
Sbjct: 121 DLDHQRQVTQEEGQQLARQLK-----------------VTYMEASAKIRMNVDQAFHELV 163
Query: 246 NYI 248
I
Sbjct: 164 RVI 166
Score = 29.6 bits (65), Expect = 0.26
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
+L+ +G GK+ L
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSY 29
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 30.3 bits (67), Expect = 0.17
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 20 KSGKLL-FLGLDNAGKTTLLHMLKD 43
+ G L+ G+D AGK+T L +
Sbjct: 1 RRGALIVLEGVDRAGKSTQSRKLVE 25
Score = 30.3 bits (67), Expect = 0.17
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 65 KSGKLL-FLGLDNAGKTTLLHMLKD 88
+ G L+ G+D AGK+T L +
Sbjct: 1 RRGALIVLEGVDRAGKSTQSRKLVE 25
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.9 bits (66), Expect = 0.18
Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 8/180 (4%)
Query: 25 LFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH 84
+ G+ G TT + D+ + V G + + L D K
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 64
Query: 85 MLKDDRLA-QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL-TDES 142
+ ++A + + + V D V + E +L ++ T
Sbjct: 65 QKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGD 124
Query: 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLAS------CPVLILGNKIDKHGAASEE 196
+T R+ S E + + S V I+ N+ A EE
Sbjct: 125 EILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEE 184
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 30.1 bits (66), Expect = 0.18
Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 22/184 (11%)
Query: 71 FLGLDNAGKTTLLHML-KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
G N GK++ ++ L LA+ T+ + V + + +
Sbjct: 28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKS 87
Query: 130 SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189
+ ++ + V R S ++Q + PV+++ K DK
Sbjct: 88 EREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YGIPVIVIATKADK 146
Query: 190 ----HGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
+ +RQ + EL + S ++G + + +
Sbjct: 147 IPKGKWDKHAKVVRQTLNIDP----------------EDELILFSSETKKGKDEAWGAIK 190
Query: 246 NYID 249
I+
Sbjct: 191 KMIN 194
Score = 26.3 bits (56), Expect = 3.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 26 FLGLDNAGKTTLLHMLKDDR 45
G N GK++ ++ L + +
Sbjct: 28 LAGRSNVGKSSFINSLINRK 47
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.0 bits (66), Expect = 0.20
Identities = 32/232 (13%), Positives = 57/232 (24%), Gaps = 40/232 (17%)
Query: 9 TGVLGYLGLWTKSGKLLFLGLDNAGKTTL----LHMLKDDRLAQPVPTLHPILGYLG--- 61
+G G +GKTTL L+D+ V L + L
Sbjct: 3 VVFVGTAG---------------SGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEP 46
Query: 62 ------LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
T + N L + DY +D
Sbjct: 47 SIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF--NEYLNKILRLEKENDYV-LIDTP 103
Query: 116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
+ E L + +V++ D ++ + L +
Sbjct: 104 GQMETFLFHEFGVR--------LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR 155
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELF 227
+ NK+D +E R+YF T ++ S ++
Sbjct: 156 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMC 207
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 29.9 bits (66), Expect = 0.25
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 67 GKLL-FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102
GKL+ GLD GKTT ++L P R
Sbjct: 3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPER 39
Score = 29.1 bits (64), Expect = 0.41
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 22 GKLL-FLGLDNAGKTTLLHMLKDDRLAQPVPTLHP 55
GKL+ GLD GKTT ++L P
Sbjct: 3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP 37
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.6 bits (65), Expect = 0.28
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 8/109 (7%)
Query: 26 FLGLDNAGKTTLLHMLKDDRLAQPVPTLH--------PILGYLGLWTKSGKLLFLGLDNA 77
G+D AGK TL+ L A + + G+ L
Sbjct: 5 IEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVY 64
Query: 78 GKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
TL + + + V D + A +A +
Sbjct: 65 AMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAA 113
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.3 bits (64), Expect = 0.30
Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 18/181 (9%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
+++ +G GK+TL ++ + Y + + +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDS---DCEVLGEDTYERTLMVDGESATIILLDMW 61
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
E + + + + +DR FE++ L P++++GNK
Sbjct: 62 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
D + + S ++ + F +
Sbjct: 122 DLVRCREVSVSEGR---------------ACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 166
Query: 248 I 248
+
Sbjct: 167 V 167
Score = 29.3 bits (64), Expect = 0.32
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
+++ +G GK+TL ++
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVH 27
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 29.1 bits (64), Expect = 0.34
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 67 GKLL-FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR 102
K + GL+ AGKTT +++ + + + TR
Sbjct: 2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 38
Score = 28.0 bits (61), Expect = 0.80
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 22 GKLL-FLGLDNAGKTTLLHMLKD 43
K + GL+ AGKTT +++ +
Sbjct: 2 SKYIVIEGLEGAGKTTARNVVVE 24
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 29.2 bits (64), Expect = 0.35
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 22 GKLL-FLGLDNAGKTTLLHMLKD---DRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNA 77
K + G AGK+T +++LK D P P +
Sbjct: 2 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTM---SQKN 58
Query: 78 GKTTLLHMLKD 88
G L M +
Sbjct: 59 GGNVLQMMYEK 69
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 29.4 bits (65), Expect = 0.37
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 27 LGLDNAGKTTLLHMLKDDRLAQ----PVPTLHPILG 58
+G+ N GK+T + L P T+ P
Sbjct: 16 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA 51
Score = 27.1 bits (59), Expect = 1.9
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 72 LGLDNAGKTTLLHMLKDDRLAQ----PVPTLHP 100
+G+ N GK+T + L P T+ P
Sbjct: 16 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDP 48
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.9 bits (63), Expect = 0.44
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
K+ +G N GK+TL + + + A P TR D VDT+ R
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Score = 28.1 bits (61), Expect = 0.69
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
K+ +G N GK+TL + + + A P + ++ +D AG
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Query: 83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
+ +P + D D +V ++D + +
Sbjct: 70 SRV-------EPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ 108
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.8 bits (63), Expect = 0.45
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 12/173 (6%)
Query: 25 LFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH 84
+ G+ GK+T+L +K+ Q + G L T D K ++
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 85 MLKDD----RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD 140
K + ++ D + + E + LL
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124
Query: 141 ESL--------ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
+ ++ + + E LA V ++ N
Sbjct: 125 DPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVN 177
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 28.5 bits (62), Expect = 0.55
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 71 FLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPTRRVWKDYF 109
F G N GK+TL++ L ++ +P T WK++
Sbjct: 5 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHK 46
Score = 28.5 bits (62), Expect = 0.58
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 26 FLGLDNAGKTTLLHMLKDDRLA 47
F G N GK+TL++ L ++
Sbjct: 5 FAGRSNVGKSTLIYRLTGKKVR 26
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.4 bits (62), Expect = 0.55
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 52
+L LG +GK++L+H T
Sbjct: 7 RLGVLGDARSGKSSLIHRFLTGSYQVLEKT 36
Score = 28.4 bits (62), Expect = 0.55
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT 97
+L LG +GK++L+H T
Sbjct: 7 RLGVLGDARSGKSSLIHRFLTGSYQVLEKT 36
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.5 bits (62), Expect = 0.58
Identities = 19/181 (10%), Positives = 49/181 (27%), Gaps = 26/181 (14%)
Query: 23 KLLFLGLDNAGKTTLLHMLKD------------------------DRLAQPVPTLHPILG 58
+ LG +++GK+ L++ L P +
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68
Query: 59 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-HPTRRVWKDYFPAVDAIVF 117
+ +D TT ++ + A P +
Sbjct: 69 RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 128
Query: 118 LVDTSDRERFEESKSELQCLLTD-ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
++ + Q L + + + S +R+ + K+ ++ +L +E ++
Sbjct: 129 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEIS 188
Query: 177 S 177
Sbjct: 189 E 189
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.6 bits (62), Expect = 0.59
Identities = 9/53 (16%), Positives = 21/53 (39%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVD 120
++ F G NAGK++ L+ L + + ++ + A + +
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 70
Score = 27.1 bits (58), Expect = 1.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
++ F G NAGK++ L+ L + +
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQK 40
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.2 bits (61), Expect = 0.64
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 71 FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFP 110
+G N GK+TL + L + A TR +D
Sbjct: 5 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVE 44
Score = 27.4 bits (59), Expect = 1.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 26 FLGLDNAGKTTLLHMLKDDRLA 47
+G N GK+TL + L + A
Sbjct: 5 IVGRPNVGKSTLFNKLVKKKKA 26
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 27.9 bits (61), Expect = 1.1
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG 206
+ LVD + + ++ L + P ++L NK DK AA ++ +++F G
Sbjct: 19 VYELVDARIPMSS-------RNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQG 71
Query: 207 LTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237
+ + + + + + + + +
Sbjct: 72 IRSLSINSVNGQGLNQIVPASKEILQEKFDR 102
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 27.7 bits (60), Expect = 1.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 28 GLDNAGKTTLLHMLKD 43
G GK+T + +L
Sbjct: 9 GNIAVGKSTFVKLLTK 24
Score = 27.7 bits (60), Expect = 1.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 73 GLDNAGKTTLLHMLKD 88
G GK+T + +L
Sbjct: 9 GNIAVGKSTFVKLLTK 24
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 27 LGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILG 58
+G N GK+T + P T+ +G
Sbjct: 6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVG 40
Score = 25.7 bits (55), Expect = 6.4
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 3/72 (4%)
Query: 72 LGLDNAGKTTLLHMLKDDRLA---QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
+G N GK+T + P T+ V + +
Sbjct: 6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65
Query: 129 ESKSELQCLLTD 140
+ + + D
Sbjct: 66 NGLALIPVKMVD 77
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.2 bits (59), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 26 FLGLDNAGKTTLL-HMLKDDR 45
FLG AGKTTLL H+L +
Sbjct: 11 FLG---AGKTTLLRHILNEQH 28
Score = 27.2 bits (59), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 71 FLGLDNAGKTTLL-HMLKDDR 90
FLG AGKTTLL H+L +
Sbjct: 11 FLG---AGKTTLLRHILNEQH 28
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 2.0
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 26 FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHM 85
G + L + L + ++ H G + G GKTT H+
Sbjct: 16 VCGNKGS-VMKLKNWLANWENSKKNSFKHAGKDGSG---VFRAAMLYGPPGIGKTTAAHL 71
Query: 86 LKDDRLAQPVPTLHPTRRVWKDYFPAVDAIV 116
+ + + R V +
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNAGVKNAL 102
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 26.7 bits (58), Expect = 2.2
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 69 LLFLGLDNAGKTTLL-HMLKDDRLAQPVPTLHPTRRVWKDYF 109
+ GL +GK+TL + + V +
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL 68
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 26.9 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 25 LFLGLDNAGKTTLLH-----MLKDD 44
+F GL GKTTL ++ DD
Sbjct: 18 VFFGLSGTGKTTLSTDPERPLIGDD 42
Score = 26.9 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 70 LFLGLDNAGKTTLLH-----MLKDD 89
+F GL GKTTL ++ DD
Sbjct: 18 VFFGLSGTGKTTLSTDPERPLIGDD 42
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.9 bits (59), Expect = 2.5
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 73 GLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYF 109
G GKTT +L + + W+
Sbjct: 11 GPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLG 47
Score = 25.0 bits (54), Expect = 9.8
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 28 GLDNAGKTTLLHMLKD 43
G GKTT +L
Sbjct: 11 GPHGMGKTTTTQLLVA 26
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.4 bits (58), Expect = 2.6
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 19/68 (27%)
Query: 9 TGVLGYLGLWTKSGKLL-FLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSG 67
+ LG L ++G++L +G + AGK+TLL + G+ + G
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARM------------------AGMTSGKG 53
Query: 68 KLLFLGLD 75
+ F G
Sbjct: 54 SIQFAGQP 61
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.5 bits (57), Expect = 2.9
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 66 SGKLLFL-GLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
+ +++ L G +AGK+ ++ L+ L +P + A + +D
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQ-SVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 125 ERFEE 129
Sbjct: 61 GVSIG 65
Score = 25.8 bits (55), Expect = 5.1
Identities = 6/24 (25%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 21 SGKLLFL-GLDNAGKTTLLHMLKD 43
+ +++ L G +AGK+ ++ L+
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQS 25
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.5 bits (57), Expect = 2.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 28 GLDNAGKTTLLHMLKD 43
G +GKTT L+ +
Sbjct: 16 GNIGSGKTTYLNHFEK 31
Score = 26.5 bits (57), Expect = 2.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 73 GLDNAGKTTLLHMLKD 88
G +GKTT L+ +
Sbjct: 16 GNIGSGKTTYLNHFEK 31
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 26.3 bits (57), Expect = 3.7
Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 7/150 (4%)
Query: 69 LLFLGLDNAGKTT----LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
++ +G+ GK T L + K + R V
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGF-KVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 73
Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC--PVLI 182
++ + + + +VDT+ R + E + L+ + L+
Sbjct: 74 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLV 133
Query: 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKV 212
+ I + + Q + + K+
Sbjct: 134 IDASIGQKAYDLASKFNQASKIGTIIITKM 163
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 26.4 bits (58), Expect = 3.8
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 54 HPILGYLGLWTKSGKLL-FLGLDNAGKTTLLHML 86
+P+L + L + G++L G +GKT+LL ++
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 82
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 26.1 bits (57), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 25 LFLGLDNAGKTTLLH-----MLKDD 44
+F GL GKTTL ++ DD
Sbjct: 18 VFFGLSGTGKTTLSTDPKRRLIGDD 42
Score = 26.1 bits (57), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 70 LFLGLDNAGKTTLLH-----MLKDD 89
+F GL GKTTL ++ DD
Sbjct: 18 VFFGLSGTGKTTLSTDPKRRLIGDD 42
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.1 bits (56), Expect = 3.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 23 KLLFLGLDNAGKTTLLHML 41
K++ G GKTTL+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKI 20
Score = 26.1 bits (56), Expect = 3.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 68 KLLFLGLDNAGKTTLLHML 86
K++ G GKTTL+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKI 20
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 26.1 bits (57), Expect = 4.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 26 FLGLDNAGKTTLLHML 41
+G + AGKTT L ++
Sbjct: 33 LIGPNGAGKTTTLRII 48
Score = 26.1 bits (57), Expect = 4.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 71 FLGLDNAGKTTLLHML 86
+G + AGKTT L ++
Sbjct: 33 LIGPNGAGKTTTLRII 48
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 26.1 bits (57), Expect = 4.1
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 25 LFLGLDNAGKTTLLH-----MLKDD 44
+F GL GKTTL ++ DD
Sbjct: 18 VFFGLSGTGKTTLSADPHRNLIGDD 42
Score = 26.1 bits (57), Expect = 4.1
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 70 LFLGLDNAGKTTLLH-----MLKDD 89
+F GL GKTTL ++ DD
Sbjct: 18 VFFGLSGTGKTTLSADPHRNLIGDD 42
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 207
Score = 26.0 bits (57), Expect = 4.4
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 104 VWKDYFPAVDAIVFL----VDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR 156
+W + I L + +R E +++ LL ++ + L+
Sbjct: 1 LWDSNY-----IQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKY 52
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.7 bits (56), Expect = 4.9
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 54 HPILGYLGLWTKSGKLL-FLGLDNAGKTTLLHML 86
P+L + + + G ++ F G + GKTTLL +
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTI 47
Score = 25.3 bits (55), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 20 KSGKLL-FLGLDNAGKTTLLHML 41
+ G ++ F G + GKTTLL +
Sbjct: 25 EKGNVVNFHGPNGIGKTTLLKTI 47
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 25.6 bits (55), Expect = 5.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 67 GKLLFL-GLDNAGKTTLLHML--KDDRLAQPVPTLHPTR 102
G L + AGK++L+ L V H TR
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR 40
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 25.7 bits (55), Expect = 5.2
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 113 DAIVFLVDTS---DRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF 159
D+++FLVD S + E+ + + + + S + + +SDR+
Sbjct: 3 DSLIFLVDASKAMFESQSEDELTPFDMSI--QCIQSVYISKIISSDRDLL 50
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 25.6 bits (56), Expect = 5.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 26 FLGLDNAGKTTLLHML 41
+G + AGKTT L +
Sbjct: 37 LIGANGAGKTTTLSAI 52
Score = 25.6 bits (56), Expect = 5.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 71 FLGLDNAGKTTLLHML 86
+G + AGKTT L +
Sbjct: 37 LIGANGAGKTTTLSAI 52
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 25.7 bits (56), Expect = 5.5
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 26 FLGLDNAGKTTLLHML 41
+G + +GK+TL++++
Sbjct: 35 IIGPNGSGKSTLINVI 50
Score = 25.7 bits (56), Expect = 5.5
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 71 FLGLDNAGKTTLLHML 86
+G + +GK+TL++++
Sbjct: 35 IIGPNGSGKSTLINVI 50
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 25.3 bits (54), Expect = 5.6
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 21 SGKLLFL-GLDNAGKTTLLHML 41
G +L L G +GK+T+ L
Sbjct: 3 GGNILLLSGHPGSGKSTIAEAL 24
Score = 25.3 bits (54), Expect = 5.6
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 66 SGKLLFL-GLDNAGKTTLLHML 86
G +L L G +GK+T+ L
Sbjct: 3 GGNILLLSGHPGSGKSTIAEAL 24
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 25.0 bits (53), Expect = 7.3
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 115 IVFLVDTSD---RERFEESKSELQCLLTD 140
IVFL+D S F + ++ +++
Sbjct: 5 IVFLIDGSGSISSRNFATMMNFVRAVISQ 33
Score = 25.0 bits (53), Expect = 7.3
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 147 IVFLVDTSD---RERFEESKSELQCLLTD 172
IVFL+D S F + ++ +++
Sbjct: 5 IVFLIDGSGSISSRNFATMMNFVRAVISQ 33
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 25.3 bits (54), Expect = 7.5
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFP 110
L+ +GL AGK T + + T R K+ P
Sbjct: 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTP 44
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 25.2 bits (54), Expect = 7.8
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 115 IVFLVDTSD---RERFEESKS 132
++ L+D S F+E KS
Sbjct: 5 VILLLDGSSSFPASYFDEMKS 25
Score = 25.2 bits (54), Expect = 7.8
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 147 IVFLVDTSD---RERFEESKS 164
++ L+D S F+E KS
Sbjct: 5 VILLLDGSSSFPASYFDEMKS 25
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.0 bits (53), Expect = 7.8
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 67 GKLLFL-GLDNAGKTTLLHML----KDDRLAQPVPTLHPTRRVWKDY 108
G+++ L G GK+T++ L + + T P
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGV 48
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 25.3 bits (55), Expect = 7.9
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLAS 145
+ W + + ++ L D F + E T S
Sbjct: 107 KDWNRLYGG-NLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDS 148
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 24.8 bits (53), Expect = 8.0
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
K++ G +GK T ++K + R
Sbjct: 5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRA 52
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 25.0 bits (53), Expect = 9.2
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 115 IVFLVDTSD---RERFEESKSELQCLLTD 140
I FL+D S F K + ++
Sbjct: 8 IAFLIDGSGSIIPHDFRRMKEFVSTVMEQ 36
Score = 25.0 bits (53), Expect = 9.2
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 147 IVFLVDTSD---RERFEESKSELQCLLTD 172
I FL+D S F K + ++
Sbjct: 8 IAFLIDGSGSIIPHDFRRMKEFVSTVMEQ 36
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.8 bits (54), Expect = 9.5
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 51 PTLHPILGYLGLWTKSGKLL-FLGLDNAGKTTLLHML 86
IL + + ++ F G GK+T+ +L
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 935,782
Number of extensions: 41213
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 224
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)