Query psy8712
Match_columns 651
No_of_seqs 371 out of 3136
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:21:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0349|consensus 100.0 1E-150 3E-155 1149.8 35.9 628 1-646 1-724 (725)
2 KOG0330|consensus 100.0 5.5E-66 1.2E-70 524.5 25.4 293 2-518 61-406 (476)
3 KOG0331|consensus 100.0 1.4E-61 3E-66 522.6 26.9 299 3-518 92-447 (519)
4 KOG0338|consensus 100.0 1.4E-60 3E-65 497.7 22.9 296 2-518 181-532 (691)
5 COG0513 SrmB Superfamily II DN 100.0 1.4E-59 3.1E-64 525.1 31.5 295 3-518 30-379 (513)
6 KOG0328|consensus 100.0 1.7E-59 3.7E-64 458.9 24.6 316 2-591 27-395 (400)
7 KOG0333|consensus 100.0 7.6E-58 1.6E-62 479.0 24.9 317 1-526 244-631 (673)
8 KOG0326|consensus 100.0 4.2E-58 9.1E-63 455.6 20.3 316 3-593 86-453 (459)
9 KOG0340|consensus 100.0 2.1E-57 4.5E-62 457.0 23.1 317 1-591 6-383 (442)
10 KOG0345|consensus 100.0 3.1E-56 6.8E-61 462.4 30.1 225 286-519 81-364 (567)
11 KOG0342|consensus 100.0 5E-55 1.1E-59 456.6 31.3 298 2-518 82-436 (543)
12 PRK04837 ATP-dependent RNA hel 100.0 1.4E-54 3E-59 477.4 33.1 323 2-589 8-382 (423)
13 KOG0348|consensus 100.0 2.9E-55 6.3E-60 460.2 24.5 306 2-518 136-553 (708)
14 KOG0343|consensus 100.0 1.4E-54 3.1E-59 456.2 28.0 296 3-519 70-422 (758)
15 PRK10590 ATP-dependent RNA hel 100.0 2.5E-53 5.4E-58 471.1 33.5 318 3-588 2-371 (456)
16 PTZ00110 helicase; Provisional 100.0 1.5E-53 3.3E-58 480.6 32.2 298 2-518 130-483 (545)
17 PRK11634 ATP-dependent RNA hel 100.0 2.6E-53 5.7E-58 483.3 33.8 315 2-589 6-372 (629)
18 PRK11776 ATP-dependent RNA hel 100.0 4.1E-53 8.9E-58 470.6 33.6 294 1-518 3-348 (460)
19 KOG0346|consensus 100.0 1.7E-53 3.6E-58 438.4 26.9 300 3-518 20-409 (569)
20 PLN00206 DEAD-box ATP-dependen 100.0 5.5E-53 1.2E-57 474.4 33.6 299 2-518 121-474 (518)
21 PRK04537 ATP-dependent RNA hel 100.0 2.5E-52 5.3E-57 472.5 33.5 302 2-518 9-363 (572)
22 KOG0347|consensus 100.0 2E-53 4.4E-58 447.5 21.4 317 1-522 180-573 (731)
23 KOG0335|consensus 100.0 2.9E-53 6.2E-58 450.8 22.4 229 284-518 152-443 (482)
24 KOG0336|consensus 100.0 3.6E-53 7.8E-58 431.7 21.1 227 282-520 292-573 (629)
25 KOG0341|consensus 100.0 1.8E-54 3.8E-59 438.6 11.3 305 2-519 170-528 (610)
26 PRK11192 ATP-dependent RNA hel 100.0 2.1E-51 4.6E-56 453.8 35.3 297 3-518 2-351 (434)
27 KOG0337|consensus 100.0 3E-51 6.4E-56 420.2 20.6 371 2-648 21-444 (529)
28 KOG0327|consensus 100.0 9.5E-51 2.1E-55 414.9 20.0 316 3-592 27-393 (397)
29 PRK01297 ATP-dependent RNA hel 100.0 2.8E-49 6.2E-54 441.2 33.3 302 2-518 87-441 (475)
30 KOG0339|consensus 100.0 2.6E-50 5.7E-55 420.1 23.0 303 1-522 222-578 (731)
31 KOG0332|consensus 100.0 1.3E-50 2.9E-55 410.0 17.4 313 2-590 90-465 (477)
32 KOG0334|consensus 100.0 5E-50 1.1E-54 452.0 22.2 298 2-518 365-719 (997)
33 PTZ00424 helicase 45; Provisio 100.0 5.5E-48 1.2E-52 422.3 32.4 316 2-591 28-396 (401)
34 KOG0329|consensus 100.0 2.2E-49 4.7E-54 382.9 15.5 318 2-592 42-379 (387)
35 KOG4284|consensus 100.0 8.6E-48 1.9E-52 410.2 24.1 230 282-521 91-381 (980)
36 KOG0350|consensus 100.0 3E-45 6.6E-50 382.7 24.2 231 285-519 216-540 (620)
37 TIGR03817 DECH_helic helicase/ 100.0 8.9E-43 1.9E-47 404.3 28.5 226 285-519 82-386 (742)
38 KOG0344|consensus 100.0 3.2E-42 6.9E-47 368.4 15.4 229 284-519 209-495 (593)
39 PLN03137 ATP-dependent DNA hel 100.0 8.8E-38 1.9E-42 361.3 27.5 221 286-521 502-789 (1195)
40 TIGR00614 recQ_fam ATP-depende 100.0 4.6E-37 1E-41 342.1 25.5 224 286-523 53-337 (470)
41 TIGR00580 mfd transcription-re 100.0 7.3E-36 1.6E-40 350.0 30.7 277 285-631 501-838 (926)
42 PRK13767 ATP-dependent helicas 100.0 6.4E-36 1.4E-40 353.4 26.4 232 284-519 84-398 (876)
43 PRK10689 transcription-repair 100.0 3.5E-35 7.5E-40 351.1 28.7 274 285-632 650-988 (1147)
44 PRK11057 ATP-dependent DNA hel 100.0 4.2E-35 9.1E-40 335.1 27.4 221 286-521 67-345 (607)
45 PRK02362 ski2-like helicase; P 100.0 2.7E-35 5.9E-40 344.4 24.1 223 286-520 69-398 (737)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.9E-35 8.4E-40 335.3 24.4 224 284-518 61-390 (844)
47 TIGR01389 recQ ATP-dependent D 100.0 1.3E-34 2.9E-39 331.3 24.7 222 286-522 55-334 (591)
48 PRK00254 ski2-like helicase; P 100.0 9.2E-35 2E-39 339.2 23.0 220 286-520 70-389 (720)
49 PRK10917 ATP-dependent DNA hel 100.0 2.2E-32 4.7E-37 316.2 30.3 249 285-599 311-624 (681)
50 TIGR00643 recG ATP-dependent D 100.0 1.1E-31 2.4E-36 308.3 27.4 216 285-517 285-564 (630)
51 PRK09401 reverse gyrase; Revie 100.0 6.4E-32 1.4E-36 323.8 24.7 213 285-505 124-430 (1176)
52 PRK01172 ski2-like helicase; P 100.0 3.4E-32 7.5E-37 315.9 21.6 222 286-520 67-379 (674)
53 COG1201 Lhr Lhr-like helicases 100.0 1.2E-31 2.6E-36 305.1 23.6 228 283-518 72-361 (814)
54 PRK14701 reverse gyrase; Provi 100.0 4.1E-31 8.8E-36 323.0 24.7 227 285-517 123-454 (1638)
55 PHA02653 RNA helicase NPH-II; 100.0 7.7E-31 1.7E-35 298.4 24.6 216 284-519 222-514 (675)
56 COG0514 RecQ Superfamily II DN 100.0 1.8E-30 3.9E-35 286.1 21.3 227 286-523 59-341 (590)
57 cd00268 DEADc DEAD-box helicas 100.0 6.7E-30 1.5E-34 253.1 22.2 202 4-427 1-202 (203)
58 PRK09751 putative ATP-dependen 100.0 4.3E-30 9.3E-35 309.0 22.8 226 284-513 37-379 (1490)
59 PRK12898 secA preprotein trans 100.0 1.9E-28 4.1E-33 275.1 20.3 231 285-523 145-590 (656)
60 TIGR01054 rgy reverse gyrase. 100.0 4.6E-28 9.9E-33 291.1 24.7 197 285-491 122-409 (1171)
61 COG1205 Distinct helicase fami 100.0 3.6E-27 7.7E-32 275.3 22.8 236 286-526 117-429 (851)
62 COG1197 Mfd Transcription-repa 99.9 8.8E-27 1.9E-31 268.8 22.6 337 211-632 573-982 (1139)
63 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.2E-26 2.6E-31 270.0 23.5 214 286-520 47-337 (819)
64 PRK09200 preprotein translocas 99.9 1.4E-26 3.1E-31 265.1 21.0 86 285-374 120-212 (790)
65 PRK11664 ATP-dependent RNA hel 99.9 1.8E-26 3.8E-31 269.1 20.0 214 286-520 50-340 (812)
66 KOG0351|consensus 99.9 2.4E-25 5.2E-30 258.5 21.9 222 286-521 306-594 (941)
67 PHA02558 uvsW UvsW helicase; P 99.9 2.8E-25 6E-30 249.2 20.7 209 286-517 160-450 (501)
68 TIGR00963 secA preprotein tran 99.9 3.8E-25 8.3E-30 249.7 21.2 84 286-374 99-189 (745)
69 TIGR01587 cas3_core CRISPR-ass 99.9 1.4E-25 3E-30 241.9 17.0 218 285-518 30-335 (358)
70 PF00270 DEAD: DEAD/DEAH box h 99.9 2E-25 4.4E-30 213.8 16.2 123 286-416 46-169 (169)
71 TIGR03714 secA2 accessory Sec 99.9 1.3E-24 2.7E-29 247.0 21.8 86 286-374 113-208 (762)
72 KOG0352|consensus 99.9 1.3E-24 2.8E-29 224.1 17.4 224 286-523 63-366 (641)
73 COG1204 Superfamily II helicas 99.9 1.7E-24 3.6E-29 249.8 19.4 225 286-522 78-411 (766)
74 TIGR03158 cas3_cyano CRISPR-as 99.9 6E-24 1.3E-28 228.5 22.3 208 286-504 41-357 (357)
75 PRK05580 primosome assembly pr 99.9 1.8E-23 3.9E-28 241.4 21.8 106 286-410 192-306 (679)
76 COG1202 Superfamily II helicas 99.9 8.1E-24 1.8E-28 225.3 15.9 224 286-519 263-553 (830)
77 PRK13766 Hef nuclease; Provisi 99.9 1.4E-22 3E-27 239.6 27.7 113 286-408 60-172 (773)
78 PRK11131 ATP-dependent RNA hel 99.9 2.7E-23 5.9E-28 246.7 17.8 203 292-520 130-412 (1294)
79 COG1111 MPH1 ERCC4-like helica 99.9 4E-22 8.7E-27 211.5 24.1 115 286-410 60-174 (542)
80 KOG0952|consensus 99.9 6.8E-22 1.5E-26 222.9 19.9 260 283-587 163-524 (1230)
81 KOG0353|consensus 99.9 5.2E-21 1.1E-25 194.8 18.1 219 286-518 136-466 (695)
82 PRK12899 secA preprotein trans 99.9 1.1E-21 2.4E-26 224.1 14.3 83 287-374 138-228 (970)
83 COG1200 RecG RecG-like helicas 99.9 6.6E-21 1.4E-25 210.2 19.4 304 233-612 253-633 (677)
84 KOG0354|consensus 99.8 1.6E-20 3.4E-25 210.0 17.9 115 286-410 108-223 (746)
85 TIGR01967 DEAH_box_HrpA ATP-de 99.8 2.1E-20 4.5E-25 223.1 19.7 173 335-520 154-405 (1283)
86 TIGR00595 priA primosomal prot 99.8 1.4E-18 3.1E-23 194.2 20.9 106 285-410 26-141 (505)
87 TIGR00603 rad25 DNA repair hel 99.8 1.1E-18 2.5E-23 198.6 19.9 221 286-525 300-613 (732)
88 KOG0947|consensus 99.8 8.8E-19 1.9E-23 195.8 17.6 115 285-421 341-455 (1248)
89 PRK09694 helicase Cas3; Provis 99.8 9.2E-18 2E-22 196.1 20.0 213 286-508 333-664 (878)
90 smart00487 DEXDc DEAD-like hel 99.8 2.6E-17 5.6E-22 159.9 18.8 136 286-431 56-192 (201)
91 KOG0951|consensus 99.8 7.8E-18 1.7E-22 192.4 16.3 231 286-526 366-708 (1674)
92 COG4581 Superfamily II RNA hel 99.7 6.7E-17 1.5E-21 187.5 18.9 118 286-421 164-281 (1041)
93 PRK13104 secA preprotein trans 99.7 1.5E-16 3.2E-21 182.8 21.0 84 286-374 125-215 (896)
94 KOG0948|consensus 99.7 1.9E-17 4.2E-22 181.3 12.3 114 286-421 174-287 (1041)
95 PRK12904 preprotein translocas 99.7 2.3E-16 4.9E-21 181.1 20.3 83 287-374 125-214 (830)
96 PRK12906 secA preprotein trans 99.7 2.3E-16 5E-21 180.4 17.3 84 286-374 123-213 (796)
97 PF00622 SPRY: SPRY domain; I 99.7 5E-17 1.1E-21 147.7 4.1 114 129-245 1-124 (124)
98 smart00449 SPRY Domain in SPla 99.6 2.2E-16 4.8E-21 143.4 4.9 113 129-243 1-121 (122)
99 PRK11448 hsdR type I restricti 99.6 1.5E-14 3.2E-19 173.9 21.6 113 285-410 464-596 (1123)
100 COG1061 SSL2 DNA or RNA helica 99.6 1.2E-14 2.7E-19 160.5 18.1 44 462-505 332-375 (442)
101 PRK04914 ATP-dependent helicas 99.6 2.1E-13 4.5E-18 160.9 21.6 56 463-518 547-602 (956)
102 PRK13107 preprotein translocas 99.5 4.8E-13 1E-17 153.8 19.1 84 286-374 125-215 (908)
103 COG1198 PriA Primosomal protei 99.5 2.7E-12 5.9E-17 146.6 19.7 105 285-409 246-360 (730)
104 KOG0950|consensus 99.4 5.8E-13 1.3E-17 150.9 13.9 204 315-525 297-617 (1008)
105 COG1110 Reverse gyrase [DNA re 99.4 6.6E-12 1.4E-16 143.1 19.0 88 285-375 126-217 (1187)
106 cd00046 DEXDc DEAD-like helica 99.4 2.3E-12 4.9E-17 117.7 12.7 144 252-408 1-144 (144)
107 COG4098 comFA Superfamily II D 99.4 6.2E-11 1.3E-15 121.0 21.6 202 286-513 146-410 (441)
108 COG1643 HrpA HrpA-like helicas 99.4 4.4E-11 9.5E-16 138.7 21.3 173 337-521 139-389 (845)
109 KOG4150|consensus 99.3 7.3E-12 1.6E-16 134.1 12.4 200 322-526 369-647 (1034)
110 PF04851 ResIII: Type III rest 99.3 1.4E-11 3.1E-16 118.9 9.1 109 286-409 52-183 (184)
111 COG1203 CRISPR-associated heli 99.3 3.3E-11 7.2E-16 141.1 13.5 223 285-519 247-550 (733)
112 KOG0922|consensus 99.2 1.2E-09 2.7E-14 120.6 21.6 172 337-521 140-392 (674)
113 PRK12326 preprotein translocas 99.2 9E-10 2E-14 124.4 19.7 84 286-374 121-211 (764)
114 TIGR01407 dinG_rel DnaQ family 99.1 3E-10 6.5E-15 135.6 14.7 52 10-62 232-287 (850)
115 KOG2626|consensus 99.1 4.6E-11 1E-15 128.0 5.9 157 88-250 292-499 (544)
116 TIGR03117 cas_csf4 CRISPR-asso 99.1 3E-10 6.4E-15 129.0 12.7 40 336-375 181-220 (636)
117 PRK13103 secA preprotein trans 99.1 2.6E-09 5.7E-14 123.4 19.4 84 286-374 125-215 (913)
118 PRK12900 secA preprotein trans 99.1 1.9E-10 4.2E-15 133.1 9.5 114 251-374 151-271 (1025)
119 KOG0924|consensus 99.1 2.9E-09 6.4E-14 116.8 17.6 58 463-521 624-699 (1042)
120 KOG0949|consensus 99.0 4.9E-09 1.1E-13 119.0 17.3 113 286-410 558-673 (1330)
121 PRK07246 bifunctional ATP-depe 99.0 1.9E-09 4E-14 127.5 13.1 41 21-62 243-287 (820)
122 KOG0923|consensus 99.0 3.7E-08 8.1E-13 108.2 20.1 168 338-518 356-605 (902)
123 KOG0920|consensus 98.9 3.1E-08 6.7E-13 115.1 19.4 66 337-410 264-331 (924)
124 COG4096 HsdR Type I site-speci 98.9 1.5E-08 3.2E-13 114.6 13.9 78 285-374 216-298 (875)
125 PLN03142 Probable chromatin-re 98.9 5.5E-08 1.2E-12 115.9 18.2 58 466-523 544-605 (1033)
126 PRK05298 excinuclease ABC subu 98.8 1.8E-08 3.8E-13 116.8 12.2 138 398-593 446-590 (652)
127 TIGR00348 hsdR type I site-spe 98.8 3.6E-08 7.9E-13 114.6 13.9 107 284-409 293-403 (667)
128 PRK12903 secA preprotein trans 98.7 2.9E-07 6.4E-12 105.8 18.3 83 287-374 122-211 (925)
129 PF00271 Helicase_C: Helicase 98.7 8.9E-09 1.9E-13 85.6 4.0 50 458-507 29-78 (78)
130 TIGR00631 uvrb excinuclease AB 98.7 7.6E-08 1.6E-12 111.0 11.8 105 398-519 442-553 (655)
131 KOG0926|consensus 98.7 3.2E-07 6.9E-12 102.7 15.3 153 251-417 271-430 (1172)
132 smart00488 DEXDc2 DEAD-like he 98.7 1.5E-07 3.2E-12 98.6 11.4 43 24-66 8-54 (289)
133 smart00489 DEXDc3 DEAD-like he 98.7 1.5E-07 3.2E-12 98.6 11.4 43 24-66 8-54 (289)
134 KOG0925|consensus 98.6 2E-06 4.3E-11 92.0 18.8 54 465-519 316-387 (699)
135 PF06862 DUF1253: Protein of u 98.6 3.3E-06 7.1E-11 92.0 20.8 180 337-518 131-414 (442)
136 KOG2340|consensus 98.6 1.2E-06 2.6E-11 94.5 14.7 139 283-423 292-493 (698)
137 PRK08074 bifunctional ATP-depe 98.5 5.2E-07 1.1E-11 108.7 13.2 43 23-65 256-302 (928)
138 KOG2243|consensus 98.5 7.3E-08 1.6E-12 109.9 5.0 119 123-244 1100-1227(5019)
139 PF00176 SNF2_N: SNF2 family N 98.5 2.1E-07 4.6E-12 97.2 7.9 162 242-416 16-180 (299)
140 cd00079 HELICc Helicase superf 98.4 1.4E-06 3E-11 79.1 10.0 58 458-515 74-131 (131)
141 CHL00122 secA preprotein trans 98.4 1.4E-06 3.1E-11 100.8 10.1 84 286-374 119-209 (870)
142 PF07517 SecA_DEAD: SecA DEAD- 98.3 4.1E-06 8.9E-11 86.0 11.8 84 286-374 120-210 (266)
143 KOG1123|consensus 98.3 4.4E-06 9.4E-11 89.6 11.3 136 248-410 317-460 (776)
144 PF07652 Flavi_DEAD: Flaviviru 98.3 4.5E-06 9.7E-11 77.0 9.4 105 283-410 32-138 (148)
145 PRK12902 secA preprotein trans 98.2 6E-06 1.3E-10 95.7 11.7 84 286-374 128-218 (939)
146 smart00490 HELICc helicase sup 98.2 1.4E-06 3.1E-11 72.0 4.9 50 458-507 33-82 (82)
147 COG0556 UvrB Helicase subunit 98.2 1.5E-05 3.2E-10 86.6 12.6 60 458-518 492-556 (663)
148 COG4889 Predicted helicase [Ge 98.1 5.2E-06 1.1E-10 94.0 8.3 109 256-375 185-318 (1518)
149 PRK11747 dinG ATP-dependent DN 98.1 2E-05 4.2E-10 92.3 12.1 45 21-66 23-76 (697)
150 KOG0951|consensus 98.1 9.2E-05 2E-09 87.2 17.0 189 202-416 1102-1305(1674)
151 KOG0953|consensus 98.0 4.2E-05 9.1E-10 83.4 10.7 226 254-518 194-476 (700)
152 COG1199 DinG Rad3-related DNA 97.9 3.4E-05 7.3E-10 90.2 9.9 50 17-66 8-61 (654)
153 PRK15483 type III restriction- 97.8 0.00017 3.8E-09 85.2 12.5 146 252-410 60-240 (986)
154 KOG3953|consensus 97.7 4.8E-05 1E-09 74.5 5.6 154 89-246 27-201 (242)
155 KOG0385|consensus 97.6 0.00029 6.2E-09 79.6 11.0 140 250-408 185-327 (971)
156 PRK14873 primosome assembly pr 97.6 7.5E-05 1.6E-09 86.4 6.7 126 261-410 170-305 (665)
157 KOG2242|consensus 97.6 2E-05 4.4E-10 88.7 1.8 115 135-249 99-217 (558)
158 TIGR02562 cas3_yersinia CRISPR 97.6 0.00016 3.4E-09 85.4 7.8 175 234-420 405-646 (1110)
159 PF02399 Herpes_ori_bp: Origin 97.4 0.0012 2.5E-08 76.4 12.8 147 253-422 51-203 (824)
160 PF14617 CMS1: U3-containing 9 97.4 0.0002 4.3E-09 72.9 5.9 87 281-371 123-211 (252)
161 PF13086 AAA_11: AAA domain; P 97.4 0.00084 1.8E-08 67.0 9.3 29 25-53 2-31 (236)
162 PF13604 AAA_30: AAA domain; P 97.3 0.00083 1.8E-08 66.3 8.4 30 25-54 2-33 (196)
163 KOG0952|consensus 97.3 6.2E-05 1.3E-09 87.4 0.3 128 285-421 974-1104(1230)
164 PF09848 DUF2075: Uncharacteri 97.2 0.00068 1.5E-08 73.2 6.6 108 253-388 3-117 (352)
165 COG0610 Type I site-specific r 97.1 0.0012 2.6E-08 79.8 9.1 141 249-409 271-414 (962)
166 KOG1000|consensus 97.0 0.025 5.4E-07 61.6 16.2 50 475-524 557-610 (689)
167 KOG0390|consensus 96.9 0.018 3.9E-07 66.9 15.0 151 251-416 263-422 (776)
168 KOG0387|consensus 96.8 0.023 5E-07 65.0 14.2 147 252-417 225-384 (923)
169 COG3587 Restriction endonuclea 96.6 0.036 7.9E-07 64.1 14.4 153 243-410 66-244 (985)
170 KOG0331|consensus 96.6 0.00056 1.2E-08 75.8 0.1 227 79-391 165-431 (519)
171 COG1200 RecG RecG-like helicas 96.4 0.0044 9.6E-08 70.2 5.8 80 7-99 245-331 (677)
172 KOG0332|consensus 96.4 0.00052 1.1E-08 71.8 -1.5 45 211-272 106-150 (477)
173 COG0513 SrmB Superfamily II DN 96.3 0.0014 2.9E-08 74.4 1.3 70 284-366 273-346 (513)
174 PRK12901 secA preprotein trans 96.2 0.0036 7.8E-08 74.1 4.1 114 251-374 182-303 (1112)
175 KOG0389|consensus 96.2 0.01 2.2E-07 67.8 7.1 152 249-418 416-572 (941)
176 KOG1803|consensus 96.1 0.016 3.4E-07 64.7 7.7 43 24-66 185-228 (649)
177 TIGR00604 rad3 DNA repair heli 96.0 0.019 4.2E-07 67.7 9.0 45 21-65 7-55 (705)
178 KOG1477|consensus 95.9 0.0052 1.1E-07 68.2 2.9 113 130-242 79-201 (469)
179 PRK10875 recD exonuclease V su 95.8 0.1 2.2E-06 60.3 13.0 29 26-54 154-182 (615)
180 TIGR01447 recD exodeoxyribonuc 95.7 0.059 1.3E-06 62.0 10.9 29 26-54 147-175 (586)
181 TIGR00376 DNA helicase, putati 95.7 0.045 9.6E-07 63.7 10.0 33 23-55 156-189 (637)
182 TIGR01448 recD_rel helicase, p 95.7 0.058 1.3E-06 63.7 11.1 34 19-53 319-352 (720)
183 KOG4030|consensus 95.7 0.019 4.1E-07 52.9 5.2 154 85-253 25-186 (197)
184 PF12340 DUF3638: Protein of u 95.6 0.091 2E-06 52.8 10.4 61 3-66 4-67 (229)
185 KOG1132|consensus 95.6 0.034 7.4E-07 64.5 8.1 42 24-65 21-66 (945)
186 PRK13889 conjugal transfer rel 95.4 0.096 2.1E-06 63.4 11.5 36 19-55 342-378 (988)
187 TIGR02768 TraA_Ti Ti-type conj 95.3 0.15 3.2E-06 60.6 12.5 45 8-53 337-382 (744)
188 KOG1002|consensus 94.4 0.071 1.5E-06 58.1 6.0 141 254-417 207-363 (791)
189 KOG0384|consensus 94.3 0.51 1.1E-05 56.9 13.1 148 250-417 388-544 (1373)
190 PRK13826 Dtr system oriT relax 94.2 0.37 8E-06 58.9 12.1 46 7-53 365-411 (1102)
191 KOG1802|consensus 93.9 0.35 7.6E-06 54.8 10.2 48 16-63 402-449 (935)
192 KOG4439|consensus 93.9 0.049 1.1E-06 61.7 3.6 123 248-375 342-477 (901)
193 PF00580 UvrD-helicase: UvrD/R 93.8 0.1 2.2E-06 54.5 5.9 35 25-61 1-35 (315)
194 PRK14722 flhF flagellar biosyn 93.8 0.85 1.8E-05 49.5 12.8 59 359-422 213-271 (374)
195 PF13872 AAA_34: P-loop contai 93.7 0.092 2E-06 54.7 5.2 145 250-416 61-227 (303)
196 KOG0328|consensus 93.7 0.045 9.8E-07 55.7 2.7 42 211-271 43-84 (400)
197 COG0653 SecA Preprotein transl 93.6 0.066 1.4E-06 62.6 4.4 114 251-374 93-213 (822)
198 KOG0327|consensus 93.6 0.029 6.2E-07 59.4 1.2 44 210-272 41-84 (397)
199 cd00046 DEXDc DEAD-like helica 93.4 0.021 4.5E-07 51.3 -0.3 50 40-99 1-50 (144)
200 PF05970 PIF1: PIF1-like helic 93.1 0.22 4.7E-06 54.1 7.2 30 25-54 2-37 (364)
201 KOG0392|consensus 92.9 0.23 4.9E-06 59.7 7.2 150 252-418 995-1148(1549)
202 KOG0921|consensus 92.8 0.24 5.2E-06 57.7 7.0 32 339-373 474-505 (1282)
203 PF13245 AAA_19: Part of AAA d 92.6 0.067 1.5E-06 44.3 1.8 50 254-304 13-62 (76)
204 PF13401 AAA_22: AAA domain; P 92.5 0.093 2E-06 47.4 2.7 20 253-272 6-25 (131)
205 KOG1805|consensus 92.4 0.45 9.7E-06 56.2 8.6 54 8-66 657-711 (1100)
206 TIGR00596 rad1 DNA repair prot 92.4 0.29 6.2E-06 58.3 7.3 82 336-423 6-92 (814)
207 KOG1477|consensus 92.4 0.08 1.7E-06 59.0 2.5 63 181-247 20-84 (469)
208 PRK12899 secA preprotein trans 92.3 0.46 1E-05 56.6 8.6 87 5-103 65-159 (970)
209 COG1197 Mfd Transcription-repa 92.1 0.42 9.1E-06 57.8 8.1 94 282-390 801-898 (1139)
210 PRK12723 flagellar biosynthesi 91.8 0.98 2.1E-05 49.3 10.1 136 249-421 172-310 (388)
211 KOG0335|consensus 91.4 0.22 4.8E-06 54.9 4.6 289 3-369 75-413 (482)
212 KOG1001|consensus 91.4 0.55 1.2E-05 54.7 8.0 152 245-417 146-301 (674)
213 PRK12901 secA preprotein trans 91.0 0.47 1E-05 56.9 6.9 138 364-523 597-745 (1112)
214 PRK10919 ATP-dependent DNA hel 90.5 0.65 1.4E-05 54.7 7.6 31 24-56 2-32 (672)
215 PRK06526 transposase; Provisio 90.4 0.62 1.3E-05 47.9 6.5 22 250-271 97-118 (254)
216 PRK06893 DNA replication initi 90.3 0.48 1E-05 47.9 5.6 47 359-410 89-136 (229)
217 PRK08084 DNA replication initi 90.1 0.3 6.5E-06 49.6 3.9 56 210-269 8-63 (235)
218 PRK11331 5-methylcytosine-spec 90.1 1.8 3.9E-05 48.0 10.1 32 23-54 178-209 (459)
219 KOG0342|consensus 90.0 0.036 7.8E-07 60.4 -3.1 209 81-366 156-403 (543)
220 KOG0338|consensus 89.9 0.058 1.3E-06 59.1 -1.5 212 80-368 253-501 (691)
221 PRK05642 DNA replication initi 89.1 0.55 1.2E-05 47.7 4.9 45 360-410 96-141 (234)
222 KOG0391|consensus 88.9 0.84 1.8E-05 54.8 6.7 141 249-408 632-775 (1958)
223 COG2805 PilT Tfp pilus assembl 88.7 0.27 5.8E-06 51.1 2.3 45 3-66 107-151 (353)
224 TIGR02525 plasmid_TraJ plasmid 88.4 0.33 7.1E-06 52.7 2.9 27 38-65 148-174 (372)
225 PF05127 Helicase_RecD: Helica 88.4 0.31 6.7E-06 47.2 2.4 123 256-410 2-125 (177)
226 PF02562 PhoH: PhoH-like prote 87.9 0.37 8.1E-06 47.8 2.7 44 23-66 3-46 (205)
227 PRK11054 helD DNA helicase IV; 87.8 2.5 5.4E-05 49.7 9.8 39 16-56 188-226 (684)
228 TIGR01075 uvrD DNA helicase II 87.7 1 2.2E-05 53.5 6.6 32 23-56 3-34 (715)
229 PF02562 PhoH: PhoH-like prote 87.7 0.63 1.4E-05 46.2 4.1 40 253-295 21-60 (205)
230 PRK10436 hypothetical protein; 87.3 0.49 1.1E-05 52.9 3.4 29 27-55 204-234 (462)
231 PRK11773 uvrD DNA-dependent he 86.4 1.3 2.8E-05 52.6 6.6 31 24-56 9-39 (721)
232 PRK14712 conjugal transfer nic 86.2 2.9 6.4E-05 53.2 9.7 31 24-54 835-867 (1623)
233 PRK13894 conjugal transfer ATP 86.2 0.77 1.7E-05 48.8 4.1 44 16-62 126-170 (319)
234 PRK10689 transcription-repair 86.2 2.3 5E-05 52.9 8.7 78 11-101 588-671 (1147)
235 PRK08903 DnaA regulatory inact 86.0 1.5 3.3E-05 43.9 5.9 20 250-269 41-60 (227)
236 PF00308 Bac_DnaA: Bacterial d 85.8 1.2 2.7E-05 44.6 5.2 47 359-410 95-142 (219)
237 PRK00411 cdc6 cell division co 85.7 1.2 2.7E-05 48.5 5.6 25 248-272 52-76 (394)
238 PRK04296 thymidine kinase; Pro 85.6 0.27 5.9E-06 48.2 0.3 34 254-292 5-38 (190)
239 PTZ00112 origin recognition co 85.6 4.3 9.3E-05 48.5 9.8 23 249-271 778-801 (1164)
240 cd00009 AAA The AAA+ (ATPases 85.5 2.3 4.9E-05 38.1 6.4 22 250-271 18-39 (151)
241 PRK08181 transposase; Validate 85.4 2.8 6.1E-05 43.5 7.7 22 250-271 105-126 (269)
242 PF05621 TniB: Bacterial TniB 85.4 1.6 3.4E-05 45.7 5.8 57 248-304 58-116 (302)
243 COG1875 NYN ribonuclease and A 85.4 4.8 0.0001 43.1 9.3 48 19-66 223-272 (436)
244 TIGR02524 dot_icm_DotB Dot/Icm 85.3 0.56 1.2E-05 50.7 2.5 17 38-54 133-149 (358)
245 PF13245 AAA_19: Part of AAA d 85.3 0.5 1.1E-05 39.0 1.7 25 31-55 1-26 (76)
246 TIGR00580 mfd transcription-re 85.2 2.6 5.6E-05 51.3 8.3 82 8-102 435-523 (926)
247 PRK08727 hypothetical protein; 84.8 1.6 3.6E-05 44.1 5.6 18 253-270 43-60 (233)
248 COG0553 HepA Superfamily II DN 84.7 1.7 3.7E-05 52.4 6.7 119 250-375 357-486 (866)
249 PF13177 DNA_pol3_delta2: DNA 84.7 1.9 4.2E-05 41.0 5.7 43 360-409 101-143 (162)
250 PF03354 Terminase_1: Phage Te 84.6 1.4 3E-05 49.7 5.4 57 253-311 24-81 (477)
251 PRK14088 dnaA chromosomal repl 84.5 2.9 6.2E-05 46.7 7.8 54 361-420 194-248 (440)
252 KOG0989|consensus 84.5 0.75 1.6E-05 47.9 2.9 53 359-419 127-179 (346)
253 KOG0388|consensus 84.4 2.3 5E-05 48.7 6.8 138 251-410 586-735 (1185)
254 TIGR02782 TrbB_P P-type conjug 84.2 1 2.2E-05 47.5 3.9 35 17-53 111-146 (299)
255 TIGR03420 DnaA_homol_Hda DnaA 83.9 1.9 4.1E-05 43.0 5.5 21 249-269 36-56 (226)
256 PRK13709 conjugal transfer nic 83.8 5.2 0.00011 51.6 10.4 31 24-54 967-999 (1747)
257 PHA02533 17 large terminase pr 83.5 4.9 0.00011 45.9 9.2 78 285-374 105-182 (534)
258 TIGR02760 TraI_TIGR conjugativ 83.5 5.3 0.00011 52.6 10.5 30 24-53 429-460 (1960)
259 cd01126 TraG_VirD4 The TraG/Tr 83.4 0.59 1.3E-05 51.0 1.8 22 41-62 1-22 (384)
260 PRK13833 conjugal transfer pro 83.4 1.3 2.8E-05 47.2 4.2 35 17-53 123-158 (323)
261 COG1219 ClpX ATP-dependent pro 83.2 0.5 1.1E-05 49.4 1.0 15 40-54 98-112 (408)
262 PRK13900 type IV secretion sys 83.1 1.4 3.1E-05 47.1 4.5 18 36-53 157-174 (332)
263 PRK04537 ATP-dependent RNA hel 83.1 4.1 8.9E-05 47.1 8.5 74 283-369 256-333 (572)
264 smart00382 AAA ATPases associa 83.0 1 2.2E-05 40.0 2.8 22 251-272 2-23 (148)
265 TIGR02538 type_IV_pilB type IV 82.9 0.91 2E-05 52.2 3.1 36 17-55 295-332 (564)
266 TIGR00362 DnaA chromosomal rep 82.9 3.2 7E-05 45.6 7.3 18 253-270 138-155 (405)
267 TIGR00631 uvrb excinuclease AB 82.8 12 0.00026 44.0 12.1 79 282-373 440-522 (655)
268 TIGR02881 spore_V_K stage V sp 82.8 3.7 8.1E-05 42.2 7.3 22 249-270 40-61 (261)
269 cd01129 PulE-GspE PulE/GspE Th 82.6 1.2 2.5E-05 46.2 3.5 35 16-53 58-94 (264)
270 PF02534 T4SS-DNA_transf: Type 82.5 0.74 1.6E-05 51.6 2.2 21 41-61 46-66 (469)
271 PRK13764 ATPase; Provisional 82.3 0.86 1.9E-05 52.4 2.5 24 38-62 256-279 (602)
272 PRK09401 reverse gyrase; Revie 82.0 3.8 8.1E-05 51.2 8.1 71 20-103 77-147 (1176)
273 PRK14974 cell division protein 81.9 3.9 8.5E-05 43.8 7.2 55 360-421 221-276 (336)
274 TIGR02928 orc1/cdc6 family rep 81.8 2.4 5.2E-05 45.7 5.7 25 248-272 37-61 (365)
275 PRK10536 hypothetical protein; 81.5 1.3 2.8E-05 45.5 3.2 44 21-64 56-99 (262)
276 cd01120 RecA-like_NTPases RecA 81.4 3 6.5E-05 38.5 5.6 37 254-295 2-38 (165)
277 PRK00149 dnaA chromosomal repl 81.4 5.2 0.00011 44.7 8.3 53 360-418 210-263 (450)
278 TIGR02785 addA_Gpos recombinat 81.3 4.4 9.6E-05 51.1 8.5 36 25-62 2-37 (1232)
279 TIGR01073 pcrA ATP-dependent D 81.3 2.6 5.6E-05 50.2 6.2 33 23-57 3-35 (726)
280 COG4889 Predicted helicase [Ge 81.1 2.2 4.7E-05 50.2 5.1 57 461-517 527-586 (1518)
281 PRK11889 flhF flagellar biosyn 81.1 10 0.00022 41.6 9.9 132 250-422 240-376 (436)
282 PRK13850 type IV secretion sys 80.6 0.96 2.1E-05 52.9 2.2 23 40-62 140-162 (670)
283 TIGR01420 pilT_fam pilus retra 80.6 1.1 2.5E-05 48.1 2.6 17 38-54 121-137 (343)
284 TIGR01074 rep ATP-dependent DN 80.4 3.1 6.7E-05 49.0 6.4 32 25-58 2-33 (664)
285 PRK08116 hypothetical protein; 80.3 6.2 0.00013 40.9 7.9 21 252-272 115-135 (268)
286 PRK13897 type IV secretion sys 80.1 1.1 2.3E-05 51.9 2.3 24 40-63 159-182 (606)
287 PRK14087 dnaA chromosomal repl 80.0 2.7 5.8E-05 47.0 5.4 46 359-409 204-250 (450)
288 PHA02544 44 clamp loader, smal 79.9 3 6.4E-05 44.0 5.5 40 360-405 99-138 (316)
289 PRK10536 hypothetical protein; 79.8 3.7 8E-05 42.2 5.8 33 363-405 178-210 (262)
290 COG3973 Superfamily I DNA and 79.8 1.9 4.1E-05 48.8 4.0 64 246-309 221-285 (747)
291 TIGR02760 TraI_TIGR conjugativ 79.7 10 0.00022 50.1 11.0 31 24-54 1019-1051(1960)
292 PRK13880 conjugal transfer cou 79.4 1.1 2.4E-05 52.2 2.2 23 40-62 176-198 (636)
293 cd01130 VirB11-like_ATPase Typ 79.1 1.5 3.2E-05 42.7 2.7 30 25-54 10-40 (186)
294 COG1419 FlhF Flagellar GTP-bin 79.1 7.6 0.00016 42.4 8.2 135 250-422 202-337 (407)
295 PTZ00110 helicase; Provisional 78.8 6.6 0.00014 45.1 8.2 73 283-368 376-452 (545)
296 TIGR02533 type_II_gspE general 78.6 1.8 4E-05 48.8 3.6 36 16-54 220-257 (486)
297 PRK04837 ATP-dependent RNA hel 78.5 5.7 0.00012 43.9 7.4 72 284-368 255-330 (423)
298 PRK07003 DNA polymerase III su 78.4 5.6 0.00012 46.9 7.3 39 360-405 118-156 (830)
299 PRK07764 DNA polymerase III su 78.3 6 0.00013 47.5 7.9 39 360-405 119-157 (824)
300 COG2804 PulE Type II secretory 78.3 1.7 3.8E-05 48.3 3.2 30 26-55 243-274 (500)
301 COG1444 Predicted P-loop ATPas 78.2 11 0.00023 44.5 9.5 50 13-62 203-254 (758)
302 PRK06921 hypothetical protein; 78.2 2.2 4.7E-05 44.3 3.7 22 251-272 117-138 (266)
303 PRK14086 dnaA chromosomal repl 78.1 3.2 6.9E-05 47.8 5.3 50 359-414 375-425 (617)
304 PRK13851 type IV secretion sys 78.1 1.5 3.3E-05 47.1 2.6 19 35-53 158-176 (344)
305 COG1474 CDC6 Cdc6-related prot 77.9 9.1 0.0002 41.6 8.5 28 245-272 36-63 (366)
306 KOG4367|consensus 77.9 2.9 6.2E-05 45.0 4.4 111 117-232 562-682 (699)
307 PF00437 T2SE: Type II/IV secr 77.7 0.98 2.1E-05 46.6 1.0 18 36-53 124-141 (270)
308 PRK10590 ATP-dependent RNA hel 77.5 7.8 0.00017 43.4 8.2 72 283-367 244-319 (456)
309 CHL00122 secA preprotein trans 77.3 8.4 0.00018 46.0 8.5 68 20-102 73-140 (870)
310 PRK06526 transposase; Provisio 77.2 1.4 3.1E-05 45.2 2.0 39 15-53 68-112 (254)
311 KOG0344|consensus 77.2 3.7 8E-05 46.2 5.3 294 7-370 141-465 (593)
312 TIGR00614 recQ_fam ATP-depende 77.0 7.9 0.00017 43.5 8.1 69 18-101 5-73 (470)
313 PF05729 NACHT: NACHT domain 76.9 8.2 0.00018 35.8 7.1 19 254-272 3-21 (166)
314 PRK05986 cob(I)alamin adenolsy 76.7 16 0.00034 35.9 8.9 55 359-420 113-169 (191)
315 PRK13876 conjugal transfer cou 76.4 1.6 3.5E-05 50.9 2.4 23 40-62 145-167 (663)
316 COG4962 CpaF Flp pilus assembl 76.3 1.9 4E-05 45.9 2.6 36 18-53 151-187 (355)
317 PF01695 IstB_IS21: IstB-like 76.0 1.5 3.2E-05 42.6 1.6 23 250-272 46-68 (178)
318 KOG2243|consensus 75.9 2 4.4E-05 51.8 2.9 126 130-260 677-831 (5019)
319 PRK06731 flhF flagellar biosyn 75.9 11 0.00024 39.1 8.1 56 360-421 153-209 (270)
320 PF13173 AAA_14: AAA domain 75.9 14 0.0003 33.3 8.0 39 361-408 61-99 (128)
321 PRK11192 ATP-dependent RNA hel 75.9 9.2 0.0002 42.3 8.2 72 283-367 244-319 (434)
322 KOG0333|consensus 75.8 7.8 0.00017 43.3 7.1 72 282-366 515-590 (673)
323 PRK12422 chromosomal replicati 75.3 23 0.0005 39.6 11.0 127 288-420 113-256 (445)
324 TIGR00643 recG ATP-dependent D 75.2 17 0.00038 42.5 10.5 79 12-103 224-308 (630)
325 PF06733 DEAD_2: DEAD_2; Inte 74.9 1.4 3.1E-05 42.2 1.3 44 332-375 114-159 (174)
326 PRK07940 DNA polymerase III su 74.7 7.4 0.00016 42.7 6.8 23 250-272 35-57 (394)
327 cd00009 AAA The AAA+ (ATPases 74.4 2.5 5.4E-05 37.9 2.7 15 39-53 19-33 (151)
328 KOG4284|consensus 74.4 2.4 5.1E-05 48.3 2.9 41 213-272 43-83 (980)
329 TIGR02640 gas_vesic_GvpN gas v 74.3 2.5 5.5E-05 43.6 3.0 23 32-54 14-36 (262)
330 PRK14960 DNA polymerase III su 73.9 7.1 0.00015 45.4 6.6 22 251-272 37-58 (702)
331 KOG0330|consensus 73.8 1.7 3.8E-05 46.5 1.6 40 214-272 80-119 (476)
332 PRK14949 DNA polymerase III su 73.7 7.5 0.00016 46.7 6.9 20 253-272 40-59 (944)
333 PRK14958 DNA polymerase III su 73.6 5.8 0.00013 45.1 5.9 39 360-405 118-156 (509)
334 TIGR03499 FlhF flagellar biosy 73.6 3.6 7.9E-05 43.0 4.0 51 5-55 144-210 (282)
335 KOG0391|consensus 73.6 26 0.00057 43.0 11.0 114 381-519 1264-1387(1958)
336 PF01695 IstB_IS21: IstB-like 73.5 2 4.3E-05 41.7 1.8 40 15-54 17-62 (178)
337 PF00448 SRP54: SRP54-type pro 73.3 7 0.00015 38.5 5.7 53 360-418 82-135 (196)
338 PRK11776 ATP-dependent RNA hel 72.9 11 0.00024 42.1 7.9 73 284-369 242-318 (460)
339 COG1484 DnaC DNA replication p 72.9 1.5 3.2E-05 45.2 0.8 71 251-370 105-176 (254)
340 cd01124 KaiC KaiC is a circadi 72.8 3.3 7.2E-05 39.7 3.3 49 254-308 2-50 (187)
341 PRK13342 recombination factor 72.6 7.3 0.00016 43.0 6.2 19 251-269 36-54 (413)
342 COG0630 VirB11 Type IV secreto 72.4 2.1 4.6E-05 45.4 1.9 42 22-64 125-167 (312)
343 PRK11057 ATP-dependent DNA hel 72.4 11 0.00023 44.0 7.8 80 7-101 7-87 (607)
344 TIGR02767 TraG-Ti Ti-type conj 72.4 2.3 5E-05 49.3 2.3 23 40-62 212-234 (623)
345 PLN00206 DEAD-box ATP-dependen 72.4 11 0.00024 43.0 7.8 73 284-368 367-443 (518)
346 KOG1133|consensus 72.3 3.4 7.4E-05 47.4 3.5 43 24-66 15-61 (821)
347 smart00382 AAA ATPases associa 72.1 1.8 3.9E-05 38.3 1.1 15 39-53 2-16 (148)
348 PRK01297 ATP-dependent RNA hel 71.7 14 0.00031 41.4 8.5 73 283-368 334-410 (475)
349 PRK14952 DNA polymerase III su 71.7 9.3 0.0002 44.1 7.0 39 360-405 117-155 (584)
350 PRK08181 transposase; Validate 71.6 3.4 7.4E-05 42.8 3.2 39 15-53 75-120 (269)
351 cd00079 HELICc Helicase superf 71.4 23 0.0005 31.2 8.3 76 283-371 27-106 (131)
352 PRK05580 primosome assembly pr 71.4 47 0.001 39.3 12.9 66 24-101 144-212 (679)
353 PRK14964 DNA polymerase III su 71.4 10 0.00022 42.9 7.0 23 250-272 34-56 (491)
354 PRK10917 ATP-dependent DNA hel 71.4 28 0.00062 41.1 11.1 80 11-103 248-334 (681)
355 PRK06835 DNA replication prote 71.4 23 0.00051 37.8 9.5 133 293-432 161-317 (329)
356 PRK11634 ATP-dependent RNA hel 70.9 13 0.00028 43.5 8.0 71 284-367 245-319 (629)
357 TIGR03015 pepcterm_ATPase puta 70.4 4.5 9.7E-05 41.4 3.8 44 225-272 21-64 (269)
358 KOG0329|consensus 70.4 2.8 6E-05 42.5 2.0 41 212-271 59-99 (387)
359 PF12775 AAA_7: P-loop contain 70.2 2 4.3E-05 44.6 1.1 19 36-54 30-48 (272)
360 PF01078 Mg_chelatase: Magnesi 70.1 2.6 5.5E-05 41.8 1.7 18 37-54 20-37 (206)
361 PRK13822 conjugal transfer cou 70.1 2.9 6.2E-05 48.8 2.4 23 40-62 225-247 (641)
362 PRK07952 DNA replication prote 70.1 9.6 0.00021 38.9 6.0 21 252-272 100-120 (244)
363 KOG0386|consensus 69.7 1.8 3.9E-05 51.5 0.7 115 249-375 411-529 (1157)
364 KOG3089|consensus 69.6 3.8 8.3E-05 40.5 2.8 32 337-368 196-227 (271)
365 PRK14956 DNA polymerase III su 69.5 7.6 0.00016 43.6 5.4 20 253-272 42-61 (484)
366 KOG0347|consensus 69.4 2.5 5.5E-05 47.2 1.7 42 213-272 199-240 (731)
367 CHL00181 cbbX CbbX; Provisiona 69.3 17 0.00037 38.1 7.8 21 251-271 59-79 (287)
368 PTZ00424 helicase 45; Provisio 69.0 17 0.00036 39.7 8.1 72 284-368 267-342 (401)
369 PRK12377 putative replication 68.8 9 0.0002 39.2 5.5 22 251-272 101-122 (248)
370 PRK14961 DNA polymerase III su 68.6 9.2 0.0002 41.5 5.8 21 252-272 39-59 (363)
371 PRK14962 DNA polymerase III su 68.5 17 0.00037 40.9 8.1 22 251-272 36-57 (472)
372 PRK05298 excinuclease ABC subu 68.3 36 0.00078 40.0 11.0 78 282-372 444-525 (652)
373 COG4098 comFA Superfamily II D 68.2 17 0.00037 38.7 7.2 83 283-376 304-388 (441)
374 COG5008 PilU Tfp pilus assembl 68.1 4 8.7E-05 41.9 2.6 17 39-55 127-143 (375)
375 PRK14963 DNA polymerase III su 68.0 7.8 0.00017 44.0 5.3 20 253-272 38-57 (504)
376 KOG0926|consensus 67.9 3.7 8E-05 47.9 2.6 55 464-519 632-704 (1172)
377 PRK14723 flhF flagellar biosyn 67.3 17 0.00037 43.1 8.0 23 250-272 184-206 (767)
378 PRK14951 DNA polymerase III su 67.2 9.8 0.00021 44.2 5.9 21 252-272 39-59 (618)
379 cd01131 PilT Pilus retraction 67.1 2.5 5.3E-05 41.7 0.9 15 41-55 3-17 (198)
380 PF13555 AAA_29: P-loop contai 67.0 2.9 6.3E-05 33.1 1.1 17 38-54 22-38 (62)
381 TIGR01389 recQ ATP-dependent D 66.5 19 0.0004 41.8 8.2 73 15-102 3-76 (591)
382 TIGR03158 cas3_cyano CRISPR-as 66.4 27 0.00057 37.8 8.9 57 28-99 1-59 (357)
383 COG1224 TIP49 DNA helicase TIP 66.4 2.8 6E-05 44.7 1.2 24 38-62 64-87 (450)
384 PRK05703 flhF flagellar biosyn 66.0 22 0.00048 39.4 8.3 133 250-421 220-355 (424)
385 PRK09111 DNA polymerase III su 66.0 13 0.00028 43.1 6.7 23 250-272 45-67 (598)
386 PRK09183 transposase/IS protei 65.6 3.7 8.1E-05 42.3 2.0 39 15-53 72-116 (259)
387 TIGR02788 VirB11 P-type DNA tr 65.5 3.1 6.8E-05 44.0 1.4 18 36-53 141-158 (308)
388 cd01363 Motor_domain Myosin an 65.1 5.4 0.00012 38.8 2.9 27 31-57 14-42 (186)
389 KOG1533|consensus 65.0 4.7 0.0001 40.6 2.4 24 42-66 5-28 (290)
390 PRK05973 replicative DNA helic 64.8 4.9 0.00011 40.9 2.6 47 7-53 23-78 (237)
391 PRK07994 DNA polymerase III su 64.6 8.4 0.00018 44.9 4.8 31 360-391 118-148 (647)
392 PRK05707 DNA polymerase III su 64.5 14 0.0003 39.6 6.1 41 360-407 105-145 (328)
393 PRK06835 DNA replication prote 64.5 6.4 0.00014 42.1 3.5 17 38-54 182-198 (329)
394 PRK04195 replication factor C 64.3 11 0.00024 42.5 5.7 21 250-270 38-58 (482)
395 KOG0745|consensus 64.0 3.3 7.2E-05 45.2 1.3 18 37-54 224-241 (564)
396 TIGR03819 heli_sec_ATPase heli 63.9 7.9 0.00017 41.6 4.1 39 14-54 154-193 (340)
397 PRK14957 DNA polymerase III su 63.1 13 0.00028 42.6 5.8 39 360-405 118-156 (546)
398 PF13401 AAA_22: AAA domain; P 62.8 3.5 7.5E-05 37.0 1.0 17 38-54 3-19 (131)
399 PRK06921 hypothetical protein; 62.8 9.2 0.0002 39.6 4.2 16 38-53 116-131 (266)
400 TIGR01970 DEAH_box_HrpB ATP-de 62.7 23 0.00049 42.7 8.1 73 284-366 209-285 (819)
401 PRK07414 cob(I)yrinic acid a,c 62.5 64 0.0014 31.3 9.6 53 359-418 113-167 (178)
402 TIGR03689 pup_AAA proteasome A 62.3 29 0.00062 39.5 8.3 133 246-433 211-366 (512)
403 PRK07471 DNA polymerase III su 61.1 17 0.00036 39.5 6.0 22 251-272 41-62 (365)
404 TIGR02880 cbbX_cfxQ probable R 61.1 28 0.0006 36.4 7.5 98 250-407 57-169 (284)
405 PRK09112 DNA polymerase III su 61.0 11 0.00023 40.8 4.5 39 360-405 140-178 (351)
406 PRK08691 DNA polymerase III su 60.9 15 0.00032 43.2 5.8 23 250-272 37-59 (709)
407 PRK12402 replication factor C 60.9 17 0.00036 38.5 6.0 119 246-405 31-162 (337)
408 KOG1969|consensus 60.6 25 0.00054 41.2 7.3 32 239-270 314-345 (877)
409 KOG1942|consensus 60.5 4.4 9.5E-05 42.1 1.3 27 37-64 62-88 (456)
410 COG0606 Predicted ATPase with 60.5 5.7 0.00012 44.1 2.3 26 36-61 195-225 (490)
411 COG0556 UvrB Helicase subunit 60.1 46 0.001 37.6 9.1 117 282-416 444-564 (663)
412 COG0470 HolB ATPase involved i 59.7 14 0.00031 38.7 5.2 40 360-406 108-147 (325)
413 PRK06904 replicative DNA helic 59.6 30 0.00065 39.0 7.9 22 40-62 221-243 (472)
414 PHA03333 putative ATPase subun 59.5 46 0.001 39.0 9.3 55 251-309 187-241 (752)
415 PF07728 AAA_5: AAA domain (dy 59.5 4.2 9.1E-05 37.1 1.0 13 41-53 1-13 (139)
416 KOG1123|consensus 59.3 3.6 7.7E-05 45.5 0.5 65 462-526 589-660 (776)
417 KOG0991|consensus 59.2 12 0.00025 37.9 3.9 31 359-390 111-141 (333)
418 PRK06645 DNA polymerase III su 59.1 35 0.00076 38.8 8.3 23 250-272 42-64 (507)
419 PRK13341 recombination factor 59.1 19 0.0004 42.8 6.4 20 251-270 52-71 (725)
420 COG4626 Phage terminase-like p 58.9 15 0.00033 41.5 5.3 130 254-406 89-223 (546)
421 PRK00771 signal recognition pa 58.5 38 0.00082 37.8 8.3 24 249-272 93-116 (437)
422 PLN00020 ribulose bisphosphate 58.2 5.3 0.00011 43.3 1.5 43 225-268 122-165 (413)
423 TIGR03015 pepcterm_ATPase puta 58.1 8 0.00017 39.5 2.9 30 24-53 23-57 (269)
424 PF12846 AAA_10: AAA-like doma 58.1 5.2 0.00011 41.3 1.5 26 40-66 2-27 (304)
425 PRK12726 flagellar biosynthesi 57.9 65 0.0014 35.3 9.7 25 248-272 203-227 (407)
426 PF13207 AAA_17: AAA domain; P 57.6 5 0.00011 35.5 1.1 12 42-53 2-13 (121)
427 PRK14969 DNA polymerase III su 57.5 20 0.00044 40.9 6.2 39 360-405 118-156 (527)
428 TIGR01547 phage_term_2 phage t 57.1 14 0.00031 40.4 4.7 136 254-410 4-142 (396)
429 PRK08451 DNA polymerase III su 57.0 22 0.00047 40.6 6.3 39 360-405 116-154 (535)
430 PRK12727 flagellar biosynthesi 56.8 9.8 0.00021 43.2 3.4 53 4-56 301-367 (559)
431 PF13671 AAA_33: AAA domain; P 56.8 5.2 0.00011 36.5 1.1 12 42-53 2-13 (143)
432 PRK14729 miaA tRNA delta(2)-is 56.7 4.9 0.00011 42.4 1.0 13 41-53 6-18 (300)
433 TIGR03420 DnaA_homol_Hda DnaA 56.6 8.1 0.00018 38.3 2.6 16 38-53 37-52 (226)
434 PRK14965 DNA polymerase III su 56.5 31 0.00067 39.9 7.5 39 360-405 118-156 (576)
435 PRK14721 flhF flagellar biosyn 56.4 23 0.0005 39.2 6.2 23 399-421 302-324 (420)
436 PRK11664 ATP-dependent RNA hel 56.0 35 0.00076 41.2 8.1 73 284-366 212-288 (812)
437 PRK05564 DNA polymerase III su 56.0 23 0.00049 37.4 5.9 39 360-405 92-130 (313)
438 PRK06995 flhF flagellar biosyn 55.7 37 0.0008 38.3 7.7 23 250-272 255-277 (484)
439 PRK05703 flhF flagellar biosyn 55.7 8 0.00017 42.9 2.5 18 38-55 220-237 (424)
440 PRK14959 DNA polymerase III su 55.6 26 0.00057 40.7 6.6 22 251-272 38-59 (624)
441 PF05876 Terminase_GpA: Phage 55.5 10 0.00022 43.6 3.4 114 249-375 31-148 (557)
442 PHA03368 DNA packaging termina 55.5 19 0.00042 41.8 5.5 142 246-410 249-392 (738)
443 PRK05563 DNA polymerase III su 55.5 21 0.00046 41.1 6.0 22 251-272 38-59 (559)
444 KOG1015|consensus 55.5 54 0.0012 39.6 8.9 145 261-416 706-867 (1567)
445 TIGR01587 cas3_core CRISPR-ass 55.4 55 0.0012 35.0 8.9 52 41-102 1-52 (358)
446 KOG0326|consensus 55.2 3.9 8.5E-05 42.8 -0.0 41 211-270 101-141 (459)
447 PF00448 SRP54: SRP54-type pro 54.8 5.8 0.00012 39.1 1.1 14 42-55 4-17 (196)
448 cd01365 KISc_KIF1A_KIF1B Kines 54.7 21 0.00046 38.5 5.6 25 33-57 81-107 (356)
449 KOG0058|consensus 54.7 23 0.00049 41.4 5.9 33 359-391 620-652 (716)
450 PF00004 AAA: ATPase family as 54.5 5.6 0.00012 35.4 0.9 16 362-377 59-74 (132)
451 PRK08769 DNA polymerase III su 54.5 28 0.00061 37.0 6.3 42 360-408 112-153 (319)
452 cd01122 GP4d_helicase GP4d_hel 54.5 2.9 6.2E-05 43.1 -1.2 43 11-53 2-44 (271)
453 KOG0742|consensus 54.0 21 0.00046 38.9 5.1 19 249-267 382-400 (630)
454 PRK09694 helicase Cas3; Provis 54.0 50 0.0011 40.1 8.9 78 282-370 558-647 (878)
455 PRK14948 DNA polymerase III su 53.9 24 0.00053 41.1 6.2 21 252-272 39-59 (620)
456 PRK13531 regulatory ATPase Rav 53.8 7.3 0.00016 43.7 1.8 20 35-54 35-54 (498)
457 cd01369 KISc_KHC_KIF5 Kinesin 53.6 10 0.00023 40.3 2.9 25 32-56 68-94 (325)
458 PF13238 AAA_18: AAA domain; P 53.6 6.3 0.00014 34.9 1.1 12 42-53 1-12 (129)
459 PRK09376 rho transcription ter 53.5 63 0.0014 35.5 8.7 12 364-375 259-270 (416)
460 TIGR00064 ftsY signal recognit 53.1 77 0.0017 32.9 9.2 37 250-291 71-107 (272)
461 PHA02653 RNA helicase NPH-II; 53.0 41 0.00089 39.6 7.8 72 284-366 395-469 (675)
462 PF00225 Kinesin: Kinesin moto 52.9 13 0.00027 39.8 3.4 40 33-72 67-115 (335)
463 PF04665 Pox_A32: Poxvirus A32 52.4 5.9 0.00013 40.4 0.7 21 41-62 15-35 (241)
464 cd01368 KISc_KIF23_like Kinesi 52.4 11 0.00024 40.5 2.9 25 33-57 81-107 (345)
465 PRK13767 ATP-dependent helicas 52.3 44 0.00095 40.8 8.2 86 9-98 18-103 (876)
466 KOG0701|consensus 52.2 6.9 0.00015 49.6 1.4 243 251-507 135-399 (1606)
467 PLN03137 ATP-dependent DNA hel 52.2 60 0.0013 40.4 9.1 76 9-99 444-520 (1195)
468 cd01376 KISc_KID_like Kinesin 52.1 12 0.00027 39.7 3.2 25 33-57 73-99 (319)
469 PRK08939 primosomal protein Dn 52.0 58 0.0012 34.5 8.1 23 250-272 155-177 (306)
470 KOG1513|consensus 51.7 21 0.00046 41.9 5.0 139 250-408 288-454 (1300)
471 PRK09183 transposase/IS protei 51.6 54 0.0012 33.7 7.7 22 250-271 101-122 (259)
472 PRK08058 DNA polymerase III su 51.6 34 0.00073 36.6 6.4 40 360-406 109-148 (329)
473 KOG0336|consensus 51.5 6.9 0.00015 42.3 1.1 41 212-271 237-277 (629)
474 PHA00729 NTP-binding motif con 51.5 38 0.00083 34.2 6.3 111 253-419 19-138 (226)
475 PRK11034 clpA ATP-dependent Cl 51.3 18 0.0004 43.1 4.7 20 250-269 206-225 (758)
476 KOG0346|consensus 51.3 6.6 0.00014 42.9 0.9 41 213-272 37-77 (569)
477 PF14532 Sigma54_activ_2: Sigm 51.1 11 0.00024 34.5 2.3 20 35-54 17-36 (138)
478 PHA02244 ATPase-like protein 50.9 12 0.00026 40.6 2.8 19 35-53 115-133 (383)
479 PRK06871 DNA polymerase III su 50.7 32 0.0007 36.7 6.0 41 360-407 106-146 (325)
480 PF02463 SMC_N: RecF/RecN/SMC 50.5 11 0.00025 37.2 2.5 42 360-407 157-198 (220)
481 PRK03992 proteasome-activating 50.3 23 0.00049 38.8 5.0 101 249-405 163-277 (389)
482 TIGR01425 SRP54_euk signal rec 50.3 70 0.0015 35.5 8.7 23 250-272 99-121 (429)
483 TIGR03743 SXT_TraD conjugative 50.1 8.1 0.00018 45.1 1.5 26 39-64 176-201 (634)
484 KOG0334|consensus 50.1 9.1 0.0002 46.0 1.9 41 213-272 383-423 (997)
485 PLN02796 D-glycerate 3-kinase 49.9 19 0.00042 38.6 4.2 13 42-54 103-115 (347)
486 TIGR01241 FtsH_fam ATP-depende 49.8 77 0.0017 35.9 9.3 124 246-433 83-226 (495)
487 TIGR03346 chaperone_ClpB ATP-d 49.7 39 0.00084 41.1 7.2 21 249-269 192-212 (852)
488 cd01367 KISc_KIF2_like Kinesin 49.7 13 0.00027 39.7 2.8 25 33-57 77-103 (322)
489 cd00106 KISc Kinesin motor dom 49.6 33 0.00072 36.4 6.0 28 31-58 69-98 (328)
490 cd01370 KISc_KIP3_like Kinesin 49.6 14 0.0003 39.7 3.1 23 34-56 81-105 (338)
491 PTZ00454 26S protease regulato 49.5 8.5 0.00018 42.3 1.5 16 39-54 179-194 (398)
492 PRK07399 DNA polymerase III su 49.4 41 0.00089 35.7 6.6 22 251-272 26-47 (314)
493 PRK05896 DNA polymerase III su 49.4 44 0.00096 38.7 7.2 22 251-272 38-59 (605)
494 PRK12723 flagellar biosynthesi 49.1 18 0.0004 39.5 4.0 18 39-56 174-191 (388)
495 cd01374 KISc_CENP_E Kinesin mo 48.8 14 0.0003 39.3 2.9 25 33-57 66-92 (321)
496 CHL00176 ftsH cell division pr 48.7 96 0.0021 36.4 9.9 23 248-270 213-235 (638)
497 TIGR02868 CydC thiol reductant 48.6 17 0.00036 41.5 3.7 27 246-272 356-382 (529)
498 KOG0090|consensus 48.4 12 0.00026 37.3 2.1 20 39-58 38-57 (238)
499 PRK12724 flagellar biosynthesi 48.4 1E+02 0.0023 34.1 9.6 58 360-420 298-356 (432)
500 cd00984 DnaB_C DnaB helicase C 48.4 9.4 0.0002 38.4 1.5 24 38-62 12-35 (242)
No 1
>KOG0349|consensus
Probab=100.00 E-value=1.2e-150 Score=1149.79 Aligned_cols=628 Identities=62% Similarity=1.054 Sum_probs=594.4
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|+||+|+|+.|||..|.++|+|.+||++|+||||+||+|+||||+|+||||||+||+||+||+|+|++++..+++...+.
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998886454
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
..-.....|.|+.+||+.++||++||+.||||..++|+|||+|.|+.|+||||||+|++|+|||||||||..+++|+||+
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred ccCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcc
Confidence 44445556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
..+||||||||||+|+|||+|||||+.+||||||||+|+++|+|||||+.||.||++|.++.|+.|||||++||+|++||
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349|consen 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred ccccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccc--cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESAD--VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRE 318 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~--~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v 318 (651)
||.+||++||...+++.++++-+-+.+.+..- +.....++.++.|+++|+.|+||||+|+++.+++|..++++|.++.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349|consen 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred cCCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhh
Confidence 99999999999999999999999777765543 5555667789999999999999999999999999999999999999
Q ss_pred EEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 319 LLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 319 ~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.+++||.-...|...++.+.||+||||+|+.+++.++.+.+.++++||+||||.++.+++-+.|.++...+|+..+++.+
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~r 400 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFR 400 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHH---------------------
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL--------------------- 457 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l--------------------- 457 (651)
.|.+++|||++..+|..+.+++|..|.|+++.+++..+++++|+++.+++.-+..|..+
T Consensus 401 lq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~S 480 (725)
T KOG0349|consen 401 LQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVS 480 (725)
T ss_pred cccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCC
Confidence 99999999999999999999999999999999999999999998887765532222222
Q ss_pred -------------------------------------------------------------------------hhccccc
Q psy8712 458 -------------------------------------------------------------------------RSHIQTD 464 (651)
Q Consensus 458 -------------------------------------------------------------------------~~~~~~~ 464 (651)
++...+.
T Consensus 481 pe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk 560 (725)
T KOG0349|consen 481 PENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK 560 (725)
T ss_pred CCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE
Confidence 2333445
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCccccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTD 544 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~ 544 (651)
.+.|||+++|||||.++.++||..+|.+..+|+|||||+||+.+.|.||+|+...+|++||| .|.+|++.|.|++|.+
T Consensus 561 flictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh--~c~srgr~c~nt~l~e 638 (725)
T KOG0349|consen 561 FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH--WCKSRGRSCNNTNLTE 638 (725)
T ss_pred EEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeeh--hhhccCCcccCCcccc
Confidence 56678999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccccCCcccCCCceeecceecccCccchhhHhhhh
Q psy8712 545 VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQME 624 (651)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 624 (651)
..| |+|||+|+.+|.+||+|+|++|.++++++++|+++|+++|+||+++..+++.|++|++.+.
T Consensus 639 ~~g----------------c~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~ygqk~~~~g~~y~~hv~~l~ 702 (725)
T KOG0349|consen 639 VRG----------------CCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHVEQLV 702 (725)
T ss_pred ccc----------------eEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEecccccccCCCccchHHHhh
Confidence 988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy8712 625 PSVNKLSKLESKAQLIYLKHHQ 646 (651)
Q Consensus 625 ~~~~el~~le~~~~~~~~~~~~ 646 (651)
+.|.+|.+||.+.|..||...+
T Consensus 703 ptv~~l~~le~~sqs~fl~~~~ 724 (725)
T KOG0349|consen 703 PTVRKLTELELQSQSLFLKRLK 724 (725)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998764
No 2
>KOG0330|consensus
Probab=100.00 E-value=5.5e-66 Score=524.48 Aligned_cols=293 Identities=34% Similarity=0.542 Sum_probs=266.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
-+|.+|||+|+++++++++||..||+||++|||.+|+|+||+..|+||||||+||+||++|.+++.
T Consensus 61 ~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------------- 126 (476)
T KOG0330|consen 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-------------- 126 (476)
T ss_pred cchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC--------------
Confidence 369999999999999999999999999999999999999999999999999999999999998870
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 127 -------------------------------------------------------------------------------- 126 (476)
T KOG0330|consen 127 -------------------------------------------------------------------------------- 126 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 127 -------------------------------------------------------------------------------- 126 (476)
T KOG0330|consen 127 -------------------------------------------------------------------------------- 126 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
+..+++|||+||||||.||.++++.++..++ +++.++
T Consensus 127 ----------------------------------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~l 163 (476)
T KOG0330|consen 127 ----------------------------------------PKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVL 163 (476)
T ss_pred ----------------------------------------CCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEE
Confidence 2236899999999999999999999998776 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHh-CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS-GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~-~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.||.+...|...|.+.|||||+|||+|.+++. .+.++++++++||+||||+++++.|.+.+..|++.+|. .+|
T Consensus 164 vGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~------erq 237 (476)
T KOG0330|consen 164 VGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR------ERQ 237 (476)
T ss_pred ecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc------cce
Confidence 99999999999999999999999999999998 67889999999999999999999999999999999997 799
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcch-------------------------HHHHH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ-------------------------DETWG 455 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~-------------------------~~~~~ 455 (651)
+++|||||+. .+.++....+.+|+.|.+.....+.+.+.|.|.+++... ...+.
T Consensus 238 t~LfsATMt~-kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~l 316 (476)
T KOG0330|consen 238 TFLFSATMTK-KVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFL 316 (476)
T ss_pred EEEEEeecch-hhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHH
Confidence 9999999997 999999999999999999888888888877776665432 11111
Q ss_pred HH---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 456 RL---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 456 ~l---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.+ +.....++++|||+.+||+|+|.|++|||||+|.+..+||||+||+||+|+
T Consensus 317 a~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 317 ALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred HHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC
Confidence 11 344567889999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
+|.+|+||+.
T Consensus 397 sG~~ItlVtq 406 (476)
T KOG0330|consen 397 SGKAITLVTQ 406 (476)
T ss_pred CcceEEEEeh
Confidence 9999999997
No 3
>KOG0331|consensus
Probab=100.00 E-value=1.4e-61 Score=522.63 Aligned_cols=299 Identities=33% Similarity=0.543 Sum_probs=262.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|+++++++++.++|...||..|||||+.+||.++.|+|++..|.||||||+||+||+++.+.+..
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~-------------- 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ-------------- 157 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--------------
Confidence 699999999999999999999999999999999999999999999999999999999999887610
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 158 -------------------------------------------------------------------------------- 157 (519)
T KOG0331|consen 158 -------------------------------------------------------------------------------- 157 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 158 -------------------------------------------------------------------------------- 157 (519)
T KOG0331|consen 158 -------------------------------------------------------------------------------- 157 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
......++|++|||+||||||.|+.+.+..++..+. +++.|++
T Consensus 158 ----------------------------------~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~---~~~~cvy 200 (519)
T KOG0331|consen 158 ----------------------------------GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLR---LRSTCVY 200 (519)
T ss_pred ----------------------------------ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCC---ccEEEEe
Confidence 001124589999999999999999999999998776 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+...|...|++++||+|+|||||.+++..+.++++++.++|+||||+|+++||.++++.|+..+|.. ..|++
T Consensus 201 GG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~-----~rQtl 275 (519)
T KOG0331|consen 201 GGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP-----DRQTL 275 (519)
T ss_pred CCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC-----cccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999653 45999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCC--CccCceE----------------------------EEEEEeCcchH-
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGED--AVPETVH----------------------------HVVVKIDPQQD- 451 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~--~~~~~i~----------------------------~~~~~~~~~~~- 451 (651)
++|||+|. .|+.++..|+.+|..+.+...+ ....+|. .+++||+.++.
T Consensus 276 m~saTwp~-~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 276 MFSATWPK-EVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred EEeeeccH-HHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 99999997 9999999999999999887553 2223333 35666665432
Q ss_pred -HHHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 452 -ETWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 452 -~~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
++...+ ++.-+..+|+|||+++||||||+|++|||||+|.+.++|+||+|||||
T Consensus 355 ~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 355 DELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred HHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcccc
Confidence 111111 333455667789999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeC
Q psy8712 506 AERMGLAISLVST 518 (651)
Q Consensus 506 ~g~~G~ai~lv~~ 518 (651)
+|++|.|++|++.
T Consensus 435 a~~~G~A~tfft~ 447 (519)
T KOG0331|consen 435 AGKKGTAITFFTS 447 (519)
T ss_pred CCCCceEEEEEeH
Confidence 9999999999998
No 4
>KOG0338|consensus
Probab=100.00 E-value=1.4e-60 Score=497.69 Aligned_cols=296 Identities=31% Similarity=0.497 Sum_probs=265.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|.+|+|+..|++++..+||..|||||..+||..|-|+|+|.+|-||||||.||+||+|.+++...+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------------ 248 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------------ 248 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------------
Confidence 47999999999999999999999999999999999999999999999999999999999999876100
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 249 -------------------------------------------------------------------------------- 248 (691)
T KOG0338|consen 249 -------------------------------------------------------------------------------- 248 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 249 -------------------------------------------------------------------------------- 248 (691)
T KOG0338|consen 249 -------------------------------------------------------------------------------- 248 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.....++|||+||||||.|++++.++++.+.+ |.+.++
T Consensus 249 ---------------------------------------~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~---I~~~L~ 286 (691)
T KOG0338|consen 249 ---------------------------------------KVAATRVLVLVPTRELAIQVHSVTKQLAQFTD---ITVGLA 286 (691)
T ss_pred ---------------------------------------cCcceeEEEEeccHHHHHHHHHHHHHHHhhcc---ceeeee
Confidence 01134899999999999999999999999987 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||-+.+.|...|+..|||||+|||||.|++++ ..+.+++|..||+||||+||+.+|.+++..|++.+|+ ++|
T Consensus 287 vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk------~RQ 360 (691)
T KOG0338|consen 287 VGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPK------NRQ 360 (691)
T ss_pred ecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccc------ccc
Confidence 999999999999999999999999999999976 5789999999999999999999999999999999999 799
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE----------------------------EEEEeCcchHH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH----------------------------VVVKIDPQQDE 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~----------------------------~~~~~~~~~~~ 452 (651)
+++|||||+. .|.+|+..-++.|+.|.+.+.......+.| .++|+.+++..
T Consensus 361 TmLFSATMte-eVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~A 439 (691)
T KOG0338|consen 361 TMLFSATMTE-EVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQA 439 (691)
T ss_pred ceeehhhhHH-HHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHH
Confidence 9999999997 999999999999999998887766555544 34444443321
Q ss_pred HH---------------------------HHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 453 TW---------------------------GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 453 ~~---------------------------~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
.- ...++..+++.+.+||.++|||||++|..||||++|.+.+.|+||+|||+|
T Consensus 440 HRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 440 HRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred HHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 11 111566788999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeC
Q psy8712 506 AERMGLAISLVST 518 (651)
Q Consensus 506 ~g~~G~ai~lv~~ 518 (651)
+|+.|.+++|+.+
T Consensus 520 AGRaGrsVtlvgE 532 (691)
T KOG0338|consen 520 AGRAGRSVTLVGE 532 (691)
T ss_pred cccCcceEEEecc
Confidence 9999999999998
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-59 Score=525.15 Aligned_cols=295 Identities=38% Similarity=0.605 Sum_probs=264.4
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
.|++|++.++++++|.++||..|||||+.+||.+|.|+||++.|+||||||+||+||+|+.+... .
T Consensus 30 ~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--------~------ 95 (513)
T COG0513 30 EFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--------V------ 95 (513)
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--------c------
Confidence 59999999999999999999999999999999999999999999999999999999999986540 0
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (513)
T COG0513 96 -------------------------------------------------------------------------------- 95 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (513)
T COG0513 96 -------------------------------------------------------------------------------- 95 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
....+.+|||+||||||.|+++.+..++++.. ++++.+++
T Consensus 96 --------------------------------------~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~--~~~~~~i~ 135 (513)
T COG0513 96 --------------------------------------ERKYVSALILAPTRELAVQIAEELRKLGKNLG--GLRVAVVY 135 (513)
T ss_pred --------------------------------------ccCCCceEEECCCHHHHHHHHHHHHHHHhhcC--CccEEEEE
Confidence 00011299999999999999999999999873 38999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+...|...|++++||||+||||++|++..+.+++++++++|+||||+|+++||.+++..|+..+|. +.|++
T Consensus 136 GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~------~~qtl 209 (513)
T COG0513 136 GGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP------DRQTL 209 (513)
T ss_pred CCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc------ccEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCC--ccCceEEEEEEeCcch--HHHHHH----------------------
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDA--VPETVHHVVVKIDPQQ--DETWGR---------------------- 456 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~--~~~~i~~~~~~~~~~~--~~~~~~---------------------- 456 (651)
+||||+++ .+..+++.++++|..+.+..... ....|.|.++.++... ...+..
T Consensus 210 lfSAT~~~-~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~ 288 (513)
T COG0513 210 LFSATMPD-DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEE 288 (513)
T ss_pred EEecCCCH-HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 99999998 89999999999999998886555 8889999999888643 111111
Q ss_pred ----H-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 457 ----L-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 457 ----l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+ ++.....++++||.++||||||+|++|||||+|.++++|+||+|||||+|
T Consensus 289 l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 289 LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC
Confidence 1 23345566778999999999999999999999999999999999999999
Q ss_pred CceEEEEeeeC
Q psy8712 508 RMGLAISLVST 518 (651)
Q Consensus 508 ~~G~ai~lv~~ 518 (651)
+.|.+++|+.+
T Consensus 369 ~~G~ai~fv~~ 379 (513)
T COG0513 369 RKGVAISFVTE 379 (513)
T ss_pred CCCeEEEEeCc
Confidence 99999999997
No 6
>KOG0328|consensus
Probab=100.00 E-value=1.7e-59 Score=458.85 Aligned_cols=316 Identities=30% Similarity=0.533 Sum_probs=285.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|||..++++++.+.||..|+.||+.|||.|+.|+||+++|..|+|||.+|.+.+||.+.-
T Consensus 27 ~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~--------------- 91 (400)
T KOG0328|consen 27 PTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI--------------- 91 (400)
T ss_pred cchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---------------
Confidence 58999999999999999999999999999999999999999999999999999999999985432
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (400)
T KOG0328|consen 92 -------------------------------------------------------------------------------- 91 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (400)
T KOG0328|consen 92 -------------------------------------------------------------------------------- 91 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..+..|+|||+||||||.|+.+++..++.+++ +++..+
T Consensus 92 ---------------------------------------~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn---vq~hac 129 (400)
T KOG0328|consen 92 ---------------------------------------SVRETQALILSPTRELAVQIQKVILALGDYMN---VQCHAC 129 (400)
T ss_pred ---------------------------------------ccceeeEEEecChHHHHHHHHHHHHHhccccc---ceEEEE
Confidence 01234899999999999999999999999987 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+..+.+..+.-+.|++.|||||++++++.+.+..+.+++||+||||.|++.||..++..|++.+|+ ..|+
T Consensus 130 igg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~------~~Qv 203 (400)
T KOG0328|consen 130 IGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP------GAQV 203 (400)
T ss_pred ecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC------CceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCc--------------------------chHHHHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDP--------------------------QQDETWG 455 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~--------------------------~~~~~~~ 455 (651)
+++|||+|. ++.++.++||.+|+.+-+++.+...+.|+|+++.++. +.+-.|.
T Consensus 204 v~~SATlp~-eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwL 282 (400)
T KOG0328|consen 204 VLVSATLPH-EILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 282 (400)
T ss_pred EEEeccCcH-HHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHH
Confidence 999999996 9999999999999999999888877766666555544 3322222
Q ss_pred HH---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 456 RL---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 456 ~l---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.- ++..+..++.+||..+||||+|.|++|||||+|.+.+.|+|||||.||+|+
T Consensus 283 tekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGR 362 (400)
T KOG0328|consen 283 TEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 362 (400)
T ss_pred HHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCC
Confidence 11 344456677789999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
+|.||.|+.. +|.+.|++||+++...|.++
T Consensus 363 kGvainFVk~--------------------------------------------------~d~~~lrdieq~yst~i~em 392 (400)
T KOG0328|consen 363 KGVAINFVKS--------------------------------------------------DDLRILRDIEQYYSTQIDEM 392 (400)
T ss_pred cceEEEEecH--------------------------------------------------HHHHHHHHHHHHHhhhcccc
Confidence 9999999987 78999999999999999988
Q ss_pred ccc
Q psy8712 589 DDK 591 (651)
Q Consensus 589 ~~~ 591 (651)
|..
T Consensus 393 p~n 395 (400)
T KOG0328|consen 393 PMN 395 (400)
T ss_pred cch
Confidence 755
No 7
>KOG0333|consensus
Probab=100.00 E-value=7.6e-58 Score=479.04 Aligned_cols=317 Identities=32% Similarity=0.489 Sum_probs=279.0
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|.+|||.|++.++++++.+.||..|||||..|||+.+..+|+|..|+||||||+||++|+|..+..+.+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~----------- 312 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPP----------- 312 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCC-----------
Confidence 578999999999999999999999999999999999999999999999999999999999997755100
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 313 -------------------------------------------------------------------------------- 312 (673)
T KOG0333|consen 313 -------------------------------------------------------------------------------- 312 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 313 -------------------------------------------------------------------------------- 312 (673)
T KOG0333|consen 313 -------------------------------------------------------------------------------- 312 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
+ .+......+|.++||+||||||+||.+...+|++.+. ++++.
T Consensus 313 -----------~-----------------------~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg---~r~vs 355 (673)
T KOG0333|consen 313 -----------M-----------------------ARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG---IRTVS 355 (673)
T ss_pred -----------c-----------------------chhhhcccCceeeeechHHHHHHHHHHHHHHhccccc---ceEEE
Confidence 0 0000123578999999999999999999999999886 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCC-----
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSD----- 395 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~----- 395 (651)
++||.+.++|--.|..+|+|+|+||++|.+.+.+..+.++++.+||+||||+|+|+||.+++..++..+|.....
T Consensus 356 vigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde 435 (673)
T KOG0333|consen 356 VIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDE 435 (673)
T ss_pred EecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccc
Confidence 999999999988899999999999999999999999999999999999999999999999999999999975432
Q ss_pred --CCc------------eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchH----------
Q psy8712 396 --GKR------------LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD---------- 451 (651)
Q Consensus 396 --~~~------------~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~---------- 451 (651)
+.. +|+++||||+++ .+..+++.++++|+++.+.......+.++|.++.+...++
T Consensus 436 ~~~~~~~~~~~~~~k~yrqT~mftatm~p-~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~ 514 (673)
T KOG0333|consen 436 KEGEERVRKNFSSSKKYRQTVMFTATMPP-AVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILES 514 (673)
T ss_pred hhhHHHHHhhcccccceeEEEEEecCCCh-HHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHh
Confidence 222 899999999998 9999999999999999999888888888887776654331
Q ss_pred ------------------------------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCC
Q psy8712 452 ------------------------------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTL 489 (651)
Q Consensus 452 ------------------------------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl 489 (651)
+.....++....++++|||++.||||||||++|||||+
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch
Confidence 11111134445677889999999999999999999999
Q ss_pred CCChhhhhhhcCccccCCCceEEEEeeeCCccccccc
Q psy8712 490 PDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 490 P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~ 526 (651)
+.++++|+||||||||+|+.|.|++|++++|..+||.
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 9999999999999999999999999999999888887
No 8
>KOG0326|consensus
Probab=100.00 E-value=4.2e-58 Score=455.57 Aligned_cols=316 Identities=31% Similarity=0.522 Sum_probs=283.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
.||+++|.++|+..+-++||..|+|||.++||..|.|+|+|+.|..|+|||.||++|+|..+..
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~---------------- 149 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP---------------- 149 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc----------------
Confidence 5999999999999999999999999999999999999999999999999999999999985532
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (459)
T KOG0326|consen 150 -------------------------------------------------------------------------------- 149 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (459)
T KOG0326|consen 150 -------------------------------------------------------------------------------- 149 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
..+..|++||+||||||.|+.+.++.+++++. +++...+
T Consensus 150 --------------------------------------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~---i~vmvtt 188 (459)
T KOG0326|consen 150 --------------------------------------KKNVIQAIILVPTRELALQTSQVCKELSKHLG---IKVMVTT 188 (459)
T ss_pred --------------------------------------cccceeEEEEeecchhhHHHHHHHHHHhcccC---eEEEEec
Confidence 13356899999999999999999999999997 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+..+.+-.+...+|++||||||++|+..++.-.+++..++|+||||.|++..|.+.+.+++..||+ ++|++
T Consensus 189 GGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~------~rQil 262 (459)
T KOG0326|consen 189 GGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK------ERQIL 262 (459)
T ss_pred CCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc------cceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCCccC-------------------------ceEEEEEEeCcchHHHHHHH
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE-------------------------TVHHVVVKIDPQQDETWGRL 457 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~-------------------------~i~~~~~~~~~~~~~~~~~l 457 (651)
++|||+|- .|..|..++|++|-.|.+-.+ ..+. .|.|.+++|++.++-.+...
T Consensus 263 lySATFP~-tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAk 340 (459)
T KOG0326|consen 263 LYSATFPL-TVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK 340 (459)
T ss_pred EEecccch-hHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHH
Confidence 99999996 999999999999988876543 2222 34566666666553222211
Q ss_pred ---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce
Q psy8712 458 ---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG 510 (651)
Q Consensus 458 ---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G 510 (651)
+++..+..++|+|.+-||||++.|++|||||+|++.|+|+||+||.||+|.-|
T Consensus 341 KITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 341 KITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred HHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 44556788999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccc
Q psy8712 511 LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDD 590 (651)
Q Consensus 511 ~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~ 590 (651)
.||+|++. +|...|..||+.++.+|..+|+
T Consensus 421 lAInLity--------------------------------------------------edrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 421 LAINLITY--------------------------------------------------EDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred eEEEEEeh--------------------------------------------------hhhhhHHHHHHHhccccccCCC
Confidence 99999987 7899999999999999999986
Q ss_pred ccc
Q psy8712 591 KLE 593 (651)
Q Consensus 591 ~~~ 593 (651)
.+.
T Consensus 451 ~iD 453 (459)
T KOG0326|consen 451 NID 453 (459)
T ss_pred cCC
Confidence 643
No 9
>KOG0340|consensus
Probab=100.00 E-value=2.1e-57 Score=457.04 Aligned_cols=317 Identities=29% Similarity=0.479 Sum_probs=274.0
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|..|+.|||+||+.+.|.+||+..|||||+.+||.||.|+|++-+|.||||||.||.||+|+++.+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse-------------- 71 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE-------------- 71 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc--------------
Confidence 568999999999999999999999999999999999999999999999999999999999998866
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 72 -------------------------------------------------------------------------------- 71 (442)
T KOG0340|consen 72 -------------------------------------------------------------------------------- 71 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 72 -------------------------------------------------------------------------------- 71 (442)
T KOG0340|consen 72 -------------------------------------------------------------------------------- 71 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.+.+..+||++||||||.|+.++|.-+++.+. +++.+
T Consensus 72 ----------------------------------------dP~giFalvlTPTrELA~QiaEQF~alGk~l~---lK~~v 108 (442)
T KOG0340|consen 72 ----------------------------------------DPYGIFALVLTPTRELALQIAEQFIALGKLLN---LKVSV 108 (442)
T ss_pred ----------------------------------------CCCcceEEEecchHHHHHHHHHHHHHhccccc---ceEEE
Confidence 12244799999999999999999999999886 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC----CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCC
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG----HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~----~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~ 396 (651)
++||.+.-.|...|.+.||+||+||||+.+++.++ ...+++++++|+||||++++..|.+++.-+...+|.
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~----- 183 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPK----- 183 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCC-----
Confidence 99999999999999999999999999999998875 235799999999999999999999999999999998
Q ss_pred CceeEEEEeeccChHHHHHHHHHhccC--CeEEEccCCCCccCceEEEEEEeCcchHHHH--------------------
Q psy8712 397 KRLQMIVCSATLHDFDVKKMAERLMYF--PTWVDLKGEDAVPETVHHVVVKIDPQQDETW-------------------- 454 (651)
Q Consensus 397 ~~~Q~l~~SATl~~~~v~~l~~~~l~~--p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------- 454 (651)
.+|.++||||+++ .+..+...-... +-.+.......+++.+.+-++.|+..-++.+
T Consensus 184 -~RQtLlfSATitd-~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFv 261 (442)
T KOG0340|consen 184 -PRQTLLFSATITD-TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFV 261 (442)
T ss_pred -ccceEEEEeehhh-HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEe
Confidence 5899999999996 676665544443 3344555566777777777776654321111
Q ss_pred --------HHH---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhh
Q psy8712 455 --------GRL---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHR 499 (651)
Q Consensus 455 --------~~l---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihR 499 (651)
... ++.....++.+||+++||+|||.|.+|||||+|.++.+|+||
T Consensus 262 nttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 262 NTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred ehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHh
Confidence 000 334456678899999999999999999999999999999999
Q ss_pred cCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHH
Q psy8712 500 IGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEE 579 (651)
Q Consensus 500 iGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~ 579 (651)
+||++|+|+.|.+|+|+++ .|..++..||+
T Consensus 342 vGRtARAGR~G~aiSivt~--------------------------------------------------rDv~l~~aiE~ 371 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQ--------------------------------------------------RDVELLQAIEE 371 (442)
T ss_pred hcchhcccCCcceEEEech--------------------------------------------------hhHHHHHHHHH
Confidence 9999999999999999997 68999999999
Q ss_pred HhcCcccccccc
Q psy8712 580 HLNVTIQQVDDK 591 (651)
Q Consensus 580 ~~~~~i~~~~~~ 591 (651)
.+|.+..+.+..
T Consensus 372 ~igkKl~e~~~~ 383 (442)
T KOG0340|consen 372 EIGKKLTEYNKV 383 (442)
T ss_pred HHhccccccccc
Confidence 999988877644
No 10
>KOG0345|consensus
Probab=100.00 E-value=3.1e-56 Score=462.42 Aligned_cols=225 Identities=29% Similarity=0.507 Sum_probs=195.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCC--CcccCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGG--HLSLTHC 362 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~--~l~l~~l 362 (651)
-+|||+||||||.||.+++..|..++. .+++.+++||.+.......++ +++.|+|||||||.+++.+. .++++++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 589999999999999999999998864 699999999999988887765 58999999999999999874 4556799
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCC--ccCceE
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA--VPETVH 440 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~--~~~~i~ 440 (651)
.+||+||||+++++||..++..|+..||+ ++++-+||||.+. ++.++....++||+.|.+..... +|..+.
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPK------QRRTGLFSATq~~-~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPK------QRRTGLFSATQTQ-EVEDLARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhccc------ccccccccchhhH-HHHHHHHhhccCceeeeecccccccCchhhc
Confidence 99999999999999999999999999999 5788999999997 99999999999999999887775 787888
Q ss_pred EEEEEeCcchHH--------------------------HHHHH----------------------------hhcccccee
Q psy8712 441 HVVVKIDPQQDE--------------------------TWGRL----------------------------RSHIQTDGV 466 (651)
Q Consensus 441 ~~~~~~~~~~~~--------------------------~~~~l----------------------------~~~~~~~~l 466 (651)
..|+.|++..+- .|..+ +.......+
T Consensus 232 ~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 232 LEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred ceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceE
Confidence 777777665421 11111 122334456
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
.+||+++||||||+|++||+||+|.++..|+||+|||||+|+.|.||+|+.+.
T Consensus 312 ~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred EeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc
Confidence 68999999999999999999999999999999999999999999999999983
No 11
>KOG0342|consensus
Probab=100.00 E-value=5e-55 Score=456.64 Aligned_cols=298 Identities=32% Similarity=0.468 Sum_probs=257.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
..|+++.|+|...+|+.+|||...|+||+.+||.+|.|+||+++|.||||||+||+||+++.++....
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~------------ 149 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF------------ 149 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhccc------------
Confidence 36899999999999999999999999999999999999999999999999999999999998877110
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (543)
T KOG0342|consen 150 -------------------------------------------------------------------------------- 149 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (543)
T KOG0342|consen 150 -------------------------------------------------------------------------------- 149 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++..+|||+||||||.|++.+++.+.++.. ++.+..+
T Consensus 150 --------------------------------------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~--~~~v~~v 189 (543)
T KOG0342|consen 150 --------------------------------------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHE--SITVGIV 189 (543)
T ss_pred --------------------------------------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC--CcceEEE
Confidence 012345799999999999999999999998863 4899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.......+.+.+++.|+|+|||||+|++.+. .+.+++++++|+||||+++++||.+++++|++.+|+ ++|
T Consensus 190 iGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk------~rq 263 (543)
T KOG0342|consen 190 IGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK------QRQ 263 (543)
T ss_pred eCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc------cce
Confidence 9999999888999899999999999999999874 445678899999999999999999999999999998 799
Q ss_pred EEEEeeccChHHHHHHHHHhcc-CCeEEEccCC--CCccCceEEEEEEeCcchH--HHHHHH------------------
Q psy8712 401 MIVCSATLHDFDVKKMAERLMY-FPTWVDLKGE--DAVPETVHHVVVKIDPQQD--ETWGRL------------------ 457 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~-~p~~i~~~~~--~~~~~~i~~~~~~~~~~~~--~~~~~l------------------ 457 (651)
.++||||.++ .|+++++-.++ +|..|.+... ..+.+.+.|.++.++.... ..+..+
T Consensus 264 t~LFSAT~~~-kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~ 342 (543)
T KOG0342|consen 264 TLLFSATQPS-KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMS 342 (543)
T ss_pred eeEeeCCCcH-HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhH
Confidence 9999999997 99999988775 5888887654 3566777776666655442 000001
Q ss_pred ---------------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccc
Q psy8712 458 ---------------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504 (651)
Q Consensus 458 ---------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~G 504 (651)
+..-+..++.|||+.+||+|+|+|++||+||+|.++++||||+||||
T Consensus 343 vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 343 VKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTA 422 (543)
T ss_pred HHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcccc
Confidence 22223456778999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeeeC
Q psy8712 505 RAERMGLAISLVST 518 (651)
Q Consensus 505 R~g~~G~ai~lv~~ 518 (651)
|.|+.|.+++|+.+
T Consensus 423 R~gk~G~alL~l~p 436 (543)
T KOG0342|consen 423 REGKEGKALLLLAP 436 (543)
T ss_pred ccCCCceEEEEeCh
Confidence 99999999999998
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-54 Score=477.36 Aligned_cols=323 Identities=32% Similarity=0.467 Sum_probs=275.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++|||+++++++|.++||..|||||++|||.++.|+|++++||||||||+||++|+++.+......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~----------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP----------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc-----------
Confidence 369999999999999999999999999999999999999999999999999999999999988651000
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 77 -------------------------------------------------------------------------------- 76 (423)
T PRK04837 77 -------------------------------------------------------------------------------- 76 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 77 -------------------------------------------------------------------------------- 76 (423)
T PRK04837 77 -------------------------------------------------------------------------------- 76 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......++++|||+||||||.|+++.+..+.+..+ +++..+
T Consensus 77 ------------------------------------~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~---~~v~~~ 117 (423)
T PRK04837 77 ------------------------------------EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLA 117 (423)
T ss_pred ------------------------------------cccccCCceEEEECCcHHHHHHHHHHHHHHhccCC---ceEEEE
Confidence 00012357999999999999999999999988775 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+...+...+.+++||||+||++|.+++.++.+.++++++|||||||+|++++|..++..+++.++.. ...|.
T Consensus 118 ~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----~~~~~ 193 (423)
T PRK04837 118 YGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----NQRLN 193 (423)
T ss_pred ECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----cceeE
Confidence 99999999988899999999999999999999999999999999999999999999999999999998752 14688
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE-------------------------EEEEeCcchH--HHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH-------------------------VVVKIDPQQD--ETW 454 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~-------------------------~~~~~~~~~~--~~~ 454 (651)
++||||++. .+..++...+.+|..+.+.........+.+ .+++|+.... ...
T Consensus 194 ~l~SAT~~~-~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 272 (423)
T PRK04837 194 MLFSATLSY-RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIW 272 (423)
T ss_pred EEEeccCCH-HHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 999999996 899999999999988887766554444444 3444443321 111
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..+ +...+..++++||.++||||+|+|++|||||+|.+.++|+||+||+||+|+.
T Consensus 273 ~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 273 GHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred HHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCC
Confidence 111 3344667788999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 510 GLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 510 G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
|.||+|+++ +|...++.||++++..++..+
T Consensus 353 G~ai~~~~~--------------------------------------------------~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 353 GHSISLACE--------------------------------------------------EYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred eeEEEEeCH--------------------------------------------------HHHHHHHHHHHHhCCCCCCcc
Confidence 999999988 677889999999998876543
No 13
>KOG0348|consensus
Probab=100.00 E-value=2.9e-55 Score=460.24 Aligned_cols=306 Identities=32% Similarity=0.511 Sum_probs=254.0
Q ss_pred cccccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
++|.+|||+|.+++.|+. |++..||.||+++||.||+|+|++|.|+||||||+|||||++|.+...-
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~------------ 203 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAME------------ 203 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcC------------
Confidence 579999999999999966 9999999999999999999999999999999999999999999886510
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
|
T Consensus 204 ------~------------------------------------------------------------------------- 204 (708)
T KOG0348|consen 204 ------P------------------------------------------------------------------------- 204 (708)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
++
T Consensus 205 -----------------------------------------------------------ki------------------- 206 (708)
T KOG0348|consen 205 -----------------------------------------------------------KI------------------- 206 (708)
T ss_pred -----------------------------------------------------------cc-------------------
Confidence 00
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
-...+|.||||+||||||.|+|+.++++.+.+- .|-...
T Consensus 207 ---------------------------------------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h--WIVPg~ 245 (708)
T KOG0348|consen 207 ---------------------------------------QRSDGPYALVIVPTRELALQIYETVQKLLKPFH--WIVPGV 245 (708)
T ss_pred ---------------------------------------cccCCceEEEEechHHHHHHHHHHHHHHhcCce--EEeece
Confidence 024578999999999999999999999987654 466678
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCc----cC-
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI----TS- 394 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~----~~- 394 (651)
+.||...+.....|++|+.|+|+|||||+|++.+ ..+.++++++||+||||+|++.||..+|..|++.+... +.
T Consensus 246 lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~ 325 (708)
T KOG0348|consen 246 LMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKD 325 (708)
T ss_pred eecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhccc
Confidence 8999999999999999999999999999998876 57789999999999999999999999999999887331 11
Q ss_pred --CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC-------------------------CCccCceEEEEEEeC
Q psy8712 395 --DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE-------------------------DAVPETVHHVVVKID 447 (651)
Q Consensus 395 --~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~-------------------------~~~~~~i~~~~~~~~ 447 (651)
-.+..|.+++|||+++ .|.+|+..-++||..|.++.. -..|+.+.|.|+.|+
T Consensus 326 ~~lp~q~q~mLlSATLtd-~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP 404 (708)
T KOG0348|consen 326 PKLPHQLQNMLLSATLTD-GVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP 404 (708)
T ss_pred ccccHHHHhHhhhhhhHH-HHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecC
Confidence 1124799999999997 999999999999999883221 124555666666665
Q ss_pred cchHHHHH------------------------------------------------------------------------
Q psy8712 448 PQQDETWG------------------------------------------------------------------------ 455 (651)
Q Consensus 448 ~~~~~~~~------------------------------------------------------------------------ 455 (651)
+.-+-...
T Consensus 405 pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qe 484 (708)
T KOG0348|consen 405 PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQE 484 (708)
T ss_pred CchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHH
Confidence 54211000
Q ss_pred ------HHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 456 ------RLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 456 ------~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
..+..-...++.|||+++||||+|+|.+||.||.|.+..+|+||+|||+|+|..|.+++|+.+
T Consensus 485 eRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P 553 (708)
T KOG0348|consen 485 ERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLP 553 (708)
T ss_pred HHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecc
Confidence 001112233566899999999999999999999999999999999999999999999999999
No 14
>KOG0343|consensus
Probab=100.00 E-value=1.4e-54 Score=456.19 Aligned_cols=296 Identities=31% Similarity=0.536 Sum_probs=259.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
-|++|+|+....++|++.+|..||.||+.+||..|.|+|||.+|.||||||+||++|+|+.++..
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--------------- 134 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--------------- 134 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc---------------
Confidence 59999999999999999999999999999999999999999999999999999999999998871
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
.|.+
T Consensus 135 ---------------------------------kWs~------------------------------------------- 138 (758)
T KOG0343|consen 135 ---------------------------------KWSP------------------------------------------- 138 (758)
T ss_pred ---------------------------------CCCC-------------------------------------------
Confidence 1211
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 139 -------------------------------------------------------------------------------- 138 (758)
T KOG0343|consen 139 -------------------------------------------------------------------------------- 138 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
..+.-||||+||||||.|+++++.+.+++-. ++..+++
T Consensus 139 ---------------------------------------~DGlGalIISPTRELA~QtFevL~kvgk~h~---fSaGLii 176 (758)
T KOG0343|consen 139 ---------------------------------------TDGLGALIISPTRELALQTFEVLNKVGKHHD---FSAGLII 176 (758)
T ss_pred ---------------------------------------CCCceeEEecchHHHHHHHHHHHHHHhhccc---cccceee
Confidence 1123489999999999999999999999876 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
||.+.+.....+. +..|+|||||||++++... .++.+++.+||+||||+|+++||...+..|+..+|+ .+|+
T Consensus 177 GG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~------~RQT 249 (758)
T KOG0343|consen 177 GGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPK------KRQT 249 (758)
T ss_pred cCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCCh------hhee
Confidence 9999887776664 5899999999999999764 678899999999999999999999999999999999 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccC--CCCccCceEEEEEEeCcchH--HHH-----------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKG--EDAVPETVHHVVVKIDPQQD--ETW----------------------- 454 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~--~~~~~~~i~~~~~~~~~~~~--~~~----------------------- 454 (651)
++||||-+. .|.++++..+++|..|.+.. ...+|+++.|.|+.|+...+ -+|
T Consensus 250 LLFSATqt~-svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 250 LLFSATQTK-SVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKF 328 (758)
T ss_pred eeeecccch-hHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHH
Confidence 999999996 99999999999999988873 35789999998888876542 122
Q ss_pred -----HHHhhcc------------------------ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 455 -----GRLRSHI------------------------QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 455 -----~~l~~~~------------------------~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
.+++.++ ...++.|||..+||+|+|.|++||++|+|.++++||||+||++|
T Consensus 329 ~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR 408 (758)
T KOG0343|consen 329 LYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR 408 (758)
T ss_pred HHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc
Confidence 2222222 23446689999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeCC
Q psy8712 506 AERMGLAISLVSTV 519 (651)
Q Consensus 506 ~g~~G~ai~lv~~~ 519 (651)
.+..|.+++++++.
T Consensus 409 ~~~~G~sll~L~ps 422 (758)
T KOG0343|consen 409 YKERGESLLMLTPS 422 (758)
T ss_pred ccCCCceEEEEcch
Confidence 99999999999983
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-53 Score=471.13 Aligned_cols=318 Identities=36% Similarity=0.593 Sum_probs=273.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|++|||+++|+++|.++||..|||+|++|||.++.|+|++++||||||||+||++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~------------ 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH------------ 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc------------
Confidence 69999999999999999999999999999999999999999999999999999999999977540000
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 70 -------------------------------------------------------------------------------- 69 (456)
T PRK10590 70 -------------------------------------------------------------------------------- 69 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 70 -------------------------------------------------------------------------------- 69 (456)
T PRK10590 70 -------------------------------------------------------------------------------- 69 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
......+++|||+||+|||.|+.+.++.+.++++ +++..++
T Consensus 70 ------------------------------------~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~---~~~~~~~ 110 (456)
T PRK10590 70 ------------------------------------AKGRRPVRALILTPTRELAAQIGENVRDYSKYLN---IRSLVVF 110 (456)
T ss_pred ------------------------------------cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC---CEEEEEE
Confidence 0001235899999999999999999999988776 8999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+...+...+..+++|+|+||++|++++....+.++++++|||||||+|++++|..++..++..++. ..|++
T Consensus 111 gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~------~~q~l 184 (456)
T PRK10590 111 GGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA------KRQNL 184 (456)
T ss_pred CCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc------cCeEE
Confidence 999999998888899999999999999999998899999999999999999999999999999999987 68999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE-------------------------EEeCcchH--HHHH
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV-------------------------VKIDPQQD--ETWG 455 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~-------------------------~~~~~~~~--~~~~ 455 (651)
+||||+++ .+..++..++.+|..+.+.........+.+.+ ++|++... ....
T Consensus 185 ~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 185 LFSATFSD-DIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred EEeCCCcH-HHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHH
Confidence 99999997 89999999999998887766555555555444 44443321 1111
Q ss_pred HH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce
Q psy8712 456 RL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG 510 (651)
Q Consensus 456 ~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G 510 (651)
.+ ++..+..++++|+.+.+|||+|+|++|||||+|.+.++|+||+|||||+|+.|
T Consensus 264 ~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 264 QLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCe
Confidence 11 33345677889999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 511 LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 511 ~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|++|+.. +|...++.||+.++.+++..
T Consensus 344 ~ai~l~~~--------------------------------------------------~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 344 EALSLVCV--------------------------------------------------DEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred eEEEEecH--------------------------------------------------HHHHHHHHHHHHhcCCCccc
Confidence 99999987 68889999999999887544
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-53 Score=480.63 Aligned_cols=298 Identities=31% Similarity=0.482 Sum_probs=253.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++++++.|+++|.++||..|||||++|||.++.|+|++++||||||||+||+||++..+.....
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~------------ 197 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL------------ 197 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------------
Confidence 57999999999999999999999999999999999999999999999999999999999987654100
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 198 -------------------------------------------------------------------------------- 197 (545)
T PTZ00110 198 -------------------------------------------------------------------------------- 197 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 198 -------------------------------------------------------------------------------- 197 (545)
T PTZ00110 198 -------------------------------------------------------------------------------- 197 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.....+|++|||+||||||.|+.+.++.|+.... +++.++
T Consensus 198 -------------------------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~---i~~~~~ 237 (545)
T PTZ00110 198 -------------------------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK---IRNTVA 237 (545)
T ss_pred -------------------------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC---ccEEEE
Confidence 0012367899999999999999999999987765 899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+...+...+.++++|||+||++|.+++.++...++++++|||||||+|++++|.+++..|+..++. .+|+
T Consensus 238 ~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~------~~q~ 311 (545)
T PTZ00110 238 YGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP------DRQT 311 (545)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC------CCeE
Confidence 9999999999999999999999999999999999889999999999999999999999999999999876 6899
Q ss_pred EEEeeccChHHHHHHHHHhcc-CCeEEEccCCC-CccCceEE---------------------------EEEEeCcchHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMY-FPTWVDLKGED-AVPETVHH---------------------------VVVKIDPQQDE 452 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~-~p~~i~~~~~~-~~~~~i~~---------------------------~~~~~~~~~~~ 452 (651)
++||||++. ++..+++.++. +|..+.+.... ....++.+ .+++|++.+..
T Consensus 312 l~~SAT~p~-~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 312 LMWSATWPK-EVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEeCCCH-HHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999997 89999998886 57766654332 12233333 44455443311
Q ss_pred --HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 453 --TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 453 --~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
....+ ++..+..+|++|+.++||||+|+|++|||||+|.+.++|+||+|||||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 11111 223355678899999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeC
Q psy8712 506 AERMGLAISLVST 518 (651)
Q Consensus 506 ~g~~G~ai~lv~~ 518 (651)
+|+.|.|++|+++
T Consensus 471 ~G~~G~ai~~~~~ 483 (545)
T PTZ00110 471 AGAKGASYTFLTP 483 (545)
T ss_pred CCCCceEEEEECc
Confidence 9999999999998
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.6e-53 Score=483.34 Aligned_cols=315 Identities=34% Similarity=0.552 Sum_probs=275.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|+|+++|+++|.++||..|||+|+++||.++.|+||+++||||||||+||++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~--------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP--------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------------
Confidence 57999999999999999999999999999999999999999999999999999999999986643
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 71 -------------------------------------------------------------------------------- 70 (629)
T PRK11634 71 -------------------------------------------------------------------------------- 70 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 71 -------------------------------------------------------------------------------- 70 (629)
T PRK11634 71 -------------------------------------------------------------------------------- 70 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
....|++|||+||+|||.|+++.++.+.+++. ++++..+
T Consensus 71 ---------------------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~--~i~v~~~ 109 (629)
T PRK11634 71 ---------------------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMR--GVNVVAL 109 (629)
T ss_pred ---------------------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC--CceEEEE
Confidence 01246899999999999999999999987764 5899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+...+...+..+++|||+||+++.+++.++.+.++++++|||||||+|++++|..++..++..+|. ..|+
T Consensus 110 ~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~------~~q~ 183 (629)
T PRK11634 110 YGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE------GHQT 183 (629)
T ss_pred ECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC------CCeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEE-------------------------EeCcchH--HHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV-------------------------KIDPQQD--ETW 454 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~-------------------------~~~~~~~--~~~ 454 (651)
++||||+|+ .+..+++.++.+|..+.+.........+.+.++ +|++... .+.
T Consensus 184 llfSAT~p~-~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 184 ALFSATMPE-AIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EEEEccCCh-hHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHH
Confidence 999999997 899999999999988887766655555555443 4433321 111
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..| +...+.+++++||.+.+|||+|+|++|||||+|.+.++|+||+|||||+|+.
T Consensus 263 ~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 263 EALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 111 2334667888999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 510 GLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 510 G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
|.|++|+.+ .|...++.||+.++..++.++
T Consensus 343 G~ai~~v~~--------------------------------------------------~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 343 GRALLFVEN--------------------------------------------------RERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred ceEEEEech--------------------------------------------------HHHHHHHHHHHHhCCCcceec
Confidence 999999987 577888999999998887664
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.1e-53 Score=470.59 Aligned_cols=294 Identities=35% Similarity=0.531 Sum_probs=257.1
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|++|++|+|+|++.++|.++||..|||+|++|||.++.|+|++++||||||||+||++|+++.+..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------------- 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------------- 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh--------------
Confidence 678999999999999999999999999999999999999999999999999999999999986633
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (460)
T PRK11776 69 -------------------------------------------------------------------------------- 68 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (460)
T PRK11776 69 -------------------------------------------------------------------------------- 68 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
....+++|||+||+|||.|+.+.++.+..... ++++..
T Consensus 69 ----------------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~v~~ 106 (460)
T PRK11776 69 ----------------------------------------KRFRVQALVLCPTRELADQVAKEIRRLARFIP--NIKVLT 106 (460)
T ss_pred ----------------------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC--CcEEEE
Confidence 01134799999999999999999999987653 489999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.+...+...+..+++|+|+||+++.+++.++.+.++++++|||||||+|++++|..++..++..+|. ..|
T Consensus 107 ~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~------~~q 180 (460)
T PRK11776 107 LCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA------RRQ 180 (460)
T ss_pred EECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc------ccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcch-------------------------H--H-
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ-------------------------D--E- 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~-------------------------~--~- 452 (651)
+++||||+++ .+..++..++.+|..+.+..... ...+.+.++.++... . .
T Consensus 181 ~ll~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 181 TLLFSATYPE-GIAAISQRFQRDPVEVKVESTHD-LPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEV 258 (460)
T ss_pred EEEEEecCcH-HHHHHHHHhcCCCEEEEECcCCC-CCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHH
Confidence 9999999997 99999999999998888765443 334555555444322 1 0
Q ss_pred ------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 453 ------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 453 ------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.....++.....++++|+.+++|||+|++++|||||+|.+.++|+||+|||||+|+
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC
Confidence 11111334456778899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
.|.|++|+.+
T Consensus 339 ~G~ai~l~~~ 348 (460)
T PRK11776 339 KGLALSLVAP 348 (460)
T ss_pred cceEEEEEch
Confidence 9999999988
No 19
>KOG0346|consensus
Probab=100.00 E-value=1.7e-53 Score=438.41 Aligned_cols=300 Identities=31% Similarity=0.494 Sum_probs=254.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|++|||++-|++|+.++||..||-||+.|||++|.|+||++.|.||||||+||++|+||.++.....
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t------------ 87 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT------------ 87 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhc------------
Confidence 69999999999999999999999999999999999999999999999999999999999999872110
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 88 -------------------------------------------------------------------------------- 87 (569)
T KOG0346|consen 88 -------------------------------------------------------------------------------- 87 (569)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 88 -------------------------------------------------------------------------------- 87 (569)
T KOG0346|consen 88 -------------------------------------------------------------------------------- 87 (569)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.....+|.++||+||||||+|+++++.++..+.+ ..+++.-+.
T Consensus 88 ------------------------------------~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~-k~lr~~nl~ 130 (569)
T KOG0346|consen 88 ------------------------------------NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS-KDLRAINLA 130 (569)
T ss_pred ------------------------------------ccccccceeEEEechHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh
Confidence 0013467899999999999999999999987653 136666666
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCC-cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~-l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
...+.......|...|||||+||++++.++..+. ..++.+.+||+||||.++..||.++++.+...||. ..|.
T Consensus 131 s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr------~~Q~ 204 (569)
T KOG0346|consen 131 SSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR------IYQC 204 (569)
T ss_pred cccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc------hhhh
Confidence 6666666668888999999999999999999887 57899999999999999999999999999999998 7999
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCC-ccCceEEEEEEeCcchHHHHHH------------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA-VPETVHHVVVKIDPQQDETWGR------------------------ 456 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~------------------------ 456 (651)
+++|||+++ +|..+-+.++++|..+.+...+. .++.+.|+.+.|.+.++-....
T Consensus 205 ~LmSATl~d-Dv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 205 FLMSATLSD-DVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYR 283 (569)
T ss_pred eeehhhhhh-HHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHH
Confidence 999999997 99999999999999988876654 4678999988888554211110
Q ss_pred --H---------------------------hhccccceeecccc-----------------------------------c
Q psy8712 457 --L---------------------------RSHIQTDGVHARDN-----------------------------------A 472 (651)
Q Consensus 457 --l---------------------------~~~~~~~~l~~td~-----------------------------------~ 472 (651)
+ ++....+.+.+||. .
T Consensus 284 LkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GV 363 (569)
T KOG0346|consen 284 LKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGV 363 (569)
T ss_pred HHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhch
Confidence 0 12222334444441 2
Q ss_pred cCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 473 RPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 473 ~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+||||+.+|+.|||||+|.+..+||||+|||+|++++|.+++|+.+
T Consensus 364 sRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 364 SRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred hccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecc
Confidence 3499999999999999999999999999999999999999999999
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.5e-53 Score=474.44 Aligned_cols=299 Identities=27% Similarity=0.467 Sum_probs=255.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++|+++.|+++|.++||..|||+|.+|||.++.|+|++++||||||||+||++|+++.+......
T Consensus 121 ~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~----------- 189 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG----------- 189 (518)
T ss_pred cCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc-----------
Confidence 579999999999999999999999999999999999999999999999999999999999877641000
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 190 -------------------------------------------------------------------------------- 189 (518)
T PLN00206 190 -------------------------------------------------------------------------------- 189 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 190 -------------------------------------------------------------------------------- 189 (518)
T PLN00206 190 -------------------------------------------------------------------------------- 189 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......+|++|||+||||||.|+++.++.+.+.++ +++.++
T Consensus 190 ------------------------------------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~---~~~~~~ 230 (518)
T PLN00206 190 ------------------------------------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP---FKTALV 230 (518)
T ss_pred ------------------------------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC---ceEEEE
Confidence 00012357899999999999999999999988765 899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.....+...+..+++|+|+||++|.+++.++.+.++++++|||||||+|++++|.+++..++..++. .|+
T Consensus 231 ~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~-------~q~ 303 (518)
T PLN00206 231 VGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQ-------PQV 303 (518)
T ss_pred ECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCC-------CcE
Confidence 9999999998889999999999999999999999899999999999999999999999999999998864 799
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC---------------------------cchHH--
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID---------------------------PQQDE-- 452 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~---------------------------~~~~~-- 452 (651)
++||||+++ .+..++..++.++..+.+.........+++.+..++ +....
T Consensus 304 l~~SATl~~-~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~ 382 (518)
T PLN00206 304 LLFSATVSP-EVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADL 382 (518)
T ss_pred EEEEeeCCH-HHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHH
Confidence 999999997 899999999999988887665554455555444443 32211
Q ss_pred HHHHH--------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC
Q psy8712 453 TWGRL--------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA 506 (651)
Q Consensus 453 ~~~~l--------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~ 506 (651)
....+ ++..+..++++|+.++||||+|+|++|||||+|.+.++|+||+|||||+
T Consensus 383 l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~ 462 (518)
T PLN00206 383 LANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRM 462 (518)
T ss_pred HHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccC
Confidence 00111 2233456788899999999999999999999999999999999999999
Q ss_pred CCceEEEEeeeC
Q psy8712 507 ERMGLAISLVST 518 (651)
Q Consensus 507 g~~G~ai~lv~~ 518 (651)
|+.|.|++|+++
T Consensus 463 g~~G~ai~f~~~ 474 (518)
T PLN00206 463 GEKGTAIVFVNE 474 (518)
T ss_pred CCCeEEEEEEch
Confidence 999999999987
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-52 Score=472.54 Aligned_cols=302 Identities=30% Similarity=0.446 Sum_probs=255.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|+|+|+|+++|.++||..|||||+++||.++.|+||++.||||||||+||++|+++.+..... .
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~-------~---- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPA-------L---- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------c----
Confidence 46999999999999999999999999999999999999999999999999999999999998765100 0
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 78 -------------------------------------------------------------------------------- 77 (572)
T PRK04537 78 -------------------------------------------------------------------------------- 77 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 78 -------------------------------------------------------------------------------- 77 (572)
T PRK04537 78 -------------------------------------------------------------------------------- 77 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.......+++|||+||+|||.|+++.++.++..++ +++..+
T Consensus 78 ------------------------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~---i~v~~l 118 (572)
T PRK04537 78 ------------------------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALV 118 (572)
T ss_pred ------------------------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC---ceEEEE
Confidence 00012246899999999999999999999988765 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.+...+...+.+++||||+||++|++++.+. .+.++.+++|||||||+|++++|..++..+++.++.. ...|
T Consensus 119 ~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----~~~q 194 (572)
T PRK04537 119 YGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----GTRQ 194 (572)
T ss_pred ECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----cCce
Confidence 9999999998889889999999999999998765 5778999999999999999999999999999998862 1479
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEE-------------------------EeCcchH--HH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV-------------------------KIDPQQD--ET 453 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~-------------------------~~~~~~~--~~ 453 (651)
+++||||++. .+..++..++.+|..+.+.........+.|.++ ||++... ..
T Consensus 195 ~ll~SATl~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l 273 (572)
T PRK04537 195 TLLFSATLSH-RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERV 273 (572)
T ss_pred EEEEeCCccH-HHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHH
Confidence 9999999997 899999999998877766655544455555443 3433221 11
Q ss_pred -------------------------HHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 454 -------------------------WGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 454 -------------------------~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
....++..+..+|++||.+++|||+|+|++|||||+|.+.++|+||+||+||+|+
T Consensus 274 ~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 274 ARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred HHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCC
Confidence 1111334456788899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
.|.||+|+++
T Consensus 354 ~G~ai~~~~~ 363 (572)
T PRK04537 354 EGDAISFACE 363 (572)
T ss_pred CceEEEEecH
Confidence 9999999987
No 22
>KOG0347|consensus
Probab=100.00 E-value=2e-53 Score=447.52 Aligned_cols=317 Identities=29% Similarity=0.433 Sum_probs=254.3
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC-CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
||||..|+|+++++++|..+||..||+||+.+||.+..| .||+-+|+||||||+||.+|++..+.++.....
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~------- 252 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ------- 252 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh-------
Confidence 689999999999999999999999999999999999998 899999999999999999999997776211000
Q ss_pred CccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCC
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGT 159 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~ 159 (651)
|-
T Consensus 253 -----------------------------e~------------------------------------------------- 254 (731)
T KOG0347|consen 253 -----------------------------EL------------------------------------------------- 254 (731)
T ss_pred -----------------------------hh-------------------------------------------------
Confidence 00
Q ss_pred CCCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccc
Q psy8712 160 DRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSF 239 (651)
Q Consensus 160 ~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~ 239 (651)
.|
T Consensus 255 -------------------------------------------------------------------------~~----- 256 (731)
T KOG0347|consen 255 -------------------------------------------------------------------------SN----- 256 (731)
T ss_pred -------------------------------------------------------------------------hh-----
Confidence 00
Q ss_pred ccCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEE
Q psy8712 240 NFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIREL 319 (651)
Q Consensus 240 ~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~ 319 (651)
.......|.+||++||||||.|+.+.+..+..+.+ +++.
T Consensus 257 --------------------------------------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~---i~v~ 295 (731)
T KOG0347|consen 257 --------------------------------------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ---IRVA 295 (731)
T ss_pred --------------------------------------HHhccCcceeEEecChHHHHHHHHHHHHHhccccC---eEEE
Confidence 00012234599999999999999999999988765 9999
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc---ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL---SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l---~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~ 396 (651)
.++||.....|.+.|...|||||+|||||+.++..+.. .++++++||+||||+|++.|+...+..|++.|.. .+..
T Consensus 296 si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e-~~~~ 374 (731)
T KOG0347|consen 296 SITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE-EQKN 374 (731)
T ss_pred EeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh-hhcc
Confidence 99999999999999999999999999999999987654 5789999999999999999999999999999873 3445
Q ss_pred CceeEEEEeeccCh--------------------HHHHHHHHH--hccCCeEEEccCCCCccCce--------------E
Q psy8712 397 KRLQMIVCSATLHD--------------------FDVKKMAER--LMYFPTWVDLKGEDAVPETV--------------H 440 (651)
Q Consensus 397 ~~~Q~l~~SATl~~--------------------~~v~~l~~~--~l~~p~~i~~~~~~~~~~~i--------------~ 440 (651)
..+|++.||||++- ..+..+.+. +...|..|++.+...+...+ .
T Consensus 375 ~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~y 454 (731)
T KOG0347|consen 375 RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLY 454 (731)
T ss_pred cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCcccccee
Confidence 57899999999853 112222322 22467888877766443322 1
Q ss_pred E----------EEEEeCcchH-------------------------HHHHHH--hhccccceeeccccccCCCCCCCCCE
Q psy8712 441 H----------VVVKIDPQQD-------------------------ETWGRL--RSHIQTDGVHARDNARPGIDISGLPF 483 (651)
Q Consensus 441 ~----------~~~~~~~~~~-------------------------~~~~~l--~~~~~~~~l~~td~~~rGIDip~v~~ 483 (651)
. .++||++-+. ..+..| +......++.|||+++||||||+|.|
T Consensus 455 lyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~H 534 (731)
T KOG0347|consen 455 LYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQH 534 (731)
T ss_pred EEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcce
Confidence 1 2355555431 111111 45566778999999999999999999
Q ss_pred EEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 484 IINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 484 VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
||||.+|.+.+-|+||.|||+|++..|..+.|+.+.+-.
T Consensus 535 VIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 535 VIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred EEEeecCCccceeEecccccccccCCCeEEEEeChHHhH
Confidence 999999999999999999999999999999999996533
No 23
>KOG0335|consensus
Probab=100.00 E-value=2.9e-53 Score=450.78 Aligned_cols=229 Identities=30% Similarity=0.533 Sum_probs=200.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
+|++|||+||||||.|+++..+++..... +++...+||.+...+.+.+.+++||+|+|||||.+++..+.+.+++++
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~---~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSG---MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhccccc---ceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 68999999999999999999999987665 999999999999999999999999999999999999999999999999
Q ss_pred eEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-CeEEEccCCCCccCceEE
Q psy8712 364 FFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-PTWVDLKGEDAVPETVHH 441 (651)
Q Consensus 364 ~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-p~~i~~~~~~~~~~~i~~ 441 (651)
+|||||||+|+| ++|.++|++|+..+.... ..++|.++||||+|. ++..++..++.+ ...+.+.......+++.|
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~--~~~~qt~mFSAtfp~-~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q 305 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPP--KNNRQTLLFSATFPK-EIQRLAADFLKDNYIFLAVGRVGSTSENITQ 305 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCC--ccceeEEEEeccCCh-hhhhhHHHHhhccceEEEEeeecccccccee
Confidence 999999999999 999999999999876532 237999999999997 898899988886 777777777777778877
Q ss_pred EEEEeCcch-------------------------------------------------------------HHHHHHHhhc
Q psy8712 442 VVVKIDPQQ-------------------------------------------------------------DETWGRLRSH 460 (651)
Q Consensus 442 ~~~~~~~~~-------------------------------------------------------------~~~~~~l~~~ 460 (651)
.+.+|+... .......++.
T Consensus 306 ~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 306 KILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred EeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 777776321 1111122455
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
....++++|++++||||||+|+||||||+|.+..+|+||||||||+|..|.+++|+..
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc
Confidence 5667788999999999999999999999999999999999999999999999999985
No 24
>KOG0336|consensus
Probab=100.00 E-value=3.6e-53 Score=431.70 Aligned_cols=227 Identities=29% Similarity=0.471 Sum_probs=194.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.++|.+|+++||||||.|+.-.+.++... +.+..|++||-+..+|.+.|+++++|+|+||++|.++...+.+++..
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyn----g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~s 367 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYN----GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLAS 367 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhc----CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeee
Confidence 45788999999999999999999887643 48899999999999999999999999999999999999999999999
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCc-cCceE
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAV-PETVH 440 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~-~~~i~ 440 (651)
+.+|||||||+|||+||.+++++|+-.+.. ++|+++.|||+|+ .|+.|+..++++|..+.+..-+.. ...++
T Consensus 368 iTYlVlDEADrMLDMgFEpqIrkilldiRP------DRqtvmTSATWP~-~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 368 ITYLVLDEADRMLDMGFEPQIRKILLDIRP------DRQTVMTSATWPE-GVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred eEEEEecchhhhhcccccHHHHHHhhhcCC------cceeeeecccCch-HHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 999999999999999999999999888776 6999999999997 999999999999988877665533 23455
Q ss_pred EEEEEeCcch------------------------------------------------------HHHHHHHhhcccccee
Q psy8712 441 HVVVKIDPQQ------------------------------------------------------DETWGRLRSHIQTDGV 466 (651)
Q Consensus 441 ~~~~~~~~~~------------------------------------------------------~~~~~~l~~~~~~~~l 466 (651)
|.+ .+..+. ++.....++...+.++
T Consensus 441 Q~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrIL 519 (629)
T KOG0336|consen 441 QNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRIL 519 (629)
T ss_pred eeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEE
Confidence 544 222221 1111111344456778
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
++||.++||||+++|+||+|||+|.+++.|+||+||+||+|+.|.+++|++..|
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D 573 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRND 573 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhh
Confidence 899999999999999999999999999999999999999999999999999754
No 25
>KOG0341|consensus
Probab=100.00 E-value=1.8e-54 Score=438.63 Aligned_cols=305 Identities=32% Similarity=0.522 Sum_probs=264.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
-+|.+|-++..|++.|.+-|+..|||||-+-||.+|.|+|.+-.|-||||||+.|.||++-..++.-..
T Consensus 170 ksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~----------- 238 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM----------- 238 (610)
T ss_pred hhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc-----------
Confidence 379999999999999999999999999999999999999999999999999999999999988772110
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 239 -------------------------------------------------------------------------------- 238 (610)
T KOG0341|consen 239 -------------------------------------------------------------------------------- 238 (610)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
-||
T Consensus 239 ---------------------lPf-------------------------------------------------------- 241 (610)
T KOG0341|consen 239 ---------------------LPF-------------------------------------------------------- 241 (610)
T ss_pred ---------------------Ccc--------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCC---CCCeeE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFIT---DPKIRE 318 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~---~~~i~v 318 (651)
....+|..|||||+||||.|+++.+..+...+. .|.++.
T Consensus 242 --------------------------------------~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 242 --------------------------------------ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred --------------------------------------ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 124588999999999999999999998876553 467999
Q ss_pred EEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 319 LLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 319 ~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.+++||.+..+|...+++++||+|+|||||.|++.++.++++-+++|++||||+|+|+||.++++.|+..+.. .
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~------Q 357 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG------Q 357 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE------------------------EEEEEeCcch----
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH------------------------HVVVKIDPQQ---- 450 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~------------------------~~~~~~~~~~---- 450 (651)
+|+++||||+|. .+..|++.-+..|+.|.+.+.....-++. .++++++.+.
T Consensus 358 RQTLLFSATMP~-KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~ 436 (610)
T KOG0341|consen 358 RQTLLFSATMPK-KIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDD 436 (610)
T ss_pred hheeeeeccccH-HHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHH
Confidence 899999999997 99999999999999998876543222211 1344444332
Q ss_pred -----------------------HHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 451 -----------------------DETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 451 -----------------------~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+......++..+.+++++||++++|+|+|++.||||||+|.++++|+||||||||.|
T Consensus 437 IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg 516 (610)
T KOG0341|consen 437 IHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG 516 (610)
T ss_pred HHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC
Confidence 112222356667788999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeeCC
Q psy8712 508 RMGLAISLVSTV 519 (651)
Q Consensus 508 ~~G~ai~lv~~~ 519 (651)
+.|.|.+|+...
T Consensus 517 ~~GiATTfINK~ 528 (610)
T KOG0341|consen 517 KTGIATTFINKN 528 (610)
T ss_pred Ccceeeeeeccc
Confidence 999999999874
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-51 Score=453.77 Aligned_cols=297 Identities=35% Similarity=0.509 Sum_probs=257.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
.|++|+++|+++++|.++||..||++|++|||.++.|+|++++||||||||+||++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------- 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------- 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------------
Confidence 6999999999999999999999999999999999999999999999999999999999997764000
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (434)
T PRK11192 69 -------------------------------------------------------------------------------- 68 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (434)
T PRK11192 69 -------------------------------------------------------------------------------- 68 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.....+++|||+||+|||.|+++.+..+....+ +++..++
T Consensus 69 -------------------------------------~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~---~~v~~~~ 108 (434)
T PRK11192 69 -------------------------------------RKSGPPRILILTPTRELAMQVADQARELAKHTH---LDIATIT 108 (434)
T ss_pred -------------------------------------cCCCCceEEEECCcHHHHHHHHHHHHHHHccCC---cEEEEEE
Confidence 001235899999999999999999999998776 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.....+...+.++++|||+||++|++++.++.+.++++++|||||||+|++++|...+..+...++. ..|++
T Consensus 109 gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~------~~q~~ 182 (434)
T PRK11192 109 GGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW------RKQTL 182 (434)
T ss_pred CCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc------ccEEE
Confidence 999999998888889999999999999999999999999999999999999999999999999988876 68999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC--------------------------cchH--HHH
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID--------------------------PQQD--ETW 454 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~--------------------------~~~~--~~~ 454 (651)
+||||++...+..+...++.+|..+.+.........+.+.+..++ +... ...
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~ 262 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELA 262 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHH
Confidence 999999865789999999999988887766655555665554443 2221 111
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..+ ++.....++++||.+.+|||+|+|++|||||+|.+.+.|+||+|||||+|+.
T Consensus 263 ~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~ 342 (434)
T PRK11192 263 GWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRK 342 (434)
T ss_pred HHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCC
Confidence 111 2334567788999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeC
Q psy8712 510 GLAISLVST 518 (651)
Q Consensus 510 G~ai~lv~~ 518 (651)
|.|++|+..
T Consensus 343 g~ai~l~~~ 351 (434)
T PRK11192 343 GTAISLVEA 351 (434)
T ss_pred ceEEEEecH
Confidence 999999987
No 27
>KOG0337|consensus
Probab=100.00 E-value=3e-51 Score=420.17 Aligned_cols=371 Identities=29% Similarity=0.419 Sum_probs=321.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|..|||+..+.+++.+-||..|||||++.||+||.|+||+..|-||||||+||++|+++.+...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~-------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH-------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc--------------
Confidence 479999999999999999999999999999999999999999999999999999999999977541
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 87 -------------------------------------------------------------------------------- 86 (529)
T KOG0337|consen 87 -------------------------------------------------------------------------------- 86 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 87 -------------------------------------------------------------------------------- 86 (529)
T KOG0337|consen 87 -------------------------------------------------------------------------------- 86 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...+.+++|++||||||.|+.++++.+++... ++..++
T Consensus 87 ---------------------------------------s~~g~RalilsptreLa~qtlkvvkdlgrgt~---lr~s~~ 124 (529)
T KOG0337|consen 87 ---------------------------------------SQTGLRALILSPTRELALQTLKVVKDLGRGTK---LRQSLL 124 (529)
T ss_pred ---------------------------------------cccccceeeccCcHHHHHHHHHHHHHhccccc---hhhhhh
Confidence 01244899999999999999999999999886 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||...++|...|.+++|||++||++++++...-.+.|+.+.++|+||||+|+++||.+++.+++.++|. .+|+
T Consensus 125 ~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~------~~QT 198 (529)
T KOG0337|consen 125 VGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPE------SRQT 198 (529)
T ss_pred cccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCC------cceE
Confidence 9999999999999999999999999999988888899999999999999999999999999999999998 6799
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHH------------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL------------------------ 457 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l------------------------ 457 (651)
++||||+|. .+-++++.-+.+|..+.++-+..+.+.++..+..+.+.++.....-
T Consensus 199 llfSatlp~-~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~ 277 (529)
T KOG0337|consen 199 LLFSATLPR-DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYV 277 (529)
T ss_pred EEEeccCch-hhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHH
Confidence 999999997 8999999999999999999888888888887777766553322211
Q ss_pred -----------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 458 -----------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 458 -----------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
+..-+...++.||..+||+|||-++.|||||+|.+..-|+||+||+.|+|+
T Consensus 278 ~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 278 RGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred HHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 122344556678999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|.+|+||.+ +|...+-+|+.+++.++.-.
T Consensus 358 tg~aYs~V~~--------------------------------------------------~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 358 TGRAYSLVAS--------------------------------------------------TDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred cceEEEEEec--------------------------------------------------ccchhhhhhhhhcCCceeec
Confidence 9999999998 56667778888899876655
Q ss_pred cccccCCcccCCCceeecceecccCccchhhHhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8712 589 DDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQMEPSVNKLSKLESKAQLIYLKHHQAK 648 (651)
Q Consensus 589 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~el~~le~~~~~~~~~~~~~~ 648 (651)
....+... +...+.|..++...+...+.+..+.+.-.+|..+++.+.+++..|..++
T Consensus 388 ~~~~e~d~---~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr 444 (529)
T KOG0337|consen 388 ISHFEYDC---DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTR 444 (529)
T ss_pred cchhhhcc---ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Confidence 54433333 2225678887777777777777888888999999999998888777664
No 28
>KOG0327|consensus
Probab=100.00 E-value=9.5e-51 Score=414.88 Aligned_cols=316 Identities=30% Similarity=0.523 Sum_probs=280.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|++|+|.++|++.+...||..|+.||+.||+++..|.|+.+.|.+|+|||.||+++++|.+.-
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---------------- 90 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---------------- 90 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc----------------
Confidence 7999999999999999999999999999999999999999999999999999999999996522
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 91 -------------------------------------------------------------------------------- 90 (397)
T KOG0327|consen 91 -------------------------------------------------------------------------------- 90 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 91 -------------------------------------------------------------------------------- 90 (397)
T KOG0327|consen 91 -------------------------------------------------------------------------------- 90 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.....+||+++||||||.|+.++...++.+.+ +++..+.
T Consensus 91 --------------------------------------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~---~~v~~~i 129 (397)
T KOG0327|consen 91 --------------------------------------SVKETQALILAPTRELAQQIQKVVRALGDHMD---VSVHACI 129 (397)
T ss_pred --------------------------------------chHHHHHHHhcchHHHHHHHHHHHHhhhcccc---eeeeeec
Confidence 01234899999999999999999999999886 9999999
Q ss_pred CCccHHHHHHHh-ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 323 GGVNVKDQMSVL-SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 323 Gg~~~~~q~~~L-~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
||.....+...+ ...++|+|||||++.+++..+.+..+.++++|+||||.|+..||.+++..|++.+|. +.|+
T Consensus 130 gg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~------~vQv 203 (397)
T KOG0327|consen 130 GGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS------DVQV 203 (397)
T ss_pred CcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCc------chhh
Confidence 999887555544 456999999999999999999999999999999999999999999999999999998 7899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchH------------------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD------------------------------ 451 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~------------------------------ 451 (651)
+++|||+|+ ++..+.++++++|++|.++..+.+.+.++|+++.+..+.+
T Consensus 204 ~l~SAT~p~-~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~ 282 (397)
T KOG0327|consen 204 VLLSATMPS-DVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDK 282 (397)
T ss_pred eeecccCcH-HHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHHHHH
Confidence 999999997 9999999999999999999999988888887776654431
Q ss_pred --------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceE
Q psy8712 452 --------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL 511 (651)
Q Consensus 452 --------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ 511 (651)
......++.....++..++.++||||+.+++.|||||+|...++|+||+||+||.|++|.
T Consensus 283 L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~ 362 (397)
T KOG0327|consen 283 LRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV 362 (397)
T ss_pred HhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce
Confidence 111111333345556678999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 512 AISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 512 ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
+++++.+ ++...|++||++++..|.++|..
T Consensus 363 ~in~v~~--------------------------------------------------~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 363 AINFVTE--------------------------------------------------EDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeeehH--------------------------------------------------hhHHHHHhHHHhcCCcceecccc
Confidence 9999998 68899999999999999999866
Q ss_pred c
Q psy8712 592 L 592 (651)
Q Consensus 592 ~ 592 (651)
.
T Consensus 393 ~ 393 (397)
T KOG0327|consen 393 F 393 (397)
T ss_pred h
Confidence 4
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-49 Score=441.23 Aligned_cols=302 Identities=33% Similarity=0.530 Sum_probs=253.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++++|++.|+++|.++||..||++|++|||.++.|+||+++||||||||+||++|+++.+.+....
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~----------- 155 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP----------- 155 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc-----------
Confidence 469999999999999999999999999999999999999999999999999999999999987651000
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
+
T Consensus 156 -------------------------------------------------~------------------------------ 156 (475)
T PRK01297 156 -------------------------------------------------K------------------------------ 156 (475)
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 157 -------------------------------------------------------------------------------- 156 (475)
T PRK01297 157 -------------------------------------------------------------------------------- 156 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......+++|||+||+|||.|+++.++.+.+.++ +++..+
T Consensus 157 -------------------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~---~~v~~~ 196 (475)
T PRK01297 157 -------------------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG---LNVMTF 196 (475)
T ss_pred -------------------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCC---CEEEEE
Confidence 0001246899999999999999999999988765 899999
Q ss_pred eCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.+...+.+.+. ..++|||+||++|++++.++.+.++++++|||||||++++++|.+.+..+++.++.. .+.|
T Consensus 197 ~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----~~~q 272 (475)
T PRK01297 197 VGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----EERQ 272 (475)
T ss_pred EccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----CCce
Confidence 99998887777765 468999999999999999888899999999999999999999999999999988752 2479
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE-------------------------EEEEEeCcchHHHH-
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH-------------------------HVVVKIDPQQDETW- 454 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~-------------------------~~~~~~~~~~~~~~- 454 (651)
++++|||++. ++.++++.++.+|..+.+........++. +.+++|+.......
T Consensus 273 ~i~~SAT~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l 351 (475)
T PRK01297 273 TLLFSATFTD-DVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRI 351 (475)
T ss_pred EEEEEeecCH-HHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHH
Confidence 9999999987 89999999999988877665544433333 34555554432111
Q ss_pred -HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 455 -GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 455 -~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
..+ ++..+..++++|+.+.+|||+|+|++|||||+|.+..+|+||+||+||.|+
T Consensus 352 ~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 352 EERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGA 431 (475)
T ss_pred HHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCC
Confidence 111 333456778899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
.|.+++|+++
T Consensus 432 ~g~~i~~~~~ 441 (475)
T PRK01297 432 SGVSISFAGE 441 (475)
T ss_pred CceEEEEecH
Confidence 9999999987
No 30
>KOG0339|consensus
Probab=100.00 E-value=2.6e-50 Score=420.09 Aligned_cols=303 Identities=30% Similarity=0.459 Sum_probs=269.2
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
.++|+.+|++..|..++.+..|..|||||..++|..|.|+||+-.|.||||||.||+.|.+..|.+...
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e----------- 290 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE----------- 290 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-----------
Confidence 368999999999999999999999999999999999999999999999999999999999987766100
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 291 -------------------------------------------------------------------------------- 290 (731)
T KOG0339|consen 291 -------------------------------------------------------------------------------- 290 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 291 -------------------------------------------------------------------------------- 290 (731)
T KOG0339|consen 291 -------------------------------------------------------------------------------- 290 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
....++|..||++||||||.|++.++++|++..+ +++++
T Consensus 291 --------------------------------------L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg---l~~v~ 329 (731)
T KOG0339|consen 291 --------------------------------------LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG---LRVVA 329 (731)
T ss_pred --------------------------------------hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc---ceEEE
Confidence 0124578999999999999999999999998876 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.+..+|...|+.++.|||+|||||+++++.+..++.++.+|||||||+|+++||.++++.|...+.. ++|
T Consensus 330 ~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp------drQ 403 (731)
T KOG0339|consen 330 VYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP------DRQ 403 (731)
T ss_pred eecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC------cce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHH-----------------------
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL----------------------- 457 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l----------------------- 457 (651)
+|+||||++. .|..+++.++.+|+.+.........+.|.|.+..|.+...++-..+
T Consensus 404 tllFsaTf~~-kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 404 TLLFSATFKK-KIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAE 482 (731)
T ss_pred EEEeeccchH-HHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHH
Confidence 9999999986 9999999999999988777666667777777666655432211111
Q ss_pred -------------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC
Q psy8712 458 -------------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA 506 (651)
Q Consensus 458 -------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~ 506 (651)
++.....++|+||..+||+||+++..|||||+-++++.|.|||||+||+
T Consensus 483 ~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRa 562 (731)
T KOG0339|consen 483 EIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRA 562 (731)
T ss_pred HHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccc
Confidence 2233456788999999999999999999999999999999999999999
Q ss_pred CCceEEEEeeeCCccc
Q psy8712 507 ERMGLAISLVSTVPEK 522 (651)
Q Consensus 507 g~~G~ai~lv~~~de~ 522 (651)
|..|.+++|+++.|..
T Consensus 563 g~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 563 GEKGVAYTLVTEKDAE 578 (731)
T ss_pred cccceeeEEechhhHH
Confidence 9999999999986543
No 31
>KOG0332|consensus
Probab=100.00 E-value=1.3e-50 Score=409.96 Aligned_cols=313 Identities=31% Similarity=0.516 Sum_probs=271.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
++|+||+|.|+++++|..|+|..|+.||..|+|++|.. +++++++..|+|||.||.|.+|.+|..
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------------- 156 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------------- 156 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------------
Confidence 68999999999999999999999999999999999986 799999999999999999999986633
Q ss_pred CccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCC
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGT 159 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~ 159 (651)
T Consensus 157 -------------------------------------------------------------------------------- 156 (477)
T KOG0332|consen 157 -------------------------------------------------------------------------------- 156 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccc
Q psy8712 160 DRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSF 239 (651)
Q Consensus 160 ~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~ 239 (651)
T Consensus 157 -------------------------------------------------------------------------------- 156 (477)
T KOG0332|consen 157 -------------------------------------------------------------------------------- 156 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEE
Q psy8712 240 NFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIREL 319 (651)
Q Consensus 240 ~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~ 319 (651)
....|+++.|+||||||.|+.+++.+++++.. +++.
T Consensus 157 -----------------------------------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~---ita~ 192 (477)
T KOG0332|consen 157 -----------------------------------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTE---LTAS 192 (477)
T ss_pred -----------------------------------------cccCCCceeeCchHHHHHHHHHHHHHhcCcee---eeEE
Confidence 13357999999999999999999999999875 8888
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGK 397 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~ 397 (651)
..+.|....+... + ..+|+||||+.+.|++.. +.+.++.++.+|+||||.|++ +||.++-..|.+.+|.
T Consensus 193 yair~sk~~rG~~-i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~------ 263 (477)
T KOG0332|consen 193 YAIRGSKAKRGNK-L--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR------ 263 (477)
T ss_pred EEecCcccccCCc-c--hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC------
Confidence 8777763222111 1 258999999999999988 888999999999999999998 5899999999999996
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHH------------------------
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDET------------------------ 453 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------ 453 (651)
+.|+++||||+.. .+.+|+.++.++|..+.+..++...++|+|+++.|..++.+.
T Consensus 264 ~~QllLFSATf~e-~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~t 342 (477)
T KOG0332|consen 264 NQQLLLFSATFVE-KVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKAT 342 (477)
T ss_pred cceEEeeechhHH-HHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhh
Confidence 7999999999986 999999999999999999999999999999888887664211
Q ss_pred --HH--HH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCC------Chhhhhh
Q psy8712 454 --WG--RL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPD------DKANYVH 498 (651)
Q Consensus 454 --~~--~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~------s~~~Yih 498 (651)
|. .+ ++.....++..|++.+||||++.|++|||||+|. +++.|+|
T Consensus 343 a~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlH 422 (477)
T KOG0332|consen 343 AMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLH 422 (477)
T ss_pred HHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHH
Confidence 11 11 3334556677799999999999999999999995 7899999
Q ss_pred hcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHH
Q psy8712 499 RIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIE 578 (651)
Q Consensus 499 RiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie 578 (651)
|||||||+|+.|.+|.|+..+ +.+..|..||
T Consensus 423 RiGRtGRFGkkG~a~n~v~~~-------------------------------------------------~s~~~mn~iq 453 (477)
T KOG0332|consen 423 RIGRTGRFGKKGLAINLVDDK-------------------------------------------------DSMNIMNKIQ 453 (477)
T ss_pred HhcccccccccceEEEeeccc-------------------------------------------------CcHHHHHHHH
Confidence 999999999999999999874 5688899999
Q ss_pred HHhcCccccccc
Q psy8712 579 EHLNVTIQQVDD 590 (651)
Q Consensus 579 ~~~~~~i~~~~~ 590 (651)
+|++..+.++.+
T Consensus 454 ~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 454 KHFNMKIKRLDP 465 (477)
T ss_pred HHHhhcceecCC
Confidence 999999888765
No 32
>KOG0334|consensus
Probab=100.00 E-value=5e-50 Score=452.00 Aligned_cols=298 Identities=31% Similarity=0.522 Sum_probs=261.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|...|+++.|++.++++||..|||||+.|||+|+.|+|||.+|.||||||++|+||++..+..+
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQ-------------- 430 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQ-------------- 430 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcC--------------
Confidence 579999999999999999999999999999999999999999999999999999999999433320
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 431 -------------------------------------------------------------------------------- 430 (997)
T KOG0334|consen 431 -------------------------------------------------------------------------------- 430 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 431 -------------------------------------------------------------------------------- 430 (997)
T KOG0334|consen 431 -------------------------------------------------------------------------------- 430 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
+......+|.+||++||||||.||++.++.|.+.++ ++++++
T Consensus 431 -----------------------------------r~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~---ir~v~v 472 (997)
T KOG0334|consen 431 -----------------------------------RPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG---IRVVCV 472 (997)
T ss_pred -----------------------------------CChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC---ceEEEe
Confidence 011124589999999999999999999999999876 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc---ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL---SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l---~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
+||....+|+..|++++.|+|+||||+.+++..+.. .+.++.+||+||||+|++++|.|++..|+++++. .
T Consensus 473 ygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp------d 546 (997)
T KOG0334|consen 473 YGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP------D 546 (997)
T ss_pred cCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch------h
Confidence 999999999999999999999999999998865544 4566669999999999999999999999999987 6
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHH-----------------------
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWG----------------------- 455 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------- 455 (651)
+|+++||||++. .+..++...++.|+.|.+.....+...+.|.+..|..+.++...
T Consensus 547 rQtvlfSatfpr-~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~ 625 (997)
T KOG0334|consen 547 RQTVLFSATFPR-SMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEK 625 (997)
T ss_pred hhhhhhhhhhhH-HHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchH
Confidence 899999999997 79999999999999999998888888898888777744321111
Q ss_pred ------HH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccc
Q psy8712 456 ------RL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504 (651)
Q Consensus 456 ------~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~G 504 (651)
.| ++...+..+.+|+.++||+|+.++.+|||||+|..+++|+||+||||
T Consensus 626 ~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTg 705 (997)
T KOG0334|consen 626 ADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTG 705 (997)
T ss_pred HHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccc
Confidence 11 22334455667899999999999999999999999999999999999
Q ss_pred cCCCceEEEEeeeC
Q psy8712 505 RAERMGLAISLVST 518 (651)
Q Consensus 505 R~g~~G~ai~lv~~ 518 (651)
|+|++|.|++|+.+
T Consensus 706 ragrkg~AvtFi~p 719 (997)
T KOG0334|consen 706 RAGRKGAAVTFITP 719 (997)
T ss_pred cCCccceeEEEeCh
Confidence 99999999999998
No 33
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.5e-48 Score=422.26 Aligned_cols=316 Identities=30% Similarity=0.522 Sum_probs=269.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++||+++.+.++|.++||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+..
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--------------- 92 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--------------- 92 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------------
Confidence 57999999999999999999999999999999999999999999999999999999999975421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 93 -------------------------------------------------------------------------------- 92 (401)
T PTZ00424 93 -------------------------------------------------------------------------------- 92 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 93 -------------------------------------------------------------------------------- 92 (401)
T PTZ00424 93 -------------------------------------------------------------------------------- 92 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..+++++|||+||++||.|+.+.+..++.... +.+..+
T Consensus 93 ---------------------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~~ 130 (401)
T PTZ00424 93 ---------------------------------------DLNACQALILAPTRELAQQIQKVVLALGDYLK---VRCHAC 130 (401)
T ss_pred ---------------------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcC---ceEEEE
Confidence 01234799999999999999999999987654 788888
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.|+.....+...+.++++|+|+||+++.+++.++.+.++++++|||||||++++++|...+..+++.++. +.|+
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~------~~~~ 204 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP------DVQV 204 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCC------CcEE
Confidence 9999888888888889999999999999999988888999999999999999999999999999998876 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE--------------------------EEeCcchHH---
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV--------------------------VKIDPQQDE--- 452 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~--------------------------~~~~~~~~~--- 452 (651)
+++|||+++ .+..+...++.+|..+.+.........+.+.+ ++|++....
T Consensus 205 i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 205 ALFSATMPN-EILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYL 283 (401)
T ss_pred EEEEecCCH-HHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHH
Confidence 999999997 88889999998887776665544444444443 344333210
Q ss_pred ------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 453 ------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 453 ------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.....++..+..++.+|+.+.+|||+|++++|||||+|.+..+|+||+||+||.|+
T Consensus 284 ~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 284 TKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 11111334456778899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|.|++|+++ ++...++.+|++++..+...
T Consensus 364 ~G~~i~l~~~--------------------------------------------------~~~~~~~~~e~~~~~~~~~~ 393 (401)
T PTZ00424 364 KGVAINFVTP--------------------------------------------------DDIEQLKEIERHYNTQIEEM 393 (401)
T ss_pred CceEEEEEcH--------------------------------------------------HHHHHHHHHHHHHCCccccc
Confidence 9999999987 67888999999999888876
Q ss_pred ccc
Q psy8712 589 DDK 591 (651)
Q Consensus 589 ~~~ 591 (651)
++.
T Consensus 394 ~~~ 396 (401)
T PTZ00424 394 PME 396 (401)
T ss_pred Ccc
Confidence 543
No 34
>KOG0329|consensus
Probab=100.00 E-value=2.2e-49 Score=382.85 Aligned_cols=318 Identities=29% Similarity=0.503 Sum_probs=274.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
|.|.++=|.|||++|+-+.||..|+.+|.++||...-|-||+++|.+|.|||..|.|..||.+-.
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep--------------- 106 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP--------------- 106 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC---------------
Confidence 67899999999999999999999999999999999999999999999999999999999985522
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 107 -------------------------------------------------------------------------------- 106 (387)
T KOG0329|consen 107 -------------------------------------------------------------------------------- 106 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 107 -------------------------------------------------------------------------------- 106 (387)
T KOG0329|consen 107 -------------------------------------------------------------------------------- 106 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......+|++|.|||||-|+.+...+|++|++ ++++.+.
T Consensus 107 ---------------------------------------v~g~vsvlvmchtrelafqi~~ey~rfskymP--~vkvaVF 145 (387)
T KOG0329|consen 107 ---------------------------------------VDGQVSVLVMCHTRELAFQISKEYERFSKYMP--SVKVSVF 145 (387)
T ss_pred ---------------------------------------CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC--CceEEEE
Confidence 11233689999999999999999999999987 7999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||..++.....|++-|||+||||||++.+.+++.+++++++.+|+||||.|+++ ..+.++++|++..|. ..|
T Consensus 146 fGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~------~KQ 219 (387)
T KOG0329|consen 146 FGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH------EKQ 219 (387)
T ss_pred EcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc------cce
Confidence 9999999999999999999999999999999999999999999999999999975 678899999999988 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCC-ccCceEEEEEEeCcchH--HHHHHH----------------hhcc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA-VPETVHHVVVKIDPQQD--ETWGRL----------------RSHI 461 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~~--~~~~~l----------------~~~~ 461 (651)
+++||||++. +++..++++|.+|..|.++.+.. +...+.|+|+...+.++ +....+ +-.+
T Consensus 220 vmmfsatlsk-eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~f 298 (387)
T KOG0329|consen 220 VMMFSATLSK-EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLSF 298 (387)
T ss_pred eeeeeeecch-hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhhh
Confidence 9999999997 99999999999999888776542 34444454444433221 111111 0001
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQ 541 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~ 541 (651)
. ..+++|+.+.||+||..|+.|||||+|.+.++|+||+||+||+|.+|.+|+|++.+
T Consensus 299 ~-kr~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e---------------------- 355 (387)
T KOG0329|consen 299 Q-KRLVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE---------------------- 355 (387)
T ss_pred h-hhhHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcch----------------------
Confidence 1 22789999999999999999999999999999999999999999999999999984
Q ss_pred cccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccc
Q psy8712 542 LTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKL 592 (651)
Q Consensus 542 l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~ 592 (651)
++...|..+++++...|.++|..+
T Consensus 356 ---------------------------~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 356 ---------------------------NDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred ---------------------------hhHHHhchhhHhhhccHhhcCccc
Confidence 678889999999999999888653
No 35
>KOG4284|consensus
Probab=100.00 E-value=8.6e-48 Score=410.24 Aligned_cols=230 Identities=28% Similarity=0.450 Sum_probs=204.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
...++++|++||||+|.|+.+++..++..+. ++++.+++||.+.......|++ ++|+||||||+.+++..+.++.++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~--g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFT--GARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhccccc--CcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccc
Confidence 4467999999999999999999999998765 6999999999999888877754 789999999999999999999999
Q ss_pred cceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE
Q psy8712 362 CRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH 440 (651)
Q Consensus 362 l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~ 440 (651)
++++|+||||.|++ ..|.++|..|+..||+ .+|+++||||+|. .+.+++.++|++|..|.....+..+-.|+
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~------~rQv~a~SATYp~-nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQ------IRQVAAFSATYPR-NLDNLLSKFMRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcch------hheeeEEeccCch-hHHHHHHHHhcccceeecccCCceeechh
Confidence 99999999999999 5699999999999999 6899999999996 99999999999999999999998888999
Q ss_pred EEEEEeCcch---------H----HHHH-----------------------------------------------HHhhc
Q psy8712 441 HVVVKIDPQQ---------D----ETWG-----------------------------------------------RLRSH 460 (651)
Q Consensus 441 ~~~~~~~~~~---------~----~~~~-----------------------------------------------~l~~~ 460 (651)
|+++.+++.. . ..+. .-.+.
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 9887766542 0 0000 00455
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+.+.++++||..+||||-++|++|||.|.|.+.+.|.|||||+||+|..|.+++|+..+.+
T Consensus 321 f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 321 FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 6777888999999999999999999999999999999999999999999999999998654
No 36
>KOG0350|consensus
Probab=100.00 E-value=3e-45 Score=382.71 Aligned_cols=231 Identities=27% Similarity=0.406 Sum_probs=175.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-C----CcEEEECchhhHHHHh-CCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-G----VDIVVGTPGRMEDLIS-GGHLS 358 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~----~dIlV~TP~rL~~ll~-~~~l~ 358 (651)
.+||||+||++|+.|++++|.++....+ +.|+.+.|..+.+.....|.+ . +||||+|||||.|++. ...++
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tg---L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTG---LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCc---eEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 4899999999999999999999987654 888888888888777777754 2 4999999999999998 57889
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCcc----------------C------------CCCceeEEEEeeccCh
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKIT----------------S------------DGKRLQMIVCSATLHD 410 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~----------------~------------~~~~~Q~l~~SATl~~ 410 (651)
|++++++||||||+|++..|...+..++..+.... + .....+.++||||+..
T Consensus 293 Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsq 372 (620)
T KOG0350|consen 293 LKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQ 372 (620)
T ss_pred hhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhc
Confidence 99999999999999999877766555443332110 0 0123568899999986
Q ss_pred HHHHHHHHHhccCCeEEEccC----CCCccCceE-------------------------EEEEEeCcchHH--HH-----
Q psy8712 411 FDVKKMAERLMYFPTWVDLKG----EDAVPETVH-------------------------HVVVKIDPQQDE--TW----- 454 (651)
Q Consensus 411 ~~v~~l~~~~l~~p~~i~~~~----~~~~~~~i~-------------------------~~~~~~~~~~~~--~~----- 454 (651)
+-..+..--+..|....+.. .-..+..+. +.++++++.+.. +.
T Consensus 373 -dP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v 451 (620)
T KOG0350|consen 373 -DPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKV 451 (620)
T ss_pred -ChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHH
Confidence 67777776677775544442 223333333 444555443210 00
Q ss_pred ------------------------HHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce
Q psy8712 455 ------------------------GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG 510 (651)
Q Consensus 455 ------------------------~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G 510 (651)
..-+......+++|+|.++||||+.+|+.|||||+|.+...|+||+|||||||+.|
T Consensus 452 ~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G 531 (620)
T KOG0350|consen 452 EFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG 531 (620)
T ss_pred HhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc
Confidence 00134445678899999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCC
Q psy8712 511 LAISLVSTV 519 (651)
Q Consensus 511 ~ai~lv~~~ 519 (651)
.|++++..+
T Consensus 532 ~a~tll~~~ 540 (620)
T KOG0350|consen 532 YAITLLDKH 540 (620)
T ss_pred eEEEeeccc
Confidence 999999984
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.9e-43 Score=404.25 Aligned_cols=226 Identities=18% Similarity=0.265 Sum_probs=164.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC----CcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG----HLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~----~l~l~ 360 (651)
+++|||+||||||.|+.+.++.+. .. ++++..+.|+.+. .+...+.++++|||+||+++...+... ...++
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~-~~---~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~ 156 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELT-LR---GVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLR 156 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhc-cC---CeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHh
Confidence 479999999999999999999987 22 4888777777664 445667778999999999987533221 12378
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccC-CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccC--
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS-DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE-- 437 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~-~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~-- 437 (651)
++++|||||||.+.+ .|+.++..++++++.... .+.++|++++|||+++ . .++++.++..|..+ +........
T Consensus 157 ~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n-~-~~~~~~l~g~~~~~-i~~~~~~~~~~ 232 (742)
T TIGR03817 157 RLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTAD-P-AAAASRLIGAPVVA-VTEDGSPRGAR 232 (742)
T ss_pred cCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCC-H-HHHHHHHcCCCeEE-ECCCCCCcCce
Confidence 999999999999976 477777777666543211 1236899999999986 4 45677777766433 211110000
Q ss_pred -------------------------------------ceEEEEEEeCcchHHHHH-------------------------
Q psy8712 438 -------------------------------------TVHHVVVKIDPQQDETWG------------------------- 455 (651)
Q Consensus 438 -------------------------------------~i~~~~~~~~~~~~~~~~------------------------- 455 (651)
.-.+.++||++++.....
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg 312 (742)
T TIGR03817 233 TVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAG 312 (742)
T ss_pred EEEEecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecC
Confidence 002456666655421110
Q ss_pred ----------HHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 456 ----------RLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 456 ----------~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
..++..+..++++|+.+++||||++|++|||||+|.+.++|+||+|||||+|+.|.+++++..+
T Consensus 313 ~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 313 YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 1123345667889999999999999999999999999999999999999999999999998753
No 38
>KOG0344|consensus
Probab=100.00 E-value=3.2e-42 Score=368.38 Aligned_cols=229 Identities=25% Similarity=0.360 Sum_probs=181.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH-HHHHhccCCcEEEECchhhHHHHhCCC--cccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD-QMSVLSSGVDIVVGTPGRMEDLISGGH--LSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~-q~~~L~~~~dIlV~TP~rL~~ll~~~~--l~l~ 360 (651)
+.+++|+.||||||.|++.++.++...- ..++++..+.......+ .........||+|+||.++..++..+. ++++
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~-~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDE-GTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCC-CCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 4589999999999999999999987221 11244444333322222 222223458999999999999998876 7899
Q ss_pred CcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce
Q psy8712 361 HCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV 439 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i 439 (651)
.|.++|+||||++++. .|..++..|+..+... ...+-+||||++. .|++.++..+.++..|.+...+....+|
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~-----~i~~a~FSat~~~-~VEE~~~~i~~~~~~vivg~~~sa~~~V 361 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSP-----DIRVALFSATISV-YVEEWAELIKSDLKRVIVGLRNSANETV 361 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCc-----chhhhhhhccccH-HHHHHHHHhhccceeEEEecchhHhhhh
Confidence 9999999999999998 8999999999888662 6889999999996 9999999999999999988888777788
Q ss_pred EEEEEEeCcch----------------------------HHHHHHH--hhcc------------------------ccce
Q psy8712 440 HHVVVKIDPQQ----------------------------DETWGRL--RSHI------------------------QTDG 465 (651)
Q Consensus 440 ~~~~~~~~~~~----------------------------~~~~~~l--~~~~------------------------~~~~ 465 (651)
.|-.++|-.+. .+++..| ..++ +...
T Consensus 362 ~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 362 DQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred hhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 77666665443 1222222 2233 3444
Q ss_pred eeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+.||+.++||||+.+|+.|||||+|.+..+|+||+||+||+|+.|.||+|++++
T Consensus 442 LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 442 LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccc
Confidence 557899999999999999999999999999999999999999999999999984
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.8e-38 Score=361.34 Aligned_cols=221 Identities=18% Similarity=0.240 Sum_probs=153.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc------cCCcEEEECchhhHH--HHhCC--
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS------SGVDIVVGTPGRMED--LISGG-- 355 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~------~~~dIlV~TP~rL~~--ll~~~-- 355 (651)
.+|||+|+++|+.++...+... ++++..+.++....++...+. ..++||++||++|.. .+.+.
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~ 574 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE 574 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH
Confidence 5899999999998655554443 388899999998877765553 368999999999852 22211
Q ss_pred Cc-ccCCcceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc--CCeEE
Q psy8712 356 HL-SLTHCRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY--FPTWV 427 (651)
Q Consensus 356 ~l-~l~~l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~--~p~~i 427 (651)
.+ ....+.+|||||||++++|| |++++..+ ...+| +.|++++|||+++ .+.+.+...+. ++..+
T Consensus 575 ~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-------~vPilALTATAT~-~V~eDI~~~L~l~~~~vf 646 (1195)
T PLN03137 575 NLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-------NIPVLALTATATA-SVKEDVVQALGLVNCVVF 646 (1195)
T ss_pred hhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC-------CCCeEEEEecCCH-HHHHHHHHHcCCCCcEEe
Confidence 11 23458899999999999997 78877653 33344 4789999999997 55543333332 22211
Q ss_pred E-----------ccCCCC-c----cCce------EEEEEEeCcchH--HHHHHH-------------------------h
Q psy8712 428 D-----------LKGEDA-V----PETV------HHVVVKIDPQQD--ETWGRL-------------------------R 458 (651)
Q Consensus 428 ~-----------~~~~~~-~----~~~i------~~~~~~~~~~~~--~~~~~l-------------------------~ 458 (651)
. +..... . ..-+ ...+++|.++++ .....| +
T Consensus 647 r~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 647 RQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred ecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHH
Confidence 1 111100 0 0000 123455655432 111111 3
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
......+|++|+.+.+|||+|+|++|||||+|.++++|+||+|||||+|..|.|++|++..|.
T Consensus 727 ~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 727 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred hcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 334567788999999999999999999999999999999999999999999999999987554
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.6e-37 Score=342.14 Aligned_cols=224 Identities=15% Similarity=0.172 Sum_probs=155.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h-ccCCcEEEECchhhHHHH-hCCCc-cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L-SSGVDIVVGTPGRMEDLI-SGGHL-SL 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L-~~~~dIlV~TP~rL~~ll-~~~~l-~l 359 (651)
.+|||+||++|+.|+.+.++.++ +.+..+.++....++... + ...++|+++||+++.... ....+ ..
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~g-------i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~ 125 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASG-------IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEER 125 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhc
Confidence 58999999999999998887653 777777777765543322 2 235899999999975322 11122 46
Q ss_pred CCcceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEcc---
Q psy8712 360 THCRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDLK--- 430 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~~--- 430 (651)
.++++|||||||++++|| |++++..+ ...+| +.|++++|||+++....++.+.+ +.+|..+...
T Consensus 126 ~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r 198 (470)
T TIGR00614 126 KGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-------NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR 198 (470)
T ss_pred CCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-------CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC
Confidence 889999999999999987 66765544 34444 37899999999973334444433 2334322211
Q ss_pred --------CCC-Cc----cC------ceEEEEEEeCcchHHH--HH-------------------------HHhhccccc
Q psy8712 431 --------GED-AV----PE------TVHHVVVKIDPQQDET--WG-------------------------RLRSHIQTD 464 (651)
Q Consensus 431 --------~~~-~~----~~------~i~~~~~~~~~~~~~~--~~-------------------------~l~~~~~~~ 464 (651)
... .. .. .-...+++|++.+... .. ..+......
T Consensus 199 ~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~ 278 (470)
T TIGR00614 199 PNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ 278 (470)
T ss_pred CCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc
Confidence 110 00 00 0112366666554211 11 113344567
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
++++|+.+.+|||+|+|++||||++|.+.++|+||+||+||.|..|.|++|+++.|...
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 78899999999999999999999999999999999999999999999999999865543
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.3e-36 Score=350.04 Aligned_cols=277 Identities=19% Similarity=0.196 Sum_probs=202.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++..+.|+.+..++. ..+.. .+|||||||. ++ ++.+.++
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~---i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~ 572 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFP---VTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFK 572 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCC---cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcc
Confidence 4799999999999999999999877665 8999999887755443 33444 5899999994 22 3556789
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc----
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP---- 436 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~---- 436 (651)
++++|||||+|++ +......++.++. ++|+++||||+.+ ....++...+.++..|...+....+
T Consensus 573 ~L~llVIDEahrf-----gv~~~~~L~~~~~------~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R~~V~t~ 640 (926)
T TIGR00580 573 DLGLLIIDEEQRF-----GVKQKEKLKELRT------SVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDRLPVRTF 640 (926)
T ss_pred cCCEEEeeccccc-----chhHHHHHHhcCC------CCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCccceEEE
Confidence 9999999999984 3344555666654 5899999999876 5656666566666665544332111
Q ss_pred -----------------CceEEEEEEeCcchH--HHHHHH---------------------------hhccccceeeccc
Q psy8712 437 -----------------ETVHHVVVKIDPQQD--ETWGRL---------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 437 -----------------~~i~~~~~~~~~~~~--~~~~~l---------------------------~~~~~~~~l~~td 470 (651)
..-.+.+++|+..+. .....+ +...+.+++++|+
T Consensus 641 v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ 720 (926)
T TIGR00580 641 VMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT 720 (926)
T ss_pred EEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 001244555554321 111111 3334567788899
Q ss_pred cccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCC
Q psy8712 471 NARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNS 549 (651)
Q Consensus 471 ~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (651)
.+++|||+|++++||+++.|. +...|+||+||+||.|+.|.||+|+.+.+.
T Consensus 721 iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~---------------------------- 772 (926)
T TIGR00580 721 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKA---------------------------- 772 (926)
T ss_pred hhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCccc----------------------------
Confidence 999999999999999999986 577999999999999999999999876311
Q ss_pred CcchhhccccccCCcccchhHHHHHHHHHHHh----cCccccccccccCCcccCCCceeecceecccC--ccchhhHhhh
Q psy8712 550 QVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHL----NVTIQQVDDKLEIPADEFDGKVVYGQKRVNMG--SSYENHVTQM 623 (651)
Q Consensus 550 ~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~----~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~ 623 (651)
+..+..+.|+.|++.. |..+++.+..++ .++...|.++.+.. ..|..+.+.+
T Consensus 773 ----------------l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~R------g~G~~lG~~QsG~~~~~~~~~~~~~l 830 (926)
T TIGR00580 773 ----------------LTEDAQKRLEAIQEFSELGAGFKIALHDLEIR------GAGNLLGEEQSGHIESIGFDLYMELL 830 (926)
T ss_pred ----------------CCHHHHHHHHHHHHhhcchhhHHHHHHHHHhc------CCcCCCCCcccCchhhccHHHHHHHH
Confidence 1114678899999875 688888887777 56666788887764 6677788889
Q ss_pred hHHHHHHH
Q psy8712 624 EPSVNKLS 631 (651)
Q Consensus 624 ~~~~~el~ 631 (651)
.+++.+|.
T Consensus 831 ~~a~~~~~ 838 (926)
T TIGR00580 831 EEAIEELK 838 (926)
T ss_pred HHHHHHHh
Confidence 99999887
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.4e-36 Score=353.41 Aligned_cols=232 Identities=18% Similarity=0.280 Sum_probs=160.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH-------hhcc--CCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIK-------FKKF--ITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG 354 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~-------l~~~--~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~ 354 (651)
++++|||+|||+|+.|+++.+.. +... ...+++++.+.+|+.+...+...+.+.++|+|+||++|..++.+
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~ 163 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS 163 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC
Confidence 56899999999999999886553 2211 11125899999999998888888888999999999999888876
Q ss_pred CCc--ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-----C--e
Q psy8712 355 GHL--SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-----P--T 425 (651)
Q Consensus 355 ~~l--~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-----p--~ 425 (651)
..+ .++++++|||||||.+++..++..+..++.++.... +.+.|++++|||+++ ...+++.+... + .
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~--~~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEP--LEEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCC--HHHHHHHhcCccccCCCCce
Confidence 654 478999999999999998766666665555544322 125899999999974 44555443221 1 1
Q ss_pred EE-E----------cc-C-CC---Ccc---------------CceEEEEEEeCcchHHH--HHHH---------------
Q psy8712 426 WV-D----------LK-G-ED---AVP---------------ETVHHVVVKIDPQQDET--WGRL--------------- 457 (651)
Q Consensus 426 ~i-~----------~~-~-~~---~~~---------------~~i~~~~~~~~~~~~~~--~~~l--------------- 457 (651)
.+ . +. . .+ ... ..-...+++|++..... ...+
T Consensus 240 ~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 240 EIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred EEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 11 0 00 0 00 000 01134677887654211 1111
Q ss_pred ----------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC-CCceEEEEeeeCC
Q psy8712 458 ----------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA-ERMGLAISLVSTV 519 (651)
Q Consensus 458 ----------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~~~ 519 (651)
++.....+++||+.+.+|||+|+|++||+|+.|.+..+|+||+||+||. |..+.++.+....
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 2333456788899999999999999999999999999999999999987 4333444444433
No 43
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.5e-35 Score=351.12 Aligned_cols=274 Identities=18% Similarity=0.202 Sum_probs=203.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++....+ +++.++.|+.+..++...+. ..+|||||||+.+ +..+.++
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~---v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~ 721 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWK 721 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCC---ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHh
Confidence 4899999999999999999998665544 88888999988777765543 3689999999633 2456688
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccC---
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE--- 437 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~--- 437 (651)
++++|||||+|++ ++. ....++.++. ++|+++||||+.+ .+..++...+.++..|........+-
T Consensus 722 ~L~lLVIDEahrf---G~~--~~e~lk~l~~------~~qvLl~SATpip-rtl~l~~~gl~d~~~I~~~p~~r~~v~~~ 789 (1147)
T PRK10689 722 DLGLLIVDEEHRF---GVR--HKERIKAMRA------DVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARRLAVKTF 789 (1147)
T ss_pred hCCEEEEechhhc---chh--HHHHHHhcCC------CCcEEEEcCCCCH-HHHHHHHhhCCCcEEEecCCCCCCCceEE
Confidence 9999999999996 332 2445566665 6899999999887 77788888888887776544321110
Q ss_pred ------------------ceEEEEEEeCcchH--HHHHHH---------------------------hhccccceeeccc
Q psy8712 438 ------------------TVHHVVVKIDPQQD--ETWGRL---------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 438 ------------------~i~~~~~~~~~~~~--~~~~~l---------------------------~~~~~~~~l~~td 470 (651)
.-.+++++++..+. .....+ +...+.++++||+
T Consensus 790 ~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd 869 (1147)
T PRK10689 790 VREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 (1147)
T ss_pred EEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc
Confidence 00245555554321 111111 3334567788999
Q ss_pred cccCCCCCCCCCEEE-----EeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccc
Q psy8712 471 NARPGIDISGLPFII-----NMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDV 545 (651)
Q Consensus 471 ~~~rGIDip~v~~VI-----n~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~ 545 (651)
.+++|||+|++++|| ||++| .|+||+|||||.|+.|.|++++....
T Consensus 870 IierGIDIP~v~~VIi~~ad~fgla----q~~Qr~GRvGR~g~~g~a~ll~~~~~------------------------- 920 (1147)
T PRK10689 870 IIETGIDIPTANTIIIERADHFGLA----QLHQLRGRVGRSHHQAYAWLLTPHPK------------------------- 920 (1147)
T ss_pred hhhcccccccCCEEEEecCCCCCHH----HHHHHhhccCCCCCceEEEEEeCCCc-------------------------
Confidence 999999999999999 56655 79999999999999999998886521
Q ss_pred cCCCCcchhhccccccCCcccchhHHHHHHHHHHHhc----CccccccccccCCcccCCCceeecceecccC--ccchhh
Q psy8712 546 KGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLN----VTIQQVDDKLEIPADEFDGKVVYGQKRVNMG--SSYENH 619 (651)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~----~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~ 619 (651)
.+.-+..+.|+.|+++.. ..|++.+.+++ +++...|.++.+.. ..|..+
T Consensus 921 -------------------~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~r------g~g~~~g~~q~g~~~~~g~~~y 975 (1147)
T PRK10689 921 -------------------AMTTDAQKRLEAIASLEDLGAGFALATHDLEIR------GAGELLGEEQSGQMETIGFSLY 975 (1147)
T ss_pred -------------------ccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc------CCccCCCCccCCCccccCHHHH
Confidence 001145778889998754 77888887777 66777888888764 789999
Q ss_pred HhhhhHHHHHHHH
Q psy8712 620 VTQMEPSVNKLSK 632 (651)
Q Consensus 620 ~~~~~~~~~el~~ 632 (651)
.+.|.+++.+|.+
T Consensus 976 ~~~l~~~~~~~~~ 988 (1147)
T PRK10689 976 MELLENAVDALKA 988 (1147)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.2e-35 Score=335.12 Aligned_cols=221 Identities=15% Similarity=0.197 Sum_probs=154.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hc-cCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LS-SGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~-~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+|||+|+++|+.|+.+.++.++ +.+.++.++.....+... +. ...+++++||+++........+...+
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~g-------i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~ 139 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLANG-------VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWN 139 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHcC-------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCC
Confidence 47999999999999999888753 677777777766554432 22 35799999999986322112344567
Q ss_pred cceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHH-HHHHHh-ccCCeEEEccCCC-
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVK-KMAERL-MYFPTWVDLKGED- 433 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~-~l~~~~-l~~p~~i~~~~~~- 433 (651)
+++|||||||++++|| |++++..+ ...+| +.|++++|||+++ .+. ++...+ +.+|.........
T Consensus 140 l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-------~~~~v~lTAT~~~-~~~~di~~~l~l~~~~~~~~~~~r~ 211 (607)
T PRK11057 140 PALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------TLPFMALTATADD-TTRQDIVRLLGLNDPLIQISSFDRP 211 (607)
T ss_pred CCEEEEeCccccccccCcccHHHHHHHHHHHhCC-------CCcEEEEecCCCh-hHHHHHHHHhCCCCeEEEECCCCCC
Confidence 9999999999999986 66665443 44444 3799999999997 444 344433 3344322111000
Q ss_pred ----------Ccc---------CceEEEEEEeCcchHHH--HHHH-------------------------hhccccceee
Q psy8712 434 ----------AVP---------ETVHHVVVKIDPQQDET--WGRL-------------------------RSHIQTDGVH 467 (651)
Q Consensus 434 ----------~~~---------~~i~~~~~~~~~~~~~~--~~~l-------------------------~~~~~~~~l~ 467 (651)
... ..-...+++|++.+... ...+ +......+++
T Consensus 212 nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLV 291 (607)
T PRK11057 212 NIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVV 291 (607)
T ss_pred cceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 000 00123466666654221 1111 2334567788
Q ss_pred ccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 468 ~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+|+.+.+|||+|+|++|||||+|.+.++|+||+|||||.|..|.|++|+++.|.
T Consensus 292 aT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred EechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999999999999999999999999999998653
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-35 Score=344.43 Aligned_cols=223 Identities=20% Similarity=0.296 Sum_probs=162.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++||.|+++.++.+... ++++..++|+...... . ...+||+|+||+++..+++++...++++++|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~~----g~~v~~~tGd~~~~~~--~-l~~~~IiV~Tpek~~~llr~~~~~l~~v~lv 141 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEEL----GVRVGISTGDYDSRDE--W-LGDNDIIVATSEKVDSLLRNGAPWLDDITCV 141 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhcC----CCEEEEEeCCcCcccc--c-cCCCCEEEECHHHHHHHHhcChhhhhhcCEE
Confidence 6999999999999999999987542 4888899998764432 1 2458999999999999998776668899999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc-------CCeEEE--c-------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY-------FPTWVD--L------- 429 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-------~p~~i~--~------- 429 (651)
||||+|.+.+.++++.++.++.++.... .+.|++++|||++ +..++++++-. .|..+. +
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~---~~~qii~lSATl~--n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~ 216 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLN---PDLQVVALSATIG--NADELADWLDAELVDSEWRPIDLREGVFYGGAIH 216 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcC---CCCcEEEEcccCC--CHHHHHHHhCCCcccCCCCCCCCeeeEecCCeec
Confidence 9999999998888888888877664321 1589999999997 45666665421 121111 0
Q ss_pred -cCCC-Cc---------------cCceEEEEEEeCcchHHH---------------------------------------
Q psy8712 430 -KGED-AV---------------PETVHHVVVKIDPQQDET--------------------------------------- 453 (651)
Q Consensus 430 -~~~~-~~---------------~~~i~~~~~~~~~~~~~~--------------------------------------- 453 (651)
.... .. ...-.+.+++|++++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (737)
T PRK02362 217 FDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSK 296 (737)
T ss_pred cccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccH
Confidence 0000 00 001135677777654211
Q ss_pred ------------------------HHHHhhccccceeeccccccCCCCCCCCCEEEE----eC-----CCCChhhhhhhc
Q psy8712 454 ------------------------WGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----MT-----LPDDKANYVHRI 500 (651)
Q Consensus 454 ------------------------~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d-----lP~s~~~YihRi 500 (651)
.+..++.....++.+|+.+++|+|+|.+++||+ || .|.+..+|+||+
T Consensus 297 ~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~ 376 (737)
T PRK02362 297 DLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMA 376 (737)
T ss_pred HHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHh
Confidence 001123334566778999999999999999998 77 689999999999
Q ss_pred CccccCCCc--eEEEEeeeCCc
Q psy8712 501 GRVGRAERM--GLAISLVSTVP 520 (651)
Q Consensus 501 GR~GR~g~~--G~ai~lv~~~d 520 (651)
|||||.|.. |.|++++.+.+
T Consensus 377 GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 377 GRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hcCCCCCCCCCceEEEEecCch
Confidence 999999875 99999987643
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.9e-35 Score=335.26 Aligned_cols=224 Identities=18% Similarity=0.217 Sum_probs=167.2
Q ss_pred CCeEEE-EeCCHHHHHHHHHHHHHhhccCC--------------------CCCeeEEEEeCCccHHHHHHHhccCCcEEE
Q psy8712 284 APQAII-IEPSRELAEQTFNQIIKFKKFIT--------------------DPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342 (651)
Q Consensus 284 ~p~aLI-L~PTreLa~Qi~~~~~~l~~~~~--------------------~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV 342 (651)
.|++|| ++||||||.|+++.++++++++. ...+++.+++||.+...|+..+..+++|||
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIV 140 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIV 140 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEE
Confidence 356676 55999999999999999998762 235999999999999999999999999999
Q ss_pred ECchhhHHHHhCCCcc----------------cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 343 GTPGRMEDLISGGHLS----------------LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 343 ~TP~rL~~ll~~~~l~----------------l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
||+ |++.++.+. ++++++||||||| ++++|.+++..|++.+... +...++|+++|||
T Consensus 141 gT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp-~~~rprQtLLFSA 213 (844)
T TIGR02621 141 GTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP-PDFLPLRVVELTA 213 (844)
T ss_pred ECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC-cccccceEEEEec
Confidence 995 666666552 7889999999999 6789999999999975210 0111379999999
Q ss_pred ccChHHHHHHHHHhccCCeEEEccCCCCccCceE---------------------------EEEEEeCcchHH--H----
Q psy8712 407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH---------------------------HVVVKIDPQQDE--T---- 453 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~---------------------------~~~~~~~~~~~~--~---- 453 (651)
|++. ++.++...++.+|..+.+.......+++. +.+++|++.+.. .
T Consensus 214 T~p~-ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L 292 (844)
T TIGR02621 214 TSRT-DGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKL 292 (844)
T ss_pred CCCc-cHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHH
Confidence 9987 88888888887776555544333322222 345555554311 1
Q ss_pred -------------------------HHHHhh----cc------ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhh
Q psy8712 454 -------------------------WGRLRS----HI------QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH 498 (651)
Q Consensus 454 -------------------------~~~l~~----~~------~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~Yih 498 (651)
+..++. +. ...++++|+.+++||||+. ++|||+..| .++|+|
T Consensus 293 ~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQ 369 (844)
T TIGR02621 293 PKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQ 369 (844)
T ss_pred HhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHH
Confidence 111111 10 1457899999999999986 899998877 699999
Q ss_pred hcCccccCCCc-eEEEEeeeC
Q psy8712 499 RIGRVGRAERM-GLAISLVST 518 (651)
Q Consensus 499 RiGR~GR~g~~-G~ai~lv~~ 518 (651)
|+||+||+|+. +.+++++..
T Consensus 370 RiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 370 RFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhcccCCCCCCCCceEEEEee
Confidence 99999999985 445777754
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-34 Score=331.33 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=155.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+|||+|+++|+.|+.+.++.++ +.+..+.++.+..+....+ ....+|+++||+++........+...+
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~g-------i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~ 127 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAAG-------VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIP 127 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCC
Confidence 47899999999999999888763 7778888887766544332 346899999999996533334455678
Q ss_pred cceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc--CCeEEEcc----
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY--FPTWVDLK---- 430 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~--~p~~i~~~---- 430 (651)
+.+|||||||++++|| |++.+..+ ...+|. .+++++|||+++ .+.......+. ++..+...
T Consensus 128 l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-------~~vi~lTAT~~~-~~~~~i~~~l~~~~~~~~~~~~~r~ 199 (591)
T TIGR01389 128 IALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-------VPRIALTATADA-ETRQDIRELLRLADANEFITSFDRP 199 (591)
T ss_pred CCEEEEeCCcccccccCccHHHHHHHHHHHHhCCC-------CCEEEEEeCCCH-HHHHHHHHHcCCCCCCeEecCCCCC
Confidence 9999999999999986 77766554 344544 469999999997 55443333332 33222110
Q ss_pred -------CCCCc----cC-----ceEEEEEEeCcchHH--HHHHH-------------------------hhccccceee
Q psy8712 431 -------GEDAV----PE-----TVHHVVVKIDPQQDE--TWGRL-------------------------RSHIQTDGVH 467 (651)
Q Consensus 431 -------~~~~~----~~-----~i~~~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~ 467 (651)
..... .+ .-...+++|++.+.. ....+ +......+++
T Consensus 200 nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 200 NLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred CcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 00000 00 002245666655421 11111 2223467788
Q ss_pred ccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 468 ~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
+|+.+.+|||+|+|++|||||+|.+.++|+||+||+||.|..|.|++++++.|..
T Consensus 280 aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 8999999999999999999999999999999999999999999999999876543
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.2e-35 Score=339.16 Aligned_cols=220 Identities=20% Similarity=0.297 Sum_probs=161.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+|+++||.|+++.++.+.. + ++++..++|+.+...+. ...++|+|+||+++..+++.+...++++++|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~~-~---g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lv 142 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWEK-L---GLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLV 142 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHhh-c---CCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEE
Confidence 799999999999999999988643 2 48999999987654332 2468999999999999988777778999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-------CeEE----EccCC--
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-------PTWV----DLKGE-- 432 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-------p~~i----~~~~~-- 432 (651)
|+||+|.+.+.+++..+..++.+++. +.|++++|||++ +..++++++-.. |..+ .....
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~------~~qiI~lSATl~--n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~ 214 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLG------RAQILGLSATVG--NAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLF 214 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCc------CCcEEEEEccCC--CHHHHHHHhCCccccCCCCCCcceeeEecCCeee
Confidence 99999999988899999999998875 689999999997 456666654211 1111 10000
Q ss_pred ---CCc-----------cC---ceEEEEEEeCcchHHHH-----------------------------------------
Q psy8712 433 ---DAV-----------PE---TVHHVVVKIDPQQDETW----------------------------------------- 454 (651)
Q Consensus 433 ---~~~-----------~~---~i~~~~~~~~~~~~~~~----------------------------------------- 454 (651)
... .+ .-.+.+++|++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 215 WEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred ccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 000 00 11356777776542210
Q ss_pred -------------------HHHhhccccceeeccccccCCCCCCCCCEEEE-------eCCCC-ChhhhhhhcCccccCC
Q psy8712 455 -------------------GRLRSHIQTDGVHARDNARPGIDISGLPFIIN-------MTLPD-DKANYVHRIGRVGRAE 507 (651)
Q Consensus 455 -------------------~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn-------~dlP~-s~~~YihRiGR~GR~g 507 (651)
+..++.....+++||+.+++|+|+|.+++||+ ++.|. +..+|+||+|||||.|
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 00122334566778999999999999999994 66655 5679999999999965
Q ss_pred --CceEEEEeeeCCc
Q psy8712 508 --RMGLAISLVSTVP 520 (651)
Q Consensus 508 --~~G~ai~lv~~~d 520 (651)
..|.+++++.+++
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 6799999987644
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.2e-32 Score=316.15 Aligned_cols=249 Identities=19% Similarity=0.194 Sum_probs=167.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++.+++|+.+..+.. ..+.+ .++|+||||+.+.+ .+.++
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~---i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~ 382 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLG---IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFH 382 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcC---cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhc
Confidence 4799999999999999999999987665 9999999999864433 44444 49999999987743 45688
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC--------
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE-------- 432 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~-------- 432 (651)
+++++||||+|++.. .....+..... +++++++|||..+ ....+......++..+...+.
T Consensus 383 ~l~lvVIDE~Hrfg~-----~qr~~l~~~~~------~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~~i~~~ 450 (681)
T PRK10917 383 NLGLVIIDEQHRFGV-----EQRLALREKGE------NPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRKPITTV 450 (681)
T ss_pred ccceEEEechhhhhH-----HHHHHHHhcCC------CCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCCCcEEE
Confidence 999999999998632 22223333322 4799999999876 443333321112222211111
Q ss_pred ----CCc----------cCceEEEEEEeCcch----------HHHHHHH---------------------------hhcc
Q psy8712 433 ----DAV----------PETVHHVVVKIDPQQ----------DETWGRL---------------------------RSHI 461 (651)
Q Consensus 433 ----~~~----------~~~i~~~~~~~~~~~----------~~~~~~l---------------------------~~~~ 461 (651)
... ...-++.+++|+..+ ......+ +...
T Consensus 451 ~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 530 (681)
T PRK10917 451 VIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG 530 (681)
T ss_pred EeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 000 011235556554211 0111111 3334
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCC-hhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDD-KANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNT 540 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s-~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~ 540 (651)
+.+++++|+.+++|||+|++++||+++.|.. ...|.||+||+||.|..|.|++++.....
T Consensus 531 ~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~------------------- 591 (681)
T PRK10917 531 EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLS------------------- 591 (681)
T ss_pred CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCC-------------------
Confidence 5677888999999999999999999999984 56677799999999999999999863100
Q ss_pred ccccccCCCCcchhhccccccCCcccchhHHHHHHHHHH-HhcCccccccccccCCcccC
Q psy8712 541 QLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEE-HLNVTIQQVDDKLEIPADEF 599 (651)
Q Consensus 541 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~-~~~~~i~~~~~~~~~~~~~~ 599 (651)
.++.+.++.+++ .-+..|++.+..++-+.+.+
T Consensus 592 ---------------------------~~~~~rl~~~~~~~dgf~iae~dl~~rg~g~~~ 624 (681)
T PRK10917 592 ---------------------------ETARERLKIMRETNDGFVIAEKDLELRGPGELL 624 (681)
T ss_pred ---------------------------hhHHHHHHHHHHhcchHHHHHHhHhhCCCcccc
Confidence 035677777776 45677888887776544433
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.1e-31 Score=308.31 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=143.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH---HHHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ---MSVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q---~~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++.+++|+....+. ...+.+ .++||||||+.+.+ .+.++
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~g---i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~ 356 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLG---IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFK 356 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccC---cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----ccccc
Confidence 4799999999999999999999887664 999999999886653 333433 58999999987753 35678
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-c-----------cCCeEEE
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-M-----------YFPTWVD 428 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l-----------~~p~~i~ 428 (651)
+++++||||+|++... .+ ..+....+. ..++|++++|||..+ ....+.... + +.|....
T Consensus 357 ~l~lvVIDEaH~fg~~-qr---~~l~~~~~~----~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r~~i~~~ 427 (630)
T TIGR00643 357 RLALVIIDEQHRFGVE-QR---KKLREKGQG----GFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGRKPITTV 427 (630)
T ss_pred ccceEEEechhhccHH-HH---HHHHHhccc----CCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCCCceEEE
Confidence 9999999999985321 11 222222221 014799999999766 333322211 0 1122111
Q ss_pred ccCCCCc----------cCceEEEEEEeCcch----------HHHHHHH---------------------------hhcc
Q psy8712 429 LKGEDAV----------PETVHHVVVKIDPQQ----------DETWGRL---------------------------RSHI 461 (651)
Q Consensus 429 ~~~~~~~----------~~~i~~~~~~~~~~~----------~~~~~~l---------------------------~~~~ 461 (651)
+...+.. ...-.+.+++|+..+ ...+..+ +...
T Consensus 428 ~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 507 (630)
T TIGR00643 428 LIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG 507 (630)
T ss_pred EeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 1111100 011234444443211 0111111 3334
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeee
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVS 517 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~ 517 (651)
+.+++++|+.+++|||+|++++||+++.|. ....|.||+||+||.|+.|.|++++.
T Consensus 508 ~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 508 EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 567788899999999999999999999997 56677779999999999999999984
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.4e-32 Score=323.76 Aligned_cols=213 Identities=18% Similarity=0.188 Sum_probs=152.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc-----HHHHHHHhcc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN-----VKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~-----~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
+++|||+|||+||.|+++.++.++.... +.+..++|+.+ ...+...+.+ .+||+|+||++|.+++. .+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~---~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~ 198 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVG---CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELP 198 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcC---ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hcc
Confidence 4799999999999999999999998665 77777777654 2333444554 59999999999999876 456
Q ss_pred cCCcceEeeccchhhhh-----------ccch-HHHHHHHhcCCCccC------------------CCCceeEEEEeecc
Q psy8712 359 LTHCRFFVLDEADGLLK-----------QGYG-NLIDRMHKQIPKITS------------------DGKRLQMIVCSATL 408 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~-----------~gf~-~~i~~il~~lp~~~~------------------~~~~~Q~l~~SATl 408 (651)
..++++|||||||+|++ .||. +++..++..++.... .....|+++||||+
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~ 278 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATG 278 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCC
Confidence 67799999999999996 6785 678888877764100 01157999999999
Q ss_pred ChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE----------------------eCcchH-----HHHHHH----
Q psy8712 409 HDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK----------------------IDPQQD-----ETWGRL---- 457 (651)
Q Consensus 409 ~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~----------------------~~~~~~-----~~~~~l---- 457 (651)
++..+.. .+++++..+.+........+|.|.++. |+.... .....+
T Consensus 279 ~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~g 355 (1176)
T PRK09401 279 RPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLG 355 (1176)
T ss_pred CccchHH---HHhhccceEEecCcccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCC
Confidence 8632332 233444445555444444555554444 333211 111111
Q ss_pred ----------------hhccccceeec----cccccCCCCCCC-CCEEEEeCCCC------ChhhhhhhcCcccc
Q psy8712 458 ----------------RSHIQTDGVHA----RDNARPGIDISG-LPFIINMTLPD------DKANYVHRIGRVGR 505 (651)
Q Consensus 458 ----------------~~~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP~------s~~~YihRiGR~GR 505 (651)
+...+.+++++ ||.++||||+|+ |++|||||+|. ..+.|.||+||+-+
T Consensus 356 i~v~~~hg~l~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 356 INAELAISGFERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CcEEEEeCcHHHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 33445667778 689999999999 89999999998 77899999999963
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-32 Score=315.95 Aligned_cols=222 Identities=16% Similarity=0.246 Sum_probs=154.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+|+++||.|+++.++++.. + ++++...+|+....... .+.+||+|+||+++..++.+....++++++|
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~~-~---g~~v~~~~G~~~~~~~~---~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lv 139 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLRS-L---GMRVKISIGDYDDPPDF---IKRYDVVILTSEKADSLIHHDPYIINDVGLI 139 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHhh-c---CCeEEEEeCCCCCChhh---hccCCEEEECHHHHHHHHhCChhHHhhcCEE
Confidence 689999999999999999988643 2 47888888876643321 2468999999999999888777678999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc---------CCeEEEccC-----
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY---------FPTWVDLKG----- 431 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~---------~p~~i~~~~----- 431 (651)
||||||++.+.++++.++.++..+.... .+.|++++|||++ +..++++++-. .|..+.+..
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~---~~~riI~lSATl~--n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~ 214 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVN---PDARILALSATVS--NANELAQWLNASLIKSNFRPVPLKLGILYRKRLI 214 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcC---cCCcEEEEeCccC--CHHHHHHHhCCCccCCCCCCCCeEEEEEecCeee
Confidence 9999999998888888887776554321 1589999999997 45667665421 121111110
Q ss_pred ---CCCc-----------cCceEEEEEEeCcchHHH--------------------------------------------
Q psy8712 432 ---EDAV-----------PETVHHVVVKIDPQQDET-------------------------------------------- 453 (651)
Q Consensus 432 ---~~~~-----------~~~i~~~~~~~~~~~~~~-------------------------------------------- 453 (651)
.... ...-.+.+++|++++...
T Consensus 215 ~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 215 LDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred ecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 0000 011235677777654211
Q ss_pred --------HHHHhhccccceeeccccccCCCCCCCCCEEEEeCC---------CCChhhhhhhcCccccCCC--ceEEEE
Q psy8712 454 --------WGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTL---------PDDKANYVHRIGRVGRAER--MGLAIS 514 (651)
Q Consensus 454 --------~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl---------P~s~~~YihRiGR~GR~g~--~G~ai~ 514 (651)
....++.....++.+|+.+++|+|+|+. .||++|. |-+..+|.||+|||||.|. .|.+++
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i 373 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYI 373 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEE
Confidence 0111233455677889999999999985 5555554 4578899999999999984 677888
Q ss_pred eeeCCc
Q psy8712 515 LVSTVP 520 (651)
Q Consensus 515 lv~~~d 520 (651)
++...+
T Consensus 374 ~~~~~~ 379 (674)
T PRK01172 374 YAASPA 379 (674)
T ss_pred EecCcc
Confidence 876544
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.98 E-value=1.2e-31 Score=305.08 Aligned_cols=228 Identities=19% Similarity=0.264 Sum_probs=171.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc--ccC
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL--SLT 360 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l--~l~ 360 (651)
++..+|+|+|.|+|.+.+...++..+..++ +.+.+-.|+++..+..+.+++.|||||+|||.|.-++....+ .|+
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G---~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~ 148 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELG---IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLR 148 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcC---CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhc
Confidence 356899999999999999999999999876 888999999999999999999999999999999888877655 489
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC--CeEEEccCCCCcc--
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF--PTWVDLKGEDAVP-- 436 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~--p~~i~~~~~~~~~-- 436 (651)
+++++||||.|.+.+...+.++.--+.+|..... +.|.|++|||.. +....++.+... +..|.........
T Consensus 149 ~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~---~~qRIGLSATV~--~~~~varfL~g~~~~~~Iv~~~~~k~~~i 223 (814)
T COG1201 149 DVRYVIVDEIHALAESKRGVQLALSLERLRELAG---DFQRIGLSATVG--PPEEVAKFLVGFGDPCEIVDVSAAKKLEI 223 (814)
T ss_pred CCcEEEeehhhhhhccccchhhhhhHHHHHhhCc---ccEEEeehhccC--CHHHHHHHhcCCCCceEEEEcccCCcceE
Confidence 9999999999999987777776666666554322 589999999997 456666665543 3222211111000
Q ss_pred ------------------------C---ceEEEEEEeCcchHH--HHHHH--------------------------hhcc
Q psy8712 437 ------------------------E---TVHHVVVKIDPQQDE--TWGRL--------------------------RSHI 461 (651)
Q Consensus 437 ------------------------~---~i~~~~~~~~~~~~~--~~~~l--------------------------~~~~ 461 (651)
+ .-.-.++|++++... ....+ ++..
T Consensus 224 ~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G 303 (814)
T COG1201 224 KVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG 303 (814)
T ss_pred EEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC
Confidence 0 001245666665421 11111 3334
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC-CCceEEEEeeeC
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA-ERMGLAISLVST 518 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~~ 518 (651)
...+++||..+..|||+.+|+.||+|.-|.++..++||+||+|+. +....++.+...
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 467788899999999999999999999999999999999999964 555677766665
No 54
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=4.1e-31 Score=322.95 Aligned_cols=227 Identities=17% Similarity=0.126 Sum_probs=157.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH---Hhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS---VLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~---~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+||++||.|+.+.++.++..+. .++++..++|+.+..++.. .+.+ .+||||+||++|.+.+... ...
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~-~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~ 199 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKAN-LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHL 199 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcC-CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhC
Confidence 4799999999999999999999987652 2478888999998776643 3444 4999999999998876542 227
Q ss_pred CcceEeeccchhhhh-----------ccchHHHHH----HHhcCCC---------------cc-CCCCcee-EEEEeecc
Q psy8712 361 HCRFFVLDEADGLLK-----------QGYGNLIDR----MHKQIPK---------------IT-SDGKRLQ-MIVCSATL 408 (651)
Q Consensus 361 ~l~~lViDEaD~ll~-----------~gf~~~i~~----il~~lp~---------------~~-~~~~~~Q-~l~~SATl 408 (651)
++++|||||||+|++ +||.+++.. +++..+. .. .-....| ++++|||+
T Consensus 200 ~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~ 279 (1638)
T PRK14701 200 KFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATG 279 (1638)
T ss_pred CCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCC
Confidence 899999999999986 488888864 4321000 00 0011344 67899999
Q ss_pred ChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC-----------------------cch-----HHHHHHH---
Q psy8712 409 HDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID-----------------------PQQ-----DETWGRL--- 457 (651)
Q Consensus 409 ~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~-----------------------~~~-----~~~~~~l--- 457 (651)
++. .....+++++..+.+........++.|.++.++ .++ +.....|
T Consensus 280 ~~r---~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~ 356 (1638)
T PRK14701 280 KAK---GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLED 356 (1638)
T ss_pred Cch---hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHC
Confidence 852 112234466666776666555566666554433 222 1112222
Q ss_pred -----------------hhccccceeecc----ccccCCCCCCC-CCEEEEeCCCC---Chhhhhhhc------------
Q psy8712 458 -----------------RSHIQTDGVHAR----DNARPGIDISG-LPFIINMTLPD---DKANYVHRI------------ 500 (651)
Q Consensus 458 -----------------~~~~~~~~l~~t----d~~~rGIDip~-v~~VIn~dlP~---s~~~YihRi------------ 500 (651)
+...+.+++++| +.++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 357 Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~ 436 (1638)
T PRK14701 357 GFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILK 436 (1638)
T ss_pred CCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHH
Confidence 233455667778 47889999999 99999999999 999888877
Q ss_pred -CccccCCCceEEEEeee
Q psy8712 501 -GRVGRAERMGLAISLVS 517 (651)
Q Consensus 501 -GR~GR~g~~G~ai~lv~ 517 (651)
||+||.|..+.++..+.
T Consensus 437 ~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 437 IEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred hhhhcccCCcchhHHHhH
Confidence 99999988777764433
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=7.7e-31 Score=298.41 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=156.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
.++++|++||||||.|+.+.+.....+..-.++.+.+.+||.+. .+.....+..+|+|+|++.. ...+++++
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~ 293 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYG 293 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCC
Confidence 34899999999999999999987766543335778889999873 32233334789999997521 12478999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE---
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--- 440 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~--- 440 (651)
+|||||||.+...+ +.+..+++.++.. .+|+++||||++. ++..+ ..++.+|..+.+.+.. ...|+
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~-----~rq~ILmSATl~~-dv~~l-~~~~~~p~~I~I~grt--~~pV~~~y 362 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDK-----IRSLFLMTATLED-DRDRI-KEFFPNPAFVHIPGGT--LFPISEVY 362 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhh-----cCEEEEEccCCcH-hHHHH-HHHhcCCcEEEeCCCc--CCCeEEEE
Confidence 99999999987764 4566666554431 3599999999986 77777 5788888877765431 11122
Q ss_pred ----------------------------------EEEEEeCcchHH--H--------------------------HHHHh
Q psy8712 441 ----------------------------------HVVVKIDPQQDE--T--------------------------WGRLR 458 (651)
Q Consensus 441 ----------------------------------~~~~~~~~~~~~--~--------------------------~~~l~ 458 (651)
+.++|++...+. . ...++
T Consensus 363 i~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff 442 (675)
T PHA02653 363 VKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVY 442 (675)
T ss_pred eecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHh
Confidence 345555543210 0 01111
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeC---CCC---------ChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMT---LPD---------DKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~d---lP~---------s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+..+..++.+||.++||||||+|++||++| .|. |.++|+||+|||||. +.|.|+.|++++
T Consensus 443 ~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 443 SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred ccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 233457788999999999999999999999 675 888999999999999 899999999874
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.8e-30 Score=286.13 Aligned_cols=227 Identities=17% Similarity=0.181 Sum_probs=159.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hcc-CCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSS-GVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~-~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
-+|||+|...|+..+.+.++..+ +++.++.+..+.++.... +.. ..++|.-+||++..-.....+.--.
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~~G-------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~ 131 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEAAG-------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLP 131 (590)
T ss_pred CEEEECchHHHHHHHHHHHHHcC-------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCC
Confidence 47999999999999999988776 788888888665555433 333 4899999999996533223333567
Q ss_pred cceEeeccchhhhhcc--chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc-CCeEEEcc--CCCC--
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY-FPTWVDLK--GEDA-- 434 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-~p~~i~~~--~~~~-- 434 (651)
+.++|||||||+++|| |+++..++-....... +++++++|||.++....++.+.+.- ++..+... +.+.
T Consensus 132 i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~----~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~ 207 (590)
T COG0514 132 ISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP----NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLAL 207 (590)
T ss_pred CceEEechHHHHhhcCCccCHhHHHHHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhh
Confidence 8899999999999997 9998776644332211 4799999999998545555555432 33222111 1110
Q ss_pred --------------c----cCceEEEEEEeCcch---------------------------HHHHHHHhhccccceeecc
Q psy8712 435 --------------V----PETVHHVVVKIDPQQ---------------------------DETWGRLRSHIQTDGVHAR 469 (651)
Q Consensus 435 --------------~----~~~i~~~~~~~~~~~---------------------------~~~~~~l~~~~~~~~l~~t 469 (651)
. ...-.--+++|.+++ ++.....+..-+..+++||
T Consensus 208 ~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT 287 (590)
T COG0514 208 KVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT 287 (590)
T ss_pred hhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 0 000000234444433 1122222444566778889
Q ss_pred ccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
..+..|||.|||++|||||+|.|.++|+|.+|||||+|....|++|+++.|...
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~ 341 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRW 341 (590)
T ss_pred ccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHH
Confidence 999999999999999999999999999999999999999999999999977553
No 57
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=6.7e-30 Score=253.07 Aligned_cols=202 Identities=38% Similarity=0.656 Sum_probs=182.3
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccc
Q psy8712 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQ 83 (651)
Q Consensus 4 f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~ 83 (651)
|+++++++.+.+.|.++|+..|+++|+++++.++.|+|++++||||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---------------
Confidence 88999999999999999999999999999999999999999999999999999999999776510
Q ss_pred cccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCCC
Q psy8712 84 VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRFG 163 (651)
Q Consensus 84 ~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 163 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (203)
T cd00268 66 -------------------------------------------------------------------------------- 65 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccCC
Q psy8712 164 FGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGA 243 (651)
Q Consensus 164 ~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~ 243 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (203)
T cd00268 66 -------------------------------------------------------------------------------- 65 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeC
Q psy8712 244 TPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIG 323 (651)
Q Consensus 244 ~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~G 323 (651)
..+++++||++||++|+.|+.+.++.+....+ +++..+.|
T Consensus 66 -------------------------------------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~---~~~~~~~~ 105 (203)
T cd00268 66 -------------------------------------KKDGPQALILAPTRELALQIAEVARKLGKHTN---LKVVVIYG 105 (203)
T ss_pred -------------------------------------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCC---ceEEEEEC
Confidence 01346899999999999999999999886543 88899999
Q ss_pred CccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 324 GVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 324 g~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
+.+.......+..+++|+|+||+++.+++.++...+++++++|+||+|.+.+.++...+..+++.++. ..|+++
T Consensus 106 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~------~~~~~~ 179 (203)
T cd00268 106 GTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK------DRQTLL 179 (203)
T ss_pred CCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc------ccEEEE
Confidence 99887777777778999999999999999988888999999999999999988899999999998876 689999
Q ss_pred EeeccChHHHHHHHHHhccCCeEE
Q psy8712 404 CSATLHDFDVKKMAERLMYFPTWV 427 (651)
Q Consensus 404 ~SATl~~~~v~~l~~~~l~~p~~i 427 (651)
+|||+++ .+.++...++.+|..|
T Consensus 180 ~SAT~~~-~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 180 FSATMPK-EVRDLARKFLRNPVRI 202 (203)
T ss_pred EeccCCH-HHHHHHHHHCCCCEEe
Confidence 9999997 9999999999988765
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=4.3e-30 Score=309.02 Aligned_cols=226 Identities=18% Similarity=0.200 Sum_probs=157.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhcc-------C--CCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKF-------I--TDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG 354 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~-------~--~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~ 354 (651)
++++|||+|||+|+.|+++.++..... + ..+++++...+|+.+..++.+.+++.+||||+||++|..++.+
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts 116 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS 116 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh
Confidence 468999999999999999988752211 1 1235999999999999998888888999999999999998765
Q ss_pred CC-cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc-CCeEEE----
Q psy8712 355 GH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY-FPTWVD---- 428 (651)
Q Consensus 355 ~~-l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-~p~~i~---- 428 (651)
+. ..++++++|||||+|.|++..++.++..++.++....+ .+.|+|++|||+++ ..++++.+.. +|..|.
T Consensus 117 k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--~~~QrIgLSATI~n--~eevA~~L~g~~pv~Iv~~~~ 192 (1490)
T PRK09751 117 RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--TSAQRIGLSATVRS--ASDVAAFLGGDRPVTVVNPPA 192 (1490)
T ss_pred hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--CCCeEEEEEeeCCC--HHHHHHHhcCCCCEEEECCCC
Confidence 43 46899999999999999976555544444333322111 16899999999984 5666665532 233221
Q ss_pred ---------ccCCC--Cc---------------c---------------CceEEEEEEeCcchHHH--HHHH--------
Q psy8712 429 ---------LKGED--AV---------------P---------------ETVHHVVVKIDPQQDET--WGRL-------- 457 (651)
Q Consensus 429 ---------~~~~~--~~---------------~---------------~~i~~~~~~~~~~~~~~--~~~l-------- 457 (651)
+...+ .. . ..-.+.++||+++.... ...+
T Consensus 193 ~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~ 272 (1490)
T PRK09751 193 MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARL 272 (1490)
T ss_pred CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhc
Confidence 11000 00 0 01134577777764211 1111
Q ss_pred --------------------------------------------------hhccccceeeccccccCCCCCCCCCEEEEe
Q psy8712 458 --------------------------------------------------RSHIQTDGVHARDNARPGIDISGLPFIINM 487 (651)
Q Consensus 458 --------------------------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~ 487 (651)
++.....++++|+.+.+||||++|++||||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~ 352 (1490)
T PRK09751 273 QRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQV 352 (1490)
T ss_pred cccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEe
Confidence 122234556678999999999999999999
Q ss_pred CCCCChhhhhhhcCccccC-CCceEEE
Q psy8712 488 TLPDDKANYVHRIGRVGRA-ERMGLAI 513 (651)
Q Consensus 488 dlP~s~~~YihRiGR~GR~-g~~G~ai 513 (651)
+.|.++.+|+||+||+||. |..+.++
T Consensus 353 gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 353 ATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999997 3334445
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.9e-28 Score=275.07 Aligned_cols=231 Identities=17% Similarity=0.138 Sum_probs=156.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC-------
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------- 356 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------- 356 (651)
++++||+||++||.|.++++..+..+++ +++.+++||.+.. .+.+..++||+|||...+ .|+++.+.
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~lG---lsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~ 219 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEALG---LTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRAS 219 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhcC---CEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcccccccccccc
Confidence 4799999999999999999999998886 9999999998754 333445799999999998 56665432
Q ss_pred ------------------cccCCcceEeeccchhhh-hc-----------------cchHHHHHHHhcCCC---------
Q psy8712 357 ------------------LSLTHCRFFVLDEADGLL-KQ-----------------GYGNLIDRMHKQIPK--------- 391 (651)
Q Consensus 357 ------------------l~l~~l~~lViDEaD~ll-~~-----------------gf~~~i~~il~~lp~--------- 391 (651)
.....+.+.||||+|.++ |. .+...+..+.+.+..
T Consensus 220 ~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~ 299 (656)
T PRK12898 220 DARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAA 299 (656)
T ss_pred chhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECC
Confidence 123567899999999764 10 011111111111110
Q ss_pred ------------------------ccC---------------------------CC------------------------
Q psy8712 392 ------------------------ITS---------------------------DG------------------------ 396 (651)
Q Consensus 392 ------------------------~~~---------------------------~~------------------------ 396 (651)
+.. ++
T Consensus 300 ~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQ 379 (656)
T PRK12898 300 EKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQ 379 (656)
T ss_pred CCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHH
Confidence 000 00
Q ss_pred -----------Cc----------------eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE---------
Q psy8712 397 -----------KR----------------LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--------- 440 (651)
Q Consensus 397 -----------~~----------------~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~--------- 440 (651)
.. ..+.+||||++. ...++.+.+..++..|....... ....
T Consensus 380 aieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~-~~~El~~~y~l~vv~IPt~kp~~--r~~~~~~v~~t~~ 456 (656)
T PRK12898 380 MIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTARE-VAGELWSVYGLPVVRIPTNRPSQ--RRHLPDEVFLTAA 456 (656)
T ss_pred HHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChH-HHHHHHHHHCCCeEEeCCCCCcc--ceecCCEEEeCHH
Confidence 00 135668888886 67788887777766655443321 1111
Q ss_pred ------------------EEEEEeCcchHHH--HHHH-----------------------hhccccceeeccccccCCCC
Q psy8712 441 ------------------HVVVKIDPQQDET--WGRL-----------------------RSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 441 ------------------~~~~~~~~~~~~~--~~~l-----------------------~~~~~~~~l~~td~~~rGID 477 (651)
..++++++.+... ...| +.+.+..++++||.+.||+|
T Consensus 457 ~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtD 536 (656)
T PRK12898 457 AKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTD 536 (656)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccC
Confidence 2344444433211 1111 22233456778999999999
Q ss_pred CC---CCC-----EEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 478 IS---GLP-----FIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 478 ip---~v~-----~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
|+ +|. +|||||+|.+...|+||+|||||.|+.|.+++|++.+|+..
T Consensus 537 I~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 537 IKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99 676 99999999999999999999999999999999999866543
No 60
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=4.6e-28 Score=291.07 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=130.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+|||+||.|+++.++.+....+-....+.+++||.+..++. ..+.+ +++|||+||++|.+.+.. +..
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~- 198 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP- 198 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-
Confidence 47999999999999999999999876541112234567888876553 33444 599999999999887764 222
Q ss_pred CcceEeeccchhhhh-----------ccchHH-HHHHHhc----------------------CCCccCCCCceeEEEEee
Q psy8712 361 HCRFFVLDEADGLLK-----------QGYGNL-IDRMHKQ----------------------IPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 361 ~l~~lViDEaD~ll~-----------~gf~~~-i~~il~~----------------------lp~~~~~~~~~Q~l~~SA 406 (651)
+++++||||||+|++ +||.++ +..++.. +|. ....++++|||
T Consensus 199 ~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~q~~li~~SA 274 (1171)
T TIGR01054 199 KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG----KKRGCLIVSSA 274 (1171)
T ss_pred CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh----ccCcEEEEEeC
Confidence 899999999999998 688774 5555432 222 11234678999
Q ss_pred ccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE----------------------eCcc---h--HHHHHHH--
Q psy8712 407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK----------------------IDPQ---Q--DETWGRL-- 457 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~----------------------~~~~---~--~~~~~~l-- 457 (651)
|..+..+. ..+++++..+.+........+|.|.++. |+.. + ++....+
T Consensus 275 T~~p~~~~---~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~ 351 (1171)
T TIGR01054 275 TGRPRGKR---AKLFRELLGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLEN 351 (1171)
T ss_pred CCCccccH---HHHcccccceEecCccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHh
Confidence 94332333 2344555555555555455555554443 3332 1 1111111
Q ss_pred -------------------hhccccceeec----cccccCCCCCCC-CCEEEEeCCCC
Q psy8712 458 -------------------RSHIQTDGVHA----RDNARPGIDISG-LPFIINMTLPD 491 (651)
Q Consensus 458 -------------------~~~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP~ 491 (651)
++..+.+++++ ||.++||||+|+ |++|||||+|.
T Consensus 352 ~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 352 HGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 23334556667 589999999999 89999999996
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=275.33 Aligned_cols=236 Identities=20% Similarity=0.296 Sum_probs=167.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC----cccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH----LSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~----l~l~~ 361 (651)
+||+|.||++||+.+.+.++++...++. ++++....|.....+......+.||||+++|.+|..++.... ..+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~-~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPG-KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCC-cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 7899999999999999999999887764 588888888888887778888999999999999988554432 24688
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce-
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV- 439 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i- 439 (651)
+++||+||+|..-. .|+.++..++++|... +..+.++|+|+.|||+. +...+++.+...+....+... ..+...
T Consensus 196 Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~--np~e~~~~l~~~~f~~~v~~~-g~~~~~~ 271 (851)
T COG1205 196 LKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLA--NPGEFAEELFGRDFEVPVDED-GSPRGLR 271 (851)
T ss_pred CcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEecccc--ChHHHHHHhcCCcceeeccCC-CCCCCce
Confidence 99999999997643 3666665555554322 11234689999999997 566777777654433322211 111111
Q ss_pred -----------------------------------EEEEEEeCcchHHHH------------------------------
Q psy8712 440 -----------------------------------HHVVVKIDPQQDETW------------------------------ 454 (651)
Q Consensus 440 -----------------------------------~~~~~~~~~~~~~~~------------------------------ 454 (651)
.+.+++++.+.....
T Consensus 272 ~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 272 YFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHRE 351 (851)
T ss_pred EEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHH
Confidence 123444433321111
Q ss_pred -----HHHhhccccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCccccccc
Q psy8712 455 -----GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 455 -----~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~ 526 (651)
+...+.-+..++.+|+.+.-||||.++..||++..|. +..+|.||.||+||.++.+..+.+...+.-..||.
T Consensus 352 er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~ 429 (851)
T COG1205 352 ERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYL 429 (851)
T ss_pred HHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhh
Confidence 1112233445566677778899999999999999999 89999999999999998888888888655555554
No 62
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=8.8e-27 Score=268.81 Aligned_cols=337 Identities=19% Similarity=0.223 Sum_probs=264.8
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCC------------CCCCCCCCeEEEecCCCCceeeeeccccccCCc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATP------------FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPV 278 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~------------~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~ 278 (651)
-|++|..+.-|+.+ .+.+|.|..|| |..+.|||+++|+++|.|||.++++|+ +
T Consensus 573 ~G~af~~d~~~q~~----------F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAA-----F 637 (1139)
T COG1197 573 KGFAFPPDTEWQEE----------FEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAA-----F 637 (1139)
T ss_pred cCCCCCCChHHHHH----------HHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHH-----H
Confidence 59999999999876 78999999998 999999999999999999999999998 5
Q ss_pred cccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhC
Q psy8712 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISG 354 (651)
Q Consensus 279 ~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~ 354 (651)
++..+++|+.|||||.-||+|+++.|+.-.+.++ +++..+..-.+.+++...+++ .+|||||| +-+-+
T Consensus 638 kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP---V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~ 709 (1139)
T COG1197 638 KAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFP---VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLS 709 (1139)
T ss_pred HHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCC---eeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhC
Confidence 5667789999999999999999999998888777 999999988888887766543 58999999 44556
Q ss_pred CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCC
Q psy8712 355 GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA 434 (651)
Q Consensus 355 ~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~ 434 (651)
+.+.++++.+|||||-|+ |+-.-++-++.+.. +.-++.+|||.-| ....++-.-+++...|...+.+.
T Consensus 710 kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~------~VDvLTLSATPIP-RTL~Msm~GiRdlSvI~TPP~~R 777 (1139)
T COG1197 710 KDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRA------NVDVLTLSATPIP-RTLNMSLSGIRDLSVIATPPEDR 777 (1139)
T ss_pred CCcEEecCCeEEEechhh-----cCccHHHHHHHHhc------cCcEEEeeCCCCc-chHHHHHhcchhhhhccCCCCCC
Confidence 788899999999999775 55555666677766 6899999999887 77788877777766666665554
Q ss_pred ccCc----------e-----------EEEEEEeCcch-----HHHHHHH------------------------hhccccc
Q psy8712 435 VPET----------V-----------HHVVVKIDPQQ-----DETWGRL------------------------RSHIQTD 464 (651)
Q Consensus 435 ~~~~----------i-----------~~~~~~~~~~~-----~~~~~~l------------------------~~~~~~~ 464 (651)
.+-. | -|+|+..+.-+ .+.+..+ +.....+
T Consensus 778 ~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 778 LPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred cceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 3210 0 12333333221 1111111 4455778
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLT 543 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~ 543 (651)
+++||.....|||||+++.+|..+.-. -....+|--||+||..+.|+||.++.+.
T Consensus 858 VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~------------------------ 913 (1139)
T COG1197 858 VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ------------------------ 913 (1139)
T ss_pred EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc------------------------
Confidence 899999999999999999999766543 3457888889999999999999999863
Q ss_pred cccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhc----CccccccccccCCcccCCCceeecceecccC--ccch
Q psy8712 544 DVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLN----VTIQQVDDKLEIPADEFDGKVVYGQKRVNMG--SSYE 617 (651)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~----~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~ 617 (651)
..+.-+-.++|+.|+++.. ..++.-+.+++ +++...|.++++.+ ..|+
T Consensus 914 --------------------k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIR------GaGNlLG~eQSG~I~~VGf~ 967 (1139)
T COG1197 914 --------------------KALTEDAEKRLEAIASFTELGAGFKLAMHDLEIR------GAGNLLGEEQSGHIESVGFD 967 (1139)
T ss_pred --------------------cccCHHHHHHHHHHHhhhhcCchHHHHhcchhcc------ccccccCccccCchheecHH
Confidence 1112245778888887433 66776676666 88899999999875 8899
Q ss_pred hhHhhhhHHHHHHHH
Q psy8712 618 NHVTQMEPSVNKLSK 632 (651)
Q Consensus 618 ~~~~~~~~~~~el~~ 632 (651)
-+.+.|+++|.+|..
T Consensus 968 LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 968 LYMEMLEEAIAALKG 982 (1139)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999988
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=1.2e-26 Score=269.98 Aligned_cols=214 Identities=21% Similarity=0.265 Sum_probs=147.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|+.|||++|.|+++.+.. ++... +..+...+++.. ......+|+|+|||+|++++.+ ...++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~---g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~ 116 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAV---GQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGA 116 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCc---CcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCE
Confidence 699999999999999998853 43332 245555555443 2344689999999999998876 457899999
Q ss_pred Eeeccch-hhhhccchH-HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc------
Q psy8712 365 FVLDEAD-GLLKQGYGN-LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP------ 436 (651)
Q Consensus 365 lViDEaD-~ll~~gf~~-~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~------ 436 (651)
|||||+| ++++.++.- .+..+...++. +.|+|+||||++. .. + ..++.++..|.+.+.....
T Consensus 117 VIiDEaHER~L~~Dl~L~ll~~i~~~lr~------dlqlIlmSATl~~-~~--l-~~~l~~~~vI~~~gr~~pVe~~y~~ 186 (819)
T TIGR01970 117 LIFDEFHERSLDADLGLALALDVQSSLRE------DLKILAMSATLDG-ER--L-SSLLPDAPVVESEGRSFPVEIRYLP 186 (819)
T ss_pred EEEeccchhhhccchHHHHHHHHHHhcCC------CceEEEEeCCCCH-HH--H-HHHcCCCcEEEecCcceeeeeEEee
Confidence 9999999 577765543 23455555655 6899999999986 32 2 4556554444443321100
Q ss_pred --------------------CceEEEEEEeCcchH--HHHHHHh----------------------------hcccccee
Q psy8712 437 --------------------ETVHHVVVKIDPQQD--ETWGRLR----------------------------SHIQTDGV 466 (651)
Q Consensus 437 --------------------~~i~~~~~~~~~~~~--~~~~~l~----------------------------~~~~~~~l 466 (651)
..-.+.++|++...+ .....+. ......++
T Consensus 187 ~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVl 266 (819)
T TIGR01970 187 LRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVV 266 (819)
T ss_pred cchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEE
Confidence 001235566654332 1111111 11234567
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCC------------------hhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDD------------------KANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s------------------~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
.+||.+++|||||+|++|||+++|+. ..+|+||+|||||. +.|.||.|+++++
T Consensus 267 VATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 267 LATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred EecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 78999999999999999999999863 34699999999999 8999999998753
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.4e-26 Score=265.06 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=70.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------c
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------L 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l 357 (651)
++++|++||++||.|.++.+..+..+++ +++.++.||.+...+.+.. .++||++|||+++ .|+++... .
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~lG---l~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~ 195 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFLG---LTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDK 195 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhh
Confidence 4689999999999999999999999886 9999999999843333333 4599999999999 56665432 3
Q ss_pred ccCCcceEeeccchhhh
Q psy8712 358 SLTHCRFFVLDEADGLL 374 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll 374 (651)
.++.+.++||||||.|+
T Consensus 196 ~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 196 VQRPLNYAIIDEIDSIL 212 (790)
T ss_pred cccccceEEEeccccce
Confidence 56889999999999876
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=1.8e-26 Score=269.09 Aligned_cols=214 Identities=18% Similarity=0.249 Sum_probs=146.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|++|||++|.|+++.+.. ++... +..+...+++.+.. ....+|+|+|||+|++++.+ ...++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~---g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~ 119 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKP---GETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGL 119 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCccc---CceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcE
Confidence 699999999999999998854 44433 36677777765432 23568999999999998876 457899999
Q ss_pred Eeeccchh-hhhccc-hHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc------
Q psy8712 365 FVLDEADG-LLKQGY-GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP------ 436 (651)
Q Consensus 365 lViDEaD~-ll~~gf-~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~------ 436 (651)
|||||+|. .++..+ ...+..+++.++. +.|+++||||++. . .+ ..++.++..|.+.+.....
T Consensus 120 IIlDEaHER~l~~Dl~L~ll~~i~~~lr~------~lqlilmSATl~~-~--~l-~~~~~~~~~I~~~gr~~pV~~~y~~ 189 (812)
T PRK11664 120 VILDEFHERSLQADLALALLLDVQQGLRD------DLKLLIMSATLDN-D--RL-QQLLPDAPVIVSEGRSFPVERRYQP 189 (812)
T ss_pred EEEcCCCccccccchHHHHHHHHHHhCCc------cceEEEEecCCCH-H--HH-HHhcCCCCEEEecCccccceEEecc
Confidence 99999996 444332 2234455566655 6899999999985 2 23 4556555444443321100
Q ss_pred --------------------CceEEEEEEeCcchH--HHHHHH----------------------------hhcccccee
Q psy8712 437 --------------------ETVHHVVVKIDPQQD--ETWGRL----------------------------RSHIQTDGV 466 (651)
Q Consensus 437 --------------------~~i~~~~~~~~~~~~--~~~~~l----------------------------~~~~~~~~l 466 (651)
..-...++|++...+ .....+ ....+..++
T Consensus 190 ~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVl 269 (812)
T PRK11664 190 LPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVV 269 (812)
T ss_pred CchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEE
Confidence 001234555544321 111111 111234567
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCC------------------hhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDD------------------KANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s------------------~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
.+||.+++|||||+|++|||+++|+. ..+|+||+|||||. ..|.||.|+++++
T Consensus 270 vATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 270 LATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred EecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 78999999999999999999888753 35899999999999 7999999999754
No 66
>KOG0351|consensus
Probab=99.93 E-value=2.4e-25 Score=258.54 Aligned_cols=222 Identities=17% Similarity=0.204 Sum_probs=152.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hcc---CCcEEEECchhhHH--HHhCCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSS---GVDIVVGTPGRMED--LISGGHL 357 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~---~~dIlV~TP~rL~~--ll~~~~l 357 (651)
..|||.|...|++.+...+... +|....+.++....++... +.+ .++|+.-|||++.. .+.....
T Consensus 306 itvVISPL~SLm~DQv~~L~~~-------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~ 378 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKK-------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA 378 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhc-------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH
Confidence 4789999999998666555322 3888888888887655433 333 47999999999864 2222233
Q ss_pred ccCC---cceEeeccchhhhhcc--chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEccC
Q psy8712 358 SLTH---CRFFVLDEADGLLKQG--YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDLKG 431 (651)
Q Consensus 358 ~l~~---l~~lViDEaD~ll~~g--f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~~~ 431 (651)
.+.. +.++|||||||..+|| |+++.+++.....+. ....+|.+|||.+...-.++++.+ +++|..+.
T Consensus 379 ~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~----~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--- 451 (941)
T KOG0351|consen 379 DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRF----PGVPFIALTATATERVREDVIRSLGLRNPELFK--- 451 (941)
T ss_pred hccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhC----CCCCeEEeehhccHHHHHHHHHHhCCCCcceec---
Confidence 4444 8999999999999996 888877765443332 137999999999874444555443 33443221
Q ss_pred CCCccCceEE--------------------------EEEEeCcchH--HHHHHH-------------------------h
Q psy8712 432 EDAVPETVHH--------------------------VVVKIDPQQD--ETWGRL-------------------------R 458 (651)
Q Consensus 432 ~~~~~~~i~~--------------------------~~~~~~~~~~--~~~~~l-------------------------~ 458 (651)
....++++.. .+++|..+.. ..-..+ .
T Consensus 452 ~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w 531 (941)
T KOG0351|consen 452 SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW 531 (941)
T ss_pred ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH
Confidence 1122222221 2344443321 111111 1
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
-..+..++++|-.+..|||.|||++||||.+|.+.+.|+|.+|||||+|....|++|+...|-
T Consensus 532 ~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 532 MSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred hcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 223456677888889999999999999999999999999999999999999999999998753
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=2.8e-25 Score=249.21 Aligned_cols=209 Identities=16% Similarity=0.132 Sum_probs=131.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++++.... ...+..+.+|.... ...+|+|+||+++.+... ..++++++|
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~---~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~i 226 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFP---REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMV 226 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccc---ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEE
Confidence 79999999999999999999887432 24555666665432 347999999999875432 246889999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHH--H------------HHHhcc-----CCeE
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK--M------------AERLMY-----FPTW 426 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~--l------------~~~~l~-----~p~~ 426 (651)
|+||||++... .+..++..++. ..|+++||||+....... + ...++. .+..
T Consensus 227 IvDEaH~~~~~----~~~~il~~~~~------~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~ 296 (501)
T PHA02558 227 IVDECHLFTGK----SLTSIITKLDN------CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKI 296 (501)
T ss_pred EEEchhcccch----hHHHHHHhhhc------cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceE
Confidence 99999998753 45677777765 478999999986411111 1 111111 1111
Q ss_pred E--EccCCCCc----------------cC-------------ce----EEEEEEeCcch---------------------
Q psy8712 427 V--DLKGEDAV----------------PE-------------TV----HHVVVKIDPQQ--------------------- 450 (651)
Q Consensus 427 i--~~~~~~~~----------------~~-------------~i----~~~~~~~~~~~--------------------- 450 (651)
. .+...... .. .+ ...+++++..+
T Consensus 297 ~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G 376 (501)
T PHA02558 297 NSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSG 376 (501)
T ss_pred EEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 11000000 00 00 11222222111
Q ss_pred ------HHHHHHHhhccccceeecc-ccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeee
Q psy8712 451 ------DETWGRLRSHIQTDGVHAR-DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517 (651)
Q Consensus 451 ------~~~~~~l~~~~~~~~l~~t-d~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~ 517 (651)
+.......+......+.+| +.+.+|+|+|++++||++++|.+...|+||+||++|.+..+....++.
T Consensus 377 ~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 377 EVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 1111111222233456666 889999999999999999999999999999999999877654444444
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=3.8e-25 Score=249.69 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=74.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Ccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HLS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l~ 358 (651)
+++|++||++||.|.++++..+.++++ +++.+++||.+...+.... .+||++|||++| .|+++.+ .+.
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~LG---Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~ 173 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFLG---LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKV 173 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCC---CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhh
Confidence 589999999999999999999999886 9999999999876665554 489999999999 9998876 356
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
++.+.++||||+|.|+
T Consensus 174 ~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 174 QRPFHFAIIDEVDSIL 189 (745)
T ss_pred ccccceeEeecHHHHh
Confidence 7999999999999876
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=1.4e-25 Score=241.87 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=136.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH------------HHHHHHhc------cCCcEEEECch
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV------------KDQMSVLS------SGVDIVVGTPG 346 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~------------~~q~~~L~------~~~dIlV~TP~ 346 (651)
.++++++|+++|+.|+++.++.+... ++..+.|+... ........ -..+|+|+||+
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 103 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFGS------NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTID 103 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhCc------ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHH
Confidence 37999999999999999999887421 22333333221 11111111 13689999999
Q ss_pred hhHHHHhCCC----cccC--CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 347 RMEDLISGGH----LSLT--HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 347 rL~~ll~~~~----l~l~--~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
+++..+..+. ..+. ..+++||||||.+.++++.. +..+++.++.. +.|++++|||+++ .+.++...+
T Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~-----~~~~i~~SATlp~-~l~~~~~~~ 176 (358)
T TIGR01587 104 QVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDN-----DVPILLMSATLPK-FLKEYAEKI 176 (358)
T ss_pred HHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHc-----CCCEEEEecCchH-HHHHHHhcC
Confidence 9988765521 1222 23789999999999865433 66666655432 5899999999986 777776655
Q ss_pred ccCCeEEEcc---------------CCCCc------------cCceEEEEEEeCcchHH--HHHHH--------------
Q psy8712 421 MYFPTWVDLK---------------GEDAV------------PETVHHVVVKIDPQQDE--TWGRL-------------- 457 (651)
Q Consensus 421 l~~p~~i~~~---------------~~~~~------------~~~i~~~~~~~~~~~~~--~~~~l-------------- 457 (651)
...+...... ..... ...-.+.+++|+..+.. .+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~ 256 (358)
T TIGR01587 177 GYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHS 256 (358)
T ss_pred CCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 4321110000 00000 00113466666654321 11111
Q ss_pred -----------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce----EEEEee
Q psy8712 458 -----------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG----LAISLV 516 (651)
Q Consensus 458 -----------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G----~ai~lv 516 (651)
+......++++|+.+++|||++ +++||+++.| .++|+||+||+||.|+.+ .++.+.
T Consensus 257 ~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~ 333 (358)
T TIGR01587 257 RFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIIT 333 (358)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEe
Confidence 2223456788999999999996 8999999888 789999999999998643 566555
Q ss_pred eC
Q psy8712 517 ST 518 (651)
Q Consensus 517 ~~ 518 (651)
..
T Consensus 334 ~~ 335 (358)
T TIGR01587 334 IA 335 (358)
T ss_pred ec
Confidence 54
No 70
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=2e-25 Score=213.81 Aligned_cols=123 Identities=35% Similarity=0.612 Sum_probs=104.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH-HHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK-DQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~-~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
++||++|+++|+.|+.+.+..+.... ++++..++|+.... .....+..+++|+|+||+++.+++......+.++++
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~ 122 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNT---NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSL 122 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTT---TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESE
T ss_pred eEEEEeeccccccccccccccccccc---ccccccccccccccccccccccccccccccCcchhhcccccccccccccee
Confidence 79999999999999999999988763 48888999998865 555566667999999999999999987667888999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
|||||+|.+..+.+...+..+++.+.... +.|++++|||+++ .++++
T Consensus 123 iViDE~h~l~~~~~~~~~~~i~~~~~~~~----~~~~i~~SAT~~~-~~~~~ 169 (169)
T PF00270_consen 123 IVIDEAHHLSDETFRAMLKSILRRLKRFK----NIQIILLSATLPS-NVEKL 169 (169)
T ss_dssp EEEETHHHHHHTTHHHHHHHHHHHSHTTT----TSEEEEEESSSTH-HHHHH
T ss_pred eccCcccccccccHHHHHHHHHHHhcCCC----CCcEEEEeeCCCh-hHhhC
Confidence 99999999999888888988888874421 4799999999994 77653
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=1.3e-24 Score=246.99 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=67.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc---HHHHHHHhccCCcEEEECchhh-HHHHhC------C
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN---VKDQMSVLSSGVDIVVGTPGRM-EDLISG------G 355 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~---~~~q~~~L~~~~dIlV~TP~rL-~~ll~~------~ 355 (651)
.++|++||++||.|.++++..+.++++ +++.+++++.. ...+......++||++|||++| .+++.. .
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LG---Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~ 189 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLG---LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKE 189 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcC---CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchh
Confidence 589999999999999999999998886 88888877632 2222333335799999999999 566543 2
Q ss_pred CcccCCcceEeeccchhhh
Q psy8712 356 HLSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 356 ~l~l~~l~~lViDEaD~ll 374 (651)
...++.+.++||||||.|+
T Consensus 190 ~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 190 GKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hcccccCcEEEEecHhhHh
Confidence 3457889999999999986
No 72
>KOG0352|consensus
Probab=99.92 E-value=1.3e-24 Score=224.10 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=148.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h---ccCCcEEEECchhhHHHHh----CC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L---SSGVDIVVGTPGRMEDLIS----GG 355 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L---~~~~dIlV~TP~rL~~ll~----~~ 355 (651)
..||++|..+|...+.+.+.++. +.+..+.+-.+..+..+. | +.+..|+..||+....-.. ++
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LK-------Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLK-------VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcC-------CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 57899999999998888887764 555555555444333322 2 3367899999998743221 22
Q ss_pred CcccCCcceEeeccchhhhhcc--chHHHHHHH---hcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEc
Q psy8712 356 HLSLTHCRFFVLDEADGLLKQG--YGNLIDRMH---KQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDL 429 (651)
Q Consensus 356 ~l~l~~l~~lViDEaD~ll~~g--f~~~i~~il---~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~ 429 (651)
..+-+.+.++|+|||||..+|| |+++...+- ..++ ...-+.++||.+++.-+++...+ +++|+-+.-
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk 208 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFK 208 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-------CCceEEeecccChhHHHHHHHHHhhcCcHHhcc
Confidence 2234568899999999999996 888876553 3343 47889999999883333443332 445543221
Q ss_pred cCC------------CC------------------------ccCce-EEEEEEeCcchHH--HHHHH-hh----------
Q psy8712 430 KGE------------DA------------------------VPETV-HHVVVKIDPQQDE--TWGRL-RS---------- 459 (651)
Q Consensus 430 ~~~------------~~------------------------~~~~i-~~~~~~~~~~~~~--~~~~l-~~---------- 459 (651)
.+. +. .+... -.-++.|.+++.. ....+ ..
T Consensus 209 TP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAG 288 (641)
T KOG0352|consen 209 TPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAG 288 (641)
T ss_pred CcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcc
Confidence 100 00 00000 0124455554322 11111 11
Q ss_pred --------------ccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 460 --------------HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 460 --------------~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
..+.-+|.+|..+..|+|.|+|++|||+++|.+...|+|..||+||+|+..+|-++++.+|...
T Consensus 289 LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 289 LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 1234456778889999999999999999999999999999999999999999999999876543
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=249.78 Aligned_cols=225 Identities=18% Similarity=0.268 Sum_probs=163.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++++|+|+|+||.++++.++++..+ +++|...+|+.+..... -.+++|||+|||++..++++...-+..+++|
T Consensus 78 k~vYivPlkALa~Ek~~~~~~~~~~----GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lv 150 (766)
T COG1204 78 KVVYIVPLKALAEEKYEEFSRLEEL----GIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLV 150 (766)
T ss_pred cEEEEeChHHHHHHHHHHhhhHHhc----CCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEE
Confidence 6899999999999999999955543 49999999998855422 1358999999999999998887778999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE-----------------E-
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW-----------------V- 427 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~-----------------i- 427 (651)
||||+|.+.+...++.++.|+.+++.... ..|++++|||++ +..+++.++-.++.. +
T Consensus 151 ViDEiH~l~d~~RG~~lE~iv~r~~~~~~---~~rivgLSATlp--N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~ 225 (766)
T COG1204 151 VIDEIHLLGDRTRGPVLESIVARMRRLNE---LIRIVGLSATLP--NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFL 225 (766)
T ss_pred EEeeeeecCCcccCceehhHHHHHHhhCc---ceEEEEEeeecC--CHHHHHHHhCCcccccCCCCcccccCCccceEEE
Confidence 99999999887788888888888766421 389999999998 688888876443221 0
Q ss_pred EccCCCC----------------ccCceEEEEEEeCcchHH---------------------------------------
Q psy8712 428 DLKGEDA----------------VPETVHHVVVKIDPQQDE--------------------------------------- 452 (651)
Q Consensus 428 ~~~~~~~----------------~~~~i~~~~~~~~~~~~~--------------------------------------- 452 (651)
....... ......|+.+||++++..
T Consensus 226 ~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (766)
T COG1204 226 GADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSE 305 (766)
T ss_pred EecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccc
Confidence 0110110 112335777777765411
Q ss_pred -------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEE----EeC-----CCCChhhhhh
Q psy8712 453 -------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFII----NMT-----LPDDKANYVH 498 (651)
Q Consensus 453 -------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VI----n~d-----lP~s~~~Yih 498 (651)
..+..++.....++.+|..++.|++.|.-++|| -|| .+-+.-+|+|
T Consensus 306 ~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~Q 385 (766)
T COG1204 306 DEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQ 385 (766)
T ss_pred hHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhh
Confidence 111114444566677888888899999866665 377 5678899999
Q ss_pred hcCccccCCC--ceEEEEeeeCCccc
Q psy8712 499 RIGRVGRAER--MGLAISLVSTVPEK 522 (651)
Q Consensus 499 RiGR~GR~g~--~G~ai~lv~~~de~ 522 (651)
+.|||||.|- .|.++.+....++.
T Consensus 386 M~GRAGRPg~d~~G~~~i~~~~~~~~ 411 (766)
T COG1204 386 MAGRAGRPGYDDYGEAIILATSHDEL 411 (766)
T ss_pred ccCcCCCCCcCCCCcEEEEecCccch
Confidence 9999999875 56777777444433
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=6e-24 Score=228.52 Aligned_cols=208 Identities=17% Similarity=0.176 Sum_probs=127.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCC-CCCeeEEEEeCCccHH--HH------------------HHHhccCCcEEEEC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFIT-DPKIRELLIIGGVNVK--DQ------------------MSVLSSGVDIVVGT 344 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~i~v~~l~Gg~~~~--~q------------------~~~L~~~~dIlV~T 344 (651)
++++++|+++|+.|+++.++.+...+. ..++.+..+.|....+ .. .....+.++|+++|
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 479999999999999999998875432 1236666666642211 00 01113468999999
Q ss_pred chhhHHHHhCCC-----c---ccCCcceEeeccchhhhhccc-----hHHHHHHHhcCCCccCCCCceeEEEEeeccChH
Q psy8712 345 PGRMEDLISGGH-----L---SLTHCRFFVLDEADGLLKQGY-----GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDF 411 (651)
Q Consensus 345 P~rL~~ll~~~~-----l---~l~~l~~lViDEaD~ll~~gf-----~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~ 411 (651)
|+.+..+++... . .+.+++++||||+|.+..+.. .-....+++.... ..+++++|||+++
T Consensus 121 p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~i~lSAT~~~- 193 (357)
T TIGR03158 121 PDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC------RRKFVFLSATPDP- 193 (357)
T ss_pred HHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc------CCcEEEEecCCCH-
Confidence 999977665321 1 257899999999999764321 1123333333332 3699999999987
Q ss_pred HHHHHHHHh--ccCCeEEEccCC-------------------CCccCceE------------------------------
Q psy8712 412 DVKKMAERL--MYFPTWVDLKGE-------------------DAVPETVH------------------------------ 440 (651)
Q Consensus 412 ~v~~l~~~~--l~~p~~i~~~~~-------------------~~~~~~i~------------------------------ 440 (651)
.+....... +..|.. .+.+. ..+...++
T Consensus 194 ~~~~~l~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~ 272 (357)
T TIGR03158 194 ALILRLQNAKQAGVKIA-PIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPG 272 (357)
T ss_pred HHHHHHHhccccCceee-eecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCC
Confidence 655555543 332211 11111 00001222
Q ss_pred -EEEEEeCcchH--HHHHHHhh---------------------ccccceeeccccccCCCCCCCCCEEEEeCCCCChhhh
Q psy8712 441 -HVVVKIDPQQD--ETWGRLRS---------------------HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANY 496 (651)
Q Consensus 441 -~~~~~~~~~~~--~~~~~l~~---------------------~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~Y 496 (651)
..+++|++... .....+.. ..+..++.+|+.++||||++.+ +|| ++ |.+.++|
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~y 349 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAF 349 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHH
Confidence 34555554332 11122211 1134677889999999999987 666 56 9999999
Q ss_pred hhhcCccc
Q psy8712 497 VHRIGRVG 504 (651)
Q Consensus 497 ihRiGR~G 504 (651)
+||+||+|
T Consensus 350 iqR~GR~g 357 (357)
T TIGR03158 350 WQRLGRLG 357 (357)
T ss_pred hhhcccCC
Confidence 99999997
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.91 E-value=1.8e-23 Score=241.37 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=76.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h-ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L-SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L-~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
++|||+||++|+.|+.+.+++.. + .++..+.|+.+..++.+. + ...++||||||+.+. +.+++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f---g---~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~ 258 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF---G---APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKN 258 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh---C---CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccC
Confidence 79999999999999999998643 2 678889999876554433 2 345899999998763 45789
Q ss_pred cceEeeccchhhhhcc---chHHHHHHH--hcCCCccCCCCceeEEEEeeccCh
Q psy8712 362 CRFFVLDEADGLLKQG---YGNLIDRMH--KQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 362 l~~lViDEaD~ll~~g---f~~~i~~il--~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+++|||||+|....+. ...+.+.+. +.... +.|++++|||.+.
T Consensus 259 l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~------~~~~il~SATps~ 306 (679)
T PRK05580 259 LGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE------NIPVVLGSATPSL 306 (679)
T ss_pred CCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc------CCCEEEEcCCCCH
Confidence 9999999999765321 111222221 12222 5899999999765
No 76
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.91 E-value=8.1e-24 Score=225.26 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=151.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH----HhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS----VLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~----~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
+.|+|+|..+||+|-++.|+.-...+. +++..-+|-...+.... .-...+||||||-+-+..+++.+ -.+.+
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~Lg---lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgd 338 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLG---LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGD 338 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhccc---ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccc
Confidence 689999999999999999987666554 78777777655433321 11235899999999999999988 66899
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC----------
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG---------- 431 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~---------- 431 (651)
+..+||||+|.+-+...++-+.-++.+|....+ ..|+|.+|||+. +-..+++.+-.+++..+-.+
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~---~AQ~i~LSATVg--Np~elA~~l~a~lV~y~~RPVplErHlvf~ 413 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP---GAQFIYLSATVG--NPEELAKKLGAKLVLYDERPVPLERHLVFA 413 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCC---CCeEEEEEeecC--ChHHHHHHhCCeeEeecCCCCChhHeeeee
Confidence 999999999999886666666666655544332 479999999997 56778887754433221110
Q ss_pred --CCCccC-----------------ceEEEEEEeCcchHHH---------------------------HHHHhhccccce
Q psy8712 432 --EDAVPE-----------------TVHHVVVKIDPQQDET---------------------------WGRLRSHIQTDG 465 (651)
Q Consensus 432 --~~~~~~-----------------~i~~~~~~~~~~~~~~---------------------------~~~l~~~~~~~~ 465 (651)
+....+ ---|.++|..++.+.. .+..+......+
T Consensus 414 ~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~ 493 (830)
T COG1202 414 RNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAA 493 (830)
T ss_pred cCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcce
Confidence 110000 0124455555443221 111122333344
Q ss_pred eeccccccCCCCCCCCCEEEEeCCC-----CChhhhhhhcCccccCC--CceEEEEeeeCC
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLP-----DDKANYVHRIGRVGRAE--RMGLAISLVSTV 519 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP-----~s~~~YihRiGR~GR~g--~~G~ai~lv~~~ 519 (651)
++.|..+..|+|+|. +.||.-.+. -++.+|.|+.||+||.+ ..|.+++++.+.
T Consensus 494 VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 494 VVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred EeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 445666677999996 666654443 27899999999999987 479999999873
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=1.4e-22 Score=239.55 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=86.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++.+.... ..++..+.|+.+... ...+....+|+|+||+.+...+..+.+.+.++++|
T Consensus 60 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~---~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~li 135 (773)
T PRK13766 60 KVLILAPTKPLVEQHAEFFRKFLNIP---EEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLL 135 (773)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCC---CceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 69999999999999999998876422 246777888776654 34455568999999999988887888889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
||||||++........+...+..... ..+++++|||.
T Consensus 136 VvDEaH~~~~~~~~~~i~~~~~~~~~------~~~il~lTaTP 172 (773)
T PRK13766 136 IFDEAHRAVGNYAYVYIAERYHEDAK------NPLVLGLTASP 172 (773)
T ss_pred EEECCccccccccHHHHHHHHHhcCC------CCEEEEEEcCC
Confidence 99999998764333334443333322 47899999996
No 78
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=2.7e-23 Score=246.66 Aligned_cols=203 Identities=22% Similarity=0.330 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccc
Q psy8712 292 PSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEA 370 (651)
Q Consensus 292 PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEa 370 (651)
.+++||.|+.+++.. ++...+ .++ ....+ ..++++|+|+|||+|++.+....+ ++++++||||||
T Consensus 130 AArsLA~RVA~El~~~lG~~VG---Y~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEA 195 (1294)
T PRK11131 130 AARTVANRIAEELETELGGCVG---YKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEA 195 (1294)
T ss_pred HHHHHHHHHHHHHhhhhcceec---eee-------cCccc---cCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCc
Confidence 378999999999875 443221 211 11111 235789999999999998876544 899999999999
Q ss_pred h-hhhhccchHH-HHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccC-----------
Q psy8712 371 D-GLLKQGYGNL-IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE----------- 437 (651)
Q Consensus 371 D-~ll~~gf~~~-i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~----------- 437 (651)
| ++++.+|... ++.++...| +.|+|++|||++. ..+++.|.+.|. |.+.+.....+
T Consensus 196 HERsLn~DfLLg~Lk~lL~~rp-------dlKvILmSATid~---e~fs~~F~~apv-I~V~Gr~~pVei~y~p~~~~~~ 264 (1294)
T PRK11131 196 HERSLNIDFILGYLKELLPRRP-------DLKVIITSATIDP---ERFSRHFNNAPI-IEVSGRTYPVEVRYRPIVEEAD 264 (1294)
T ss_pred cccccccchHHHHHHHhhhcCC-------CceEEEeeCCCCH---HHHHHHcCCCCE-EEEcCccccceEEEeecccccc
Confidence 9 5888887532 333332222 4799999999974 467776665553 44443321100
Q ss_pred --------------------ceEEEEEEeCcchH--HHHHHH--------------------------hhccccceeecc
Q psy8712 438 --------------------TVHHVVVKIDPQQD--ETWGRL--------------------------RSHIQTDGVHAR 469 (651)
Q Consensus 438 --------------------~i~~~~~~~~~~~~--~~~~~l--------------------------~~~~~~~~l~~t 469 (651)
.-..+++|++...+ .....+ .......++.+|
T Consensus 265 ~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVAT 344 (1294)
T PRK11131 265 DTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLAT 344 (1294)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEec
Confidence 01224455544331 111111 011234567789
Q ss_pred ccccCCCCCCCCCEEEEeC---------------CC---CChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 470 DNARPGIDISGLPFIINMT---------------LP---DDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~d---------------lP---~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
|.+++|||||+|++|||++ +| .|..+|.||+|||||. ..|.||.|+++++
T Consensus 345 NIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 345 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred cHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 9999999999999999986 44 4558999999999999 7899999999754
No 79
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=4e-22 Score=211.52 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=90.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+||+.|+.|+.+.|.++..-- .-.++.++|..+.++....+ ...+|+|+||+.+.+-+..+.+++.++.++
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip---~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~l 135 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIP---EDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLL 135 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCC---hhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEE
Confidence 69999999999999999999887643 35778888888876655444 457999999999999999999999999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
|+||||+-....-+-.+.+-+-+-.+ ++.++++|||..+
T Consensus 136 ifDEAHRAvGnyAYv~Va~~y~~~~k------~~~ilgLTASPGs 174 (542)
T COG1111 136 IFDEAHRAVGNYAYVFVAKEYLRSAK------NPLILGLTASPGS 174 (542)
T ss_pred EechhhhccCcchHHHHHHHHHHhcc------CceEEEEecCCCC
Confidence 99999998764333334332222222 5799999999765
No 80
>KOG0952|consensus
Probab=99.88 E-value=6.8e-22 Score=222.85 Aligned_cols=260 Identities=17% Similarity=0.225 Sum_probs=168.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC--c-cc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH--L-SL 359 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~--l-~l 359 (651)
+..++++|+|+++||..+.+-+.+-. ...+++|..++|+....... . ..++|||+|||++.-.-++.. . -+
T Consensus 163 ~~fKiVYIaPmKALa~Em~~~~~kkl---~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 163 DDFKIVYIAPMKALAAEMVDKFSKKL---APLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred CCceEEEEechHHHHHHHHHHHhhhc---ccccceEEEecCcchhhHHH-H--HhcCEEEecccceeeeeeeeccchhhh
Confidence 34589999999999998777654433 33359999999998754433 1 248999999999854333322 2 25
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccCCe-------------
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT------------- 425 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~------------- 425 (651)
+.|++|||||+|.|-+ ..++.++.|+.++... .......+++++|||+| ++.+++..+-.+|.
T Consensus 237 ~~V~LviIDEVHlLhd-~RGpvlEtiVaRtlr~vessqs~IRivgLSATlP--N~eDvA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHLLHD-DRGPVLETIVARTLRLVESSQSMIRIVGLSATLP--NYEDVARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred hheeeEEeeeehhhcC-cccchHHHHHHHHHHHHHhhhhheEEEEeeccCC--CHHHHHHHhcCCCccceeeeccccccc
Confidence 8899999999998866 5778888887765421 11223689999999998 78888887765531
Q ss_pred EE-----EccCC--CCccC---------------ceEEEEEEeCcchHH-------------------------------
Q psy8712 426 WV-----DLKGE--DAVPE---------------TVHHVVVKIDPQQDE------------------------------- 452 (651)
Q Consensus 426 ~i-----~~~~~--~~~~~---------------~i~~~~~~~~~~~~~------------------------------- 452 (651)
.+ -.... ..... .=+|++++|..+.+.
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 11 11111 01111 125677887766421
Q ss_pred -------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCC-----C------ChhhhhhhcCc
Q psy8712 453 -------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLP-----D------DKANYVHRIGR 502 (651)
Q Consensus 453 -------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP-----~------s~~~YihRiGR 502 (651)
..++.+......++.||..++-|+++|+ .+||.-+-+ . .+-+-+|..||
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGR 472 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGR 472 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhc
Confidence 1111133344556677888888999997 556654433 2 45678999999
Q ss_pred cccC--CCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHH
Q psy8712 503 VGRA--ERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEH 580 (651)
Q Consensus 503 ~GR~--g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~ 580 (651)
|||. +..|.++.+.+. |....|. .|+... .. -|.+++..+-++
T Consensus 473 AGRPqFd~~G~giIiTt~-dkl~~Y~--------------sLl~~~-----------------~p---iES~~~~~L~dn 517 (1230)
T KOG0952|consen 473 AGRPQFDSSGEGIIITTR-DKLDHYE--------------SLLTGQ-----------------NP---IESQLLPCLIDN 517 (1230)
T ss_pred cCCCCCCCCceEEEEecc-cHHHHHH--------------HHHcCC-----------------Ch---hHHHHHHHHHHh
Confidence 9994 578988877654 3333332 111111 11 378889999999
Q ss_pred hcCcccc
Q psy8712 581 LNVTIQQ 587 (651)
Q Consensus 581 ~~~~i~~ 587 (651)
++.+|..
T Consensus 518 LnAEi~L 524 (1230)
T KOG0952|consen 518 LNAEISL 524 (1230)
T ss_pred hhhheee
Confidence 9987764
No 81
>KOG0353|consensus
Probab=99.86 E-value=5.2e-21 Score=194.76 Aligned_cols=219 Identities=18% Similarity=0.241 Sum_probs=143.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhc---cCCcEEEECchhhHH---HHh--C
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLS---SGVDIVVGTPGRMED---LIS--G 354 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~---~~~dIlV~TP~rL~~---ll~--~ 354 (651)
.+||++|...|+..+.-+++.++ +....+....+.++.. ..+. ....++..||+.+.. ++. .
T Consensus 136 ~alvi~plislmedqil~lkqlg-------i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle 208 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQLG-------IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE 208 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHhC-------cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH
Confidence 58999999999998888888876 5555555444432221 2222 246899999999854 222 1
Q ss_pred CCcccCCcceEeeccchhhhhcc--chHHHHH--HHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc---------
Q psy8712 355 GHLSLTHCRFFVLDEADGLLKQG--YGNLIDR--MHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM--------- 421 (651)
Q Consensus 355 ~~l~l~~l~~lViDEaD~ll~~g--f~~~i~~--il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l--------- 421 (651)
+.+....++++.|||+||-.+|| |+++... |+++--+ +..++.++||.++ .|.+-++.++
T Consensus 209 ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~------~~~iigltatatn-~vl~d~k~il~ie~~~tf~ 281 (695)
T KOG0353|consen 209 KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFK------GAPIIGLTATATN-HVLDDAKDILCIEAAFTFR 281 (695)
T ss_pred HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCC------CCceeeeehhhhc-chhhHHHHHHhHHhhheee
Confidence 34556778899999999999986 7777553 3443322 5799999999987 5555444432
Q ss_pred ---cCCe-EEEccCCCCc--------cCce--------EEEEEEeCcchHHHHHHHh-hcc-------------------
Q psy8712 422 ---YFPT-WVDLKGEDAV--------PETV--------HHVVVKIDPQQDETWGRLR-SHI------------------- 461 (651)
Q Consensus 422 ---~~p~-~i~~~~~~~~--------~~~i--------~~~~~~~~~~~~~~~~~l~-~~~------------------- 461 (651)
+.|. ...+...... ...| --.+++.....++....+. .++
T Consensus 282 a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 282 AGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred cccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 1121 1111111110 0011 1133444333344444441 222
Q ss_pred -----ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhh--------------------------------------
Q psy8712 462 -----QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH-------------------------------------- 498 (651)
Q Consensus 462 -----~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~Yih-------------------------------------- 498 (651)
+..++++|-.+..|||.|+|++|||..+|.+.++|+|
T Consensus 362 ~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffa 441 (695)
T KOG0353|consen 362 GWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFA 441 (695)
T ss_pred cccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeee
Confidence 3344556677777999999999999999999999999
Q ss_pred -----hcCccccCCCceEEEEeeeC
Q psy8712 499 -----RIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 499 -----RiGR~GR~g~~G~ai~lv~~ 518 (651)
..||+||.+.+..||+++.-
T Consensus 442 vfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 442 VFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred eecchhccccccCCCcccEEEEech
Confidence 88999999999999999874
No 82
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.1e-21 Score=224.14 Aligned_cols=83 Identities=16% Similarity=0.336 Sum_probs=75.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCCcccC-----
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGHLSLT----- 360 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~l~l~----- 360 (651)
++||+||++||.|+.+++..+.++++ +++.+++||.+...+...+ ++||+||||++| .++++.+.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lG---LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLG---LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhh
Confidence 78999999999999999999999886 9999999999998887666 599999999999 999998877665
Q ss_pred --CcceEeeccchhhh
Q psy8712 361 --HCRFFVLDEADGLL 374 (651)
Q Consensus 361 --~l~~lViDEaD~ll 374 (651)
.+.++||||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 45899999999887
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=6.6e-21 Score=210.15 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=208.2
Q ss_pred cccccccccCCCC------------CCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHH
Q psy8712 233 KNAEMSFNFGATP------------FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQT 300 (651)
Q Consensus 233 k~~~~~~~f~~~~------------~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi 300 (651)
++...+..|..|. +..+-|+|++.++++|||||.++.+|+. .....+.|+..++||--||.|+
T Consensus 253 ~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml-----~ai~~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 253 AKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAML-----AAIEAGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHH-----HHHHcCCeeEEeccHHHHHHHH
Confidence 3455666777665 8889999999999999999999999882 2245678999999999999999
Q ss_pred HHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhccC-CcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc
Q psy8712 301 FNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSSG-VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ 376 (651)
Q Consensus 301 ~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~ 376 (651)
++.+.++...++ +++..++|....+... ..+.+| .||||||- .+....+.++++.++|+||-|++
T Consensus 328 ~~~~~~~l~~~~---i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF--- 396 (677)
T COG1200 328 YESLRKWLEPLG---IRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF--- 396 (677)
T ss_pred HHHHHHHhhhcC---CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc---
Confidence 999999988776 9999999987754444 444455 99999994 45566788999999999999974
Q ss_pred cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc------------cCCeEEEccCCCCcc---C----
Q psy8712 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM------------YFPTWVDLKGEDAVP---E---- 437 (651)
Q Consensus 377 gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l------------~~p~~i~~~~~~~~~---~---- 437 (651)
+-.=+..+..-... .+.++.+|||.-| ....+...-. +.|+.-.+...+..+ +
T Consensus 397 --GV~QR~~L~~KG~~-----~Ph~LvMTATPIP-RTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 397 --GVHQRLALREKGEQ-----NPHVLVMTATPIP-RTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred --cHHHHHHHHHhCCC-----CCcEEEEeCCCch-HHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 33333333332210 3689999999876 3333332211 112211111111111 0
Q ss_pred ---ceEEEEEEeCcch-------------------------------------HHHHHHHhhccccceeeccccccCCCC
Q psy8712 438 ---TVHHVVVKIDPQQ-------------------------------------DETWGRLRSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 438 ---~i~~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~~~l~~td~~~rGID 477 (651)
.=+|.|+.|+--+ ++.....++..+.+++++|.+...|||
T Consensus 469 ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVd 548 (677)
T COG1200 469 EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVD 548 (677)
T ss_pred HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEeccc
Confidence 1134555543211 111111245556788888999999999
Q ss_pred CCCCCEEEEeCCCCChhhhhhhc-CccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 478 ISGLPFIINMTLPDDKANYVHRI-GRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 478 ip~v~~VIn~dlP~s~~~YihRi-GR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
+|+.+++|.+|.-+=--+-+|+. ||+||.+..++|++++.+...+
T Consensus 549 VPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~---------------------------------- 594 (677)
T COG1200 549 VPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSE---------------------------------- 594 (677)
T ss_pred CCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCCh----------------------------------
Confidence 99999999999887655556665 9999999999999999873100
Q ss_pred cccccCCcccchhHHHHHHHHHHH-hcCccccccccccCCcccCCCceeecceeccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEH-LNVTIQQVDDKLEIPADEFDGKVVYGQKRVNM 612 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~-~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 612 (651)
.-.+.|+-+.+. =|..|++.+.+++-|. ...|.++++.
T Consensus 595 ------------~a~~RL~im~~t~DGF~IAE~DLklRGpG------e~lG~rQSG~ 633 (677)
T COG1200 595 ------------VAKQRLKIMRETTDGFVIAEEDLKLRGPG------ELLGTRQSGL 633 (677)
T ss_pred ------------hHHHHHHHHHhcCCcceehhhhHhccCCc------cccCCcccCC
Confidence 124667666653 3588998888888554 3456666665
No 84
>KOG0354|consensus
Probab=99.85 E-value=1.6e-20 Score=209.99 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=86.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcc-cCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS-LTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~-l~~l~~ 364 (651)
++++++||+-|+.|+...+..++.. ..+....||.........+-...+|+|.||+.+.+.|.++... ++.+.+
T Consensus 108 KiVF~aP~~pLv~QQ~a~~~~~~~~-----~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~ 182 (746)
T KOG0354|consen 108 KVVFLAPTRPLVNQQIACFSIYLIP-----YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSL 182 (746)
T ss_pred eEEEeeCCchHHHHHHHHHhhccCc-----ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEE
Confidence 7999999999999999777666542 4555666665544444456667899999999999988887665 599999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+||||||+-.....+..+.+-+-.++.. ..|+|++|||+.+
T Consensus 183 iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~-----~~qILgLTASpG~ 223 (746)
T KOG0354|consen 183 IVFDECHRTSKNHPYNNIMREYLDLKNQ-----GNQILGLTASPGS 223 (746)
T ss_pred EEEcccccccccccHHHHHHHHHHhhhc-----cccEEEEecCCCc
Confidence 9999999988766555555333333331 3599999999865
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=2.1e-20 Score=223.07 Aligned_cols=173 Identities=21% Similarity=0.306 Sum_probs=120.4
Q ss_pred ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccch-hhhhccchHH-HHHHHhcCCCccCCCCceeEEEEeeccChHH
Q psy8712 335 SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEAD-GLLKQGYGNL-IDRMHKQIPKITSDGKRLQMIVCSATLHDFD 412 (651)
Q Consensus 335 ~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD-~ll~~gf~~~-i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~ 412 (651)
....+|+++|||+|++.+.... .++++++||||||| ++++.+|.-. ++.++...+ +.|+|++|||++.
T Consensus 154 s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-------dLKlIlmSATld~-- 223 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-------DLKIIITSATIDP-- 223 (1283)
T ss_pred CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-------CCeEEEEeCCcCH--
Confidence 3468999999999999887654 37999999999999 5888777543 555654443 4799999999964
Q ss_pred HHHHHHHhccCCeEEEccCCCCccC-------------------------------ceEEEEEEeCcchH--HHHHHHh-
Q psy8712 413 VKKMAERLMYFPTWVDLKGEDAVPE-------------------------------TVHHVVVKIDPQQD--ETWGRLR- 458 (651)
Q Consensus 413 v~~l~~~~l~~p~~i~~~~~~~~~~-------------------------------~i~~~~~~~~~~~~--~~~~~l~- 458 (651)
..+++.|...|. |.+.+.....+ .-..+++|++...+ .....+.
T Consensus 224 -~~fa~~F~~apv-I~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 224 -ERFSRHFNNAPI-IEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred -HHHHHHhcCCCE-EEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 466666655443 33332211000 01235566655432 1111110
Q ss_pred -------------------------hccccceeeccccccCCCCCCCCCEEEEeCCCC------------------Chhh
Q psy8712 459 -------------------------SHIQTDGVHARDNARPGIDISGLPFIINMTLPD------------------DKAN 495 (651)
Q Consensus 459 -------------------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~------------------s~~~ 495 (651)
......++.+||.+++|||||+|++||++++|+ |..+
T Consensus 302 ~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkas 381 (1283)
T TIGR01967 302 RNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQAS 381 (1283)
T ss_pred cCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHH
Confidence 111236677899999999999999999999653 5679
Q ss_pred hhhhcCccccCCCceEEEEeeeCCc
Q psy8712 496 YVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 496 YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
|.||+|||||.+ .|.||.|+++++
T Consensus 382 a~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 382 ANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred HHHHhhhhCCCC-CceEEEecCHHH
Confidence 999999999997 999999999754
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=1.4e-18 Score=194.19 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=75.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH---Hhc-cCCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS---VLS-SGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~---~L~-~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.++|||+|+++|+.|+++.+++... .++..+.++.+..+... .+. ..++|||||+..+. ..++
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~------~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~ 92 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFG------SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFK 92 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC------CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------Cccc
Confidence 3799999999999999999986532 56778888877654433 233 35799999998663 3578
Q ss_pred CcceEeeccchhhhhcc---ch---HHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 361 HCRFFVLDEADGLLKQG---YG---NLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~g---f~---~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
++++|||||+|....+. .. .++........ +.+++++|||.+.
T Consensus 93 ~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~-------~~~vil~SATPsl 141 (505)
T TIGR00595 93 NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF-------NCPVVLGSATPSL 141 (505)
T ss_pred CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-------CCCEEEEeCCCCH
Confidence 99999999999876322 22 22333333332 5899999999654
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=1.1e-18 Score=198.57 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=137.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC--------Cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG--------HL 357 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~--------~l 357 (651)
.+|||||+.+|+.|..+.+.++.... ...+..+.|+.... .....+|+|+|...+.....+. .+
T Consensus 300 ~tLILvps~~Lv~QW~~ef~~~~~l~---~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l 371 (732)
T TIGR00603 300 SCLVLCTSAVSVEQWKQQFKMWSTID---DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWL 371 (732)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCC---CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHh
Confidence 48999999999999999999875322 24555566653321 1123689999998764322211 12
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHH--HH----------------HHHH-
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFD--VK----------------KMAE- 418 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~--v~----------------~l~~- 418 (651)
.-....+||+||||++-. +...+++..+.. ...+++|||+...+ +. ++.+
T Consensus 372 ~~~~~gLII~DEvH~lpA----~~fr~il~~l~a-------~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~ 440 (732)
T TIGR00603 372 TNREWGLILLDEVHVVPA----AMFRRVLTIVQA-------HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKK 440 (732)
T ss_pred ccccCCEEEEEccccccH----HHHHHHHHhcCc-------CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhC
Confidence 224677999999999854 334556666543 46799999985311 11 1111
Q ss_pred HhccCCe----EEEccCCC-----------------C----------cc----CceEEEEEEeCcch-------------
Q psy8712 419 RLMYFPT----WVDLKGED-----------------A----------VP----ETVHHVVVKIDPQQ------------- 450 (651)
Q Consensus 419 ~~l~~p~----~i~~~~~~-----------------~----------~~----~~i~~~~~~~~~~~------------- 450 (651)
.++.++. ++.+..+. . .. ..-++.+++++...
T Consensus 441 G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~ 520 (732)
T TIGR00603 441 GFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKPF 520 (732)
T ss_pred CccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCce
Confidence 0111111 11111000 0 00 01235666665432
Q ss_pred ----------HHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCC-CChhhhhhhcCccccCCCceEE-------
Q psy8712 451 ----------DETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLP-DDKANYVHRIGRVGRAERMGLA------- 512 (651)
Q Consensus 451 ----------~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP-~s~~~YihRiGR~GR~g~~G~a------- 512 (651)
...+..++.+-....+.+++...+|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 521 I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~f 600 (732)
T TIGR00603 521 IYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFF 600 (732)
T ss_pred EECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceE
Confidence 1111122223345677888999999999999999999998 5999999999999999877665
Q ss_pred EEeeeCCcccccc
Q psy8712 513 ISLVSTVPEKVWY 525 (651)
Q Consensus 513 i~lv~~~de~~~~ 525 (651)
|+|++++.....|
T Consensus 601 Y~lVs~dT~E~~~ 613 (732)
T TIGR00603 601 YSLVSKDTQEMYY 613 (732)
T ss_pred EEEecCCchHHHH
Confidence 9999987555544
No 88
>KOG0947|consensus
Probab=99.80 E-value=8.8e-19 Score=195.85 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=97.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++++-+|-++|.+|-++.|+.-.. .+.+++|+..... .+.++|+|.+.|.+|+-++.-.++++.+
T Consensus 341 TR~iYTSPIKALSNQKfRDFk~tF~-------DvgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~ 406 (1248)
T KOG0947|consen 341 TRTIYTSPIKALSNQKFRDFKETFG-------DVGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEF 406 (1248)
T ss_pred cceEecchhhhhccchHHHHHHhcc-------ccceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccce
Confidence 3789999999999999988876432 2237888877544 4789999999999999998888899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
+|+||+|-+.|...+...++++-.||. ..++|++|||+| +..+|+.++-
T Consensus 407 VIFDEVHYiND~eRGvVWEEViIMlP~------HV~~IlLSATVP--N~~EFA~WIG 455 (1248)
T KOG0947|consen 407 VIFDEVHYINDVERGVVWEEVIIMLPR------HVNFILLSATVP--NTLEFADWIG 455 (1248)
T ss_pred EEEeeeeecccccccccceeeeeeccc------cceEEEEeccCC--ChHHHHHHhh
Confidence 999999999998888889999999998 699999999998 5667777653
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.77 E-value=9.2e-18 Score=196.10 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=125.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---------------------HHhc---c---CC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---------------------SVLS---S---GV 338 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---------------------~~L~---~---~~ 338 (651)
++++..||+++++|+++.++.+.+..-. ..++.++.|........ ..+. + -.
T Consensus 333 gi~~aLPT~Atan~m~~Rl~~~~~~~f~-~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~lla 411 (878)
T PRK09694 333 SIIFALPTQATANAMLSRLEALASKLFP-SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLG 411 (878)
T ss_pred eEEEECcHHHHHHHHHHHHHHHHHHhcC-CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcC
Confidence 6889999999999999999875543211 23556666654321110 1111 1 16
Q ss_pred cEEEECchhhHH-HHhCCCcccCCc----ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHH
Q psy8712 339 DIVVGTPGRMED-LISGGHLSLTHC----RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV 413 (651)
Q Consensus 339 dIlV~TP~rL~~-ll~~~~l~l~~l----~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v 413 (651)
+|+|||+.+++. .+..+...++.+ +.|||||+|.+ +.-....+..+++.+... ...+|++|||+|....
T Consensus 412 pi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-----g~~vIllSATLP~~~r 485 (878)
T PRK09694 412 QIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-----GGSVILLSATLPATLK 485 (878)
T ss_pred CEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHH
Confidence 999999988875 333322222222 48999999976 322334456666655442 4679999999997333
Q ss_pred HHHHHHhccC---------C-------------------------eEEEccCC---CCcc------------CceEEEEE
Q psy8712 414 KKMAERLMYF---------P-------------------------TWVDLKGE---DAVP------------ETVHHVVV 444 (651)
Q Consensus 414 ~~l~~~~l~~---------p-------------------------~~i~~~~~---~~~~------------~~i~~~~~ 444 (651)
..+.+.+-.. | ..+.+... ...+ ..-.++++
T Consensus 486 ~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLV 565 (878)
T PRK09694 486 QKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCL 565 (878)
T ss_pred HHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEE
Confidence 3444432110 0 01111000 0000 01123455
Q ss_pred EeCcchH--HHHHHH--------------------------------h-hccc---cceeeccccccCCCCCCCCCEEEE
Q psy8712 445 KIDPQQD--ETWGRL--------------------------------R-SHIQ---TDGVHARDNARPGIDISGLPFIIN 486 (651)
Q Consensus 445 ~~~~~~~--~~~~~l--------------------------------~-~~~~---~~~l~~td~~~rGIDip~v~~VIn 486 (651)
++++.++ +.+..+ + +..+ ..++++|+.+++|||| +++++|.
T Consensus 566 f~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt 644 (878)
T PRK09694 566 ICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT 644 (878)
T ss_pred EECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE
Confidence 5554331 111111 1 1111 3578899999999999 5899999
Q ss_pred eCCCCChhhhhhhcCccccCCC
Q psy8712 487 MTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 487 ~dlP~s~~~YihRiGR~GR~g~ 508 (651)
...| .+.|+||+||+||.++
T Consensus 645 dlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 645 QLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCC--HHHHHHHHhccCCCCC
Confidence 9888 6899999999999986
No 90
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.76 E-value=2.6e-17 Score=159.91 Aligned_cols=136 Identities=32% Similarity=0.592 Sum_probs=109.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCC-cEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV-DIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~-dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.+||++||+.++.|+.+.+..+..... .......++.........+..+. +|+++|++.+.+.+........++++
T Consensus 56 ~~l~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~ 132 (201)
T smart00487 56 RVLVLVPTRELAEQWAEELKKLGPSLG---LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDL 132 (201)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhccCC---eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCE
Confidence 589999999999999999988775432 34555666666556666666666 99999999999999887777888999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
+||||||.+....+...+..++..++. ..+++++|||.++ .+......++.+...+....
T Consensus 133 iIiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~v~~saT~~~-~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 133 VILDEAHRLLDGGFGDQLEKLLKLLPK------NVQLLLLSATPPE-EIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EEEECHHHHhcCCcHHHHHHHHHhCCc------cceEEEEecCCch-hHHHHHHHhcCCCEEEeCCc
Confidence 999999999876678888888888754 5899999999986 88888888888766655543
No 91
>KOG0951|consensus
Probab=99.76 E-value=7.8e-18 Score=192.38 Aligned_cols=231 Identities=16% Similarity=0.240 Sum_probs=144.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-Cc-ccCCcc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HL-SLTHCR 363 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l-~l~~l~ 363 (651)
+.++++|+++|++.+...|.+-...+ +|+|.-++|......+. -++.+|+|+||+...-.-+++ .. ..+-++
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~---GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvr 439 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPL---GITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVR 439 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhcccc---CcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHH
Confidence 68999999999998777665555444 49999999987643221 135799999999985444432 22 235689
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccCCe-----------------
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT----------------- 425 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~----------------- 425 (651)
++||||.|.+-| ..++.++.|..+.... ......++++++|||+|+ -.+.+.-+..+|.
T Consensus 440 LlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq 516 (1674)
T KOG0951|consen 440 LLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQ 516 (1674)
T ss_pred HHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccce
Confidence 999999998765 4677777776554322 122236899999999984 4554443332221
Q ss_pred EEEccCCCCc----------------cCceEEEEEEeCcchH--------------------------------------
Q psy8712 426 WVDLKGEDAV----------------PETVHHVVVKIDPQQD-------------------------------------- 451 (651)
Q Consensus 426 ~i~~~~~~~~----------------~~~i~~~~~~~~~~~~-------------------------------------- 451 (651)
.|.+...+.. ...=+|++++|.++++
T Consensus 517 ~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~ 596 (1674)
T KOG0951|consen 517 YIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQ 596 (1674)
T ss_pred EeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhc
Confidence 1222211110 0011567777765541
Q ss_pred --------------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEE----eCC------CCChhh
Q psy8712 452 --------------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----MTL------PDDKAN 495 (651)
Q Consensus 452 --------------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~dl------P~s~~~ 495 (651)
...+.++.....+.+++|..+++|++.|.-+++|- ||. +.++.+
T Consensus 597 ~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~d 676 (1674)
T KOG0951|consen 597 AKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLD 676 (1674)
T ss_pred ccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHH
Confidence 11111233334555667777788999998776663 555 457899
Q ss_pred hhhhcCccccCCCc--eEEEEeeeCCccccccc
Q psy8712 496 YVHRIGRVGRAERM--GLAISLVSTVPEKVWYH 526 (651)
Q Consensus 496 YihRiGR~GR~g~~--G~ai~lv~~~de~~~~~ 526 (651)
-+||.||+||.+.. |..|. ++...|..+|.
T Consensus 677 v~qmlgragrp~~D~~gegii-it~~se~qyyl 708 (1674)
T KOG0951|consen 677 VMQMLGRAGRPQYDTCGEGII-ITDHSELQYYL 708 (1674)
T ss_pred HHHHHhhcCCCccCcCCceee-ccCchHhhhhH
Confidence 99999999997654 44443 33334444443
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=6.7e-17 Score=187.54 Aligned_cols=118 Identities=19% Similarity=0.293 Sum_probs=97.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++++.+|.++|.+|.+..+........ -.+.+++|+.+... ++.++|+|.+.|.+++..+...+..+.+|
T Consensus 164 rviYTsPIKALsNQKyrdl~~~fgdv~---~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~V 233 (1041)
T COG4581 164 RVIYTSPIKALSNQKYRDLLAKFGDVA---DMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWV 233 (1041)
T ss_pred ceEeccchhhhhhhHHHHHHHHhhhhh---hhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceE
Confidence 589999999999999988765432111 23467788777543 57999999999999999998889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
|+||+|.|-+...+...+.++-.+|. ..|++++|||++ +-.+|..++-
T Consensus 234 iFDEvHyi~D~eRG~VWEE~Ii~lP~------~v~~v~LSATv~--N~~EF~~Wi~ 281 (1041)
T COG4581 234 VFDEVHYIGDRERGVVWEEVIILLPD------HVRFVFLSATVP--NAEEFAEWIQ 281 (1041)
T ss_pred EEEeeeeccccccchhHHHHHHhcCC------CCcEEEEeCCCC--CHHHHHHHHH
Confidence 99999999998888888999999998 689999999998 5677777663
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.5e-16 Score=182.78 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=73.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC-Cccc----
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG-HLSL---- 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~-~l~l---- 359 (651)
.++||+||++||.|.++++..+.++++ +++.+++||.+...+.... .+||++|||++| .|+++.+ .+++
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~lG---Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v 199 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFLG---LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKV 199 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhh
Confidence 488999999999999999999999886 9999999999887776554 589999999999 9999877 3444
Q ss_pred -CCcceEeeccchhhh
Q psy8712 360 -THCRFFVLDEADGLL 374 (651)
Q Consensus 360 -~~l~~lViDEaD~ll 374 (651)
..+.++||||||.||
T Consensus 200 ~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 200 QRELNFAIVDEVDSIL 215 (896)
T ss_pred ccccceEEeccHhhhh
Confidence 589999999999876
No 94
>KOG0948|consensus
Probab=99.72 E-value=1.9e-17 Score=181.26 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=96.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+-+|-++|.+|-|+.+..=.+ .|.+.+|+..... .+..+|+|.+.|..++-++.-.++.+..+
T Consensus 174 RVIYTSPIKALSNQKYREl~~EF~-------DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWV 239 (1041)
T KOG0948|consen 174 RVIYTSPIKALSNQKYRELLEEFK-------DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWV 239 (1041)
T ss_pred eEEeeChhhhhcchhHHHHHHHhc-------ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeE
Confidence 789999999999999988764332 3567888887544 47899999999999999998889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
|+||+|-|-|...+-..+.-+-.||. +.+++++|||+| +..+|++|+.
T Consensus 240 IFDEIHYMRDkERGVVWEETIIllP~------~vr~VFLSATiP--NA~qFAeWI~ 287 (1041)
T KOG0948|consen 240 IFDEIHYMRDKERGVVWEETIILLPD------NVRFVFLSATIP--NARQFAEWIC 287 (1041)
T ss_pred EeeeehhccccccceeeeeeEEeccc------cceEEEEeccCC--CHHHHHHHHH
Confidence 99999999987777677777778888 799999999998 6788888764
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.3e-16 Score=181.08 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=73.5
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------ccc
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LSL 359 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l 359 (651)
+-|++||.+||.|.++++..+.++++ +++.+++|+.+..++.... .+||++|||++| .|+++.+. +.+
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~LG---lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~ 199 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFLG---LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQ 199 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcC---CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcc
Confidence 56999999999999999999999886 9999999999988877765 489999999999 89998764 346
Q ss_pred CCcceEeeccchhhh
Q psy8712 360 THCRFFVLDEADGLL 374 (651)
Q Consensus 360 ~~l~~lViDEaD~ll 374 (651)
+.+.++||||||.||
T Consensus 200 r~~~~aIvDEaDsiL 214 (830)
T PRK12904 200 RGLNYAIVDEVDSIL 214 (830)
T ss_pred cccceEEEechhhhe
Confidence 889999999999876
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=2.3e-16 Score=180.36 Aligned_cols=84 Identities=12% Similarity=0.246 Sum_probs=68.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
++-|++||--||.|-++.+..+...++ +++.++.++.+..+..... .+||+.||...+ .|+++.+. ..
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~LG---l~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v 197 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWLG---LTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMV 197 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhcC---CeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhh
Confidence 678999999999999999999999886 9999999887776665544 579999999888 45665431 12
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.++
T Consensus 198 ~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 198 QRPLNYAIVDEVDSIL 213 (796)
T ss_pred ccCcceeeeccchhee
Confidence 4678899999999765
No 97
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.65 E-value=5e-17 Score=147.74 Aligned_cols=114 Identities=43% Similarity=0.693 Sum_probs=100.5
Q ss_pred CceeEEEEEeccCCceeeccccccc---cc--cCCCCCCCCCcCCCC-ccCCCcccCccCcccCC-CcccccccccCCce
Q psy8712 129 RGKYYYEATVTDEGLCRVGWSTSQA---VR--DLGTDRFGFGFGGTG-KKSNNKQFDNYGEAFGM-HDVIGCLLDLDNMT 201 (651)
Q Consensus 129 ~~~~~~e~~~~~~~~~~~~~~~~~~---~~--~~g~~~~~~~~gg~~-~ks~~~~~~~~g~~~~~-~d~ig~~~~~~~~~ 201 (651)
+|||||||+|.+.+.+++||++... .. -+|.+..+|+|.+.+ ++.++.....++.++.. +|+|||+||+++|+
T Consensus 1 sG~~YwEV~v~~~~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~~~g~ 80 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDLDNGE 80 (124)
T ss_dssp SSEEEEEEEETGGCTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEETTTTE
T ss_pred CcCEEEEEEEecCcCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEeecccE
Confidence 5899999999999999999999999 22 288888999999999 78788888999999998 99999999999999
Q ss_pred eeeeccCcccc-cccc-cchhhhhccCcchhhcc-ccccccccCCCC
Q psy8712 202 VAFTKNGQHLG-LAFN-ISQQLKNSAFYPAVVLK-NAEMSFNFGATP 245 (651)
Q Consensus 202 ~~~~~ng~~~g-~af~-~~~~~~~~~~~p~~~~k-~~~~~~~f~~~~ 245 (651)
|+|++||+.++ .+|+ .+.. ..+||+|.+. +.++.+|||+.|
T Consensus 81 l~F~~ng~~~~~~~f~~~~~~---~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 81 LSFYKNGKFLGIYAFTDIDFS---EPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp EEEEETTEEEEEEEEESCTTS---SSBEEEEEEESTSEEEEEEEC--
T ss_pred EEEEECCccceeEEEECCCCC---CcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999999 7776 4433 7999999999 589999999875
No 98
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.63 E-value=2.2e-16 Score=143.38 Aligned_cols=113 Identities=42% Similarity=0.693 Sum_probs=99.1
Q ss_pred CceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCCCC-ccCCCcccCccCcccCC-CcccccccccCCcee
Q psy8712 129 RGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGGTG-KKSNNKQFDNYGEAFGM-HDVIGCLLDLDNMTV 202 (651)
Q Consensus 129 ~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg~~-~ks~~~~~~~~g~~~~~-~d~ig~~~~~~~~~~ 202 (651)
+|+|||||+|.+++.++|||++....+ .+|.+..||+|.+.+ ++-++.....|+.+|.. +|+|||+||+++|+|
T Consensus 1 sG~~YwEV~v~~~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~~g~l 80 (122)
T smart00449 1 SGRHYFEVEIFDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLEAGTI 80 (122)
T ss_pred CCcEEEEEEEcCCCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECCCCEE
Confidence 589999999999999999999998873 399999999999987 77777777889999997 999999999999999
Q ss_pred eeeccCccc-ccccccchhhhhccCcchhhcccc-ccccccCC
Q psy8712 203 AFTKNGQHL-GLAFNISQQLKNSAFYPAVVLKNA-EMSFNFGA 243 (651)
Q Consensus 203 ~~~~ng~~~-g~af~~~~~~~~~~~~p~~~~k~~-~~~~~f~~ 243 (651)
+|++||+.+ +.+|..-. -.+.+||++.+.+. ...+||+.
T Consensus 81 ~F~~ng~~~~~~~f~~~~--~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 81 SFYKNGKYLHGLAFFDVK--FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEECCCEeeeEEEeccC--CCCcEeeEEEcCCCCEEEEEecC
Confidence 999999999 88885432 34589999999886 57888874
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.62 E-value=1.5e-14 Score=173.92 Aligned_cols=113 Identities=16% Similarity=0.034 Sum_probs=70.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-----CCccc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-----GHLSL 359 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-----~~l~l 359 (651)
.++|||+|+++|+.|..+.|+.+.... ......+++....... ......+|+|+|...+...+.. ....+
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~---~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~ 538 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEG---DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPV 538 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhccccc---ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCC
Confidence 379999999999999999998764211 0111111111111111 1123579999999998775432 12456
Q ss_pred CCcceEeeccchhhhh---------cc------chHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 360 THCRFFVLDEADGLLK---------QG------YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~---------~g------f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
...++||+||||+-.. .+ +....+.++..+. .-.|+||||...
T Consensus 539 ~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--------A~~IGLTATP~r 596 (1123)
T PRK11448 539 DQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--------AVKIGLTATPAL 596 (1123)
T ss_pred CcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--------ccEEEEecCCcc
Confidence 7889999999998531 01 1344566666442 467999999753
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=1.2e-14 Score=160.47 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=40.3
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
..+.++...++..|+|+|+++++|......|...|+||+||.=|
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 36677777888889999999999999999999999999999999
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.55 E-value=2.1e-13 Score=160.87 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=49.9
Q ss_pred cceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 463 ~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
..++.+|+...+|+|++.+++|||||+|.+++.|.||+||+||.|+++.+..++..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 55677888899999999999999999999999999999999999999986655543
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=4.8e-13 Score=153.76 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=71.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC-Cccc----
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG-HLSL---- 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~-~l~l---- 359 (651)
.+.||+|+++||.|..+++..+..+++ +++.++.++.+........ .+||++|||+++ .|+++.+ .+..
T Consensus 125 ~VhIvT~ndyLA~RD~e~m~~l~~~lG---lsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~v 199 (908)
T PRK13107 125 GVHVITVNDYLARRDAENNRPLFEFLG---LTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERV 199 (908)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC---CeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhh
Confidence 389999999999999999999999986 9999999998864433221 689999999999 8998876 3343
Q ss_pred -CCcceEeeccchhhh
Q psy8712 360 -THCRFFVLDEADGLL 374 (651)
Q Consensus 360 -~~l~~lViDEaD~ll 374 (651)
..+.++||||||.++
T Consensus 200 qr~~~~aIvDEvDsiL 215 (908)
T PRK13107 200 QRPLHYALIDEVDSIL 215 (908)
T ss_pred ccccceeeecchhhhc
Confidence 788999999999876
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.7e-12 Score=146.57 Aligned_cols=105 Identities=15% Similarity=0.237 Sum_probs=74.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH----hccCCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV----LSSGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~----L~~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.++|||+|-..|-.|+.+.|+.... .++..+.++.+..+..+. ....+.|||||-..+ ...++
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rFg------~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~ 312 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARFG------AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFK 312 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHhC------CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchh
Confidence 4899999999999999999987664 677778887765444433 335689999994322 34689
Q ss_pred CcceEeeccchhhhh---ccc---hHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 361 HCRFFVLDEADGLLK---QGY---GNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 361 ~l~~lViDEaD~ll~---~gf---~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++.+|||||-|.-.- .+. ..++--...... ++++|+-|||.+
T Consensus 313 ~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~-------~~pvvLgSATPS 360 (730)
T COG1198 313 NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE-------NAPVVLGSATPS 360 (730)
T ss_pred hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh-------CCCEEEecCCCC
Confidence 999999999995431 122 223333333332 589999999964
No 104
>KOG0950|consensus
Probab=99.45 E-value=5.8e-13 Score=150.92 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=126.1
Q ss_pred CeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC--CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCc
Q psy8712 315 KIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG--GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392 (651)
Q Consensus 315 ~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~--~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~ 392 (651)
++.+...+|..+.... .+.-+|.|+|-|+-+.++.+ ..-+++.+.+||+||-|.+.+.+.+..++.++..+--.
T Consensus 297 G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred CCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 3777666666554433 23468999999988765543 12246788999999999999988888888777654322
Q ss_pred cCCCCceeEEEEeeccChHHHHHHHHHhcc-------CCeE-----------EEccC---------------CCCccCce
Q psy8712 393 TSDGKRLQMIVCSATLHDFDVKKMAERLMY-------FPTW-----------VDLKG---------------EDAVPETV 439 (651)
Q Consensus 393 ~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-------~p~~-----------i~~~~---------------~~~~~~~i 439 (651)
.... ..|+|++|||+++ +..+..++-. .|+. +.... ....++.+
T Consensus 373 ~~~~-~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~ 449 (1008)
T KOG0950|consen 373 NLET-SVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHL 449 (1008)
T ss_pred cccc-ceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcce
Confidence 1111 3789999999984 4444433210 1111 00100 00011111
Q ss_pred -----------EEEEEEeCcchHH----------------------HHHHH-----------------------------
Q psy8712 440 -----------HHVVVKIDPQQDE----------------------TWGRL----------------------------- 457 (651)
Q Consensus 440 -----------~~~~~~~~~~~~~----------------------~~~~l----------------------------- 457 (651)
...+++|++++.. .|...
T Consensus 450 v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHh 529 (1008)
T KOG0950|consen 450 VGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHH 529 (1008)
T ss_pred eeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecc
Confidence 2356667665310 01111
Q ss_pred --------------hhccccceeeccccccCCCCCCCCCEEEEeCC----CCChhhhhhhcCccccCCC--ceEEEEeee
Q psy8712 458 --------------RSHIQTDGVHARDNARPGIDISGLPFIINMTL----PDDKANYVHRIGRVGRAER--MGLAISLVS 517 (651)
Q Consensus 458 --------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl----P~s~~~YihRiGR~GR~g~--~G~ai~lv~ 517 (651)
++......+.+|..++.|++.|..+++|-.-. +.+.-.|.|++|||||+|- .|.+|+++.
T Consensus 530 aGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k 609 (1008)
T KOG0950|consen 530 AGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIK 609 (1008)
T ss_pred cccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEee
Confidence 12222333445666777999999888886443 3477899999999999974 788999999
Q ss_pred CCcccccc
Q psy8712 518 TVPEKVWY 525 (651)
Q Consensus 518 ~~de~~~~ 525 (651)
+.+.+.|.
T Consensus 610 ~~e~~~~~ 617 (1008)
T KOG0950|consen 610 SSEKKRVR 617 (1008)
T ss_pred ccchhHHH
Confidence 88776665
No 105
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.41 E-value=6.6e-12 Score=143.11 Aligned_cols=88 Identities=22% Similarity=0.344 Sum_probs=60.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.+++||+||..|+.|+++.+++|+.......+.+. ..+..+.++.. ..+.+ +.||+|+|..-|...+.. +.-.
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~ 202 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKL 202 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hccc
Confidence 47999999999999999999999976553344444 34443443333 33333 689999998655443321 1113
Q ss_pred CcceEeeccchhhhh
Q psy8712 361 HCRFFVLDEADGLLK 375 (651)
Q Consensus 361 ~l~~lViDEaD~ll~ 375 (651)
+++++++|++|.++.
T Consensus 203 kFdfifVDDVDA~Lk 217 (1187)
T COG1110 203 KFDFIFVDDVDAILK 217 (1187)
T ss_pred CCCEEEEccHHHHHh
Confidence 678999999998764
No 106
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.41 E-value=2.3e-12 Score=117.68 Aligned_cols=144 Identities=31% Similarity=0.418 Sum_probs=108.0
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM 331 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~ 331 (651)
++.+..+.+|+|||..+...+...... ....+++|++|++.|+.|..+.+...... .+.+..+.++.....+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE----GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC----CcEEEEEecCcchhHHH
Confidence 367899999999999988777333222 34579999999999999999998887754 26777777777666665
Q ss_pred HHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 332 SVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 332 ~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.......+|+++|++.+...+...........++||||+|.+.................. ..+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK------DRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc------cceEEEEeccC
Confidence 555678999999999998887776666678899999999999875443322112222222 57999999995
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.38 E-value=6.2e-11 Score=121.05 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=120.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++.|.+|....|..++..++.-.. +..+.+++|+.+...+ .+++|+|...|+.+- +.++++
T Consensus 146 ~vciASPRvDVclEl~~Rlk~aF~-----~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~l 206 (441)
T COG4098 146 RVCIASPRVDVCLELYPRLKQAFS-----NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLL 206 (441)
T ss_pred eEEEecCcccchHHHHHHHHHhhc-----cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEE
Confidence 566777887778877777765433 2677889998876543 589999988887644 467899
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH-----------HHHhccCC----eEEEcc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM-----------AERLMYFP----TWVDLK 430 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l-----------~~~~l~~p----~~i~~~ 430 (651)
||||+|..--. --+.+...++.-.+. +.-+|.+|||.+. ..+.- ..++.+.| ..+...
T Consensus 207 iIDEVDAFP~~-~d~~L~~Av~~ark~-----~g~~IylTATp~k-~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~ 279 (441)
T COG4098 207 IIDEVDAFPFS-DDQSLQYAVKKARKK-----EGATIYLTATPTK-KLERKILKGNLRILKLPARFHGKPLPVPKFVWIG 279 (441)
T ss_pred EEecccccccc-CCHHHHHHHHHhhcc-----cCceEEEecCChH-HHHHHhhhCCeeEeecchhhcCCCCCCCceEEec
Confidence 99999965321 112233333333221 4678999999875 33321 12222222 222111
Q ss_pred CCCC------ccC-----------ceEEEEEEeC---------------------------cchHHHHHHHhhcccccee
Q psy8712 431 GEDA------VPE-----------TVHHVVVKID---------------------------PQQDETWGRLRSHIQTDGV 466 (651)
Q Consensus 431 ~~~~------~~~-----------~i~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~l 466 (651)
.-.. .+. +-.-++++++ +..+......++..+.+.+
T Consensus 280 ~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lL 359 (441)
T COG4098 280 NWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLL 359 (441)
T ss_pred cHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEE
Confidence 1100 000 0011222322 2222222233556677888
Q ss_pred eccccccCCCCCCCCCEEEE-eCCC-CChhhhhhhcCccccCCC--ceEEE
Q psy8712 467 HARDNARPGIDISGLPFIIN-MTLP-DDKANYVHRIGRVGRAER--MGLAI 513 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn-~dlP-~s~~~YihRiGR~GR~g~--~G~ai 513 (651)
..|..++||+.+|+|+++|. -.-+ .+-++.+|-.||+||.-. .|.++
T Consensus 360 iTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 360 ITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred EEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEE
Confidence 88999999999999997554 3322 467899999999999743 44444
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.35 E-value=4.4e-11 Score=138.70 Aligned_cols=173 Identities=24% Similarity=0.309 Sum_probs=111.2
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchh-hhhccc-hHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHH
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADG-LLKQGY-GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVK 414 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~-ll~~gf-~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~ 414 (651)
...|-+.|.|.|+..+..... |+.+++|||||||. -++..+ ...++.++...+. +..+|++|||+.. +
T Consensus 139 ~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~------DLKiIimSATld~---~ 208 (845)
T COG1643 139 RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD------DLKLIIMSATLDA---E 208 (845)
T ss_pred CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC------CceEEEEecccCH---H
Confidence 568999999999998876554 79999999999994 333222 1224455555554 4899999999965 5
Q ss_pred HHHHHhccCCeEEEccCCCCc----------cCc-----------------eEEEEEEeCcch--HHHHHHHh-------
Q psy8712 415 KMAERLMYFPTWVDLKGEDAV----------PET-----------------VHHVVVKIDPQQ--DETWGRLR------- 458 (651)
Q Consensus 415 ~l~~~~l~~p~~i~~~~~~~~----------~~~-----------------i~~~~~~~~~~~--~~~~~~l~------- 458 (651)
+|.+.|-.-| .+.+.+.... .+. --.+++|.+... +.....+.
T Consensus 209 rfs~~f~~ap-vi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~ 287 (845)
T COG1643 209 RFSAYFGNAP-VIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDD 287 (845)
T ss_pred HHHHHcCCCC-EEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCC
Confidence 5555443322 2333222110 000 011344443322 11111111
Q ss_pred ----------------------hccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhh
Q psy8712 459 ----------------------SHIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVH 498 (651)
Q Consensus 459 ----------------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~Yih 498 (651)
...+-.++.+|+.+..+|-||+|.+||.-++ |.|..+..|
T Consensus 288 ~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 288 LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 1111236778999999999999999997555 447788999
Q ss_pred hcCccccCCCceEEEEeeeCCcc
Q psy8712 499 RIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 499 RiGR~GR~g~~G~ai~lv~~~de 521 (651)
|.||+||- ..|.||-++++++.
T Consensus 368 RaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 368 RAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred hccccccC-CCceEEEecCHHHH
Confidence 99999998 67999999997543
No 109
>KOG4150|consensus
Probab=99.33 E-value=7.3e-12 Score=134.14 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=126.7
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcc----cCCcceEeeccchhhhhccchH----HHHHHHhcCCCcc
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS----LTHCRFFVLDEADGLLKQGYGN----LIDRMHKQIPKIT 393 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~----l~~l~~lViDEaD~ll~~gf~~----~i~~il~~lp~~~ 393 (651)
+.|.+......-.+.+..++.+.|..+...+-.+.+. +-...+++.||+|..+.. |.. +++.+++.+.-.
T Consensus 369 ~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F- 446 (1034)
T KOG4150|consen 369 SDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGF- 446 (1034)
T ss_pred ccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHH-
Confidence 4444444444555678999999998886644433332 345678999999976542 222 333333332211
Q ss_pred CCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcc------------------------
Q psy8712 394 SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ------------------------ 449 (651)
Q Consensus 394 ~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~------------------------ 449 (651)
..+.+.|++-+|||+.+ .++.....+ +...+.+...+-.|..-++++++-++.
T Consensus 447 ~~~~~~~~~~~~~~~K~-~~~~~~~~~--~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~ 523 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKD-RTRLRSELA--NLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ 523 (1034)
T ss_pred HhhcCcceEeCCCCcCC-HHHHHHHhc--CCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence 11236899999999986 555444433 222333333334444445555543321
Q ss_pred ------------hH-HHHHHH---------------------------hhc-------cccceeeccccccCCCCCCCCC
Q psy8712 450 ------------QD-ETWGRL---------------------------RSH-------IQTDGVHARDNARPGIDISGLP 482 (651)
Q Consensus 450 ------------~~-~~~~~l---------------------------~~~-------~~~~~l~~td~~~rGIDip~v~ 482 (651)
+- +++..+ ++. .+..++.+|+.+.-||||..++
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccce
Confidence 10 000000 111 2334566788999999999999
Q ss_pred EEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccc
Q psy8712 483 FIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 483 ~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~ 526 (651)
.|++.++|-|..++.|+.||+||..+...++.++...+-..+|.
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 99999999999999999999999999999999888777666664
No 110
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.26 E-value=1.4e-11 Score=118.90 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=68.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEE------------EEeCCccHHHHHHHhccCCcEEEECchhhHHHHh
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIREL------------LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS 353 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~------------~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~ 353 (651)
+++|++|+..|+.|..+.+..+.... .... ..............-....++++.|...+.....
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 127 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEK----YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIK 127 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTS----EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHH
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhh----hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcc
Confidence 58999999999999999997765432 1111 0111111122222334568999999999987664
Q ss_pred CCC-----------cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 354 GGH-----------LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 354 ~~~-----------l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
... .......+||+||||++....- ...++. .+ ...+|++|||..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-~~-------~~~~l~lTATp~ 183 (184)
T PF04851_consen 128 EEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-FK-------AAFILGLTATPF 183 (184)
T ss_dssp H---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-SS-------CCEEEEEESS-S
T ss_pred cccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-CC-------CCeEEEEEeCcc
Confidence 321 2245678999999999876431 344444 22 468999999975
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.26 E-value=3.3e-11 Score=141.09 Aligned_cols=223 Identities=16% Similarity=0.157 Sum_probs=122.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH-----h---------ccCCcEEEECchhhHH
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV-----L---------SSGVDIVVGTPGRMED 350 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~-----L---------~~~~dIlV~TP~rL~~ 350 (651)
++.+.+.|++.+..++++.++....... +......|.......... . .....+.++||-.+..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~---~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~ 323 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFS---VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILI 323 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccc---cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhh
Confidence 4789999999999999999998765432 111111222111110000 0 0124555666655444
Q ss_pred HHhC-CCcc-c--CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE
Q psy8712 351 LISG-GHLS-L--THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW 426 (651)
Q Consensus 351 ll~~-~~l~-l--~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~ 426 (651)
.... .... + =....+|+||+|.+-+......+..++..+... +..+|++|||+|+ ...+.......+...
T Consensus 324 ~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~-----g~~ill~SATlP~-~~~~~l~~~~~~~~~ 397 (733)
T COG1203 324 FSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA-----GVPVLLMSATLPP-FLKEKLKKALGKGRE 397 (733)
T ss_pred hhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhC-----CCCEEEEecCCCH-HHHHHHHHHHhcccc
Confidence 2111 1111 1 123589999999887653333444555544432 5799999999998 555555544432221
Q ss_pred EEcc-------------CC------CC--------cc---CceEEEEEEeCcch--HHHHHHHh----------------
Q psy8712 427 VDLK-------------GE------DA--------VP---ETVHHVVVKIDPQQ--DETWGRLR---------------- 458 (651)
Q Consensus 427 i~~~-------------~~------~~--------~~---~~i~~~~~~~~~~~--~~~~~~l~---------------- 458 (651)
+... .. .. .. ..-..+.+.+++.. .+.+..++
T Consensus 398 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~ 477 (733)
T COG1203 398 VVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLK 477 (733)
T ss_pred eeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchh
Confidence 1111 00 00 00 00012233333322 12222221
Q ss_pred -------------hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC--CceEEEEeeeCC
Q psy8712 459 -------------SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE--RMGLAISLVSTV 519 (651)
Q Consensus 459 -------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g--~~G~ai~lv~~~ 519 (651)
......++++|.+...|+|+. .+.+|-= +..+.+.+||.||++|.| ..|.++.+....
T Consensus 478 dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 478 DREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred hHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 334556677888888899986 5666544 444889999999999999 577777776653
No 112
>KOG0922|consensus
Probab=99.21 E-value=1.2e-09 Score=120.59 Aligned_cols=172 Identities=24% Similarity=0.334 Sum_probs=105.4
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhh-hhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHH
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL-LKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVK 414 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l-l~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~ 414 (651)
...|...|-|.|+..+.... .|++..+|||||||.= +..+ ....++++++.-+ ...+|++|||+.. .
T Consensus 140 ~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-------~LklIimSATlda---~ 208 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP-------DLKLIIMSATLDA---E 208 (674)
T ss_pred ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-------CceEEEEeeeecH---H
Confidence 36899999999987554332 3688999999999941 1100 1122444444433 3799999999963 4
Q ss_pred HHHHHhccCCeEEEccCCCCccC--------------------ceE------EEEEEeCcchH--HHHHHHh--------
Q psy8712 415 KMAERLMYFPTWVDLKGEDAVPE--------------------TVH------HVVVKIDPQQD--ETWGRLR-------- 458 (651)
Q Consensus 415 ~l~~~~l~~p~~i~~~~~~~~~~--------------------~i~------~~~~~~~~~~~--~~~~~l~-------- 458 (651)
.|.+.|. +...+.+.+.....+ .|+ ..++|....++ .....+.
T Consensus 209 kfS~yF~-~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 209 KFSEYFN-NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred HHHHHhc-CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 4555443 322233332211000 011 23444443321 1111110
Q ss_pred -------------------------hccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhh
Q psy8712 459 -------------------------SHIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKAN 495 (651)
Q Consensus 459 -------------------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~ 495 (651)
......++.+|+.+..-|-|++|.+||.-++ |-|..+
T Consensus 288 ~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkas 367 (674)
T KOG0922|consen 288 DCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKAS 367 (674)
T ss_pred cCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHH
Confidence 0112345667888888999999999997444 557888
Q ss_pred hhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 496 YVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 496 YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
-.||.||+||. ..|.|+-|+++++-
T Consensus 368 A~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 368 ANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred HhhhcccCCCC-CCceEEEeeeHHHH
Confidence 99999999998 57999999997543
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=9e-10 Score=124.43 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=67.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
++-|++||-.||.|-++++..+...++ +++.++.++.+..+..... .+||+.+|...+ .|+|+.+. ..
T Consensus 121 ~VhvvT~NdyLA~RDae~m~~ly~~LG---Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v 195 (764)
T PRK12326 121 RVHVITVNDYLARRDAEWMGPLYEALG---LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLV 195 (764)
T ss_pred CeEEEcCCHHHHHHHHHHHHHHHHhcC---CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhc
Confidence 578999999999999999999998886 9999999988876655554 489999999887 45555432 23
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.+|
T Consensus 196 ~R~~~faIVDEvDSiL 211 (764)
T PRK12326 196 SPNPDVAIIDEADSVL 211 (764)
T ss_pred CCccceeeecchhhhe
Confidence 4668899999999876
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.15 E-value=3e-10 Score=135.58 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=44.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHhhHH----hHhcCCceEeeecCCCCccceeehhhHH
Q psy8712 10 LPEIGKAVEEMDWLLPTDVQAEAIP----LILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 10 ~~~l~~~l~~~~~~~pt~iQ~~aip----~il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.+++.+.+...||. ++|.|.+.+. .+..|+++++.||||+|||+||++|++.
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~ 287 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALY 287 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHH
Confidence 35677888889997 7899998776 4557899999999999999999999986
No 115
>KOG2626|consensus
Probab=99.13 E-value=4.6e-11 Score=128.00 Aligned_cols=157 Identities=32% Similarity=0.623 Sum_probs=126.2
Q ss_pred ceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEe---ccCCceeecccccccccc--CCCCCC
Q psy8712 88 TWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATV---TDEGLCRVGWSTSQAVRD--LGTDRF 162 (651)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~~~~--~g~~~~ 162 (651)
++-|+-.+|....-|+.|.+ +.-..+++.=.|+++||. +|-.|||++| .|++-.|.|||...+.+. +|.|++
T Consensus 292 tv~l~~hdrA~ql~Is~drl--t~tgeKGy~MvRAshgv~-~G~WYFEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkf 368 (544)
T KOG2626|consen 292 TVNLSWHDRAEQLKISEDRL--TATGEKGYRMVRASHGVL-EGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKF 368 (544)
T ss_pred hhhhhhhcccccccccccce--eeecccceeeeeeccccc-ccceeEEEEeecCCCccceeeeccccccccccccccccc
Confidence 56666677777777766644 334567788899999998 8999999998 689999999999999999 999999
Q ss_pred CCCcCC-CCccCCCcccCccCcccCCCccccccccc--CC----------------------------------------
Q psy8712 163 GFGFGG-TGKKSNNKQFDNYGEAFGMHDVIGCLLDL--DN---------------------------------------- 199 (651)
Q Consensus 163 ~~~~gg-~~~ks~~~~~~~~g~~~~~~d~ig~~~~~--~~---------------------------------------- 199 (651)
||++-+ -|.|-|...=++|-..|+.||||||+|++ +.
T Consensus 369 sY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~ 448 (544)
T KOG2626|consen 369 SYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIK 448 (544)
T ss_pred cccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccC
Confidence 998865 36677777778999999999999999985 21
Q ss_pred --ceeeeeccCcccccccccchhhhhccCcchhhccc-cccccccCCCCCCCCC
Q psy8712 200 --MTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKN-AEMSFNFGATPFKHEP 250 (651)
Q Consensus 200 --~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~-~~~~~~f~~~~~~~~~ 250 (651)
..|.|-|||...|.||+---. .-..||||.+=+ ++++||||.. |+++|
T Consensus 449 pgS~I~f~KNG~~qG~Ay~ni~~--~G~YyPaIS~yks~tv~~nfGP~-F~~~p 499 (544)
T KOG2626|consen 449 PGSEIEFFKNGVSQGVAYENIYK--AGAYYPAISIYKSCTVKFNFGPQ-FRYPP 499 (544)
T ss_pred CCceEEEeecccchhhhhhhhhc--cccccceeeecccceEEEecccc-ccCCc
Confidence 257889999999999985321 237899998866 9999999853 55554
No 116
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.13 E-value=3e-10 Score=129.01 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=30.6
Q ss_pred cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh
Q psy8712 336 SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 336 ~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
..+||||++..-|...++.+.-.+....++||||||.+.+
T Consensus 181 ~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 3579999999888776554332456689999999999875
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=2.6e-09 Score=123.44 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=68.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
++-|++||.-||.|-++++..+..+++ +++.++.++.+..+...... +||++||..-+ .|+|+.+. ..
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~lG---l~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~v 199 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFLG---LSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKF 199 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhcccC---CEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhc
Confidence 578999999999999999999998886 99999998887766655554 89999999886 44454431 12
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
.+.+.+.||||+|.+|
T Consensus 200 qr~l~~aIVDEvDsiL 215 (913)
T PRK13103 200 QRELNFAVIDEVDSIL 215 (913)
T ss_pred ccccceeEechhhhee
Confidence 4789999999999875
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=1.9e-10 Score=133.10 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
.++.|+.+.||-|||.++++++.- ..-.+.-+-|++..--||..=.+++..+..+++ ++|.++..+.+....
T Consensus 151 h~G~IAEM~TGEGKTLvatlp~yL-----nAL~G~gVHvVTvNDYLA~RDaewm~p~y~flG---LtVg~i~~~~~~~~R 222 (1025)
T PRK12900 151 HSGKISEMATGEGKTLVSTLPTFL-----NALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHG---LSVGVILNTMRPEER 222 (1025)
T ss_pred hcCCccccCCCCCcchHhHHHHHH-----HHHcCCCcEEEeechHhhhhhHHHHHHHHHHhC---CeeeeeCCCCCHHHH
Confidence 468899999999999999887611 122344577889999999999999999888886 999999777666554
Q ss_pred HHHhccCCcEEEECchhh-HHHHhCCC------cccCCcceEeeccchhhh
Q psy8712 331 MSVLSSGVDIVVGTPGRM-EDLISGGH------LSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 331 ~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l~~l~~lViDEaD~ll 374 (651)
.... .+||..||..-+ .|+|+.+. +....+.+.||||+|.+|
T Consensus 223 r~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 223 REQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 4332 589999998877 55665432 234678899999999765
No 119
>KOG0924|consensus
Probab=99.09 E-value=2.9e-09 Score=116.77 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=48.1
Q ss_pred cceeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 463 TDGVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 463 ~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
..+|++|+.+..-|.||++.+||..+. |-|..+--||.|||||. ..|.||-++++...
T Consensus 624 RK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ay 699 (1042)
T KOG0924|consen 624 RKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTEDAY 699 (1042)
T ss_pred eeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhhHH
Confidence 356788999999999999999997554 55667778999999998 57999999997533
No 120
>KOG0949|consensus
Probab=99.04 E-value=4.9e-09 Score=119.03 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=76.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC---CcccCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG---HLSLTHC 362 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~---~l~l~~l 362 (651)
-+|.++||++|+.|+...+........ -.+...+.|....+-+.. .-+|+|+|+-|+.+..++.+. .-..+++
T Consensus 558 VVIyvaPtKaLVnQvsa~VyaRF~~~t--~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerI 633 (1330)
T KOG0949|consen 558 VVIYVAPTKALVNQVSANVYARFDTKT--FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERI 633 (1330)
T ss_pred EEEEecchHHHhhhhhHHHHHhhccCc--cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcc
Confidence 578999999999999877654432111 023334444444333332 226999999999999988773 3346899
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+++|+||+|++-...-.--.++++... .+.++++|||+.+
T Consensus 634 RyiIfDEVH~iG~~ed~l~~Eqll~li--------~CP~L~LSATigN 673 (1330)
T KOG0949|consen 634 RYIIFDEVHLIGNEEDGLLWEQLLLLI--------PCPFLVLSATIGN 673 (1330)
T ss_pred eEEEechhhhccccccchHHHHHHHhc--------CCCeeEEecccCC
Confidence 999999999987643333344444444 3789999999974
No 121
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.01 E-value=1.9e-09 Score=127.50 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=33.8
Q ss_pred CCCCCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHH
Q psy8712 21 DWLLPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
|| .+.+-|.+....| ..++.+++.|+||||||+||++|+++
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~ 287 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA 287 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH
Confidence 44 5899999955444 36788999999999999999999886
No 122
>KOG0923|consensus
Probab=98.97 E-value=3.7e-08 Score=108.18 Aligned_cols=168 Identities=23% Similarity=0.304 Sum_probs=99.9
Q ss_pred CcEEEECchhhHHHHhCCCcccCCcceEeeccchhh-hhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHH
Q psy8712 338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL-LKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415 (651)
Q Consensus 338 ~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l-l~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~ 415 (651)
.-|=++|-|.|+.-+.. ..+|.+...+||||||.= +... ....++.|.+.-| ...+++.|||+.. ..
T Consensus 356 TvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp-------dLKllIsSAT~DA---ek 424 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP-------DLKLLISSATMDA---EK 424 (902)
T ss_pred eeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-------cceEEeeccccCH---HH
Confidence 46778999999774432 234678899999999941 2111 1123444444433 4899999999954 55
Q ss_pred HHHHhccCCeEEEccCCCCc-----------------cCce---------EEEEEEeCcchH---------HHHHHH---
Q psy8712 416 MAERLMYFPTWVDLKGEDAV-----------------PETV---------HHVVVKIDPQQD---------ETWGRL--- 457 (651)
Q Consensus 416 l~~~~l~~p~~i~~~~~~~~-----------------~~~i---------~~~~~~~~~~~~---------~~~~~l--- 457 (651)
|...|-.-|+.. +.+.... -.+| -.++++..-.++ +....|
T Consensus 425 FS~fFDdapIF~-iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk 503 (902)
T KOG0923|consen 425 FSAFFDDAPIFR-IPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK 503 (902)
T ss_pred HHHhccCCcEEe-ccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc
Confidence 555443333321 1111100 0011 113333322211 111111
Q ss_pred ---------------------h---hccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhh
Q psy8712 458 ---------------------R---SHIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKAN 495 (651)
Q Consensus 458 ---------------------~---~~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~ 495 (651)
+ ...-..++.+|+.+..-|.|++|.+||.-++ |-|..+
T Consensus 504 i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 504 IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhh
Confidence 0 0011345667889999999999999997554 446677
Q ss_pred hhhhcCccccCCCceEEEEeeeC
Q psy8712 496 YVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 496 YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
-.||.||+||.| .|.|+-|++.
T Consensus 584 A~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 584 ANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred hhhhccccCCCC-CCceEEeech
Confidence 899999999985 6999999985
No 123
>KOG0920|consensus
Probab=98.94 E-value=3.1e-08 Score=115.09 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhh-hccchH-HHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL-KQGYGN-LIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll-~~gf~~-~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
...++.+|.|.|++.+.. .-.+..+.++|+||+|.=. +..|.- .++.++..-| ..++|++|||+..
T Consensus 264 ~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p-------~LkvILMSAT~da 331 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP-------DLKVILMSATLDA 331 (924)
T ss_pred ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC-------CceEEEeeeecch
Confidence 378999999999998877 4457899999999999532 223322 2333333333 5899999999963
No 124
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.89 E-value=1.5e-08 Score=114.64 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=55.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-----Cccc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-----HLSL 359 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-----~l~l 359 (651)
.++|+|+-.+.|+.|.+..+..+..... ..+...-..+.. .++|.|+|-.++...+... .+..
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~--~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~ 283 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGT--KMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGP 283 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCcc--ceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCC
Confidence 3799999999999999999887765432 122111111111 3799999999998776544 4456
Q ss_pred CCcceEeeccchhhh
Q psy8712 360 THCRFFVLDEADGLL 374 (651)
Q Consensus 360 ~~l~~lViDEaD~ll 374 (651)
...++|||||||+=+
T Consensus 284 g~FDlIvIDEaHRgi 298 (875)
T COG4096 284 GFFDLIVIDEAHRGI 298 (875)
T ss_pred CceeEEEechhhhhH
Confidence 679999999999854
No 125
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.87 E-value=5.5e-08 Score=115.94 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred eeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce--EEEEeeeCC--cccc
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG--LAISLVSTV--PEKV 523 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G--~ai~lv~~~--de~~ 523 (651)
|.++.....|||+..+++||+||+|-++..+.|++||+-|-|... .++.|++.. ++++
T Consensus 544 LLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkI 605 (1033)
T PLN03142 544 LLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKV 605 (1033)
T ss_pred EEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHH
Confidence 334555555999999999999999999999999999999999864 466677765 4444
No 126
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.83 E-value=1.8e-08 Score=116.78 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=97.0
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC--cchHHHHHHHhhccccceeeccccccCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID--PQQDETWGRLRSHIQTDGVHARDNARPG 475 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~td~~~rG 475 (651)
..++++|+.|.. ....+.+.+.... +.-.+++-+ ...+.....-.+.....++++++.+.+|
T Consensus 446 g~~viIf~~t~~--~ae~L~~~L~~~g--------------i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 446 GERVLVTTLTKR--MAEDLTDYLKELG--------------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred CCEEEEEeCCHH--HHHHHHHHHhhcc--------------eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 468888888864 5666666553321 222222221 2222222223345567888999999999
Q ss_pred CCCCCCCEEEEeCC-----CCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCC
Q psy8712 476 IDISGLPFIINMTL-----PDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQ 550 (651)
Q Consensus 476 IDip~v~~VIn~dl-----P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 550 (651)
+|+|++++||++|. |.+..+|+||+|||||. +.|.|++|++..+... .++.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~--------------------~~~~--- 565 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSM--------------------QKAI--- 565 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHH--------------------HHHH---
Confidence 99999999999985 78999999999999997 7899999998532211 1111
Q ss_pred cchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 551 VPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 551 ~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+|...+++||..+|.++..+|..+.
T Consensus 566 ------------------~~~~~~~~i~~~~~~~~~~~~~~~~ 590 (652)
T PRK05298 566 ------------------DETERRREIQIAYNEEHGITPKTIK 590 (652)
T ss_pred ------------------HHHHHHHHHHHHhhhccCCCChhHH
Confidence 6889999999999999998887653
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.81 E-value=3.6e-08 Score=114.55 Aligned_cols=107 Identities=13% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCC--CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGG--HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~--~l~l~ 360 (651)
.+++|||+|+.+|..|+.+.+..++... + .+..+...-...+.+ ..+|+|+|.+.+...+... .+...
T Consensus 293 ~~~vl~lvdR~~L~~Q~~~~f~~~~~~~----~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~ 363 (667)
T TIGR00348 293 NPKVFFVVDRRELDYQLMKEFQSLQKDC----A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVD 363 (667)
T ss_pred CCeEEEEECcHHHHHHHHHHHHhhCCCC----C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCC
Confidence 3589999999999999999999886311 1 111122222233333 4689999999997644321 11111
Q ss_pred Cc-ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 361 HC-RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 361 ~l-~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
+- -+||+||||+.-...+. ..+.+.+|. ...++||||.-
T Consensus 364 ~~~~lvIvDEaHrs~~~~~~---~~l~~~~p~-------a~~lGfTaTP~ 403 (667)
T TIGR00348 364 RKEVVVIFDEAHRSQYGELA---KNLKKALKN-------ASFFGFTGTPI 403 (667)
T ss_pred CCCEEEEEEcCccccchHHH---HHHHhhCCC-------CcEEEEeCCCc
Confidence 11 28999999986432222 222345554 68999999974
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=2.9e-07 Score=105.85 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=64.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------ccc
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LSL 359 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l 359 (651)
+-|++..--||..=.+++..+..+++ ++|.++..+.+..+..... .+||+.||...| .|+|+.+. ...
T Consensus 122 VhVVTvNdYLA~RDae~mg~vy~fLG---LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vq 196 (925)
T PRK12903 122 VIVSTVNEYLAERDAEEMGKVFNFLG---LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQ 196 (925)
T ss_pred eEEEecchhhhhhhHHHHHHHHHHhC---CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcC
Confidence 56778888899988899988888886 9999998887766655444 489999999887 56666542 224
Q ss_pred CCcceEeeccchhhh
Q psy8712 360 THCRFFVLDEADGLL 374 (651)
Q Consensus 360 ~~l~~lViDEaD~ll 374 (651)
..+.+.||||+|.+|
T Consensus 197 R~~~faIVDEVDSIL 211 (925)
T PRK12903 197 RGLNFCLIDEVDSIL 211 (925)
T ss_pred cccceeeeccchhee
Confidence 678899999999765
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.73 E-value=8.9e-09 Score=85.61 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=45.5
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+......++.+|+.+..|||+|++++||++++|.++..|.|++||+||.|
T Consensus 29 f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 29 FNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred hhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 44445588999999999999999999999999999999999999999986
No 130
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.70 E-value=7.6e-08 Score=111.01 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=74.6
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHhhccccceeeccccccCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLRSHIQTDGVHARDNARPG 475 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rG 475 (651)
..++++|+.|.. ....+.+.+.... +.-.+.+- +..++.....-.+.....++++++.+.+|
T Consensus 442 g~~vLIf~~tk~--~ae~L~~~L~~~g--------------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 442 NERVLVTTLTKK--MAEDLTDYLKELG--------------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred CCEEEEEECCHH--HHHHHHHHHhhhc--------------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 467888888763 5666665543221 11111211 12222222233445567889999999999
Q ss_pred CCCCCCCEEEEeC-----CCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 476 IDISGLPFIINMT-----LPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 476 IDip~v~~VIn~d-----lP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+|+|++++||++| .|.+..+|+||+|||||. ..|.+++++...
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 9999999999999 899999999999999998 689999999864
No 131
>KOG0926|consensus
Probab=98.68 E-value=3.2e-07 Score=102.74 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=84.9
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCC-eEEEEeCCHHHHHHHHHH-HHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAP-QAIIIEPSRELAEQTFNQ-IIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p-~aLIL~PTreLa~Qi~~~-~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
..-.|+|+.||+|||+-....+............| -+=|--|.|--|.-+.+. ...++. ++ ..+....-+.|.-
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~-~eVsYqIRfd~ti-- 346 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LG-SEVSYQIRFDGTI-- 346 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cc-cceeEEEEecccc--
Confidence 34589999999999997665553333322222334 444556777555544443 233433 11 1233333333322
Q ss_pred HHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh-----ccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 329 DQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK-----QGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 329 ~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~-----~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
.....|..+|-|.|+.-+.+. +.|.+...|||||||.=.= -|...-+-.+-..+.+....-.....|+
T Consensus 347 ------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 347 ------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred ------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 235689999999998877644 4478889999999994210 0111111111111111001112478999
Q ss_pred EeeccChHHHHHHH
Q psy8712 404 CSATLHDFDVKKMA 417 (651)
Q Consensus 404 ~SATl~~~~v~~l~ 417 (651)
+|||+ .|.+|.
T Consensus 420 MSATL---RVsDFt 430 (1172)
T KOG0926|consen 420 MSATL---RVSDFT 430 (1172)
T ss_pred EeeeE---Eecccc
Confidence 99998 455655
No 132
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.65 E-value=1.5e-07 Score=98.63 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCcHHHHh----hHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAE----AIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~----aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|+|.|.+ ++..+..|+++++.||||+|||++|++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 47999999 44555688999999999999999999999986543
No 133
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.65 E-value=1.5e-07 Score=98.63 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCcHHHHh----hHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAE----AIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~----aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|+|.|.+ ++..+..|+++++.||||+|||++|++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 47999999 44555688999999999999999999999986543
No 134
>KOG0925|consensus
Probab=98.63 E-value=2e-06 Score=92.00 Aligned_cols=54 Identities=31% Similarity=0.479 Sum_probs=43.4
Q ss_pred eeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
++++|+.+.--+-+++|-+||.-++ |-|..+--||.||+||. +.|.|+.|++++
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 3445666666888889999997665 55777889999999998 899999999974
No 135
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.62 E-value=3.3e-06 Score=92.03 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=109.8
Q ss_pred CCcEEEECchhhHHHHhC-----C-CcccCCcceEeeccchhhhhccchHHHHHHHhc---CCCccCC------------
Q psy8712 337 GVDIVVGTPGRMEDLISG-----G-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQ---IPKITSD------------ 395 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~-----~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~---lp~~~~~------------ 395 (651)
..||||++|=-|...+.. . .--|++|.++|||.||.|+-+ ..+++..+++. .|+...+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 489999999988777764 1 223799999999999988753 23445555544 4432110
Q ss_pred ---CCceeEEEEeeccChHHHHHHHHHhccCC-eEEEccCC-------CCccCceEEEEEEeCcch-----H--------
Q psy8712 396 ---GKRLQMIVCSATLHDFDVKKMAERLMYFP-TWVDLKGE-------DAVPETVHHVVVKIDPQQ-----D-------- 451 (651)
Q Consensus 396 ---~~~~Q~l~~SATl~~~~v~~l~~~~l~~p-~~i~~~~~-------~~~~~~i~~~~~~~~~~~-----~-------- 451 (651)
..=+|+|++|+..++ ++..+....+.|. ..+.+... ......|.|++..++... +
T Consensus 210 g~a~~~RQtii~S~~~~p-e~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTP-EINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred CcchheeEeEEecCCCCH-HHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 122799999999998 9999998866553 23333222 134446677777654332 1
Q ss_pred HHHHHHh-hccccceee--------------------------------------------------cccc--ccCCCCC
Q psy8712 452 ETWGRLR-SHIQTDGVH--------------------------------------------------ARDN--ARPGIDI 478 (651)
Q Consensus 452 ~~~~~l~-~~~~~~~l~--------------------------------------------------~td~--~~rGIDi 478 (651)
..+..+. .......+. -|.+ .-+-..|
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 1112222 111011110 0000 1127788
Q ss_pred CCCCEEEEeCCCCChhhhhhhcCccccCCC------ceEEEEeeeC
Q psy8712 479 SGLPFIINMTLPDDKANYVHRIGRVGRAER------MGLAISLVST 518 (651)
Q Consensus 479 p~v~~VIn~dlP~s~~~YihRiGR~GR~g~------~G~ai~lv~~ 518 (651)
.++.+||.|.+|..+.-|-.-+.-.+.... ...|.++++.
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 899999999999999888776654444332 5677777776
No 136
>KOG2340|consensus
Probab=98.55 E-value=1.2e-06 Score=94.55 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=86.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeE----------------------------EEEeCCccH-------
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRE----------------------------LLIIGGVNV------- 327 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v----------------------------~~l~Gg~~~------- 327 (651)
..|.+||+||+||-|..+.+.+..+....+.....| .++.|..+.
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 468999999999999999998887732111100000 011122111
Q ss_pred -HHHHHHhc---cCCcEEEECchhhHHHHhC-----CCc-ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCC-
Q psy8712 328 -KDQMSVLS---SGVDIVVGTPGRMEDLISG-----GHL-SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG- 396 (651)
Q Consensus 328 -~~q~~~L~---~~~dIlV~TP~rL~~ll~~-----~~l-~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~- 396 (651)
....-.|. ...|||||+|--|.-++.+ ..+ -++.|.++|||-||.|+.+. .+.+..|+..|.......
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCccccc
Confidence 11111111 2589999999887655542 122 26899999999999998653 455677776654331110
Q ss_pred -----------------CceeEEEEeeccChHHHHHHHHHhccC
Q psy8712 397 -----------------KRLQMIVCSATLHDFDVKKMAERLMYF 423 (651)
Q Consensus 397 -----------------~~~Q~l~~SATl~~~~v~~l~~~~l~~ 423 (651)
.-+|+++||+--.+ .+..+....+.|
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~-~~nS~fn~~c~N 493 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHP-LFNSLFNQYCQN 493 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccH-HHHHHHHHhhhh
Confidence 12689999998876 787777776654
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.54 E-value=5.2e-07 Score=108.72 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=35.9
Q ss_pred CCCcHHHHhhHHhHh----cCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 23 LLPTDVQAEAIPLIL----GGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 23 ~~pt~iQ~~aip~il----~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
-.+.|-|.+.+..+. .++.+++.|+||+|||+||++|++....
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~ 302 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK 302 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh
Confidence 378999999666554 6788999999999999999999986443
No 138
>KOG2243|consensus
Probab=98.53 E-value=7.3e-08 Score=109.95 Aligned_cols=119 Identities=34% Similarity=0.620 Sum_probs=92.4
Q ss_pred cccccCCceeEEEEEeccCCceeecccccccccc--CCCCCCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCc
Q psy8712 123 NKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRD--LGTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNM 200 (651)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~ 200 (651)
++.|. .||+|||..+...|--||||+-+.|-.| +|.|..-|.|-|.--.-+-.--+.||..+..|||+||++|++..
T Consensus 1100 syavk-agkwyfefe~vt~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg~~~~grswq~gdvvgcmi~l~d~ 1178 (5019)
T KOG2243|consen 1100 SYAVK-AGKWYFEFETVTAGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQGNEHFGRSWQAGDVVGCMIDLDDA 1178 (5019)
T ss_pred hheee-ccceEEEEEEeeccceeecccCCCCCcchhhCCccceeeeccchhhhhhccccccccccCCCCeEEEEEecccc
Confidence 44555 7999999999999999999999999888 99999999998875444444568899999999999999999999
Q ss_pred eeeeeccCccc----c--cccccchhhhhccCcchhhccccc-cccccCCC
Q psy8712 201 TVAFTKNGQHL----G--LAFNISQQLKNSAFYPAVVLKNAE-MSFNFGAT 244 (651)
Q Consensus 201 ~~~~~~ng~~~----g--~af~~~~~~~~~~~~p~~~~k~~~-~~~~f~~~ 244 (651)
+.-|+-||..+ | .||.- .=-...|-|.||+--+. ...|||-.
T Consensus 1179 sm~ftlngeili~~~gselaf~d--~di~~gfipic~lg~aqigrmn~g~d 1227 (5019)
T KOG2243|consen 1179 SMIFTLNGEILIDDKGSELAFAD--FDIEDGFIPICCLGLAQIGRMNFGKD 1227 (5019)
T ss_pred eEEEEEcCeEEEcCCCCeeeecc--ccccCCceeeeehhhHhhcccccCCc
Confidence 99999999985 2 22221 11234567777766543 34555543
No 139
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.51 E-value=2.1e-07 Score=97.20 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=92.9
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...+....+..+.+.+...|.|||..++..+..............+|||+|. .+..|..+++.++.... .+++..+
T Consensus 16 ~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~---~~~v~~~ 91 (299)
T PF00176_consen 16 EEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD---SLRVIIY 91 (299)
T ss_dssp --TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT----TS-EEEE
T ss_pred hcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc---ccccccc
Confidence 3456667788899999999999999888776422221112222359999999 77788888888776422 2666666
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHh---CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS---GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~---~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.|...............+++|+|.+.+..... ...+.--+.++||+||+|.+-+ ........+..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~~~l~~l~~------- 162 (299)
T PF00176_consen 92 DGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRYKALRKLRA------- 162 (299)
T ss_dssp SSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHHHHHHCCCE-------
T ss_pred ccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc--cccccccccccccc-------
Confidence 66552333333334568999999988871110 0111123478999999999843 22334444444543
Q ss_pred eeEEEEeeccChHHHHHH
Q psy8712 399 LQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l 416 (651)
...+++|||.-.....++
T Consensus 163 ~~~~lLSgTP~~n~~~dl 180 (299)
T PF00176_consen 163 RYRWLLSGTPIQNSLEDL 180 (299)
T ss_dssp CEEEEE-SS-SSSGSHHH
T ss_pred ceEEeecccccccccccc
Confidence 577899999644333433
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.42 E-value=1.4e-06 Score=79.05 Aligned_cols=58 Identities=36% Similarity=0.503 Sum_probs=51.8
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEe
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~l 515 (651)
........+.++..+..|+|+|++++||.++.|.+...|+|++||++|.|..|.++.+
T Consensus 74 f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 74 FREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 4444477888999999999999999999999999999999999999999998887754
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.36 E-value=1.4e-06 Score=100.79 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=67.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
.+-|++++..||.+-++++..+.++++ +++.++.++.+..+..... .+||+.+|...+ .|+++.+. ..
T Consensus 119 ~VhVvT~NdyLA~RD~e~m~pvy~~LG---Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v 193 (870)
T CHL00122 119 GVHIVTVNDYLAKRDQEWMGQIYRFLG---LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVV 193 (870)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHcC---CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhh
Confidence 478999999999999999999999987 9999999888876655544 479999999866 35555432 23
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.++
T Consensus 194 ~r~~~faIVDEvDSiL 209 (870)
T CHL00122 194 QRPFNYCIIDEVDSIL 209 (870)
T ss_pred ccccceeeeecchhhe
Confidence 4678899999999875
No 142
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.33 E-value=4.1e-06 Score=85.98 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=63.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhH-HHHhCCC----c--c
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRME-DLISGGH----L--S 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~-~ll~~~~----l--~ 358 (651)
.+=|++.+..||..=++++..+...++ +++.++.++.+........ .+||+.+|...+. |.++... . .
T Consensus 120 ~V~vvT~NdyLA~RD~~~~~~~y~~LG---lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~ 194 (266)
T PF07517_consen 120 GVHVVTSNDYLAKRDAEEMRPFYEFLG---LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQV 194 (266)
T ss_dssp -EEEEESSHHHHHHHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--
T ss_pred CcEEEeccHHHhhccHHHHHHHHHHhh---hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhc
Confidence 467889999999999999999999887 9999999998865544333 3689999999884 4555321 1 2
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
.....++||||||.++
T Consensus 195 ~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 195 QRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSSSEEEECTHHHHT
T ss_pred cCCCCEEEEeccceEE
Confidence 4788999999999876
No 143
>KOG1123|consensus
Probab=98.30 E-value=4.4e-06 Score=89.62 Aligned_cols=136 Identities=14% Similarity=0.087 Sum_probs=89.0
Q ss_pred CCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
....+--|++.++|.|||.+.+.|+... ...+|||+.+---+.|...+++.+...-+ -.++.++....
T Consensus 317 NgRARSGiIVLPCGAGKtLVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~wsti~d---~~i~rFTsd~K- 384 (776)
T KOG1123|consen 317 NGRARSGIIVLPCGAGKTLVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD---DQICRFTSDAK- 384 (776)
T ss_pred CCcccCceEEEecCCCCceeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhcccCc---cceEEeecccc-
Confidence 3455667888999999999998887332 34799999999999999999988875332 22333333221
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCC--------CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCce
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGG--------HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~--------~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~ 399 (651)
.....++.|+|+|-..+..--++. .+.-..-.++|+||+|.+-..-|+..+.-+-.+
T Consensus 385 ----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH----------- 449 (776)
T KOG1123|consen 385 ----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH----------- 449 (776)
T ss_pred ----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH-----------
Confidence 123457899999975553211111 112244579999999998776565544433333
Q ss_pred eEEEEeeccCh
Q psy8712 400 QMIVCSATLHD 410 (651)
Q Consensus 400 Q~l~~SATl~~ 410 (651)
.-++++||+-.
T Consensus 450 cKLGLTATLvR 460 (776)
T KOG1123|consen 450 CKLGLTATLVR 460 (776)
T ss_pred hhccceeEEee
Confidence 44689999854
No 144
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.27 E-value=4.5e-06 Score=77.02 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=62.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
.+.++|||.|||.++..+.++++... +++..-.-+. ....+.-|-|+|-..+...+.+ .....+.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~-------~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~-p~~~~~y 96 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLP-------VRFHTNARMR-------THFGSSIIDVMCHATYGHFLLN-PCRLKNY 96 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSS-------EEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCC-------cccCceeeec-------cccCCCcccccccHHHHHHhcC-cccccCc
Confidence 35589999999999999998886443 3332111110 1123445778888888776665 4456899
Q ss_pred ceEeeccchhhhhc--cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 363 RFFVLDEADGLLKQ--GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 363 ~~lViDEaD~ll~~--gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+++|+||||..-.. .++..+...-. .. ...+|++|||.|.
T Consensus 97 d~II~DEcH~~Dp~sIA~rg~l~~~~~-~g-------~~~~i~mTATPPG 138 (148)
T PF07652_consen 97 DVIIMDECHFTDPTSIAARGYLRELAE-SG-------EAKVIFMTATPPG 138 (148)
T ss_dssp SEEEECTTT--SHHHHHHHHHHHHHHH-TT-------S-EEEEEESS-TT
T ss_pred cEEEEeccccCCHHHHhhheeHHHhhh-cc-------CeeEEEEeCCCCC
Confidence 99999999975322 12222333221 11 3679999999986
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=6e-06 Score=95.67 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=66.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Ccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HLS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l~ 358 (651)
.+-|++++..||..-++++..+.++++ ++|.++.++.+..+..... .+||+.||+..+ .|.|+.+ ...
T Consensus 128 gVhVVTvNdYLA~RDae~m~~vy~~LG---Ltvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~v 202 (939)
T PRK12902 128 GVHVVTVNDYLARRDAEWMGQVHRFLG---LSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVV 202 (939)
T ss_pred CeEEEeCCHHHHHhHHHHHHHHHHHhC---CeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccc
Confidence 478999999999999999999999886 9999998887766554333 689999999998 3444322 234
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.+|
T Consensus 203 qR~~~faIVDEvDSIL 218 (939)
T PRK12902 203 QRPFNYCVIDEVDSIL 218 (939)
T ss_pred cCccceEEEeccccee
Confidence 5788999999999775
No 146
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.23 E-value=1.4e-06 Score=72.04 Aligned_cols=50 Identities=36% Similarity=0.565 Sum_probs=44.8
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+.......+.+++.+..|+|++++++||.+++|.+...|.|++||++|.|
T Consensus 33 f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 33 FNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 44445578888999999999999999999999999999999999999975
No 147
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.19 E-value=1.5e-05 Score=86.64 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=50.3
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCC-----CCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTL-----PDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl-----P~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
.+....+++++-+.++.|||+|.|++|-.+|. .+|-.+.+|=||||+|. -.|.+|++...
T Consensus 492 LR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 492 LRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 44456677788888889999999999999886 46889999999999997 66999987764
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=98.14 E-value=5.2e-06 Score=94.01 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH----
Q psy8712 256 AVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---- 331 (651)
Q Consensus 256 ~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---- 331 (651)
..+.+|+|||+.+..-+- .-...++|+|+|+..|..|+.+....-.. + .++...+++........
T Consensus 185 LIMAcGTGKTfTsLkisE-------ala~~~iL~LvPSIsLLsQTlrew~~~~~-l---~~~a~aVcSD~kvsrs~eDik 253 (1518)
T COG4889 185 LIMACGTGKTFTSLKISE-------ALAAARILFLVPSISLLSQTLREWTAQKE-L---DFRASAVCSDDKVSRSAEDIK 253 (1518)
T ss_pred EEEecCCCccchHHHHHH-------HHhhhheEeecchHHHHHHHHHHHhhccC-c---cceeEEEecCccccccccccc
Confidence 346689999999876441 11225899999999999998887654321 2 26666665543221111
Q ss_pred ----------------HHh-----ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh
Q psy8712 332 ----------------SVL-----SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 332 ----------------~~L-----~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
..+ ..+--||.+|-+.+...-.....-+..++++|-||||+--.
T Consensus 254 ~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 254 ASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhcccc
Confidence 111 12457888888777665554455678899999999998653
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.09 E-value=2e-05 Score=92.35 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=36.0
Q ss_pred CCCCCcHHHHhhHHhHh---cC------CceEeeecCCCCccceeehhhHHHHHH
Q psy8712 21 DWLLPTDVQAEAIPLIL---GG------GDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il---~g------~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
|| .+.+-|.+.+..|. .+ +.+++.|+||+|||+||++|++....+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~ 76 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA 76 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH
Confidence 55 68999999766664 33 568899999999999999999875543
No 150
>KOG0951|consensus
Probab=98.08 E-value=9.2e-05 Score=87.18 Aligned_cols=189 Identities=17% Similarity=0.276 Sum_probs=135.5
Q ss_pred eeeeccCcccccccccchhhhhccCcchhhccccccccccCCCC--------CCCCCCCCeEEEecCCCCceeeeecccc
Q psy8712 202 VAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATP--------FKHEPPKDYIAVCNAPKQNVKHSESADV 273 (651)
Q Consensus 202 ~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~--------~~~~~~~~~i~~~~~gsGKT~~~~~a~~ 273 (651)
+-.|-++-.+..+|-.|.-|..-.-.|+--+.|.+..-.|.+.. ..++...+.++...+|+|||+++.+|+.
T Consensus 1102 ~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l 1181 (1674)
T KOG0951|consen 1102 LPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALL 1181 (1674)
T ss_pred cccchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhc
Confidence 44455666678888888888888788888889987777776642 2345678899999999999999998873
Q ss_pred ccCCccccCCCCeEEEEeCCHHHHHHHHHHH-HHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHH
Q psy8712 274 SAGPVKLVNNAPQAIIIEPSRELAEQTFNQI-IKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLI 352 (651)
Q Consensus 274 ~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~-~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll 352 (651)
. ....-+++.+.|..+.+.-++... ++|+... +..+..+.|..+..-. +....+|+|+||+++..+
T Consensus 1182 ~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l- 1248 (1674)
T KOG0951|consen 1182 R------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL---GLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL- 1248 (1674)
T ss_pred C------CccceEEEEecchHHHHHHHHHHHHHhhcccc---CceEEecCCccccchH---HhhhcceEEechhHHHHH-
Confidence 3 344568999999999987666544 4555543 4777777776665443 233469999999998654
Q ss_pred hCCCcccCCcceEeeccchhhhhccchH------HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 353 SGGHLSLTHCRFFVLDEADGLLKQGYGN------LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 353 ~~~~l~l~~l~~lViDEaD~ll~~gf~~------~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
+ ....+++.|.||.|.+-+. +++ .++.|-..+-+ +.+++.+|..+. ..+++
T Consensus 1249 q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k------~ir~v~ls~~la--na~d~ 1305 (1674)
T KOG0951|consen 1249 Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEK------KIRVVALSSSLA--NARDL 1305 (1674)
T ss_pred h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHh------heeEEEeehhhc--cchhh
Confidence 2 5678999999999988642 111 14555555554 578888888876 44554
No 151
>KOG0953|consensus
Probab=97.96 E-value=4.2e-05 Score=83.41 Aligned_cols=226 Identities=16% Similarity=0.101 Sum_probs=130.9
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV 333 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~ 333 (651)
+.-+++|.||||.-+.... ......++--|.|-||..+++.++..+ +.+-+++|.......-+
T Consensus 194 i~H~GPTNSGKTy~ALqrl---------~~aksGvycGPLrLLA~EV~~r~na~g-------ipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRL---------KSAKSGVYCGPLRLLAHEVYDRLNALG-------IPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEeCCCCCchhHHHHHHH---------hhhccceecchHHHHHHHHHHHhhhcC-------CCccccccceeeecCCC-
Confidence 5667889999999877554 223356788899999999999998776 66667777543222111
Q ss_pred hccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHH-HHHHhcCCCccCCCCceeEEEEeeccChHH
Q psy8712 334 LSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLI-DRMHKQIPKITSDGKRLQMIVCSATLHDFD 412 (651)
Q Consensus 334 L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i-~~il~~lp~~~~~~~~~Q~l~~SATl~~~~ 412 (651)
.+.+..+=+|-|.+.- -...+..||||+..|-|...+-.. +.++..... .....+= ..
T Consensus 257 -~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad------EiHLCGe------ps 315 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD------EIHLCGE------PS 315 (700)
T ss_pred -CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh------hhhccCC------ch
Confidence 1235666666554310 135678999999998874332222 222222211 1222111 14
Q ss_pred HHHHHHHhcc---CCeEEEcc-------CCCCc---cCce---EEEEEEe--------------------------Ccch
Q psy8712 413 VKKMAERLMY---FPTWVDLK-------GEDAV---PETV---HHVVVKI--------------------------DPQQ 450 (651)
Q Consensus 413 v~~l~~~~l~---~p~~i~~~-------~~~~~---~~~i---~~~~~~~--------------------------~~~~ 450 (651)
+.++.+.++. +-..+..- .++.. ..+| +.++.+. +++.
T Consensus 316 vldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeT 395 (700)
T KOG0953|consen 316 VLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPET 395 (700)
T ss_pred HHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCch
Confidence 4445554432 11111100 00000 1111 1222222 2222
Q ss_pred HHHHHHHhh--ccccceeeccccccCCCCCCCCCEEEEeCCC---------CChhhhhhhcCccccCCC---ceEEEEee
Q psy8712 451 DETWGRLRS--HIQTDGVHARDNARPGIDISGLPFIINMTLP---------DDKANYVHRIGRVGRAER---MGLAISLV 516 (651)
Q Consensus 451 ~~~~~~l~~--~~~~~~l~~td~~~rGIDip~v~~VIn~dlP---------~s~~~YihRiGR~GR~g~---~G~ai~lv 516 (651)
+..-..+++ ...+++++++|....|+++. |+-||.|++- -+...-.|-.|||||.|. .|.+.+|.
T Consensus 396 r~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 396 RLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred hHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 222222233 36788999999999999974 8999998874 356677899999999975 68888877
Q ss_pred eC
Q psy8712 517 ST 518 (651)
Q Consensus 517 ~~ 518 (651)
.+
T Consensus 475 ~e 476 (700)
T KOG0953|consen 475 SE 476 (700)
T ss_pred Hh
Confidence 65
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.92 E-value=3.4e-05 Score=90.24 Aligned_cols=50 Identities=32% Similarity=0.428 Sum_probs=40.9
Q ss_pred HHHcCCCCCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 17 VEEMDWLLPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
...+....|.+.|.+.+..+ .+|+-+++.||||+|||++|++|++.....
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~ 61 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE 61 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH
Confidence 34556678999999998654 355669999999999999999999986655
No 153
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.77 E-value=0.00017 Score=85.16 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=83.9
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHH--Hh----hccCCCCCeeEEEEeCCc
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQII--KF----KKFITDPKIRELLIIGGV 325 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~--~l----~~~~~~~~i~v~~l~Gg~ 325 (651)
.|+...+.||+|||.++..++..+.. ..+..+.||+||+.+.-..+.+.++ .. ....+...++...+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~---~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQ---KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 36777788899999887777633322 1234579999999988887777665 12 122233346655555443
Q ss_pred -------cHHHHHHHh-c------cCCcEEEECchhhHHHHh----------CCC-cc---cCCc-ceEeeccchhhhhc
Q psy8712 326 -------NVKDQMSVL-S------SGVDIVVGTPGRMEDLIS----------GGH-LS---LTHC-RFFVLDEADGLLKQ 376 (651)
Q Consensus 326 -------~~~~q~~~L-~------~~~dIlV~TP~rL~~ll~----------~~~-l~---l~~l-~~lViDEaD~ll~~ 376 (651)
....+.+.. . +..+|+|+|-+.+..-.. .+. .. +... -+||+||.|++-..
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 112222211 1 157999999988754211 001 11 2222 27899999998542
Q ss_pred cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 377 gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+ .....| ..+.+ .-++.||||.+.
T Consensus 217 ~--k~~~~i-~~lnp-------l~~lrysAT~~~ 240 (986)
T PRK15483 217 N--KFYQAI-EALKP-------QMIIRFGATFPD 240 (986)
T ss_pred h--HHHHHH-HhcCc-------ccEEEEeeecCC
Confidence 1 123344 33332 245779999974
No 154
>KOG3953|consensus
Probab=97.72 E-value=4.8e-05 Score=74.51 Aligned_cols=154 Identities=24% Similarity=0.324 Sum_probs=105.7
Q ss_pred eeeeccccccccccCCCC-c-ccccccccccccccccccccCCceeEEEEEeccC--C-ceeecccccccccc-------
Q psy8712 89 WILSVWDRDTAMAITPEG-L-RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDE--G-LCRVGWSTSQAVRD------- 156 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~-~~~~~~~~~~~~~~------- 156 (651)
+..+..+|+...-+-.++ . .-+-.....=.|.|++.|.+ +|..++|+.+... | -.=||-+|+.|.+.
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~-~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aL 105 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYS-RGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTAL 105 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeec-cCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHH
Confidence 344555555544444333 2 12222223356888888888 7999999999873 2 34589999999887
Q ss_pred CCCCCCCCCcC-CCCccCCCc------ccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcch
Q psy8712 157 LGTDRFGFGFG-GTGKKSNNK------QFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPA 229 (651)
Q Consensus 157 ~g~~~~~~~~g-g~~~ks~~~------~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~ 229 (651)
+|.+.+|||.- +..+=-|++ ..-+-.+.|-.+|.|+|+||.+.|+.+|-++|+.||.||.--. ...+||+
T Consensus 106 lGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~---~~~LYP~ 182 (242)
T KOG3953|consen 106 LGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK---DKKLYPA 182 (242)
T ss_pred hCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC---CCcceee
Confidence 89999999753 222222332 1112267789999999999999999999999999999997543 7789999
Q ss_pred hhcc--ccccccccCCCCC
Q psy8712 230 VVLK--NAEMSFNFGATPF 246 (651)
Q Consensus 230 ~~~k--~~~~~~~f~~~~~ 246 (651)
|+-. |+|+..-|-.++.
T Consensus 183 Vsav~g~~Evtm~Ylg~~~ 201 (242)
T KOG3953|consen 183 VSAVWGHCEVTMKYLGTLD 201 (242)
T ss_pred eeehhcceeEEEEEeCCcC
Confidence 8854 3555555544444
No 155
>KOG0385|consensus
Probab=97.64 E-value=0.00029 Score=79.64 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD 329 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~ 329 (651)
..-|-|.....|-|||.=++..++.+.... ..++|. |||+|---|.+ ++..|.++.+ ++++++++|......
T Consensus 185 ngingILaDEMGLGKTlQtIs~l~yl~~~~-~~~GPf-LVi~P~StL~N----W~~Ef~rf~P--~l~~~~~~Gdk~eR~ 256 (971)
T KOG0385|consen 185 NGINGILADEMGLGKTLQTISLLGYLKGRK-GIPGPF-LVIAPKSTLDN----WMNEFKRFTP--SLNVVVYHGDKEERA 256 (971)
T ss_pred cCcccEeehhcccchHHHHHHHHHHHHHhc-CCCCCe-EEEeeHhhHHH----HHHHHHHhCC--CcceEEEeCCHHHHH
Confidence 455778888999999988776664443321 234555 78899877654 4444444443 689999998864322
Q ss_pred HH--HHh-ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 330 QM--SVL-SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 330 q~--~~L-~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.. ..+ ....||+|+|-+..+.- ...+.--.=+++||||||++=.. ...+..+++.+.. ..-+++|.
T Consensus 257 ~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-------~nrLLlTG 325 (971)
T KOG0385|consen 257 ALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-------DNRLLLTG 325 (971)
T ss_pred HHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-------cceeEeeC
Confidence 22 122 23689999998876532 12222234479999999999653 3345566766654 34567777
Q ss_pred cc
Q psy8712 407 TL 408 (651)
Q Consensus 407 Tl 408 (651)
|.
T Consensus 326 TP 327 (971)
T KOG0385|consen 326 TP 327 (971)
T ss_pred Cc
Confidence 74
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.64 E-value=7.5e-05 Score=86.42 Aligned_cols=126 Identities=8% Similarity=0.091 Sum_probs=86.3
Q ss_pred CCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH---Hhcc-
Q psy8712 261 PKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS---VLSS- 336 (651)
Q Consensus 261 gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~---~L~~- 336 (651)
|+|||.++..++... -..+.++|||+|...|+.|+.+.++.... .-.+..+.++.+..+..+ .+.+
T Consensus 170 GSGKTevyl~~i~~~-----l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-----~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 170 GEDWARRLAAAAAAT-----LRAGRGALVVVPDQRDVDRLEAALRALLG-----AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred CCcHHHHHHHHHHHH-----HHcCCeEEEEecchhhHHHHHHHHHHHcC-----CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 899999988776221 12366899999999999999999986543 145677888777654443 3333
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh---ccchHHHHHH---HhcCCCccCCCCceeEEEEeeccCh
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK---QGYGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~---~gf~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.++|||||-..+ ...++++.+|||||-|.-.- .+.+.+.+.+ ..... +..+|+-|||.+-
T Consensus 240 ~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~-------~~~lvLgSaTPSl 305 (665)
T PRK14873 240 QARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH-------GCALLIGGHARTA 305 (665)
T ss_pred CCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc-------CCcEEEECCCCCH
Confidence 489999995332 34689999999999885431 1223233333 23322 5899999999764
No 157
>KOG2242|consensus
Probab=97.63 E-value=2e-05 Score=88.67 Aligned_cols=115 Identities=37% Similarity=0.663 Sum_probs=103.8
Q ss_pred EEEeccCCceeeccccccccccCCCCCCCCCcCCCCccCCCcccCccCcccCCCccccccccc---CCceeeeeccCccc
Q psy8712 135 EATVTDEGLCRVGWSTSQAVRDLGTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDL---DNMTVAFTKNGQHL 211 (651)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~---~~~~~~~~~ng~~~ 211 (651)
-....+.-..|++|+...+..-++.+.++++|.++++|+++..|..|++-|..+|+|||+++. |.-..+|.|||+.+
T Consensus 99 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~ 178 (558)
T KOG2242|consen 99 QPLEPDPHDVRIGWSLDSIRTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDL 178 (558)
T ss_pred CccccccccccccccchhhhhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchh
Confidence 345667778899999999999999999999999999999999999999999999999999995 77899999999999
Q ss_pred ccccccchhhhhcc-CcchhhccccccccccCCCCCCCC
Q psy8712 212 GLAFNISQQLKNSA-FYPAVVLKNAEMSFNFGATPFKHE 249 (651)
Q Consensus 212 g~af~~~~~~~~~~-~~p~~~~k~~~~~~~f~~~~~~~~ 249 (651)
+.+|.+..-+.... ++|.+..+|..+.++|++.+-...
T Consensus 179 ~~~~~l~~~~~~~~~~~p~vl~~~~~ve~~f~~~~ag~~ 217 (558)
T KOG2242|consen 179 GESFLLSKEDLGGQALYPHVLRKNCAVEGNFGQKAAGYE 217 (558)
T ss_pred hhhhcchhhhccCcccCcccccCcceecccccccccccc
Confidence 99999987666554 999999999999999999875543
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.55 E-value=0.00016 Score=85.43 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=104.3
Q ss_pred ccccccccCCCCC-------CCCCCCCe--EEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHH
Q psy8712 234 NAEMSFNFGATPF-------KHEPPKDY--IAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQI 304 (651)
Q Consensus 234 ~~~~~~~f~~~~~-------~~~~~~~~--i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~ 304 (651)
.....|.+++..+ ...+..++ +-++.||+|||.+-...|..+. ....+.+..|-.-.|.|-.|+-+.+
T Consensus 405 ~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLs---d~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 405 SAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALR---DDKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhC---CCCCCceEEEEccccceeccchHHH
Confidence 4445566666542 12344443 4578999999999877662222 2345668888888999999999888
Q ss_pred HHhhccCCCCCeeEEEEeCCccHHHHH-------------------------------------------HHhcc-----
Q psy8712 305 IKFKKFITDPKIRELLIIGGVNVKDQM-------------------------------------------SVLSS----- 336 (651)
Q Consensus 305 ~~l~~~~~~~~i~v~~l~Gg~~~~~q~-------------------------------------------~~L~~----- 336 (651)
++-...-+ =..++++||....+-. ..|.+
T Consensus 482 r~rL~L~~---ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~ 558 (1110)
T TIGR02562 482 KTRLNLSD---DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEK 558 (1110)
T ss_pred HHhcCCCc---cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhh
Confidence 87543222 2334455543211100 01110
Q ss_pred ---CCcEEEECchhhHHHHh--C-CCcccC----CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 337 ---GVDIVVGTPGRMEDLIS--G-GHLSLT----HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 337 ---~~dIlV~TP~rL~~ll~--~-~~l~l~----~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
...|+|||+..++-... + +...+. .=+.|||||+|..-.. ....+..++.-+... ...++++||
T Consensus 559 rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~l-----G~~VlLmSA 632 (1110)
T TIGR02562 559 TLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLL-----GSRVLLSSA 632 (1110)
T ss_pred hhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHc-----CCCEEEEeC
Confidence 26899999999987652 2 222111 1358999999965332 123344555433322 478999999
Q ss_pred ccChHHHHHHHHHh
Q psy8712 407 TLHDFDVKKMAERL 420 (651)
Q Consensus 407 Tl~~~~v~~l~~~~ 420 (651)
|+|+.....+...|
T Consensus 633 TLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 633 TLPPALVKTLFRAY 646 (1110)
T ss_pred CCCHHHHHHHHHHH
Confidence 99996666666655
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.45 E-value=0.0012 Score=76.41 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=89.4
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
-.++.++.|+|||++...-+... ...+.-.+|+|+-.+.|+.++.+.++...-. ++....-..+....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~----l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~----gFv~Y~d~~~~~i~---- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDA----LKNPDKSVLVVSHRRSLTKSLAERFKKAGLS----GFVNYLDSDDYIID---- 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHh----ccCCCCeEEEEEhHHHHHHHHHHHHhhcCCC----cceeeecccccccc----
Confidence 37889999999998765443111 0134568999999999999999988754310 11111111111110
Q ss_pred HhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHH------HHHHhcCCCccCCCCceeEEEEee
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLI------DRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i------~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.+..+-++...+.|..+. .-.+++.++|||||+...+.+-|.+.+ ..++..+-.. ...+|++-|
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~-----ak~VI~~DA 188 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN-----AKTVIVMDA 188 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh-----CCeEEEecC
Confidence 113466677766664432 223567899999999988875332222 2222222110 358999999
Q ss_pred ccChHHHHHHHHHhcc
Q psy8712 407 TLHDFDVKKMAERLMY 422 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l~ 422 (651)
|++. ..-+|.+.+..
T Consensus 189 ~ln~-~tvdFl~~~Rp 203 (824)
T PF02399_consen 189 DLND-QTVDFLASCRP 203 (824)
T ss_pred CCCH-HHHHHHHHhCC
Confidence 9997 77778777654
No 160
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.44 E-value=0.0002 Score=72.86 Aligned_cols=87 Identities=26% Similarity=0.453 Sum_probs=67.7
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCC-ccHHHHHHHhcc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 281 VNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGG-VNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 281 ~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg-~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+..|.+|||+.+-.-|..+.+.++.|... ..+++-++.- ...++|...|++ .++|.||||+|+..++..+.+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k----~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~ 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGK----DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALS 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccC----CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCC
Confidence 467899999999977777777777776311 1233333332 357888888875 6899999999999999999999
Q ss_pred cCCcceEeeccch
Q psy8712 359 LTHCRFFVLDEAD 371 (651)
Q Consensus 359 l~~l~~lViDEaD 371 (651)
++++++||||--|
T Consensus 199 l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 199 LSNLKRIVLDWSY 211 (252)
T ss_pred cccCeEEEEcCCc
Confidence 9999999999754
No 161
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.35 E-value=0.00084 Score=67.02 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.1
Q ss_pred CcHHHHhhHHhHhcCCc-eEeeecCCCCcc
Q psy8712 25 PTDVQAEAIPLILGGGD-VLMAAETGSGKT 53 (651)
Q Consensus 25 pt~iQ~~aip~il~g~d-vl~~a~TGsGKT 53 (651)
+.+-|.+||..++...+ .++.+|.|||||
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT 31 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKT 31 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChH
Confidence 46889999999999999 999999999999
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.30 E-value=0.00083 Score=66.32 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=24.9
Q ss_pred CcHHHHhhHHhHhcCCc--eEeeecCCCCccc
Q psy8712 25 PTDVQAEAIPLILGGGD--VLMAAETGSGKTG 54 (651)
Q Consensus 25 pt~iQ~~aip~il~g~d--vl~~a~TGsGKT~ 54 (651)
+++-|.+|+..++..+| +++.++.|||||.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~ 33 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTT 33 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHH
Confidence 68899999999986653 7778999999995
No 163
>KOG0952|consensus
Probab=97.30 E-value=6.2e-05 Score=87.40 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=81.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC--CCcccCCc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG--GHLSLTHC 362 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~--~~l~l~~l 362 (651)
.++++++|..+|+..-.+... +....+++++.-+.|....+.. .+ ..++|+|+||+++....++ ..-.+.++
T Consensus 974 ~kvvyIap~kalvker~~Dw~---~r~~~~g~k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v 1047 (1230)
T KOG0952|consen 974 SKVVYIAPDKALVKERSDDWS---KRDELPGIKVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSV 1047 (1230)
T ss_pred ccEEEEcCCchhhcccccchh---hhcccCCceeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccc
Confidence 368899999999875444433 2233346888888888765522 22 3589999999999887773 33457899
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
..+|+||.|++-+ +.++.++.+..+.... .......|.+.+|--+. ...+++.++-
T Consensus 1048 ~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~--na~dla~wl~ 1104 (1230)
T KOG0952|consen 1048 SLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA--NANDLADWLN 1104 (1230)
T ss_pred cceeecccccccC-CCcceEEEEeeccccCccccCcchhhhhHhhhhh--ccHHHHHHhC
Confidence 9999999998765 5556555554443321 11122456666654333 4556666654
No 164
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.16 E-value=0.00068 Score=73.19 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=70.4
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
-+++.+..|||||.++...+..+ .....+..+++++++..|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l---~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL---QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh---hccccCCceEEEEecchHHHHHHHHHhhhccc----------------------
Confidence 46889999999999988776443 11345678999999999999888877543300
Q ss_pred HhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhcc-------chHHHHHHHhc
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-------YGNLIDRMHKQ 388 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~g-------f~~~i~~il~~ 388 (651)
......+..|..+...+..........++|||||||+|.+.+ ...++..+++.
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001122333333333222223345788999999999998832 23567777766
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.15 E-value=0.0012 Score=79.82 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=97.4
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
....+.++.=.+|||||.....++..+... ...|.+++|+-.++|-.|+.+.++.++.... ... ...+..
T Consensus 271 ~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~----~~~---~~~s~~ 340 (962)
T COG0610 271 GDGKGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF----NDP---KAESTS 340 (962)
T ss_pred CcCCceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhh----hcc---cccCHH
Confidence 456778888899999999877766333322 6789999999999999999999999986432 111 344455
Q ss_pred HHHHHhccCC-cEEEECchhhHHHHhCCC-cccCCc-ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 329 DQMSVLSSGV-DIVVGTPGRMEDLISGGH-LSLTHC-RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 329 ~q~~~L~~~~-dIlV~TP~rL~~ll~~~~-l~l~~l-~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
+-.+.|+.+. .|+|+|-+.+........ ..+.+- -.||+||||+-- ++..-..+-..+++ ...++||
T Consensus 341 ~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~-------a~~~gFT 410 (962)
T COG0610 341 ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKK-------AIFIGFT 410 (962)
T ss_pred HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhcc-------ceEEEee
Confidence 5555666544 899999999987775541 112222 367899999842 33333444445553 6899999
Q ss_pred eccC
Q psy8712 406 ATLH 409 (651)
Q Consensus 406 ATl~ 409 (651)
.|.-
T Consensus 411 GTPi 414 (962)
T COG0610 411 GTPI 414 (962)
T ss_pred CCcc
Confidence 9853
No 166
>KOG1000|consensus
Probab=97.00 E-value=0.025 Score=61.57 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceE--EEEeeeCC--ccccc
Q psy8712 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL--AISLVSTV--PEKVW 524 (651)
Q Consensus 475 GIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~--ai~lv~~~--de~~~ 524 (651)
||++...+.||...+|.++.-.+|---|+-|-|.+.. ++.|+... |+..|
T Consensus 557 GLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~W 610 (689)
T KOG1000|consen 557 GLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMW 610 (689)
T ss_pred ceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHH
Confidence 9999999999999999987666555555555454433 44455543 44444
No 167
>KOG0390|consensus
Probab=96.87 E-value=0.018 Score=66.91 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred CCCeEEEecCCCCceeeeeccc-cccCCcc-ccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH-
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD-VSAGPVK-LVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV- 327 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~-~~~~~~~-~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~- 327 (651)
..+.|..-.-|+|||...+..+ +.+.+.+ +.+--.++||++|.- |+...++.|.++.. ...+....++|....
T Consensus 263 ~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWkkEF~KWl~---~~~i~~l~~~~~~~~~ 338 (776)
T KOG0390|consen 263 SGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWKKEFGKWLG---NHRINPLDFYSTKKSS 338 (776)
T ss_pred CCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHHHHHHHhcc---ccccceeeeecccchh
Confidence 4456777778999999988877 3332221 112235789999963 55555555555443 224777777877764
Q ss_pred -HHHHHHhcc-----CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 328 -KDQMSVLSS-----GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 328 -~~q~~~L~~-----~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
..+...+.- ..-|++.+-+.+.+..+ .+....+.+||+||.|++=+. ...+...+..+.- ..-
T Consensus 339 w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~--~s~~~kaL~~l~t-------~rR 407 (776)
T KOG0390|consen 339 WIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS--DSLTLKALSSLKT-------PRR 407 (776)
T ss_pred hhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch--hhHHHHHHHhcCC-------Cce
Confidence 111111211 23566667666654333 344678899999999987543 2234455555543 467
Q ss_pred EEEeeccChHHHHHH
Q psy8712 402 IVCSATLHDFDVKKM 416 (651)
Q Consensus 402 l~~SATl~~~~v~~l 416 (651)
|++|.|+-..++.++
T Consensus 408 VLLSGTp~QNdl~Ey 422 (776)
T KOG0390|consen 408 VLLTGTPIQNDLKEY 422 (776)
T ss_pred EEeeCCcccccHHHH
Confidence 788888644344443
No 168
>KOG0387|consensus
Probab=96.75 E-value=0.023 Score=65.05 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=86.2
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH----
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---- 327 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---- 327 (651)
.+-|.-...|-|||.=.+..++.+...... ...||||||.. ++.|..++++.+.. .++|..+++..+.
T Consensus 225 ~GGILgDeMGLGKTIQiisFLaaL~~S~k~--~~paLIVCP~T-ii~qW~~E~~~w~p-----~~rv~ilh~t~s~~r~~ 296 (923)
T KOG0387|consen 225 AGGILGDEMGLGKTIQIISFLAALHHSGKL--TKPALIVCPAT-IIHQWMKEFQTWWP-----PFRVFILHGTGSGARYD 296 (923)
T ss_pred CCCeecccccCccchhHHHHHHHHhhcccc--cCceEEEccHH-HHHHHHHHHHHhCc-----ceEEEEEecCCcccccc
Confidence 345666788999998665554333333111 25699999975 45566666665553 4888888776552
Q ss_pred ----HHHHHH-h----ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 328 ----KDQMSV-L----SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 328 ----~~q~~~-L----~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
...... | ....+|+|+|-..+.- ....+.--.=.++|+||.|++-+. ..++...++.++.
T Consensus 297 ~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~T------- 365 (923)
T KOG0387|consen 297 ASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP--NSKISLACKKIRT------- 365 (923)
T ss_pred cchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC--ccHHHHHHHhccc-------
Confidence 111111 1 1246799999654321 111222234479999999998653 3345555666664
Q ss_pred eeEEEEeeccChHHHHHHH
Q psy8712 399 LQMIVCSATLHDFDVKKMA 417 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~ 417 (651)
.+.+.+|.|.-...+.+|-
T Consensus 366 ~~RiILSGTPiQNnL~ELw 384 (923)
T KOG0387|consen 366 VHRIILSGTPIQNNLTELW 384 (923)
T ss_pred cceEEeeCccccchHHHHH
Confidence 5677788885443444443
No 169
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.58 E-value=0.036 Score=64.06 Aligned_cols=153 Identities=10% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccC-----CCCCee
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFI-----TDPKIR 317 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~-----~~~~i~ 317 (651)
..+...+.+-|+=+.+-||+|||.+++..|-.+++. -.--+-||+|||.+.-.-++...+....++ .+..+.
T Consensus 66 ~~~~~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~---YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e 142 (985)
T COG3587 66 QGSVRIDDKLNIDILMETGTGKTYTYLRTMFELHKK---YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLE 142 (985)
T ss_pred cccccCCCcceeeEEEecCCCceeeHHHHHHHHHHH---hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCccee
Confidence 445566788899999999999999998888444331 233467999999876544443333333322 212233
Q ss_pred EEEEeCCccHHHHHHHhccCCcEEEECchhhHH------HHhCCCcc--------------cCCc-ceEeeccchhhhhc
Q psy8712 318 ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMED------LISGGHLS--------------LTHC-RFFVLDEADGLLKQ 376 (651)
Q Consensus 318 v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~------ll~~~~l~--------------l~~l-~~lViDEaD~ll~~ 376 (651)
..... .......-.-...+.+++.|-..+.. ++.+.... +..+ -++||||=|+|...
T Consensus 143 ~~i~~--~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~ 220 (985)
T COG3587 143 SYIYD--EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD 220 (985)
T ss_pred EEeec--hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc
Confidence 22221 22222222223467888887655432 22221111 1122 28999999998762
Q ss_pred cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 377 gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
-.....|...-| .-++=|+||.+.
T Consensus 221 --~k~~~~i~~l~p--------l~ilRfgATfkd 244 (985)
T COG3587 221 --DKTYGAIKQLNP--------LLILRFGATFKD 244 (985)
T ss_pred --hHHHHHHHhhCc--------eEEEEecccchh
Confidence 111222332222 356679999875
No 170
>KOG0331|consensus
Probab=96.58 E-value=0.00056 Score=75.78 Aligned_cols=227 Identities=15% Similarity=0.238 Sum_probs=134.0
Q ss_pred CCccccccCceeeeccccccccccCCCCc-ccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccC
Q psy8712 79 KAKAQVISPTWILSVWDRDTAMAITPEGL-RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDL 157 (651)
Q Consensus 79 ~~~~~~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 157 (651)
.+.+++++|++||+.|.......+..... .|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~------------------------------------------------ 196 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRS------------------------------------------------ 196 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccE------------------------------------------------
Confidence 56799999999999999998887764321 01
Q ss_pred CCCCCCCCcCCCCccCCCcccCccCcccCCCccc----cccccc-CCceeeeeccCcc--------cccccccc-----h
Q psy8712 158 GTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVI----GCLLDL-DNMTVAFTKNGQH--------LGLAFNIS-----Q 219 (651)
Q Consensus 158 g~~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~i----g~~~~~-~~~~~~~~~ng~~--------~g~af~~~-----~ 219 (651)
--.|||+.+-.+.+..+. |. ||+ |.++|+ +.|.+.+++..+. |+|+|+.. .
T Consensus 197 -----~cvyGG~~~~~Q~~~l~~-gv-----diviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 197 -----TCVYGGAPKGPQLRDLER-GV-----DVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred -----EEEeCCCCccHHHHHHhc-CC-----cEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 014888888777766543 32 555 999997 9999999999887 89999752 1
Q ss_pred hh----hhccCcchhhccc-cccccccCCCCCCC------------CCCCCeEEEecCCCCceeeeeccccccCCccccC
Q psy8712 220 QL----KNSAFYPAVVLKN-AEMSFNFGATPFKH------------EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVN 282 (651)
Q Consensus 220 ~~----~~~~~~p~~~~k~-~~~~~~f~~~~~~~------------~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~ 282 (651)
.+ +.-.+|.|-.-++ -.+.-.|-..|... +-.+...+|. ...|-..- ...+.... ..
T Consensus 266 ~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~--~~~K~~~l---~~lL~~~~-~~ 339 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD--ETAKLRKL---GKLLEDIS-SD 339 (519)
T ss_pred hcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC--HHHHHHHH---HHHHHHHh-cc
Confidence 11 1111111111111 00111111111100 0000000000 11111000 00000111 24
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.|-|+.-|.++...++... +++.++.|+.+..+....|+. .+.|||+|- +....++
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~-------~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLD 406 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKG-------WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLD 406 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcC-------cceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCC
Confidence 55689999999999999888887654 778899999887776666642 589999993 4556778
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~ 391 (651)
+.+|++|| ...|-..++..+.+.-.
T Consensus 407 i~dV~lVI--------nydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 407 VPDVDLVI--------NYDFPNNVEDYVHRIGR 431 (519)
T ss_pred CccccEEE--------eCCCCCCHHHHHhhcCc
Confidence 88888887 33455556666555543
No 171
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.41 E-value=0.0044 Score=70.21 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCCCHHHHH-HHHHcCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 7 MGVLPEIGK-AVEEMDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 7 l~l~~~l~~-~l~~~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
+....++++ .++.+.| .+|.-|..+|.-|+.. -+=|+++.-|||||.+.++.+++.+-. +
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~------------G 311 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA------------G 311 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc------------C
Confidence 344455444 4477888 5799999999999865 245788889999999999999987755 5
Q ss_pred CccccccCceeeeccccccc
Q psy8712 80 AKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~ 99 (651)
.++...+||=-|+.|-...+
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 312 YQAALMAPTEILAEQHYESL 331 (677)
T ss_pred CeeEEeccHHHHHHHHHHHH
Confidence 57777888755655544444
No 172
>KOG0332|consensus
Probab=96.40 E-value=0.00052 Score=71.85 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=40.5
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
|.|+|+.|+++|..++. .+.++||+|.|+++++|+|||.+|+++|
T Consensus 106 y~M~F~kPskIQe~aLP-----------------lll~~Pp~nlIaQsqsGtGKTaaFvL~M 150 (477)
T KOG0332|consen 106 YAMKFQKPSKIQETALP-----------------LLLAEPPQNLIAQSQSGTGKTAAFVLTM 150 (477)
T ss_pred HHhccCCcchHHHhhcc-----------------hhhcCCchhhhhhhcCCCchhHHHHHHH
Confidence 67999999999998872 4667899999999999999999999876
No 173
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.0014 Score=74.41 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+.|+..|..+...+...+ +++..++|+.+.....+.+. ...+|+|+|- +....+++
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g-------~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD------vaaRGiDi 339 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRG-------FKVAALHGDLPQEERDRALEKFKDGELRVLVATD------VAARGLDI 339 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCC-------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec------hhhccCCc
Confidence 3479999999999999888887765 88999999988766665553 3689999993 33556778
Q ss_pred CCcceEe
Q psy8712 360 THCRFFV 366 (651)
Q Consensus 360 ~~l~~lV 366 (651)
.++.+||
T Consensus 340 ~~v~~Vi 346 (513)
T COG0513 340 PDVSHVI 346 (513)
T ss_pred cccceeE
Confidence 8888886
No 174
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.25 E-value=0.0036 Score=74.06 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=84.8
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeC-CccHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIG-GVNVKD 329 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~G-g~~~~~ 329 (651)
.++.|+.+.||-|||.++.+++.. ..-.+.-+-|++.+--||..=.+++..+..+++ ++|.++.. +.+..+
T Consensus 182 h~G~IAEM~TGEGKTLvAtlp~yL-----nAL~GkgVHvVTVNDYLA~RDaewmgply~fLG---Lsvg~i~~~~~~~~~ 253 (1112)
T PRK12901 182 HQGKIAEMATGEGKTLVATLPVYL-----NALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHG---LSVDCIDKHQPNSEA 253 (1112)
T ss_pred cCCceeeecCCCCchhHHHHHHHH-----HHHcCCCcEEEEechhhhhccHHHHHHHHHHhC---CceeecCCCCCCHHH
Confidence 478999999999999999887611 122344577889999999999999988888886 99998876 334443
Q ss_pred HHHHhccCCcEEEECchhh-HHHHhCCC------cccCCcceEeeccchhhh
Q psy8712 330 QMSVLSSGVDIVVGTPGRM-EDLISGGH------LSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 330 q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l~~l~~lViDEaD~ll 374 (651)
..... .+||..||..-+ .|+|+.+. .....+.+.||||+|.+|
T Consensus 254 rr~aY--~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 254 RRKAY--NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHHhC--CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 33322 589999998877 55555432 234678899999999775
No 175
>KOG0389|consensus
Probab=96.21 E-value=0.01 Score=67.83 Aligned_cols=152 Identities=12% Similarity=0.110 Sum_probs=95.3
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
....+-|.....|-|||.=.+...+.+.+.. .++|. ||+||+--| .+++++|.++.+ .++|...+|.....
T Consensus 416 k~~l~gILADEMGLGKTiQvIaFlayLkq~g--~~gpH-LVVvPsSTl----eNWlrEf~kwCP--sl~Ve~YyGSq~ER 486 (941)
T KOG0389|consen 416 KKKLNGILADEMGLGKTIQVIAFLAYLKQIG--NPGPH-LVVVPSSTL----ENWLREFAKWCP--SLKVEPYYGSQDER 486 (941)
T ss_pred HccccceehhhccCcchhHHHHHHHHHHHcC--CCCCc-EEEecchhH----HHHHHHHHHhCC--ceEEEeccCcHHHH
Confidence 3455667888899999988777666665543 35554 788897554 567777777754 79999999988765
Q ss_pred HHHHHh-c---cCCcEEEECchhhHHHH-hCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 329 DQMSVL-S---SGVDIVVGTPGRMEDLI-SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 329 ~q~~~L-~---~~~dIlV~TP~rL~~ll-~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
.+.+.. . ...+|+|+|-.-...-- .+..+.-.++.++|+||+|.|=+..- .-.+.++..- . .+.++
T Consensus 487 ~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy~~LM~I~-A-------n~RlL 557 (941)
T KOG0389|consen 487 RELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERYKHLMSIN-A-------NFRLL 557 (941)
T ss_pred HHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHHHHhcccc-c-------cceEE
Confidence 555432 2 25899999964332100 01123345678999999998866431 2233333222 1 35677
Q ss_pred EeeccChHHHHHHHH
Q psy8712 404 CSATLHDFDVKKMAE 418 (651)
Q Consensus 404 ~SATl~~~~v~~l~~ 418 (651)
+|.|.=..++.+|..
T Consensus 558 LTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 558 LTGTPLQNNLKELIS 572 (941)
T ss_pred eeCCcccccHHHHHH
Confidence 788853335555444
No 176
>KOG1803|consensus
Probab=96.07 E-value=0.016 Score=64.74 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=34.5
Q ss_pred CCcHHHHhhHHhHhcCCc-eEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAEAIPLILGGGD-VLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
...+-|.+|+......++ .++++|+|+|||.....-+.|.+..
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~ 228 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ 228 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc
Confidence 455779999998888866 5788999999999887777776655
No 177
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.04 E-value=0.019 Score=67.74 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=37.6
Q ss_pred CCCCCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 21 DWLLPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
-|..+.|.|.+.+..+ ..|+.+++.||||+|||+|-+.|+|....
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~ 55 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ 55 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH
Confidence 4566689999887665 47899999999999999999999998554
No 178
>KOG1477|consensus
Probab=95.86 E-value=0.0052 Score=68.20 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=80.6
Q ss_pred ceeEEEEEecc---CCceeecccccccccc--CCCCCCCCCcCCCCccCCC---cccCccCcccCCCcccccccccCCce
Q psy8712 130 GKYYYEATVTD---EGLCRVGWSTSQAVRD--LGTDRFGFGFGGTGKKSNN---KQFDNYGEAFGMHDVIGCLLDLDNMT 201 (651)
Q Consensus 130 ~~~~~e~~~~~---~~~~~~~~~~~~~~~~--~g~~~~~~~~gg~~~ks~~---~~~~~~g~~~~~~d~ig~~~~~~~~~ 201 (651)
|-||||+.+.| +|..-+|......+.+ .|--..+++|-|+.=.-++ ..+..||.+|+.+|.|||-++.-+.+
T Consensus 79 ~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~ 158 (469)
T KOG1477|consen 79 GIYYFEFDILDYGIEGRIKIGFLIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQE 158 (469)
T ss_pred ccceeeeeHHHhhhhhceEEEEEecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhhe
Confidence 68999999985 4455555555444443 5555558889887666555 67899999999999999999999999
Q ss_pred eeeeccCcccccccccc--hhhhhccCcchhhccccccccccC
Q psy8712 202 VAFTKNGQHLGLAFNIS--QQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 202 ~~~~~ng~~~g~af~~~--~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
|.|+|||..+|..+..- .-++...-+-.....|=++..+|+
T Consensus 159 i~~t~~g~~~~~~~~~~~~~~~~~~~n~~~~~s~~~~I~~~~g 201 (469)
T KOG1477|consen 159 IFFTKNGTEVGEIIKPLSPDLLEENGNLAWLFSPNEEVEVNFG 201 (469)
T ss_pred eeeccCccccccccccccccccccccceeeEeccCceeeeeec
Confidence 99999999999999762 222221111223344556666666
No 179
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.78 E-value=0.1 Score=60.34 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=27.3
Q ss_pred cHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 26 TDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 26 t~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
++.|.+|+-..+..+-+++.+++|+|||.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt 182 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTT 182 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 58999999999999999999999999993
No 180
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.74 E-value=0.059 Score=62.01 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=27.1
Q ss_pred cHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 26 TDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 26 t~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.+.|++|+-.++..+-+++.++.|||||.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt 175 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTT 175 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHH
Confidence 47999999999999999999999999994
No 181
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.73 E-value=0.045 Score=63.73 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCcHHHHhhHHhHhcC-CceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT~a 55 (651)
..+++.|.+|+..++.. ..+++.+|+|||||-.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t 189 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT 189 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH
Confidence 35689999999999977 6788999999999943
No 182
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.73 E-value=0.058 Score=63.69 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=30.6
Q ss_pred HcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCcc
Q psy8712 19 EMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT 53 (651)
..++ .+++-|.+|+..++.++-+++.++.|||||
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKT 352 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKT 352 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHH
Confidence 3555 579999999999999999999999999999
No 183
>KOG4030|consensus
Probab=95.69 E-value=0.019 Score=52.85 Aligned_cols=154 Identities=26% Similarity=0.413 Sum_probs=104.2
Q ss_pred ccCceeeeccccccccccCCCCc-ccccccccccccccccccccCCceeEEEEEeccCCceeecccccccccc---CCCC
Q psy8712 85 ISPTWILSVWDRDTAMAITPEGL-RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRD---LGTD 160 (651)
Q Consensus 85 ~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---~g~~ 160 (651)
.+|+..|.+.--..-.-|-+.|. .| .-.|+-+|..+. +.|-|||++|..-|.--+|..|+...++ .|-|
T Consensus 25 e~P~V~LD~~hMG~dVvilk~g~Ric------GtGG~lAtaPlv-QnKsYFevkiQ~tG~WgiGlat~q~~l~~~p~g~d 97 (197)
T KOG4030|consen 25 EVPTVRLDVGHMGKDVVILKEGERIC------GTGGALATAPLV-QNKSYFEVKIQQTGTWGIGLATKQSPLDKVPGGCD 97 (197)
T ss_pred cCCcEEeehhccCCcEEEEecCcEEe------ccCceeeeeeee-cccceEEEEEeecceeeeeeeeccCccccCCCCCc
Confidence 34777776665554444444443 33 234555665554 6799999999999999999999999888 8899
Q ss_pred CCCCCcCCCCccCCCcccCcc--Cccc-CCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccc-cc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNY--GEAF-GMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKN-AE 236 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~--g~~~-~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~-~~ 236 (651)
..||+.-..|--.||.....- -..| ..|||+|.-.|.- ++.|--|||-+-.-|. -++. ++||.|-..| |-
T Consensus 98 ~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDHV--ELnfY~NGKn~e~p~~---gvRG-~vyPvvYVddsAI 171 (197)
T KOG4030|consen 98 EKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDHV--ELNFYVNGKNVEDPIT---GVRG-PVYPVVYVDDSAI 171 (197)
T ss_pred ceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeeeE--EEEEEEcCceeccccc---cccc-ceeeEEEeCCceE
Confidence 999999998888877543211 1112 4699999887753 5677788876654332 3444 8999998887 44
Q ss_pred cccccCCCCCCCCCCCC
Q psy8712 237 MSFNFGATPFKHEPPKD 253 (651)
Q Consensus 237 ~~~~f~~~~~~~~~~~~ 253 (651)
+.+-| ..|.+.||.+
T Consensus 172 LD~~f--~nF~h~PPpG 186 (197)
T KOG4030|consen 172 LDLKF--KNFTHAPPPG 186 (197)
T ss_pred EEEEe--cccccCCCCC
Confidence 44444 3455655543
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.64 E-value=0.091 Score=52.76 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=41.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhc---CCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILG---GGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~---g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|.-+--+.+|+=.++ .+ ....|.|.+.+..+.. |.+.+++.-.|.||| .-++|++..++.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKT-sVI~Pmla~~LA 67 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SN-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKT-SVIVPMLALALA 67 (229)
T ss_pred CCCchhChHHHHHHHH-cC-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCcc-chHHHHHHHHHc
Confidence 3444444444443332 23 3578999998888764 678999999999999 567888875544
No 185
>KOG1132|consensus
Probab=95.59 E-value=0.034 Score=64.46 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCcHHHHhhHHhHh----cCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 24 LPTDVQAEAIPLIL----GGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 24 ~pt~iQ~~aip~il----~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
.|.|.|..-+-.++ .+.+.++..|||||||++.+-..|....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q 66 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQ 66 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 68999998887776 4568999999999999888777766443
No 186
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.42 E-value=0.096 Score=63.40 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=30.1
Q ss_pred HcCCCCCcHHHHhhHHhHhcCCc-eEeeecCCCCccce
Q psy8712 19 EMDWLLPTDVQAEAIPLILGGGD-VLMAAETGSGKTGA 55 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a 55 (651)
+.|+ .+++-|.+||..++.+++ +++.+..|+|||..
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 3455 579999999999999776 57889999999953
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.32 E-value=0.15 Score=60.63 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC-CceEeeecCCCCcc
Q psy8712 8 GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG-GDVLMAAETGSGKT 53 (651)
Q Consensus 8 ~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT 53 (651)
++++..+...-+.++ .+++-|.+|+..++.+ +=+++.++.|+|||
T Consensus 337 ~~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKT 382 (744)
T TIGR02768 337 GVSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKS 382 (744)
T ss_pred CCCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHH
Confidence 355555554444444 4799999999999875 55789999999998
No 188
>KOG1002|consensus
Probab=94.40 E-value=0.071 Score=58.07 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=83.1
Q ss_pred eEEEecCCCCceeeeeccc-cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESAD-VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~-~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
-|.....|.|||.-++..+ + ...+...||++|+.+|+ |..+.+.++... .+++...+|. .......
T Consensus 207 GiLADEMGMGKTIQtIaLlla-------e~~ra~tLVvaP~VAlm-QW~nEI~~~T~g----slkv~~YhG~-~R~~nik 273 (791)
T KOG1002|consen 207 GILADEMGMGKTIQTIALLLA-------EVDRAPTLVVAPTVALM-QWKNEIERHTSG----SLKVYIYHGA-KRDKNIK 273 (791)
T ss_pred ceehhhhccchHHHHHHHHHh-------ccccCCeeEEccHHHHH-HHHHHHHHhccC----ceEEEEEecc-cccCCHH
Confidence 3444567899998766544 2 22334599999999975 556666666542 3666555554 3333333
Q ss_pred HhccCCcEEEECchhhHHHHhCCC--------c-----ccCCc--ceEeeccchhhhhccchHHHHHHHhcCCCccCCCC
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGH--------L-----SLTHC--RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~--------l-----~l~~l--~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~ 397 (651)
.| .+.|+|++|-..+...+++.. + .|.++ -.+|+||||.+-+.. ....+.+..|..
T Consensus 274 el-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~--snTArAV~~L~t------ 344 (791)
T KOG1002|consen 274 EL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ--SNTARAVFALET------ 344 (791)
T ss_pred Hh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc--ccHHHHHHhhHh------
Confidence 33 258999999988877765421 1 13333 368999999886532 112222222221
Q ss_pred ceeEEEEeeccChHHHHHHH
Q psy8712 398 RLQMIVCSATLHDFDVKKMA 417 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~ 417 (651)
....++|.|.-...|-++.
T Consensus 345 -t~rw~LSGTPLQNrigEly 363 (791)
T KOG1002|consen 345 -TYRWCLSGTPLQNRIGELY 363 (791)
T ss_pred -hhhhhccCCcchhhHHHHH
Confidence 3456788885443555443
No 189
>KOG0384|consensus
Probab=94.28 E-value=0.51 Score=56.91 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=83.8
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD 329 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~ 329 (651)
..+|.|-..-.|-|||+-.+..++.+.... .-.+|. ||++|.--+.. ..+.|.... . +++++..|.....+
T Consensus 388 ~~~n~ILADEmgLgktvqti~fl~~l~~~~-~~~gpf-lvvvplst~~~-W~~ef~~w~---~---mn~i~y~g~~~sr~ 458 (1373)
T KOG0384|consen 388 KRNNCILADEMGLGKTVQTITFLSYLFHSL-QIHGPF-LVVVPLSTITA-WEREFETWT---D---MNVIVYHGNLESRQ 458 (1373)
T ss_pred hcccceehhhcCCCcchHHHHHHHHHHHhh-hccCCe-EEEeehhhhHH-HHHHHHHHh---h---hceeeeecchhHHH
Confidence 456778888889999998776663332211 123444 67788765433 223333333 2 88888888876555
Q ss_pred HHHHhc----c-----CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 330 QMSVLS----S-----GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 330 q~~~L~----~-----~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.++..+ . .++++++|-+.++.- ...+.--.-++++|||||+|-+. ...+...+..+.. -.
T Consensus 459 ~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~-------~~ 527 (1373)
T KOG0384|consen 459 LIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKM-------NH 527 (1373)
T ss_pred HHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCch--HHHHHHHHHHhcc-------cc
Confidence 444321 1 379999998776431 11121123368999999998642 2223333444433 23
Q ss_pred EEEEeeccChHHHHHHH
Q psy8712 401 MIVCSATLHDFDVKKMA 417 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~ 417 (651)
-++.|.|.-...+..|.
T Consensus 528 rllitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 528 RLLITGTPLQNSLKELW 544 (1373)
T ss_pred eeeecCCCccccHHHHH
Confidence 45566664333555554
No 190
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.16 E-value=0.37 Score=58.94 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhc-CCceEeeecCCCCcc
Q psy8712 7 MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILG-GGDVLMAAETGSGKT 53 (651)
Q Consensus 7 l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~-g~dvl~~a~TGsGKT 53 (651)
.++.+..+++....++ .+++-|.+|+..+.. ++=+++.++-|+|||
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKT 411 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKT 411 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHH
Confidence 3566776766655554 579999999998864 455888999999999
No 191
>KOG1802|consensus
Probab=93.90 E-value=0.35 Score=54.77 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHH
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~ 63 (651)
.+...+...+..-|..|+..+|+..=-|+++|+|+|||.+-.--+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl 449 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHL 449 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHH
Confidence 455678888899999999999999999999999999997665444443
No 192
>KOG4439|consensus
Probab=93.86 E-value=0.049 Score=61.68 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc-----cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD-----VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~-----~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.-+|.+-|...+-|-|||..-+..+ +...+.......-.+|||||-. |..|.+.++.+-... ..++|.+.+
T Consensus 342 ~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~~rl~~---n~LsV~~~H 417 (901)
T KOG4439|consen 342 SQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVARRLEQ---NALSVYLYH 417 (901)
T ss_pred cCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHHHHHHHHhh---cceEEEEec
Confidence 3467777888889999998544333 1122211112222589999975 455555555443322 238888777
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHH----HHhCC--CcccCCc--ceEeeccchhhhh
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMED----LISGG--HLSLTHC--RFFVLDEADGLLK 375 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~----ll~~~--~l~l~~l--~~lViDEaD~ll~ 375 (651)
|....+-....|+ ..||||+|-.-+.. -...+ .-.+-+| ..||+||||.+-+
T Consensus 418 G~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 418 GPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred CCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 7664333334443 48999999654432 11111 1112233 4799999997754
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=93.78 E-value=0.1 Score=54.54 Aligned_cols=35 Identities=37% Similarity=0.378 Sum_probs=25.4
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhH
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l 61 (651)
+|+-|.++|.. ..+.++|.|..|||||.+-+-=++
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~ 35 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA 35 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH
Confidence 47889999988 788999999999999965543333
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=0.85 Score=49.49 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=32.4
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY 422 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~ 422 (651)
+.+.++++||++-+.-. ...+...+..+.... .....++++|||.....+.+.++.|..
T Consensus 213 l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~--~~~~~lLVLsAts~~~~l~evi~~f~~ 271 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGAD--TPVQRLLLLNATSHGDTLNEVVQAYRS 271 (374)
T ss_pred hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccC--CCCeEEEEecCccChHHHHHHHHHHHH
Confidence 45567888898754321 112223333322110 012457889999987666777776643
No 195
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=93.74 E-value=0.092 Score=54.70 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCCceeeeeccc--cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD--VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~--~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
...+++.-.++|.||.-...-.+ ..+ ....++|.++.+..|-....+-++.++... +.+..+..- ..
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l------~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~----i~v~~l~~~-~~ 129 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWL------RGRKRAVWVSVSNDLKYDAERDLRDIGADN----IPVHPLNKF-KY 129 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHH------cCCCceEEEECChhhhhHHHHHHHHhCCCc----ccceechhh-cc
Confidence 35678888888888876533222 221 234579999999999999999998887532 333332210 00
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCC---Cccc--------CC-cceEeeccchhhhhccc--------hHHHHHHHh
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGG---HLSL--------TH-CRFFVLDEADGLLKQGY--------GNLIDRMHK 387 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~---~l~l--------~~-l~~lViDEaD~ll~~gf--------~~~i~~il~ 387 (651)
. ....+ .-.||.+|-..|...-..+ .-.+ .+ =.+||+||||.+-+..- ...+..+.+
T Consensus 130 ~-~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~ 206 (303)
T PF13872_consen 130 G-DIIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQN 206 (303)
T ss_pred C-cCCCC--CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHH
Confidence 0 00112 2358888877665543211 1111 11 23899999998765321 234666777
Q ss_pred cCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 388 QIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 388 ~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
.||. .+++.+|||--. +.+++
T Consensus 207 ~LP~-------ARvvY~SATgas-ep~Nm 227 (303)
T PF13872_consen 207 RLPN-------ARVVYASATGAS-EPRNM 227 (303)
T ss_pred hCCC-------CcEEEecccccC-CCcee
Confidence 8876 679999999865 55544
No 196
>KOG0328|consensus
Probab=93.70 E-value=0.045 Score=55.70 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=36.2
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
|.+||+.||.+|..++.|-+. .+|.|+++++|+|||.++...
T Consensus 43 Y~yGfekPS~IQqrAi~~Ilk-------------------GrdViaQaqSGTGKTa~~si~ 84 (400)
T KOG0328|consen 43 YAYGFEKPSAIQQRAIPQILK-------------------GRDVIAQAQSGTGKTATFSIS 84 (400)
T ss_pred HHhccCCchHHHhhhhhhhhc-------------------ccceEEEecCCCCceEEEEee
Confidence 789999999999999865554 459999999999999998754
No 197
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.65 E-value=0.066 Score=62.63 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
..+.|+-+.||-|||.++++++.- ..-.+.-+.+++..--||.--.+++..+..+++ +++.++..+.+..++
T Consensus 93 h~g~iaEM~TGEGKTL~atlp~yl-----naL~gkgVhvVTvNdYLA~RDae~m~~l~~~LG---lsvG~~~~~m~~~ek 164 (822)
T COG0653 93 HLGDIAEMRTGEGKTLVATLPAYL-----NALAGKGVHVVTVNDYLARRDAEWMGPLYEFLG---LSVGVILAGMSPEEK 164 (822)
T ss_pred cCCceeeeecCCchHHHHHHHHHH-----HhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcC---CceeeccCCCChHHH
Confidence 357899999999999999987721 122344688899999999999999999988886 999999999987777
Q ss_pred HHHhccCCcEEEECchhh-HHHHhCCC------cccCCcceEeeccchhhh
Q psy8712 331 MSVLSSGVDIVVGTPGRM-EDLISGGH------LSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 331 ~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l~~l~~lViDEaD~ll 374 (651)
.... .+||..+|-..+ .|.++.+. .....+.+-|+||+|.++
T Consensus 165 ~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 165 RAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 6655 479999998887 44444331 124568899999999765
No 198
>KOG0327|consensus
Probab=93.59 E-value=0.029 Score=59.45 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=38.9
Q ss_pred ccccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 210 HLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 210 ~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.|++||+.||.+|..++.|+|.. .|.+++.++|+|||.++..++
T Consensus 41 iy~yGFekPSaIQqraI~p~i~G-------------------~dv~~qaqsgTgKt~af~i~i 84 (397)
T KOG0327|consen 41 IYAYGFEKPSAIQQRAILPCIKG-------------------HDVIAQAQSGTGKTAAFLISI 84 (397)
T ss_pred HHhhccCCchHHHhccccccccC-------------------CceeEeeeccccchhhhHHHH
Confidence 48999999999999999999986 488899999999999966543
No 199
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.35 E-value=0.021 Score=51.28 Aligned_cols=50 Identities=38% Similarity=0.438 Sum_probs=36.6
Q ss_pred CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
+.+++.+|||||||..++..+.+.... ......++++|+..+..+..+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~ 50 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERL 50 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHH
Confidence 368999999999999988888775543 11346888899877766655544
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.14 E-value=0.22 Score=54.09 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.6
Q ss_pred CcHHHHhhHHhH------hcCCceEeeecCCCCccc
Q psy8712 25 PTDVQAEAIPLI------LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 25 pt~iQ~~aip~i------l~g~dvl~~a~TGsGKT~ 54 (651)
+++-|++++..+ ..+..+++.++-|+|||.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~ 37 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF 37 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH
Confidence 567899998888 678899999999999993
No 201
>KOG0392|consensus
Probab=92.94 E-value=0.23 Score=59.70 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCeEEEecCCCCceeeeec--cc-cccCCccccCCCCe-EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 252 KDYIAVCNAPKQNVKHSES--AD-VSAGPVKLVNNAPQ-AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~--a~-~~~~~~~~~~~~p~-aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
-.-|-|.+.|-|||.=++- |. ....+.....-.+. .||+||. .|+--...++.+|..+ +++...+|+-..
T Consensus 995 LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf-----L~v~~yvg~p~~ 1068 (1549)
T KOG0392|consen 995 LHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF-----LKVLQYVGPPAE 1068 (1549)
T ss_pred ccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch-----hhhhhhcCChHH
Confidence 3468999999999975433 22 22222222222333 8999997 4666556666666543 667777776665
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeec
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SAT 407 (651)
....+.--++.+|+|++-+.+.+-+. .+.-.+-.++|+||-|.|=+. ...+-+.++.+.. -..+.+|.|
T Consensus 1069 r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a-------~hRLILSGT 1137 (1549)
T KOG0392|consen 1069 RRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA-------NHRLILSGT 1137 (1549)
T ss_pred HHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHhh-------cceEEeeCC
Confidence 55544444568999999876642110 011123459999999987542 2334445555544 244667788
Q ss_pred cChHHHHHHHH
Q psy8712 408 LHDFDVKKMAE 418 (651)
Q Consensus 408 l~~~~v~~l~~ 418 (651)
.-..+|.++..
T Consensus 1138 PIQNnvleLWS 1148 (1549)
T KOG0392|consen 1138 PIQNNVLELWS 1148 (1549)
T ss_pred CcccCHHHHHH
Confidence 64445555443
No 202
>KOG0921|consensus
Probab=92.81 E-value=0.24 Score=57.73 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=25.4
Q ss_pred cEEEECchhhHHHHhCCCcccCCcceEeeccchhh
Q psy8712 339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL 373 (651)
Q Consensus 339 dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l 373 (651)
-|..+|-+-++.++.++ +..+.++|+||.|..
T Consensus 474 ~i~fctvgvllr~~e~g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENG---LRGISHVIIDEIHER 505 (1282)
T ss_pred ceeeeccchhhhhhhhc---ccccccccchhhhhh
Confidence 58888988888877765 456779999999954
No 203
>PF13245 AAA_19: Part of AAA domain
Probab=92.63 E-value=0.067 Score=44.27 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=37.1
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQI 304 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~ 304 (651)
+++.+..|+|||......++......... +.++++++||+..+.++.+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 56699999999977666553333211222 668999999999999988887
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.46 E-value=0.093 Score=47.43 Aligned_cols=20 Identities=0% Similarity=-0.178 Sum_probs=14.6
Q ss_pred CeEEEecCCCCceeeeeccc
Q psy8712 253 DYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~ 272 (651)
-.++.+.+|+|||.......
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHH
Confidence 46788999999999865544
No 205
>KOG1805|consensus
Probab=92.44 E-value=0.45 Score=56.15 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCc-eEeeecCCCCccceeehhhHHHHHH
Q psy8712 8 GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGD-VLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 8 ~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.+.|.+.+. -...+..-|++|+-.+|..+| .++.+-+|+|||-.-+ -++++++.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~ 711 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA 711 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH
Confidence 355665554 234678899999999999887 5778999999995433 34444443
No 206
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=92.42 E-value=0.29 Score=58.28 Aligned_cols=82 Identities=13% Similarity=0.004 Sum_probs=62.5
Q ss_pred cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh-----
Q psy8712 336 SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD----- 410 (651)
Q Consensus 336 ~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~----- 410 (651)
....|++.||..|..-+-.+.++++.|..|||||||++.+..-...|.++++.-.+ ..=+.+|||....
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~------~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK------TGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC------CcceEEecCCCcccccch
Confidence 34679999999998777788899999999999999999876555567777766544 4679999999764
Q ss_pred HHHHHHHHHhccC
Q psy8712 411 FDVKKMAERLMYF 423 (651)
Q Consensus 411 ~~v~~l~~~~l~~ 423 (651)
..+....+.+.-.
T Consensus 80 ~~l~~vmk~L~i~ 92 (814)
T TIGR00596 80 SPLETKMRNLFLR 92 (814)
T ss_pred HHHHHHHHHhCcC
Confidence 2355555555433
No 207
>KOG1477|consensus
Probab=92.37 E-value=0.08 Score=58.95 Aligned_cols=63 Identities=37% Similarity=0.577 Sum_probs=47.7
Q ss_pred cCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccc--cccccccCCCCCC
Q psy8712 181 YGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKN--AEMSFNFGATPFK 247 (651)
Q Consensus 181 ~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~--~~~~~~f~~~~~~ 247 (651)
||+-|+.||+|||.+|+-++...|+|||.++|.+|-.|... ++|.+.++- -.+..||+.-+|.
T Consensus 20 ~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~----~~~dvg~~~~~~~~~~N~~~~~Fe 84 (469)
T KOG1477|consen 20 YGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPAL----LYHDVGVVQAGEPLPANFGIYYFE 84 (469)
T ss_pred cCCcCCccccccceEeccCCceeEEEEcCCcceeeecCccc----cCCCcceeeCCCCCCcccccceee
Confidence 89999999999999999999999999999999999988655 444444332 2333344444433
No 208
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=92.25 E-value=0.46 Score=56.61 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=77.9
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCC
Q psy8712 5 EEMGVLPEIGKAVE-----EMDWLLP---TDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKG 76 (651)
Q Consensus 5 ~~l~l~~~l~~~l~-----~~~~~~p---t~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~ 76 (651)
+.+++.+++.+++. .+||..| ||+|.++||.++.++|+++.|+||||||+||+||+++.++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 57889999999998 7999999 99999999999999999999999999999999999987754
Q ss_pred CCCCccccccCceeeeccccccccccC
Q psy8712 77 QGKAKAQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 77 ~~~~~~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
...+.+++|+.+|+.++.+....+.
T Consensus 135 --g~~v~IVTpTrELA~Qdae~m~~L~ 159 (970)
T PRK12899 135 --GKPVHLVTVNDYLAQRDCEWVGSVL 159 (970)
T ss_pred --cCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 1236788999999999999887764
No 209
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.06 E-value=0.42 Score=57.82 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=70.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l 357 (651)
.++-|+.+|.|-.+=..++.+.++.+-. ..++.+..|-.+..+..+.+ ....||+|||. +-...+
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVP-----EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGI 869 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVP-----EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGI 869 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCC-----ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCc
Confidence 4567999999999988888888888764 58888888877765544333 35789999995 556678
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
+..+...+||+-||++- ..++.++-.+.-
T Consensus 870 DIPnANTiIIe~AD~fG----LsQLyQLRGRVG 898 (1139)
T COG1197 870 DIPNANTIIIERADKFG----LAQLYQLRGRVG 898 (1139)
T ss_pred CCCCCceEEEecccccc----HHHHHHhccccC
Confidence 89999999999999762 234444544443
No 210
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.84 E-value=0.98 Score=49.34 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEe-CC-HHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIE-PS-RELAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~-PT-reLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~ 326 (651)
..|..++.++.+|+|||++....++...... ...+..+.++. -| |.-+.. +++.++..++ +.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lg---vpv-------- 236 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMG---IPV-------- 236 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHH---HHHHHhhcCC---cce--------
Confidence 3467889999999999998765442221110 01222333333 22 222221 2333333222 211
Q ss_pred HHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 327 VKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 327 ~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.++-++..+...+. .+++.++|+||++.++.... ....+..++..... . .--++.+|
T Consensus 237 -------------~~~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~---~--~e~~LVls 294 (388)
T PRK12723 237 -------------KAIESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR---D--AEFHLAVS 294 (388)
T ss_pred -------------EeeCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC---C--CeEEEEEc
Confidence 11223333433332 24678899999998875321 22344444444322 0 13678999
Q ss_pred eccChHHHHHHHHHhc
Q psy8712 406 ATLHDFDVKKMAERLM 421 (651)
Q Consensus 406 ATl~~~~v~~l~~~~l 421 (651)
||....++.+....+-
T Consensus 295 at~~~~~~~~~~~~~~ 310 (388)
T PRK12723 295 STTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9998767777777763
No 211
>KOG0335|consensus
Probab=91.45 E-value=0.22 Score=54.88 Aligned_cols=289 Identities=19% Similarity=0.228 Sum_probs=187.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCC-CCCc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQ-GKAK 81 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~-~~~~ 81 (651)
.|.+-.++..+...++..|+..|||||+.+||.|.+|+|++++|+||||||.||++|++..+.+.-......... +.++
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 467777888899999999999999999999999999999999999999999999999999988743332222222 3578
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
+++++|++||..|.+....-++.. +.-
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~-----------------------------------------------------s~~ 181 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYL-----------------------------------------------------SGM 181 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhccc-----------------------------------------------------ccc
Confidence 999999999999988877555421 011
Q ss_pred CCC-CcCCCCccCCCcccCccCcccCCCccc----cccccc-CCceeeeeccCcc--------cc-cccccc--------
Q psy8712 162 FGF-GFGGTGKKSNNKQFDNYGEAFGMHDVI----GCLLDL-DNMTVAFTKNGQH--------LG-LAFNIS-------- 218 (651)
Q Consensus 162 ~~~-~~gg~~~ks~~~~~~~~g~~~~~~d~i----g~~~~~-~~~~~~~~~ng~~--------~g-~af~~~-------- 218 (651)
.+. .|||+.--++.+. ...-=|++ |.|.|+ +.|.|++...+.. +. |+|..+
T Consensus 182 ~~~~~ygg~~~~~q~~~------~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~ 255 (482)
T KOG0335|consen 182 KSVVVYGGTDLGAQLRF------IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQL 255 (482)
T ss_pred eeeeeeCCcchhhhhhh------hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhccc
Confidence 111 3555322221111 11111333 999997 9999999999866 56 888653
Q ss_pred ----hhhhhccCcchhhcccccc-ccccCCCCCCCCCCCCeEEEecCCCCceee-----eeccc-------cccC-----
Q psy8712 219 ----QQLKNSAFYPAVVLKNAEM-SFNFGATPFKHEPPKDYIAVCNAPKQNVKH-----SESAD-------VSAG----- 276 (651)
Q Consensus 219 ----~~~~~~~~~p~~~~k~~~~-~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~-----~~~a~-------~~~~----- 276 (651)
...+...+|+|...++..- .+.|-... -.+++.+..|+.--.+ ++--. -.+.
T Consensus 256 ~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~------yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~ 329 (482)
T KOG0335|consen 256 GMPPKNNRQTLLFSATFPKEIQRLAADFLKDN------YIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGP 329 (482)
T ss_pred CCCCccceeEEEEeccCChhhhhhHHHHhhcc------ceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCC
Confidence 2233345555555554321 12221111 3466666666433222 22110 0000
Q ss_pred CccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc---c-CCcEEEECchhhHHHH
Q psy8712 277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS---S-GVDIVVGTPGRMEDLI 352 (651)
Q Consensus 277 ~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~---~-~~dIlV~TP~rL~~ll 352 (651)
..+.....-..+|.+-|+.-|.++...+.... ++...+.|.....++.+.|. . .++++|+|- +
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-------~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~------V 396 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNG-------YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN------V 396 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCC-------CCceeecchhhhhHHHHHHHHhhcCCcceEEEeh------h
Confidence 01111112368888999998888887775543 66677777777666655553 2 589999994 5
Q ss_pred hCCCcccCCcceEeecc
Q psy8712 353 SGGHLSLTHCRFFVLDE 369 (651)
Q Consensus 353 ~~~~l~l~~l~~lViDE 369 (651)
...-++.++|+++|.=+
T Consensus 397 aaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 397 AARGLDIPNVKHVINYD 413 (482)
T ss_pred hhcCCCCCCCceeEEee
Confidence 56678899999998755
No 212
>KOG1001|consensus
Probab=91.43 E-value=0.55 Score=54.73 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCCCCCCCCeEEEecCCCCceeeeeccccccCCccc----cCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 245 PFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKL----VNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 245 ~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~----~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
++..++-.+.|..-+.|-|||+.++..+........ .......||++|+-- ..|...++.+..+ ...+.+.+
T Consensus 146 ~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~-~~qW~~elek~~~---~~~l~v~v 221 (674)
T KOG1001|consen 146 SREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSL-LTQWKTELEKVTE---EDKLSIYV 221 (674)
T ss_pred ccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHH-HHHHHHHHhccCC---ccceEEEE
Confidence 446678888999999999999988776622222111 234567788888754 4444444433332 23467766
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.+|..... ......|||++|++.+.. ..+.--.--.+|+||||.+-...- +.-...-.+. ...
T Consensus 222 ~~gr~kd~----~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~t--q~~~a~~~L~-------a~~ 284 (674)
T KOG1001|consen 222 YHGRTKDK----SELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDT--QIFKAVCQLD-------AKY 284 (674)
T ss_pred eccccccc----chhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcch--Hhhhhheeec-------cce
Confidence 66611111 112457899999977652 111112223789999998865321 1111222221 134
Q ss_pred EEEEeeccChHHHHHHH
Q psy8712 401 MIVCSATLHDFDVKKMA 417 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~ 417 (651)
--.+|+|.....+.++.
T Consensus 285 RWcLtgtPiqn~~~~ly 301 (674)
T KOG1001|consen 285 RWCLTGTPIQNNLDELY 301 (674)
T ss_pred eeeecCChhhhhHHHHH
Confidence 45678886554444443
No 213
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=90.99 E-value=0.47 Score=56.92 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=88.4
Q ss_pred eEeeccchhhhhc---cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE
Q psy8712 364 FFVLDEADGLLKQ---GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH 440 (651)
Q Consensus 364 ~lViDEaD~ll~~---gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~ 440 (651)
..-.|.-|.++.. .|...+..+...-.. ..++++-|.++. .-++..+++.. ..|.
T Consensus 597 ~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~------GrPVLVGT~SVe---~SE~lS~~L~~-------------~gI~ 654 (1112)
T PRK12901 597 IARKDKEDLVYKTKREKYNAVIEEITELSEA------GRPVLVGTTSVE---ISELLSRMLKM-------------RKIP 654 (1112)
T ss_pred cceecCCCeEecCHHHHHHHHHHHHHHHHHC------CCCEEEEeCcHH---HHHHHHHHHHH-------------cCCc
Confidence 3445777766532 233444444444333 456777666653 33333334322 1233
Q ss_pred EEEEEeCcchHHHHHHHhhccccceeeccccccCCCCCC--------CCCEEEEeCCCCChhhhhhhcCccccCCCceEE
Q psy8712 441 HVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDIS--------GLPFIINMTLPDDKANYVHRIGRVGRAERMGLA 512 (651)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~td~~~rGIDip--------~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~a 512 (651)
|.+.......++...-...+..-.+..+|+.+.||-||. +==+||--..|.|..---|-.||+||-|.+|.+
T Consensus 655 H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 655 HNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred HHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcc
Confidence 333333322333333335666777888999999999997 223799999999999999999999999999999
Q ss_pred EEeeeCCcccc
Q psy8712 513 ISLVSTVPEKV 523 (651)
Q Consensus 513 i~lv~~~de~~ 523 (651)
-.|++-+|+..
T Consensus 735 ~f~lSLEDdLm 745 (1112)
T PRK12901 735 QFYVSLEDNLM 745 (1112)
T ss_pred eEEEEcccHHH
Confidence 99999887665
No 214
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=90.48 E-value=0.65 Score=54.66 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+++-|.+|+.. ..+.++|.|..|||||.+-
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL 32 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI 32 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH
Confidence 478999999875 3578999999999999663
No 215
>PRK06526 transposase; Provisional
Probab=90.37 E-value=0.62 Score=47.93 Aligned_cols=22 Identities=0% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.+.|++..++.|+|||..+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHH
Confidence 4578999999999999987643
No 216
>PRK06893 DNA replication initiation factor; Validated
Probab=90.32 E-value=0.48 Score=47.86 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=29.5
Q ss_pred cCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 359 LTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+.+.++|||||+|.+... .....+..+++.+... +.+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-----~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-----GKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-----CCcEEEEeCCCCh
Confidence 356789999999988632 2233445555544321 3467788888765
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.14 E-value=0.3 Score=49.57 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=31.4
Q ss_pred ccccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeee
Q psy8712 210 HLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 210 ~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.+..+|..|....-+.|.+. .|..+.- .-......+..+..+..+..|+|||....
T Consensus 8 Ql~l~~~~~~~~~fd~f~~~---~n~~a~~-~l~~~~~~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 8 QLSLPLYLPDDETFASFYPG---DNDSLLA-ALQNALRQEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred ceecCCCCCCcCCccccccC---ccHHHHH-HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 45556666666665666554 2322211 11111122334578999999999999654
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=90.10 E-value=1.8 Score=47.96 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
..|-......+..+..++++++.+++|+|||.
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~ 209 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTF 209 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHH
Confidence 34556667778888899999999999999993
No 219
>KOG0342|consensus
Probab=89.97 E-value=0.036 Score=60.42 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=115.0
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
.+++++|++||++|.+.++.++-.- ++. -
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~---------------------------h~~------------------------~ 184 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKY---------------------------HES------------------------I 184 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhh---------------------------CCC------------------------c
Confidence 4678999999999999998877421 000 0
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCccc---cccccc-CCceeeeeccCcc---------ccccccc---------c
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVI---GCLLDL-DNMTVAFTKNGQH---------LGLAFNI---------S 218 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~i---g~~~~~-~~~~~~~~~ng~~---------~g~af~~---------~ 218 (651)
-++..-|||..+........ +.+.+| |+|+|. ++-..++++|=+. +.++|+. |
T Consensus 185 ~v~~viGG~~~~~e~~kl~k-----~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp 259 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVK-----GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP 259 (543)
T ss_pred ceEEEeCCccchHHHHHhhc-----cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcc
Confidence 01234567665544443333 567777 999995 7777788999855 6888864 4
Q ss_pred hhhhhccCcchhhccc---ccccc----cc-----CCCCCCC-CCCCCeEEEecCCCCceeeeeccccccCCccccCCCC
Q psy8712 219 QQLKNSAFYPAVVLKN---AEMSF----NF-----GATPFKH-EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAP 285 (651)
Q Consensus 219 ~~~~~~~~~p~~~~k~---~~~~~----~f-----~~~~~~~-~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p 285 (651)
...|.-.|.+++..|- +..+. -| +..+-.+ .-++.++++.. .+- +..+...+ +...+..
T Consensus 260 k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~---~~~--f~ll~~~L---Kk~~~~~ 331 (543)
T KOG0342|consen 260 KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS---DSR--FSLLYTFL---KKNIKRY 331 (543)
T ss_pred ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc---cch--HHHHHHHH---HHhcCCc
Confidence 4444444433333221 11000 00 0011111 12222333221 111 11111111 1122237
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
+++|.+||---+.-+++.++ +++ +.|..+.|+.+....-... +...-|+|||- +....+++.+
T Consensus 332 KiiVF~sT~~~vk~~~~lL~----~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTD------VaARGlD~P~ 398 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLN----YID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTD------VAARGLDIPD 398 (543)
T ss_pred eEEEEechhhHHHHHHHHHh----hcC---CchhhhhcCCcccccchHHHHHhhcccceEEecc------hhhccCCCCC
Confidence 89999999887777776665 333 8888888887643332221 23568999993 4445567777
Q ss_pred cceEe
Q psy8712 362 CRFFV 366 (651)
Q Consensus 362 l~~lV 366 (651)
|.+||
T Consensus 399 V~~Vv 403 (543)
T KOG0342|consen 399 VDWVV 403 (543)
T ss_pred ceEEE
Confidence 77776
No 220
>KOG0338|consensus
Probab=89.93 E-value=0.058 Score=59.07 Aligned_cols=212 Identities=14% Similarity=0.207 Sum_probs=118.2
Q ss_pred CccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCC
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGT 159 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~ 159 (651)
.++++++|++||++|.++.+..+.. .+-.+-|||
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaq-------------------------------Ft~I~~~L~--------------- 286 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQ-------------------------------FTDITVGLA--------------- 286 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHh-------------------------------hccceeeee---------------
Confidence 4789999999999999998877741 011122344
Q ss_pred CCCCCCcCCCCccCCCcccCccCcccCCCccc----ccccccCCceeeeeccCc----------ccccccc---------
Q psy8712 160 DRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVI----GCLLDLDNMTVAFTKNGQ----------HLGLAFN--------- 216 (651)
Q Consensus 160 ~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~i----g~~~~~~~~~~~~~~ng~----------~~g~af~--------- 216 (651)
.||-.-|+++--.. ...||+ |+|||.-.+.-+|.-.-- -|..+|.
T Consensus 287 ------vGGL~lk~QE~~LR------s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 287 ------VGGLDLKAQEAVLR------SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred ------ecCccHHHHHHHHh------hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 34444444432222 234777 999998777777765432 2555663
Q ss_pred cchhhhhccCcchhhccc---cccccccCCCCCCCC-------CCCCeEEEecCCCCceeeeeccccccCCccccCCCCe
Q psy8712 217 ISQQLKNSAFYPAVVLKN---AEMSFNFGATPFKHE-------PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQ 286 (651)
Q Consensus 217 ~~~~~~~~~~~p~~~~k~---~~~~~~f~~~~~~~~-------~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~ 286 (651)
+|..-|.--|.++...+- +.++.+=.-.-|.-| ..+.||-.-..--|-..+.+.++... .-.-+
T Consensus 355 cpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~r------tf~~~ 428 (691)
T KOG0338|consen 355 CPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITR------TFQDR 428 (691)
T ss_pred ccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHH------hcccc
Confidence 366666555555544332 222222110001111 11222222222222222222222111 11346
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
++|.+-|+.-|..+.=.+-.++ +++.-+.|.-+..+....|.. .+|+||+|- +....++...|
T Consensus 429 ~ivFv~tKk~AHRl~IllGLlg-------l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD------vAsRGLDI~gV 495 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRILLGLLG-------LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD------VASRGLDIEGV 495 (691)
T ss_pred eEEEEehHHHHHHHHHHHHHhh-------chhhhhcccccHHHHHHHHHHHHhccCCEEEEec------hhhccCCccce
Confidence 8888888877765544443333 899999999888887777653 799999993 55566777888
Q ss_pred ceEeec
Q psy8712 363 RFFVLD 368 (651)
Q Consensus 363 ~~lViD 368 (651)
..+|==
T Consensus 496 ~tVINy 501 (691)
T KOG0338|consen 496 QTVINY 501 (691)
T ss_pred eEEEec
Confidence 877733
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=89.10 E-value=0.55 Score=47.66 Aligned_cols=45 Identities=9% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 360 THCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.++++||||++|.+... .....+-.+++.+... +.+ ++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-----g~~-ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS-----GRR-LLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc-----CCE-EEEeCCCCH
Confidence 45678999999977532 2344566677665441 234 566666554
No 222
>KOG0391|consensus
Probab=88.94 E-value=0.84 Score=54.82 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=83.9
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH-
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV- 327 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~- 327 (651)
...-|-|...-.|-|||.-.+..++++-.... +=+|. ||+|||--+-+ ..-.++++. |++++...+|....
T Consensus 632 eknlNGILADEmGLGKTIQtISllAhLACeeg-nWGPH-LIVVpTsviLn-WEMElKRwc-----PglKILTYyGs~kEr 703 (1958)
T KOG0391|consen 632 EKNLNGILADEMGLGKTIQTISLLAHLACEEG-NWGPH-LIVVPTSVILN-WEMELKRWC-----PGLKILTYYGSHKER 703 (1958)
T ss_pred HhcccceehhhhcccchhHHHHHHHHHHhccc-CCCCc-eEEeechhhhh-hhHHHhhhC-----CcceEeeecCCHHHH
Confidence 34456677788999999987766655544322 22444 78889865432 233444443 46999999987653
Q ss_pred HHHHHHhc--cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 328 KDQMSVLS--SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 328 ~~q~~~L~--~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
+..++.+. +..||.|++-..+..-+. .+.-++-+++||||||.+-++. ....+.+++.-. .|.++++
T Consensus 704 keKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfns--------qrRLLLt 772 (1958)
T KOG0391|consen 704 KEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFNS--------QRRLLLT 772 (1958)
T ss_pred HHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh-HHHHHHHhccch--------hheeeec
Confidence 22222222 246999988665544322 2223556799999999986542 122444544322 3567777
Q ss_pred ecc
Q psy8712 406 ATL 408 (651)
Q Consensus 406 ATl 408 (651)
.|.
T Consensus 773 gTP 775 (1958)
T KOG0391|consen 773 GTP 775 (1958)
T ss_pred CCc
Confidence 773
No 223
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.73 E-value=0.27 Score=51.06 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=28.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
+|++||++|-+.+.++. ..+=|||.+|||||||-. +..++..+.+
T Consensus 107 ~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 107 TLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 46777776666653321 235589999999999944 3455555544
No 224
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.40 E-value=0.33 Score=52.71 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=19.1
Q ss_pred cCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
.++-+++++||||||| .++-.+++.+.
T Consensus 148 ~~GlilI~G~TGSGKT-T~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKS-TLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHH-HHHHHHHHHHH
Confidence 4567999999999999 33344454443
No 225
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=88.39 E-value=0.31 Score=47.17 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=54.3
Q ss_pred EEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH-HHHh
Q psy8712 256 AVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ-MSVL 334 (651)
Q Consensus 256 ~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q-~~~L 334 (651)
..++-|-|||.+.-++++..... ....++|-+|+.+-++.+++.+..-.+.++ .+... ...... ....
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~---~~~~~----~~~~~~~~~~~ 70 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKALG---YKEEK----KKRIGQIIKLR 70 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhccccc---ccccc----ccccccccccc
Confidence 45788999999988777554432 225789999999988887776654433221 11100 000000 0000
Q ss_pred ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 335 SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 335 ~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.....|-.-.|..+... ....++||||||=.+ ..+.+.++++.. ..++||.|.+.
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~----------~~vv~stTi~G 125 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRF----------PRVVFSTTIHG 125 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----------SEEEEEEEBSS
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhC----------CEEEEEeeccc
Confidence 11344555555443211 123589999998654 345566665443 34678888754
No 226
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.94 E-value=0.37 Score=47.77 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=32.1
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.--|+-|..++.+++...=|++.+|.|||||+.-+.-.++.+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 34588999999999977888999999999997777667666544
No 227
>PRK11054 helD DNA helicase IV; Provisional
Probab=87.79 E-value=2.5 Score=49.75 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=28.9
Q ss_pred HHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.++...-..+|+-|++|+-. ..+.++|.|..|||||.+-
T Consensus 188 ~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl 226 (684)
T PRK11054 188 FFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL 226 (684)
T ss_pred HHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH
Confidence 33444445789999999853 4467899999999999543
No 228
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=87.71 E-value=1 Score=53.53 Aligned_cols=32 Identities=38% Similarity=0.411 Sum_probs=26.5
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
..++|-|.+|+.. ..+.++|.|..|||||-+-
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L 34 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL 34 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH
Confidence 3589999999865 3578999999999999663
No 229
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.65 E-value=0.63 Score=46.21 Aligned_cols=40 Identities=18% Similarity=0.023 Sum_probs=23.2
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre 295 (651)
-.++.+.+|+|||..++.++..... ....-+.+|.-|+.+
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~---~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVK---EGEYDKIIITRPPVE 60 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHH---TTS-SEEEEEE-S--
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH---hCCCcEEEEEecCCC
Confidence 4788999999999998877633221 133446777777765
No 230
>PRK10436 hypothetical protein; Provisional
Probab=87.30 E-value=0.49 Score=52.90 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHhhHHhHh--cCCceEeeecCCCCccce
Q psy8712 27 DVQAEAIPLIL--GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 27 ~iQ~~aip~il--~g~dvl~~a~TGsGKT~a 55 (651)
+-|.+.+..++ .++-+++++|||||||-.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 33444444333 567899999999999954
No 231
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=86.42 E-value=1.3 Score=52.60 Aligned_cols=31 Identities=39% Similarity=0.448 Sum_probs=26.2
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.++|-|.+|+... .+.++|.|..|||||.+-
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl 39 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVL 39 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHH
Confidence 5899999998753 578999999999999654
No 232
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.24 E-value=2.9 Score=53.16 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCcHHHHhhHHhHhcC--CceEeeecCCCCccc
Q psy8712 24 LPTDVQAEAIPLILGG--GDVLMAAETGSGKTG 54 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~ 54 (651)
.+|+-|.+|+..+|.. +=+++.+..|+|||.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT 867 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTT 867 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHH
Confidence 6899999999999966 668999999999993
No 233
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=86.21 E-value=0.77 Score=48.84 Aligned_cols=44 Identities=34% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCccceeehhhHH
Q psy8712 16 AVEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.|.+.|+ .++.|.+.+.. +..++.++++++|||||| .++-.++.
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~ 170 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIIN 170 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHH
Confidence 3444465 45677777765 467889999999999999 55444444
No 234
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.20 E-value=2.3 Score=52.94 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcccc
Q psy8712 11 PEIGKAVEEMDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQV 84 (651)
Q Consensus 11 ~~l~~~l~~~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (651)
++..+..+.++| .||++|.+|||.++.+ .|++++|+||||||.+|+++++..+.. +.++++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~------------g~qvlv 654 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN------------HKQVAV 654 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 345566678899 6999999999999987 899999999999999999888765432 457999
Q ss_pred ccCceeeeccccccccc
Q psy8712 85 ISPTWILSVWDRDTAMA 101 (651)
Q Consensus 85 ~~p~~~l~~~~~~~~~~ 101 (651)
++|+.+|+.|.......
T Consensus 655 LvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred EeCcHHHHHHHHHHHHH
Confidence 99999999988776543
No 235
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.95 E-value=1.5 Score=43.92 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=16.2
Q ss_pred CCCCeEEEecCCCCceeeee
Q psy8712 250 PPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~ 269 (651)
....++..+..|+|||..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45678999999999998643
No 236
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.82 E-value=1.2 Score=44.60 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=30.3
Q ss_pred cCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 359 LTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+...++|+||++|.+... .....+-.+++.+... +.|+|+.|...|.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~-----~k~li~ts~~~P~ 142 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES-----GKQLILTSDRPPS 142 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT-----TSEEEEEESS-TT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh-----CCeEEEEeCCCCc
Confidence 568899999999998653 2234455555555431 4577777766654
No 237
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.71 E-value=1.2 Score=48.52 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=19.8
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
...+.+.+..+..|+|||.+.-..+
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999865544
No 238
>PRK04296 thymidine kinase; Provisional
Probab=85.63 E-value=0.27 Score=48.17 Aligned_cols=34 Identities=3% Similarity=-0.011 Sum_probs=20.7
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeC
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEP 292 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~P 292 (651)
.+..+..|+|||+.+...+... ...+.+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~-----~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY-----EERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH-----HHcCCeEEEEec
Confidence 3556777999998776554211 112446777766
No 239
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.60 E-value=4.3 Score=48.50 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=16.8
Q ss_pred CCCCCe-EEEecCCCCceeeeecc
Q psy8712 249 EPPKDY-IAVCNAPKQNVKHSESA 271 (651)
Q Consensus 249 ~~~~~~-i~~~~~gsGKT~~~~~a 271 (651)
..+.+. .+.+..|+|||.+.-..
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHHHH
Confidence 444455 48999999999985543
No 240
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.47 E-value=2.3 Score=38.15 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=17.0
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.....+..+..|+|||..+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4567899999999999865443
No 241
>PRK08181 transposase; Validated
Probab=85.44 E-value=2.8 Score=43.50 Aligned_cols=22 Identities=0% Similarity=-0.074 Sum_probs=18.3
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
...|++..+++|+|||..+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHH
Confidence 4578999999999999986643
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.42 E-value=1.6 Score=45.74 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=33.6
Q ss_pred CCCCCCeEEEecCCCCceeeeecccc-ccCCccc-cCCCCeEEEEeCCHHHHHHHHHHH
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESADV-SAGPVKL-VNNAPQAIIIEPSRELAEQTFNQI 304 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~~-~~~~~~~-~~~~p~aLIL~PTreLa~Qi~~~~ 304 (651)
...++|.+.+++++.|||.+.-.... .-..... ...-|-+.|-+|...=..-.+..+
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 34667899999999999997644331 1111111 122366677777765555555544
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=85.40 E-value=4.8 Score=43.13 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=36.8
Q ss_pred HcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHH
Q psy8712 19 EMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
..|+.--..-|.-|+.++|.- .=|-+.+.-|||||+-.+...|..+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 367777777888888888865 347788999999997766666666666
No 244
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.31 E-value=0.56 Score=50.75 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.4
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.++-|++++|||||||-
T Consensus 133 ~~glilI~GpTGSGKTT 149 (358)
T TIGR02524 133 QEGIVFITGATGSGKST 149 (358)
T ss_pred cCCEEEEECCCCCCHHH
Confidence 57889999999999994
No 245
>PF13245 AAA_19: Part of AAA domain
Probab=85.27 E-value=0.5 Score=39.04 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=16.7
Q ss_pred hhHHhHhcCCceE-eeecCCCCccce
Q psy8712 31 EAIPLILGGGDVL-MAAETGSGKTGA 55 (651)
Q Consensus 31 ~aip~il~g~dvl-~~a~TGsGKT~a 55 (651)
+||...+.+..++ +.||.|||||..
T Consensus 1 ~av~~al~~~~~~vv~g~pGtGKT~~ 26 (76)
T PF13245_consen 1 EAVRRALAGSPLFVVQGPPGTGKTTT 26 (76)
T ss_pred CHHHHHHhhCCeEEEECCCCCCHHHH
Confidence 3555344455555 599999999944
No 246
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.23 E-value=2.6 Score=51.28 Aligned_cols=82 Identities=23% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 8 GVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 8 ~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
..+.++.+.+.+ ++| .|||+|.+||+.|+.+ .|++++|+||||||.+|++|+++.+.. +.
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------g~ 501 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------GK 501 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------------CC
Confidence 345566666655 688 5999999999999985 799999999999999999999987654 45
Q ss_pred ccccccCceeeecccccccccc
Q psy8712 81 KAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
++++++|+.+|+.|........
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHH
Confidence 7999999999999988776554
No 247
>PRK08727 hypothetical protein; Validated
Probab=84.81 E-value=1.6 Score=44.10 Aligned_cols=18 Identities=6% Similarity=-0.222 Sum_probs=15.0
Q ss_pred CeEEEecCCCCceeeeec
Q psy8712 253 DYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~ 270 (651)
-++..+.+|+|||..+..
T Consensus 43 ~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA 60 (233)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999987553
No 248
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=84.69 E-value=1.7 Score=52.39 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=74.3
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCee-EEEEeCCccH-
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR-ELLIIGGVNV- 327 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~-v~~l~Gg~~~- 327 (651)
...+.+.....|.|||.-++..+....... ....+.++|++|+- ++.+..+.+.++... ++ +....|....
T Consensus 357 ~~~~~ilaD~mglGKTiq~i~~l~~~~~~~-~~~~~~~liv~p~s-~~~nw~~e~~k~~~~-----~~~~~~~~g~~~~~ 429 (866)
T COG0553 357 NLLGGILADDMGLGKTVQTIALLLSLLESI-KVYLGPALIVVPAS-LLSNWKREFEKFAPD-----LRLVLVYHGEKSEL 429 (866)
T ss_pred ccCCCcccccccchhHHHHHHHHHhhhhcc-cCCCCCeEEEecHH-HHHHHHHHHhhhCcc-----ccceeeeeCCcccc
Confidence 456677779999999988877764311111 11156789999985 455566666666543 44 5566665541
Q ss_pred ---HHHHHHh-ccC----CcEEEECchhhHHHH-hCCCcccCCcceEeeccchhhhh
Q psy8712 328 ---KDQMSVL-SSG----VDIVVGTPGRMEDLI-SGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 328 ---~~q~~~L-~~~----~dIlV~TP~rL~~ll-~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
......+ ... .+++++|-+.+.... ....+.-.....+|+||||.+-+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 2233222 222 799999988776532 12233445667999999999654
No 249
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=84.68 E-value=1.9 Score=41.01 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
...+++||||||.|-.. -...+.+++..-|. +..++++|....
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~------~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPE------NTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTT------TEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCC------CEEEEEEECChH
Confidence 56889999999998754 34456777777665 677777776654
No 250
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=84.62 E-value=1.4 Score=49.74 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=41.1
Q ss_pred CeEEEecCCCCceeeeeccc-cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccC
Q psy8712 253 DYIAVCNAPKQNVKHSESAD-VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFI 311 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~-~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~ 311 (651)
.......-+.|||......+ ..+ .. ....++++++.+++++-|..+++.+..+....
T Consensus 24 ~~~l~v~RkNGKS~l~a~i~ly~l-~~-~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 24 EVYLEVPRKNGKSTLAAAIALYML-FL-DGEPGAEIYCAANTRDQAKIVFDEAKKMIEAS 81 (477)
T ss_pred EEEEEEcCccCccHHHHHHHHHHH-hc-CCccCceEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 45566778899999865433 222 11 13456899999999999999999999887653
No 251
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.53 E-value=2.9 Score=46.66 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=30.0
Q ss_pred CcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 361 HCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
+.++|+|||+|.+.+.. ....+..+++.+... +.|+++.|- .++..+..+..++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-----~k~iIitsd-~~p~~l~~l~~rL 248 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-----GKQIVICSD-REPQKLSEFQDRL 248 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-----CCeEEEECC-CCHHHHHHHHHHH
Confidence 57799999999886532 223444455444331 345555444 4443565554444
No 252
>KOG0989|consensus
Probab=84.50 E-value=0.75 Score=47.94 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=35.8
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHH
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAER 419 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~ 419 (651)
.+..+.+|+||||.|-.. -...+++.+...+. ...+++..--++. -+..+..+
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~------~trFiLIcnylsr-ii~pi~SR 179 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSR------TTRFILICNYLSR-IIRPLVSR 179 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhcccc------ceEEEEEcCChhh-CChHHHhh
Confidence 456799999999999763 33457777777665 5788887776653 33444443
No 253
>KOG0388|consensus
Probab=84.41 E-value=2.3 Score=48.73 Aligned_cols=138 Identities=11% Similarity=0.129 Sum_probs=83.4
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
.-|-|.....|-|||+-++..++.+-..... -+|. ||++|.-. ..++.+.++++++ .+++.-..|+......
T Consensus 586 GiNGILADeMGLGKTVQsisvlAhLaE~~nI-wGPF-LVVtpaSt----L~NWaqEisrFlP--~~k~lpywGs~~eRki 657 (1185)
T KOG0388|consen 586 GINGILADEMGLGKTVQSISVLAHLAETHNI-WGPF-LVVTPAST----LHNWAQEISRFLP--SFKVLPYWGSPSERKI 657 (1185)
T ss_pred cccceehhhhccchhHHHHHHHHHHHHhccC-CCce-EEeehHHH----HhHHHHHHHHhCc--cceeecCcCChhhhHH
Confidence 3456777788999999887766555443222 2444 67777544 4566677777765 6888888887665444
Q ss_pred HHHh---------ccCCcEEEECchhhHH---HHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 331 MSVL---------SSGVDIVVGTPGRMED---LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 331 ~~~L---------~~~~dIlV~TP~rL~~---ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.+.. ..+.||+|+|-+.+.. ++++ -+-.+.|+|||..+-.. ...-.+.++..- -
T Consensus 658 LrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKSS-sS~RWKtLLsF~--------c 723 (1185)
T KOG0388|consen 658 LRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKSS-SSSRWKTLLSFK--------C 723 (1185)
T ss_pred HHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhhh-hhhHHHHHhhhh--------c
Confidence 4331 2368999999765532 2221 12358999999987542 222234444321 1
Q ss_pred eeEEEEeeccCh
Q psy8712 399 LQMIVCSATLHD 410 (651)
Q Consensus 399 ~Q~l~~SATl~~ 410 (651)
+-.++++.|.-.
T Consensus 724 RNRLLLTGTPIQ 735 (1185)
T KOG0388|consen 724 RNRLLLTGTPIQ 735 (1185)
T ss_pred cceeeecCCccc
Confidence 245677888543
No 254
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=84.16 E-value=1 Score=47.49 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCcc
Q psy8712 17 VEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT 53 (651)
|.+.|. .++-|.+.+-. +..++.++++++||||||
T Consensus 111 l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT 146 (299)
T TIGR02782 111 YVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKT 146 (299)
T ss_pred HHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 334454 34455555544 456789999999999999
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.86 E-value=1.9 Score=42.97 Aligned_cols=21 Identities=0% Similarity=-0.184 Sum_probs=17.1
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
..+...+..+..|+|||..+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 346688999999999999644
No 256
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.77 E-value=5.2 Score=51.62 Aligned_cols=31 Identities=29% Similarity=0.209 Sum_probs=27.6
Q ss_pred CCcHHHHhhHHhHhcC--CceEeeecCCCCccc
Q psy8712 24 LPTDVQAEAIPLILGG--GDVLMAAETGSGKTG 54 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~ 54 (651)
.+++.|.+|+..++.+ +=+++.+..|+|||.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT 999 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTT 999 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHH
Confidence 5899999999999986 458899999999993
No 257
>PHA02533 17 large terminase protein; Provisional
Probab=83.48 E-value=4.9 Score=45.88 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=43.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++++++|+++-|..+++.++.+...++.. ++... .. .......+.++..|.+.|.. .+...-.+..+
T Consensus 105 ~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l-~~~~i-~~---~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~ 172 (534)
T PHA02533 105 KNVGILAHKASMAAEVLDRTKQAIELLPDF-LQPGI-VE---WNKGSIELENGSKIGAYASS-------PDAVRGNSFAM 172 (534)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHHhCHHH-hhcce-ee---cCccEEEeCCCCEEEEEeCC-------CCccCCCCCce
Confidence 378999999999999988888765543210 01000 00 00111123456666554421 12223345678
Q ss_pred Eeeccchhhh
Q psy8712 365 FVLDEADGLL 374 (651)
Q Consensus 365 lViDEaD~ll 374 (651)
+|+||+|.+-
T Consensus 173 liiDE~a~~~ 182 (534)
T PHA02533 173 IYIDECAFIP 182 (534)
T ss_pred EEEeccccCC
Confidence 9999999654
No 258
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=83.45 E-value=5.3 Score=52.60 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=26.1
Q ss_pred CCcHHHHhhHHhHhcC--CceEeeecCCCCcc
Q psy8712 24 LPTDVQAEAIPLILGG--GDVLMAAETGSGKT 53 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT 53 (651)
.+++-|.+|+-.++.. +=+++.++.|+|||
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKT 460 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGST 460 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHH
Confidence 4789999999999876 45788899999999
No 259
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=83.44 E-value=0.59 Score=51.04 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.8
Q ss_pred ceEeeecCCCCccceeehhhHH
Q psy8712 41 DVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 41 dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.+++.|+||||||.+|++|-+-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll 22 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL 22 (384)
T ss_pred CeeEecCCCCCCccEEEccchh
Confidence 4789999999999999999775
No 260
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.43 E-value=1.3 Score=47.22 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCcc
Q psy8712 17 VEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT 53 (651)
+.+.|. .++.|.+.+-. +..+++++++++||||||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT 158 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT 158 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 334444 45667766554 456789999999999999
No 261
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=0.5 Score=49.41 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=13.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.++|+.+|||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 489999999999994
No 262
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=83.10 E-value=1.4 Score=47.13 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=16.4
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..+++++++++||||||
T Consensus 157 v~~~~nili~G~tgSGKT 174 (332)
T PRK13900 157 VISKKNIIISGGTSTGKT 174 (332)
T ss_pred HHcCCcEEEECCCCCCHH
Confidence 457899999999999999
No 263
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.07 E-value=4.1 Score=47.05 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++|++.|.++++.+...+ +++..++|+.+..+....+. ...+|||+|. . -...++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g-------~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v-~arGID 322 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHG-------YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----V-AARGLH 322 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----h-hhcCCC
Confidence 45689999999999999999887653 78889999988766554442 3589999993 3 345567
Q ss_pred cCCcceEeecc
Q psy8712 359 LTHCRFFVLDE 369 (651)
Q Consensus 359 l~~l~~lViDE 369 (651)
+.+++++|.-+
T Consensus 323 ip~V~~VInyd 333 (572)
T PRK04537 323 IDGVKYVYNYD 333 (572)
T ss_pred ccCCCEEEEcC
Confidence 88999888654
No 264
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=82.96 E-value=1 Score=40.00 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=17.5
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+..++..+..|+|||+.+...+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA 23 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3567889999999999876544
No 265
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.92 E-value=0.91 Score=52.24 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=24.8
Q ss_pred HHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCccce
Q psy8712 17 VEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT~a 55 (651)
|+++|+ .+-|.+.+..++ ..+-+++++|||||||-.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 556665 344555555544 357799999999999954
No 266
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.92 E-value=3.2 Score=45.63 Aligned_cols=18 Identities=0% Similarity=-0.162 Sum_probs=14.9
Q ss_pred CeEEEecCCCCceeeeec
Q psy8712 253 DYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~ 270 (651)
.++..+.+|+|||..+..
T Consensus 138 ~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 478899999999997643
No 267
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=82.77 E-value=12 Score=43.99 Aligned_cols=79 Identities=14% Similarity=0.324 Sum_probs=58.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l 357 (651)
.++.++||.++|+..|..+.+.+...+ +++..+.|+.+..+....+ + ...+|+|+| +.+ ...+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~g-------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~rGf 506 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELG-------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGL 506 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhc-------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cCCe
Confidence 456789999999999999999888764 7777787876654443333 2 358999999 333 3556
Q ss_pred ccCCcceEeeccchhh
Q psy8712 358 SLTHCRFFVLDEADGL 373 (651)
Q Consensus 358 ~l~~l~~lViDEaD~l 373 (651)
++.+++++|+-|+|..
T Consensus 507 DiP~v~lVvi~Dadif 522 (655)
T TIGR00631 507 DLPEVSLVAILDADKE 522 (655)
T ss_pred eeCCCcEEEEeCcccc
Confidence 7899999998888864
No 268
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.76 E-value=3.7 Score=42.20 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=17.5
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
+...+.+..++.|+|||.++-.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHH
Confidence 3446789999999999997543
No 269
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=82.62 E-value=1.2 Score=46.16 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=25.0
Q ss_pred HHHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCcc
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKT 53 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT 53 (651)
.|+++|+ ++-|.+.+-.++ .++-++++++||||||
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKT 94 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKT 94 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHH
Confidence 4666765 455666665544 3467999999999999
No 270
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=82.54 E-value=0.74 Score=51.63 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.8
Q ss_pred ceEeeecCCCCccceeehhhH
Q psy8712 41 DVLMAAETGSGKTGAFCLPII 61 (651)
Q Consensus 41 dvl~~a~TGsGKT~af~lp~l 61 (651)
++++.||||||||..|++|.|
T Consensus 46 h~lvig~tgSGKt~~~viP~l 66 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNL 66 (469)
T ss_pred EEEEEeCCCCCccceeeHhHH
Confidence 599999999999999999976
No 271
>PRK13764 ATPase; Provisional
Probab=82.30 E-value=0.86 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=17.6
Q ss_pred cCCceEeeecCCCCccceeehhhHH
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.++.++++++||||||- |+-.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~ 279 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAE 279 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHH
Confidence 46779999999999993 3333443
No 272
>PRK09401 reverse gyrase; Reviewed
Probab=82.02 E-value=3.8 Score=51.23 Aligned_cols=71 Identities=24% Similarity=0.212 Sum_probs=60.2
Q ss_pred cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 20 MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 20 ~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
.|+ .||++|.++||.++.|+|++++|||||||| +|++|++..+.. .+.++++++|+++|+.|..+..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT-~f~l~~~~~l~~-----------~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKT-TFGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHH-HHHHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHH
Confidence 577 899999999999999999999999999999 477776654422 1457999999999999999887
Q ss_pred cccC
Q psy8712 100 MAIT 103 (651)
Q Consensus 100 ~~~~ 103 (651)
..+.
T Consensus 144 ~~l~ 147 (1176)
T PRK09401 144 EKFG 147 (1176)
T ss_pred HHHh
Confidence 7664
No 273
>PRK14974 cell division protein FtsY; Provisional
Probab=81.94 E-value=3.9 Score=43.84 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred CCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 360 THCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
.+.++|+||.|.++-. ......++.+.+.+.. ..-++.++||... +....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p------d~~iLVl~a~~g~-d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP------DLVIFVGDALAGN-DAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC------ceEEEeeccccch-hHHHHHHHHH
Confidence 3567999999988752 3455667777665543 3567888998865 5555566654
No 274
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.80 E-value=2.4 Score=45.70 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=19.6
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
...+.+.++.+..|+|||.+.-...
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999998765444
No 275
>PRK10536 hypothetical protein; Provisional
Probab=81.47 E-value=1.3 Score=45.49 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=34.0
Q ss_pred CCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHH
Q psy8712 21 DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
++.--+..|...+..+..+.-|++.+|+|||||+.-+.-.++.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44456888999999999988899999999999965554444433
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=81.45 E-value=3 Score=38.48 Aligned_cols=37 Identities=3% Similarity=0.070 Sum_probs=22.3
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre 295 (651)
+++.+..|+|||..+...+.... ..+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECCcc
Confidence 46788999999998755442221 13445666655433
No 277
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.37 E-value=5.2 Score=44.73 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=28.7
Q ss_pred CCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 360 THCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
.++++|||||+|.+.... ....+-.++..+... +.++++ +++.++..+..+-.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-----~~~iii-ts~~~p~~l~~l~~ 263 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-----GKQIVL-TSDRPPKELPGLEE 263 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-----CCcEEE-ECCCCHHHHHHHHH
Confidence 467799999999875421 223444455444321 245544 55555435544433
No 278
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=81.33 E-value=4.4 Score=51.14 Aligned_cols=36 Identities=42% Similarity=0.486 Sum_probs=28.9
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHH
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.|+-|.+||- ..|++++|.|.-|||||.+-+-=++.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~ 37 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIK 37 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHH
Confidence 5899999997 46889999999999999665444443
No 279
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=81.31 E-value=2.6 Score=50.15 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccceee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFC 57 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~ 57 (651)
..++|-|.+|+... .+.++|.|..|||||-+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~ 35 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLT 35 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHH
Confidence 35899999999753 5789999999999996543
No 280
>COG4889 Predicted helicase [General function prediction only]
Probab=81.14 E-value=2.2 Score=50.19 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=45.8
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC---CceEEEEeee
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE---RMGLAISLVS 517 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g---~~G~ai~lv~ 517 (651)
..+.++...-.+..|+|+|.++-||.||.-.+..+-+|-+||+-|-. +-|+.|+=+.
T Consensus 527 neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 527 NECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred chheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 44566665666777999999999999999999999999999999943 3566666554
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.10 E-value=10 Score=41.58 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=66.8
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeC-C-HH-HHHHHHHHHHHhhccCCCCCeeEEEEeCCcc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEP-S-RE-LAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~P-T-re-La~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~ 326 (651)
.|..+..++.+|+|||+.....+.... ..+.++.++.- + |. -+.|... ++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-----~~GkkVglI~aDt~RiaAvEQLk~----yae~l--------------- 295 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-----GKKKTVGFITTDHSRIGTVQQLQD----YVKTI--------------- 295 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-----HcCCcEEEEecCCcchHHHHHHHH----Hhhhc---------------
Confidence 356788999999999998665442221 12333443332 2 21 2222222 22111
Q ss_pred HHHHHHHhccCCcEE-EECchhhHHHHhCCCcccCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEE
Q psy8712 327 VKDQMSVLSSGVDIV-VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVC 404 (651)
Q Consensus 327 ~~~q~~~L~~~~dIl-V~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~ 404 (651)
++.++ +.+|..+.+.+..-. .-.+.++|+||-+=+.... .....+..+++.... ..-++.+
T Consensus 296 ----------gipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P------devlLVL 358 (436)
T PRK11889 296 ----------GFEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP------DYICLTL 358 (436)
T ss_pred ----------CCcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC------CeEEEEE
Confidence 22333 345666555443211 0124678888877654321 122334444433222 2346679
Q ss_pred eeccChHHHHHHHHHhcc
Q psy8712 405 SATLHDFDVKKMAERLMY 422 (651)
Q Consensus 405 SATl~~~~v~~l~~~~l~ 422 (651)
|||....++.+.++.|-.
T Consensus 359 sATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 359 SASMKSKDMIEIITNFKD 376 (436)
T ss_pred CCccChHHHHHHHHHhcC
Confidence 998876677788877743
No 282
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=80.61 E-value=0.96 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEeeecCCCCccceeehhhHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
..+++.||||||||..|++|-|-
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL 162 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLL 162 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHh
Confidence 38999999999999999999875
No 283
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=80.57 E-value=1.1 Score=48.08 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.1
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.++-+++++|||||||-
T Consensus 121 ~~g~ili~G~tGSGKTT 137 (343)
T TIGR01420 121 PRGLILVTGPTGSGKST 137 (343)
T ss_pred cCcEEEEECCCCCCHHH
Confidence 46889999999999994
No 284
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=80.44 E-value=3.1 Score=48.96 Aligned_cols=32 Identities=34% Similarity=0.344 Sum_probs=25.8
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccceeeh
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCL 58 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~l 58 (651)
++|-|.+|+.. ..+.++|.|..|||||.+-+-
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH
Confidence 68899998865 467899999999999965433
No 285
>PRK08116 hypothetical protein; Validated
Probab=80.30 E-value=6.2 Score=40.89 Aligned_cols=21 Identities=0% Similarity=-0.143 Sum_probs=16.8
Q ss_pred CCeEEEecCCCCceeeeeccc
Q psy8712 252 KDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..++..+..|+|||..+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia 135 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIA 135 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999866433
No 286
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=80.07 E-value=1.1 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred CceEeeecCCCCccceeehhhHHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQI 63 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~~ 63 (651)
..+++.||||||||..|++|-|..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~ 182 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLF 182 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHh
Confidence 479999999999999999998863
No 287
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.00 E-value=2.7 Score=47.03 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=26.7
Q ss_pred cCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 359 LTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
+.++++|||||+|.+... .....+..+++.+... +.|+|+.|-..|
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-----~k~iIltsd~~P 250 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-----DKQLFFSSDKSP 250 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-----CCcEEEECCCCH
Confidence 356789999999987532 2234455555554331 346665555444
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.95 E-value=3 Score=44.04 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=25.1
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
...++|||||+|.+........+..+++..+. +.++++.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~------~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSK------NCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCC------CceEEEEc
Confidence 34679999999988332234456666666554 45666544
No 289
>PRK10536 hypothetical protein; Provisional
Probab=79.83 E-value=3.7 Score=42.21 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=25.1
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+||||||+.+- ..+++.++.++.. +.++++..
T Consensus 178 ~~vIvDEaqn~~----~~~~k~~ltR~g~------~sk~v~~G 210 (262)
T PRK10536 178 AVVILDEAQNVT----AAQMKMFLTRLGE------NVTVIVNG 210 (262)
T ss_pred CEEEEechhcCC----HHHHHHHHhhcCC------CCEEEEeC
Confidence 699999999764 3578888888876 56666653
No 290
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=79.83 E-value=1.9 Score=48.82 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=45.1
Q ss_pred CCCCCCCCeEEEecCCCCceeeeeccccccCC-ccccCCCCeEEEEeCCHHHHHHHHHHHHHhhc
Q psy8712 246 FKHEPPKDYIAVCNAPKQNVKHSESADVSAGP-VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKK 309 (651)
Q Consensus 246 ~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~-~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~ 309 (651)
+..+...-.++++.+|||||+++....|.+.- .........+||+.|.+-++.=+.+++=.|+.
T Consensus 221 IR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 221 IRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred HhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 34445555899999999999998776533322 22222333499999999999988888877764
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=79.67 E-value=10 Score=50.14 Aligned_cols=31 Identities=35% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCcHHHHhhHHhHhcCC--ceEeeecCCCCccc
Q psy8712 24 LPTDVQAEAIPLILGGG--DVLMAAETGSGKTG 54 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~--dvl~~a~TGsGKT~ 54 (651)
.+|+.|.+||..|+.+. =+++.+..|+|||.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt 1051 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTT 1051 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHH
Confidence 57999999999999764 46778999999993
No 292
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=79.39 E-value=1.1 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.2
Q ss_pred CceEeeecCCCCccceeehhhHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
..+++.||||||||..|++|-|.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL 198 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLL 198 (636)
T ss_pred ceEEEEecCCCCCceEEEccchh
Confidence 46999999999999999999885
No 293
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=79.13 E-value=1.5 Score=42.67 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=23.2
Q ss_pred CcHHHHhhHHhH-hcCCceEeeecCCCCccc
Q psy8712 25 PTDVQAEAIPLI-LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 25 pt~iQ~~aip~i-l~g~dvl~~a~TGsGKT~ 54 (651)
.++-|.+.+... ..|+.+++++|||||||-
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTT 40 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTT 40 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 355666666665 467899999999999994
No 294
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=79.13 E-value=7.6 Score=42.36 Aligned_cols=135 Identities=12% Similarity=0.108 Sum_probs=68.8
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD 329 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~ 329 (651)
+++.+..+++||-|||+.-...++.... ......-+||=.-|--.+- .++++.+++-++ +.+.++........
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~--~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~---vp~~vv~~~~el~~ 274 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM--LKKKKKVAIITTDTYRIGA--VEQLKTYADIMG---VPLEVVYSPKELAE 274 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh--hccCcceEEEEeccchhhH--HHHHHHHHHHhC---CceEEecCHHHHHH
Confidence 3778899999999999975443322210 1122334444444432221 234444444333 43333333333333
Q ss_pred HHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhh-hccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 330 QMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL-KQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 330 q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll-~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.... +.+.++|.||=+-+=. |.....++..++..-.. ---.+.+|||.
T Consensus 275 ai~~-------------------------l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~------i~~~Lvlsat~ 323 (407)
T COG1419 275 AIEA-------------------------LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS------IEVYLVLSATT 323 (407)
T ss_pred HHHH-------------------------hhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc------ceEEEEEecCc
Confidence 3333 3344555555443211 11122334444444322 24678899999
Q ss_pred ChHHHHHHHHHhcc
Q psy8712 409 HDFDVKKMAERLMY 422 (651)
Q Consensus 409 ~~~~v~~l~~~~l~ 422 (651)
...++....+.|-.
T Consensus 324 K~~dlkei~~~f~~ 337 (407)
T COG1419 324 KYEDLKEIIKQFSL 337 (407)
T ss_pred chHHHHHHHHHhcc
Confidence 88788888888754
No 295
>PTZ00110 helicase; Provisional
Probab=78.79 E-value=6.6 Score=45.07 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=54.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---cc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---SS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.|+|+.-|..+.+.++..+ +.+..+.|+.+..+....+ ++ ...|||+|. +...-++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g-------~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd------v~~rGID 442 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDG-------WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD------VASRGLD 442 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcC-------CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc------hhhcCCC
Confidence 56799999999999999988886432 7778889988766554443 33 578999993 3345567
Q ss_pred cCCcceEeec
Q psy8712 359 LTHCRFFVLD 368 (651)
Q Consensus 359 l~~l~~lViD 368 (651)
+.++++||.-
T Consensus 443 i~~v~~VI~~ 452 (545)
T PTZ00110 443 VKDVKYVINF 452 (545)
T ss_pred cccCCEEEEe
Confidence 8889988853
No 296
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=78.63 E-value=1.8 Score=48.77 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred HHHHcCCCCCcHHHHhhHHhHhc--CCceEeeecCCCCccc
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLILG--GGDVLMAAETGSGKTG 54 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il~--g~dvl~~a~TGsGKT~ 54 (651)
.|+++|+ ++-|.+.+-.++. .+=+++++|||||||-
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTT 257 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTT 257 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence 3556665 4556666655553 3458999999999994
No 297
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=78.49 E-value=5.7 Score=43.88 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=54.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|+.-|..+++.+...+ +++..+.|+.+..++...+. ...+|||+|. +-...+++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g-------~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd------v~~rGiDi 321 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADG-------HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD------VAARGLHI 321 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCC-------CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec------hhhcCCCc
Confidence 4689999999999998888886543 78889999887666554442 3689999993 33455677
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
.+++++|.-
T Consensus 322 p~v~~VI~~ 330 (423)
T PRK04837 322 PAVTHVFNY 330 (423)
T ss_pred cccCEEEEe
Confidence 888887743
No 298
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=78.36 E-value=5.6 Score=46.92 Aligned_cols=39 Identities=13% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+.+++||||+|.|....+. .+.++++.-+. +..+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~------~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPP------HVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCC------CeEEEEEE
Confidence 45789999999998764433 34445555444 34555544
No 299
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=78.31 E-value=6 Score=47.54 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=27.4
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+.+++||||+|.|-...+ ..+.++++..+. .+.+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~------~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPE------HLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCC------CeEEEEEe
Confidence 5678999999999976443 356667777665 45666654
No 300
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.30 E-value=1.7 Score=48.32 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=22.4
Q ss_pred cHHHHhhHHhHhcC--CceEeeecCCCCccce
Q psy8712 26 TDVQAEAIPLILGG--GDVLMAAETGSGKTGA 55 (651)
Q Consensus 26 t~iQ~~aip~il~g--~dvl~~a~TGsGKT~a 55 (651)
++.|.+.+-.++.. +=+|+.+|||||||..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 56666666666644 5689999999999943
No 301
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=78.19 E-value=11 Score=44.54 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCCCcHHHHhhHHhHhcCC--ceEeeecCCCCccceeehhhHH
Q psy8712 13 IGKAVEEMDWLLPTDVQAEAIPLILGGG--DVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 13 l~~~l~~~~~~~pt~iQ~~aip~il~g~--dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.-+.|.++.-+.+..-|.+.+..++.++ -+++.|.-|=|||.+-.+.+..
T Consensus 203 ~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~ 254 (758)
T COG1444 203 FPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA 254 (758)
T ss_pred CCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH
Confidence 3445666666666666666777776553 5888899999999888888744
No 302
>PRK06921 hypothetical protein; Provisional
Probab=78.16 E-value=2.2 Score=44.26 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=17.9
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+++..+++|+|||..+...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 5679999999999999875433
No 303
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.13 E-value=3.2 Score=47.84 Aligned_cols=50 Identities=8% Similarity=0.061 Sum_probs=28.8
Q ss_pred cCCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHH
Q psy8712 359 LTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVK 414 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~ 414 (651)
+.++++|||||+|.+.... ....+-.+++.+... +.++|+.|-..+ .++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-----gk~IIITSd~~P-~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-----NKQIVLSSDRPP-KQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-----CCCEEEecCCCh-Hhhh
Confidence 4567899999999886432 233444555554331 356776554443 3444
No 304
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=78.13 E-value=1.5 Score=47.14 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=16.9
Q ss_pred hHhcCCceEeeecCCCCcc
Q psy8712 35 LILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 35 ~il~g~dvl~~a~TGsGKT 53 (651)
++..+++++++++||||||
T Consensus 158 ~v~~~~nilI~G~tGSGKT 176 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKT 176 (344)
T ss_pred HHHcCCeEEEECCCCccHH
Confidence 3457899999999999999
No 305
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.93 E-value=9.1 Score=41.59 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=21.8
Q ss_pred CCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 245 PFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 245 ~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+..+.|.|.++-+.+|+|||.+.-..+
T Consensus 36 ~~~~~~p~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 36 ALRGERPSNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred HhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence 3556677789999999999999755443
No 306
>KOG4367|consensus
Probab=77.91 E-value=2.9 Score=44.97 Aligned_cols=111 Identities=26% Similarity=0.410 Sum_probs=71.8
Q ss_pred cccccccccccCCceeEEEEEecc-CCc--eeecccccccccc--CCCCCCCCCcCCCCccCC---CcccCcc-CcccCC
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTD-EGL--CRVGWSTSQAVRD--LGTDRFGFGFGGTGKKSN---NKQFDNY-GEAFGM 187 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~-~~~--~~~~~~~~~~~~~--~g~~~~~~~~gg~~~ks~---~~~~~~~-g~~~~~ 187 (651)
+.-.-+..|.+ ||-.|||+||.. +|. .-+|-.-.+-..+ +|.|..+|.-==.|..|+ |...-+- ---...
T Consensus 562 yrtilgsiafs-kgvhywevtidrhdgnsdivigvaqpavnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtr 640 (699)
T KOG4367|consen 562 YRTILGSIAFS-KGVHYWEVTIDRHDGNSDIVIGVAQPAVNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTR 640 (699)
T ss_pred hheeeeecccc-cceeEEEEEEeccCCCCCceEEecchhhhhceeecccccceeEEEcCcceeEEecccccccccccccc
Confidence 33333444444 899999999864 333 3355555555555 899999996555566653 2222111 112578
Q ss_pred CcccccccccCCceeeeeccCcc-cccccccchhhhhccCcchhhc
Q psy8712 188 HDVIGCLLDLDNMTVAFTKNGQH-LGLAFNISQQLKNSAFYPAVVL 232 (651)
Q Consensus 188 ~d~ig~~~~~~~~~~~~~~ng~~-~g~af~~~~~~~~~~~~p~~~~ 232 (651)
|-|||..||.|+|++.|+.|-+. =.+||.- + .--+|||+.+
T Consensus 641 gtvigvrldcdrgtmeytvndrqddsmaftn---m-rglyypafsv 682 (699)
T KOG4367|consen 641 GTVIGVRLDCDRGTMEYTVNDRQDDSMAFTN---M-RGLYYPAFSV 682 (699)
T ss_pred ccEEEEEEeccCCceEEEeccccCCceeeec---c-cceeeeeeEe
Confidence 89999999999999999999875 3466653 2 3346666653
No 307
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=77.71 E-value=0.98 Score=46.64 Aligned_cols=18 Identities=50% Similarity=0.918 Sum_probs=16.2
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..++.++++++||||||
T Consensus 124 v~~~~~ili~G~tGSGKT 141 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKT 141 (270)
T ss_dssp HHTTEEEEEEESTTSSHH
T ss_pred cccceEEEEECCCccccc
Confidence 356899999999999999
No 308
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=77.54 E-value=7.8 Score=43.36 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---cc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---SS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++|++-+..+++.+...+ +++..+.|+.+..+....+ ++ ..+|||+|- .+. .-++
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiD 310 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDG-------IRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLD 310 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCC
Confidence 44689999999999999988886543 7888899998875555444 33 579999993 333 4567
Q ss_pred cCCcceEee
Q psy8712 359 LTHCRFFVL 367 (651)
Q Consensus 359 l~~l~~lVi 367 (651)
+.+++++|.
T Consensus 311 ip~v~~VI~ 319 (456)
T PRK10590 311 IEELPHVVN 319 (456)
T ss_pred cccCCEEEE
Confidence 788888774
No 309
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=77.33 E-value=8.4 Score=45.97 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=48.5
Q ss_pred cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 20 MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 20 ~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
+|. .|.++|--+.-.+. ..-++...||.|||+++.+|+.-..+. +..+-++++.-.|+..|.++.
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~------------G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT------------GKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc------------CCceEEEeCCHHHHHHHHHHH
Confidence 666 49999987754443 345889999999999999999743333 345667777777877777655
Q ss_pred ccc
Q psy8712 100 MAI 102 (651)
Q Consensus 100 ~~~ 102 (651)
--+
T Consensus 138 ~pv 140 (870)
T CHL00122 138 GQI 140 (870)
T ss_pred HHH
Confidence 333
No 310
>PRK06526 transposase; Provisional
Probab=77.23 E-value=1.4 Score=45.24 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=25.1
Q ss_pred HHHHHcCCCCCcHHHHhhH------HhHhcCCceEeeecCCCCcc
Q psy8712 15 KAVEEMDWLLPTDVQAEAI------PLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 15 ~~l~~~~~~~pt~iQ~~ai------p~il~g~dvl~~a~TGsGKT 53 (651)
+.|+++.|.....+-...+ ..+-.+.++++.+|+|+|||
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKT 112 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKT 112 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCchhhcCceEEEEeCCCCchH
Confidence 4555555554333333333 33446689999999999999
No 311
>KOG0344|consensus
Probab=77.20 E-value=3.7 Score=46.23 Aligned_cols=294 Identities=20% Similarity=0.213 Sum_probs=176.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcccccc
Q psy8712 7 MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVIS 86 (651)
Q Consensus 7 l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (651)
..+++.+++.+.+.+|..|||+|.+|||.++.++|++++||||||||+||++|+|+.+..... .+...+-+++++.
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----~~~~~gl~a~Il~ 216 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----EKHKVGLRALILS 216 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc----ccCccceEEEEec
Confidence 568999999999999999999999999999999999999999999999999999998766432 3333455889999
Q ss_pred CceeeeccccccccccCCC---CcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCCC
Q psy8712 87 PTWILSVWDRDTAMAITPE---GLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRFG 163 (651)
Q Consensus 87 p~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 163 (651)
|+++|..|++.....+..+ ++.-+-+. .-...+-..+.. ++-.+++- ++|..
T Consensus 217 ptreLa~Qi~re~~k~~~~~~t~~~a~~~~--~~~~~~qk~a~~------------~~~k~dil---------i~TP~-- 271 (593)
T KOG0344|consen 217 PTRELAAQIYREMRKYSIDEGTSLRAAQFS--KPAYPSQKPAFL------------SDEKYDIL---------ISTPM-- 271 (593)
T ss_pred chHHHHHHHHHHHHhcCCCCCCchhhhhcc--cccchhhccchh------------HHHHHHHH---------hcCHH--
Confidence 9999999999888777633 00000000 000000000000 00000000 11111
Q ss_pred CCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcc----ccccccc-chhhhhccCcchhhccccccc
Q psy8712 164 FGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQH----LGLAFNI-SQQLKNSAFYPAVVLKNAEMS 238 (651)
Q Consensus 164 ~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~----~g~af~~-~~~~~~~~~~p~~~~k~~~~~ 238 (651)
+++|-+ .+..-.|.+++--.. =...|+. .-..|-..+|-+|..++.-.+
T Consensus 272 -------------------------ri~~~~-~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a 325 (593)
T KOG0344|consen 272 -------------------------RIVGLL-GLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVA 325 (593)
T ss_pred -------------------------HHHHHh-cCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhh
Confidence 111111 111111222222111 1344444 333444455555544442221
Q ss_pred c-ccCCCC--------C----------CCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHH
Q psy8712 239 F-NFGATP--------F----------KHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQ 299 (651)
Q Consensus 239 ~-~f~~~~--------~----------~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Q 299 (651)
+ .+.-.. . .++...+.+-+.....|++..-.+|+-.+-. ..-.|-+||.+-+.|-|.|
T Consensus 326 ~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~---~g~~PP~lIfVQs~eRak~ 402 (593)
T KOG0344|consen 326 LFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVA---SGFKPPVLIFVQSKERAKQ 402 (593)
T ss_pred hhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHh---ccCCCCeEEEEecHHHHHH
Confidence 1 110000 1 1122233444555667777776666622111 1246789999999999999
Q ss_pred HHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---cc-CCcEEEECchhhHHHHhCCCcccCCcceEeeccc
Q psy8712 300 TFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---SS-GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEA 370 (651)
Q Consensus 300 i~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~~-~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEa 370 (651)
++..+..+. ++++.+++|..+..+.-+.+ +. ...++|+| +++.+| +++.++.+||.++.
T Consensus 403 L~~~L~~~~------~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 403 LFEELEIYD------NINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDF 465 (593)
T ss_pred HHHHhhhcc------CcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCC
Confidence 999887332 49999999997765544433 33 57999999 677777 89999999999764
No 312
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.05 E-value=7.9 Score=43.52 Aligned_cols=69 Identities=28% Similarity=0.222 Sum_probs=59.7
Q ss_pred HHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccc
Q psy8712 18 EEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRD 97 (651)
Q Consensus 18 ~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 97 (651)
+.+||..|+|+|.+|||.++.|+|++++||||||||+||++|++.. ...+++++|+++|+.++..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------------~~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------------DGITLVISPLISLMEDQVL 69 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------------CCcEEEEecHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999998851 2358999999999877665
Q ss_pred cccc
Q psy8712 98 TAMA 101 (651)
Q Consensus 98 ~~~~ 101 (651)
...+
T Consensus 70 ~l~~ 73 (470)
T TIGR00614 70 QLKA 73 (470)
T ss_pred HHHH
Confidence 5443
No 313
>PF05729 NACHT: NACHT domain
Probab=76.94 E-value=8.2 Score=35.75 Aligned_cols=19 Identities=0% Similarity=-0.207 Sum_probs=15.0
Q ss_pred eEEEecCCCCceeeeeccc
Q psy8712 254 YIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~ 272 (651)
.++.+..|+|||+.....+
T Consensus 3 l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 4678999999999865544
No 314
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.72 E-value=16 Score=35.91 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=38.7
Q ss_pred cCCcceEeeccchhhhhccch--HHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 359 LTHCRFFVLDEADGLLKQGYG--NLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~--~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
-...++||+||+=..++.++. +++..+++.-|. ..-+|+..-..|+ ++.+++...
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~------~~evVlTGR~~p~-~Lie~ADlV 169 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPG------MQHVVITGRGAPR-ELIEAADLV 169 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC------CCEEEEECCCCCH-HHHHhCchh
Confidence 356789999999999988864 457777776665 4566666666664 776666543
No 315
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=76.40 E-value=1.6 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.4
Q ss_pred CceEeeecCCCCccceeehhhHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
..|++.||||||||..|++|-|.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL 167 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLL 167 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHH
Confidence 58999999999999999999876
No 316
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=76.30 E-value=1.9 Score=45.89 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=30.8
Q ss_pred HHcCCCCCcHHHHhhHHhHhcCC-ceEeeecCCCCcc
Q psy8712 18 EEMDWLLPTDVQAEAIPLILGGG-DVLMAAETGSGKT 53 (651)
Q Consensus 18 ~~~~~~~pt~iQ~~aip~il~g~-dvl~~a~TGsGKT 53 (651)
+=..|...++-|++.+-.+..++ ++|+++-||||||
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKT 187 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKT 187 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHH
Confidence 33467778999999998888776 9999999999999
No 317
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=76.00 E-value=1.5 Score=42.58 Aligned_cols=23 Identities=4% Similarity=-0.052 Sum_probs=17.9
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
...|++..+++|+|||..+...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHH
Confidence 45789999999999999876544
No 318
>KOG2243|consensus
Probab=75.89 E-value=2 Score=51.76 Aligned_cols=126 Identities=31% Similarity=0.596 Sum_probs=78.7
Q ss_pred ceeEEEEEec--------cCCceeecccccccccc------------CCCCCCCCCcCCCCccCCC--cccCccC-cccC
Q psy8712 130 GKYYYEATVT--------DEGLCRVGWSTSQAVRD------------LGTDRFGFGFGGTGKKSNN--KQFDNYG-EAFG 186 (651)
Q Consensus 130 ~~~~~e~~~~--------~~~~~~~~~~~~~~~~~------------~g~~~~~~~~gg~~~ks~~--~~~~~~g-~~~~ 186 (651)
-|+|||..+. +..-.||||....+-.. +|.|-+||||-|.---|-. +...+-- --..
T Consensus 677 kkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggngvgddl~sygfdglhlwsg~i~r~vas~nqhllr 756 (5019)
T KOG2243|consen 677 KKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFSYGFDGLHLWSGCIARAVASPNQHLLR 756 (5019)
T ss_pred HHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCCCccchhhhcCCCcchhhcccchhhhcChhhhhhc
Confidence 4789997653 23457999988765433 5566666666663211100 0000000 1145
Q ss_pred CCcccccccccCCceeeeeccCccccc---ccccchhhhhccCcchhhccc-cccccccCCCC--CCCCCCCCeEEEecC
Q psy8712 187 MHDVIGCLLDLDNMTVAFTKNGQHLGL---AFNISQQLKNSAFYPAVVLKN-AEMSFNFGATP--FKHEPPKDYIAVCNA 260 (651)
Q Consensus 187 ~~d~ig~~~~~~~~~~~~~~ng~~~g~---af~~~~~~~~~~~~p~~~~k~-~~~~~~f~~~~--~~~~~~~~~i~~~~~ 260 (651)
..|||.|-||+..-.|+|.-||+..-- .|+++ --|||.+.-.. ..+.|..|..- |++-||.++..|-.+
T Consensus 757 sddvisccldl~~psisfringqpvqgmfenfn~d-----glffpv~sfsagikvrfllggrhgefkflpp~gyapcyea 831 (5019)
T KOG2243|consen 757 SDDVISCCLDLGAPSISFRINGQPVQGMFENFNID-----GLFFPVMSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEA 831 (5019)
T ss_pred ccchhhhhhhcCCCceEEEECCccchhHHhcCCCc-----ceeeeeEeeccCeEEEEEecccccceeecCCCCCccHHHH
Confidence 679999999999999999999998532 34443 24677665544 56667776643 777788888776543
No 319
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.88 E-value=11 Score=39.12 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 360 THCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
.+.++++||-+=+... ......+..++..... ..-++.+|||....+..+.++.|-
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~------~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEP------DYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC------CeEEEEEcCccCHHHHHHHHHHhC
Confidence 3567888888765432 1122233344333222 234677999987667878888774
No 320
>PF13173 AAA_14: AAA domain
Probab=75.87 E-value=14 Score=33.31 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=26.8
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.-.+|+|||+|.+-+ +...++.+...-+ +.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~~-------~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNGP-------NIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhcc-------CceEEEEccch
Confidence 567899999999854 4566777776542 36777665544
No 321
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=75.85 E-value=9.2 Score=42.35 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++|++-|..+++.++.. ++++..+.|+.+..+....+. ...+|||+|- +....++
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd------~~~~GiD 310 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA-------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD------VAARGID 310 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC-------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCcc
Confidence 4568999999999999999988763 378889999888766654443 3589999993 3344567
Q ss_pred cCCcceEee
Q psy8712 359 LTHCRFFVL 367 (651)
Q Consensus 359 l~~l~~lVi 367 (651)
+.++.++|.
T Consensus 311 ip~v~~VI~ 319 (434)
T PRK11192 311 IDDVSHVIN 319 (434)
T ss_pred CCCCCEEEE
Confidence 888888874
No 322
>KOG0333|consensus
Probab=75.83 E-value=7.8 Score=43.29 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---cc-CCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---SS-GVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~~-~~dIlV~TP~rL~~ll~~~~l 357 (651)
+..|.++|.+.++.-|.-+++.+.+.+ +++..+.||.+.++....| +. ..+|+|+|- +.-..+
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g-------~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGI 581 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAG-------YKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGI 581 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhcc-------ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCC
Confidence 347889999999999998888888776 8999999999877766554 34 679999994 444567
Q ss_pred ccCCcceEe
Q psy8712 358 SLTHCRFFV 366 (651)
Q Consensus 358 ~l~~l~~lV 366 (651)
+..+|.+||
T Consensus 582 DIpnVSlVi 590 (673)
T KOG0333|consen 582 DIPNVSLVI 590 (673)
T ss_pred CCCccceee
Confidence 788888887
No 323
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.34 E-value=23 Score=39.57 Aligned_cols=127 Identities=13% Similarity=0.215 Sum_probs=66.2
Q ss_pred EEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH--HH----HH-hccCCcEEEECchhhHHHH----hCCC
Q psy8712 288 IIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD--QM----SV-LSSGVDIVVGTPGRMEDLI----SGGH 356 (651)
Q Consensus 288 LIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~--q~----~~-L~~~~dIlV~TP~rL~~ll----~~~~ 356 (651)
.|.-|..++|......+..-....+....+...++|+..... -. .. ...+..++..+.+.+...+ ..+.
T Consensus 113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~ 192 (445)
T PRK12422 113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGE 192 (445)
T ss_pred eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcch
Confidence 344677777755544443211101111245678888755311 11 11 2346888988887765433 2222
Q ss_pred c-----ccCCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 357 L-----SLTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 357 l-----~l~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
. .+.+.++|+|||+|.+.... -...+..+++.+... ..|+++.|-+.| ..+..+..++
T Consensus 193 ~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-----~k~IIlts~~~p-~~l~~l~~rL 256 (445)
T PRK12422 193 MQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-----GKLIVISSTCAP-QDLKAMEERL 256 (445)
T ss_pred HHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-----CCcEEEecCCCH-HHHhhhHHHH
Confidence 1 15678999999999886432 233444555444321 346666554444 3555444444
No 324
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=75.24 E-value=17 Score=42.46 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccc
Q psy8712 12 EIGKAVEEMDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVI 85 (651)
Q Consensus 12 ~l~~~l~~~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (651)
.+.+.++.++| .||++|.+||+.|+.+ .+++++|+||||||.+|++|+++.+.. +.+++++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~------------g~qvlil 290 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA------------GYQVALM 290 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc------------CCcEEEE
Confidence 35567788999 6999999999999977 258999999999999999999987654 4578999
Q ss_pred cCceeeeccccccccccC
Q psy8712 86 SPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 86 ~p~~~l~~~~~~~~~~~~ 103 (651)
+|+.+|+.|..+......
T Consensus 291 aPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999998877665543
No 325
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=74.90 E-value=1.4 Score=42.23 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=27.6
Q ss_pred HHhccCCcEEEECchhhHHHHhCCCcc--cCCcceEeeccchhhhh
Q psy8712 332 SVLSSGVDIVVGTPGRMEDLISGGHLS--LTHCRFFVLDEADGLLK 375 (651)
Q Consensus 332 ~~L~~~~dIlV~TP~rL~~ll~~~~l~--l~~l~~lViDEaD~ll~ 375 (651)
+.+...+||||++-.-|++-.....+. ..+-.+|||||||.|.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 334456899999987776533222221 12346999999998876
No 326
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=74.71 E-value=7.4 Score=42.74 Aligned_cols=23 Identities=0% Similarity=-0.080 Sum_probs=18.9
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+..++..++.|.|||..+...+
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA 57 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFA 57 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46679999999999999876544
No 327
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.43 E-value=2.5 Score=37.86 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=14.3
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
++.+++.+|+|+|||
T Consensus 19 ~~~v~i~G~~G~GKT 33 (151)
T cd00009 19 PKNLLLYGPPGTGKT 33 (151)
T ss_pred CCeEEEECCCCCCHH
Confidence 788999999999999
No 328
>KOG4284|consensus
Probab=74.39 E-value=2.4 Score=48.28 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=33.8
Q ss_pred cccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 213 LAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 213 ~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.||..|+++|.-+|. ++.. ++|.|+++.+|+|||.+|..++
T Consensus 43 n~f~~ptkiQaaAIP-~~~~------------------kmDliVQaKSGTGKTlVfsv~a 83 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIP-AIFS------------------KMDLIVQAKSGTGKTLVFSVLA 83 (980)
T ss_pred hcccCCCchhhhhhh-hhhc------------------ccceEEEecCCCCceEEEEeee
Confidence 489999999998883 3332 4799999999999999997765
No 329
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=74.33 E-value=2.5 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.9
Q ss_pred hHHhHhcCCceEeeecCCCCccc
Q psy8712 32 AIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 32 aip~il~g~dvl~~a~TGsGKT~ 54 (651)
++-.+..|+.|++.+|+|+|||.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~ 36 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTT 36 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHH
Confidence 34455678999999999999993
No 330
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.95 E-value=7.1 Score=45.41 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=17.7
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+.-++..+..|+|||.++...+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999886554
No 331
>KOG0330|consensus
Probab=73.79 E-value=1.7 Score=46.51 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=33.2
Q ss_pred ccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 214 AFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 214 af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
++..|+.+|.+++.++.. .+|.|+.++||+|||.+|.+.+
T Consensus 80 ~~~~PT~IQ~~aiP~~L~-------------------g~dvIglAeTGSGKT~afaLPI 119 (476)
T KOG0330|consen 80 GWKKPTKIQSEAIPVALG-------------------GRDVIGLAETGSGKTGAFALPI 119 (476)
T ss_pred CcCCCchhhhhhcchhhC-------------------CCcEEEEeccCCCchhhhHHHH
Confidence 389999999999954443 4599999999999999988754
No 332
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.75 E-value=7.5 Score=46.72 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=16.5
Q ss_pred CeEEEecCCCCceeeeeccc
Q psy8712 253 DYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~ 272 (651)
-++..+..|+|||.++...+
T Consensus 40 AyLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999876655
No 333
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.60 E-value=5.8 Score=45.07 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=25.8
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+.+++||||||.|....| ..+.+.+...|. ...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~------~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPS------HVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCC------CeEEEEEE
Confidence 4568999999999876444 335556666554 45666654
No 334
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.60 E-value=3.6 Score=42.95 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=29.5
Q ss_pred ccCCCCHHHHHHHHHc--CCCCCcHHHHhhHHhH---h-----------cCCceEeeecCCCCccce
Q psy8712 5 EEMGVLPEIGKAVEEM--DWLLPTDVQAEAIPLI---L-----------GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 5 ~~l~l~~~l~~~l~~~--~~~~pt~iQ~~aip~i---l-----------~g~dvl~~a~TGsGKT~a 55 (651)
.+.|+++++.+.|.+. +...+..++......+ + .++-+++++|||+|||..
T Consensus 144 ~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 144 LRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTT 210 (282)
T ss_pred HHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHH
Confidence 4567777777776541 2222333333222222 1 345788999999999943
No 335
>KOG0391|consensus
Probab=73.57 E-value=26 Score=42.95 Aligned_cols=114 Identities=17% Similarity=0.284 Sum_probs=68.6
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCC--eEEEccCCCCccCceEEEEEEeCcchHHHHHHHh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFP--TWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLR 458 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p--~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 458 (651)
.+.-+++.|... ..++++||- |+ .+.++.+.|++.. .++++++...+ .....+++++.
T Consensus 1264 tLAiLLqQLk~e-----ghRvLIfTQ-Mt--kmLDVLeqFLnyHgylY~RLDg~t~v------------EqRQaLmerFN 1323 (1958)
T KOG0391|consen 1264 TLAILLQQLKSE-----GHRVLIFTQ-MT--KMLDVLEQFLNYHGYLYVRLDGNTSV------------EQRQALMERFN 1323 (1958)
T ss_pred HHHHHHHHHHhc-----CceEEehhH-HH--HHHHHHHHHHhhcceEEEEecCCccH------------HHHHHHHHHhc
Confidence 344445555442 567888864 33 6777888887643 23333322111 11233444442
Q ss_pred h--ccccceeeccccccCCCCCCCCCEEEEeCCCCC------hhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 459 S--HIQTDGVHARDNARPGIDISGLPFIINMTLPDD------KANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 459 ~--~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s------~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
. .+.+. |.+|-.-..||++-+.+.||.||---+ ..+..||||+| +.=+.|-|+++.
T Consensus 1324 aD~RIfcf-ILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1324 ADRRIFCF-ILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISER 1387 (1958)
T ss_pred CCCceEEE-EEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccc
Confidence 2 22332 334555566999999999999997544 46789999998 556788888874
No 336
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.47 E-value=2 Score=41.68 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=16.6
Q ss_pred HHHHHcCCCCCcHHHHhhHHhH------hcCCceEeeecCCCCccc
Q psy8712 15 KAVEEMDWLLPTDVQAEAIPLI------LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 15 ~~l~~~~~~~pt~iQ~~aip~i------l~g~dvl~~a~TGsGKT~ 54 (651)
..++...|.....++...+..+ -.+.++++.+++|+|||.
T Consensus 17 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKTh 62 (178)
T PF01695_consen 17 ATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTH 62 (178)
T ss_dssp -----------------HHHHHHHH-S-SC--EEEEEESTTSSHHH
T ss_pred cccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHH
Confidence 3455566666656665555443 357899999999999994
No 337
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.31 E-value=7 Score=38.51 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 360 THCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
++.++++||-+-+... .....++..+++.+.. ..-.+.+|||.....+.....
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~------~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNP------DEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS------SEEEEEEEGGGGGHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC------ccceEEEecccChHHHHHHHH
Confidence 4456777776654321 2234456666666543 356788999998755554333
No 338
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=72.86 E-value=11 Score=42.14 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=55.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.|+|++-+..+++.+...+ +++..++|+.+..++...+. ...+|+|+|- +-...+++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~-------~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd------v~~rGiDi 308 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQG-------FSALALHGDLEQRDRDQVLVRFANRSCSVLVATD------VAARGLDI 308 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec------ccccccch
Confidence 3579999999999999999887653 78889999988766554442 2579999993 33445678
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
.++.++|.-+
T Consensus 309 ~~v~~VI~~d 318 (460)
T PRK11776 309 KALEAVINYE 318 (460)
T ss_pred hcCCeEEEec
Confidence 8888888544
No 339
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.86 E-value=1.5 Score=45.15 Aligned_cols=71 Identities=8% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
+.|++..++.|+|||..+.... .... ....-++++++.+|+.++...+.. +.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~-----~~l~-~~g~sv~f~~~~el~~~Lk~~~~~-~~--------------------- 156 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIG-----NELL-KAGISVLFITAPDLLSKLKAAFDE-GR--------------------- 156 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHH-----HHHH-HcCCeEEEEEHHHHHHHHHHHHhc-Cc---------------------
Q ss_pred HHHhccCCcEEEECchhhHHHHhCCCcc-cCCcceEeeccc
Q psy8712 331 MSVLSSGVDIVVGTPGRMEDLISGGHLS-LTHCRFFVLDEA 370 (651)
Q Consensus 331 ~~~L~~~~dIlV~TP~rL~~ll~~~~l~-l~~l~~lViDEa 370 (651)
....... ++++++|||||.
T Consensus 157 ---------------------~~~~l~~~l~~~dlLIiDDl 176 (254)
T COG1484 157 ---------------------LEEKLLRELKKVDLLIIDDI 176 (254)
T ss_pred ---------------------hHHHHHHHhhcCCEEEEecc
No 340
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=72.82 E-value=3.3 Score=39.72 Aligned_cols=49 Identities=4% Similarity=0.001 Sum_probs=31.6
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhh
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFK 308 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~ 308 (651)
+++.+..|+|||..+...+... ...+..+++++ +.+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~-----~~~g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG-----LARGEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-----HHCCCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 5678899999999876544111 12355677765 4455677777766654
No 341
>PRK13342 recombination factor protein RarA; Reviewed
Probab=72.56 E-value=7.3 Score=43.03 Aligned_cols=19 Identities=5% Similarity=-0.108 Sum_probs=15.4
Q ss_pred CCCeEEEecCCCCceeeee
Q psy8712 251 PKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~ 269 (651)
....+..+..|+|||..+.
T Consensus 36 ~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468889999999998754
No 342
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.42 E-value=2.1 Score=45.39 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCCcHHHHhh-HHhHhcCCceEeeecCCCCccceeehhhHHHH
Q psy8712 22 WLLPTDVQAEA-IPLILGGGDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 22 ~~~pt~iQ~~a-ip~il~g~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
+..+++.|.+- +-++..+++++++++|||||| .++.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhC
Confidence 45567777665 445568899999999999999 4444444433
No 343
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=72.40 E-value=11 Score=44.02 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccc
Q psy8712 7 MGVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVI 85 (651)
Q Consensus 7 l~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (651)
+...+...+.|++ +||..|+|+|.++|+.++.|+|+++.||||||||+||++|++.. ...++++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVi 71 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVV 71 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEE
Confidence 4455666667755 89999999999999999999999999999999999999999842 2358999
Q ss_pred cCceeeeccccccccc
Q psy8712 86 SPTWILSVWDRDTAMA 101 (651)
Q Consensus 86 ~p~~~l~~~~~~~~~~ 101 (651)
+|+++|+.++.+....
T Consensus 72 sPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 72 SPLISLMKDQVDQLLA 87 (607)
T ss_pred ecHHHHHHHHHHHHHH
Confidence 9999998887665544
No 344
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=72.38 E-value=2.3 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred CceEeeecCCCCccceeehhhHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
..+++.||||||||..+++|-+.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL 234 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTAL 234 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhh
Confidence 58999999999999999999754
No 345
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=72.36 E-value=11 Score=43.00 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=54.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
.+++||.++|+.-|..+.+.+.... ++++..+.|+.+..++...++ ...+|||+|. +-...+++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~------g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd------vl~rGiDi 434 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVT------GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG------VLGRGVDL 434 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhcc------CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec------HhhccCCc
Confidence 4689999999999988888776432 278888999988766655443 3579999994 33445678
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
.++++||.=
T Consensus 435 p~v~~VI~~ 443 (518)
T PLN00206 435 LRVRQVIIF 443 (518)
T ss_pred ccCCEEEEe
Confidence 899988853
No 346
>KOG1133|consensus
Probab=72.27 E-value=3.4 Score=47.43 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|.+||..-+..+ -.|+=-+..+|||+|||+..+-..|..+..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 7999998876654 467777889999999999988888887754
No 347
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.12 E-value=1.8 Score=38.31 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=13.6
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
++.+++.+|+|||||
T Consensus 2 ~~~~~l~G~~G~GKT 16 (148)
T smart00382 2 GEVILIVGPPGSGKT 16 (148)
T ss_pred CCEEEEECCCCCcHH
Confidence 567899999999999
No 348
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=71.69 E-value=14 Score=41.41 Aligned_cols=73 Identities=11% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.+++++-+..+++.+...+ +++..+.|+.+..++...+. ....|||+|. +-...++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~------~l~~GID 400 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDG-------INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD------VAGRGIH 400 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCCc
Confidence 34589999999999999888876543 67788888888766554432 2579999993 3344567
Q ss_pred cCCcceEeec
Q psy8712 359 LTHCRFFVLD 368 (651)
Q Consensus 359 l~~l~~lViD 368 (651)
+.+++++|..
T Consensus 401 i~~v~~VI~~ 410 (475)
T PRK01297 401 IDGISHVINF 410 (475)
T ss_pred ccCCCEEEEe
Confidence 8888888864
No 349
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.68 E-value=9.3 Score=44.14 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=25.5
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+-+++||||+|.|....+ ..+.+.+...|. ..-+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~------~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPE------HLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCC------CeEEEEEe
Confidence 5678999999999976433 344555555554 35555554
No 350
>PRK08181 transposase; Validated
Probab=71.63 E-value=3.4 Score=42.85 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=27.3
Q ss_pred HHHHHcCCCC---CcHHHHhhHH----hHhcCCceEeeecCCCCcc
Q psy8712 15 KAVEEMDWLL---PTDVQAEAIP----LILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 15 ~~l~~~~~~~---pt~iQ~~aip----~il~g~dvl~~a~TGsGKT 53 (651)
+.++.+.|.. ..+.|..++. .+-.+.++++.+|+|+|||
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKT 120 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKS 120 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHH
Confidence 4566665543 3456666653 3447789999999999999
No 351
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=71.41 E-value=23 Score=31.16 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hcc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.+++..-+.++.+.++.. ...+..+.|+.+....... +.+ ...|+++|.. ....++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d 93 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGID 93 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcC
Confidence 3457899999999999999888762 2677888888764433322 233 4589998851 233455
Q ss_pred cCCcceEeeccch
Q psy8712 359 LTHCRFFVLDEAD 371 (651)
Q Consensus 359 l~~l~~lViDEaD 371 (651)
+...+.+|+.+.+
T Consensus 94 ~~~~~~vi~~~~~ 106 (131)
T cd00079 94 LPNVSVVINYDLP 106 (131)
T ss_pred hhhCCEEEEeCCC
Confidence 6677888877653
No 352
>PRK05580 primosome assembly protein PriA; Validated
Probab=71.41 E-value=47 Score=39.27 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCcHHHHhhHHhHhcC---CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccc
Q psy8712 24 LPTDVQAEAIPLILGG---GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAM 100 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g---~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~ 100 (651)
.+|+.|++|++.|+.+ +++++.|+||||||.+|+.++.+.+.. +.++++++|+++|..|......
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------------g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------------GKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------------CCeEEEEeCcHHHHHHHHHHHH
Confidence 4899999999999974 899999999999999998887765543 4578999999999888766554
Q ss_pred c
Q psy8712 101 A 101 (651)
Q Consensus 101 ~ 101 (651)
.
T Consensus 212 ~ 212 (679)
T PRK05580 212 A 212 (679)
T ss_pred H
Confidence 3
No 353
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.41 E-value=10 Score=42.86 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=18.5
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+..++..+..|+|||+++...+
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHH
Confidence 45679999999999999875544
No 354
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=71.40 E-value=28 Score=41.11 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=66.6
Q ss_pred HHHHHHH-HHcCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccc
Q psy8712 11 PEIGKAV-EEMDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQ 83 (651)
Q Consensus 11 ~~l~~~l-~~~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~ 83 (651)
..+++.+ ..++| .||++|.+||+.|+.+ .|+|++|+||||||.+|++|+++.+.. +.+++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~------------g~q~l 314 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA------------GYQAA 314 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc------------CCeEE
Confidence 3444444 56888 5999999999999987 489999999999999999999987643 55799
Q ss_pred cccCceeeeccccccccccC
Q psy8712 84 VISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 84 ~~~p~~~l~~~~~~~~~~~~ 103 (651)
+++|+.+|+.|..+....+.
T Consensus 315 ilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 315 LMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred EEeccHHHHHHHHHHHHHHH
Confidence 99999999999888776554
No 355
>PRK06835 DNA replication protein DnaC; Validated
Probab=71.37 E-value=23 Score=37.84 Aligned_cols=133 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH--HH-----HHHHhccCCcEEEECchhhHHHHhCCC---------
Q psy8712 293 SRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV--KD-----QMSVLSSGVDIVVGTPGRMEDLISGGH--------- 356 (651)
Q Consensus 293 TreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~--~~-----q~~~L~~~~dIlV~TP~rL~~ll~~~~--------- 356 (651)
.++-+.++.+.++.|...+.... ....++|.... .. ....+.++..|+..|...+.+.+....
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~ 239 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEE 239 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHH
Confidence 46667777777777766554333 55777775432 11 112345678899888888877653211
Q ss_pred --cccCCcceEeeccchhhhhccc-hHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHH-----HHHHhccCCeEEE
Q psy8712 357 --LSLTHCRFFVLDEADGLLKQGY-GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK-----MAERLMYFPTWVD 428 (651)
Q Consensus 357 --l~l~~l~~lViDEaD~ll~~gf-~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~-----l~~~~l~~p~~i~ 428 (651)
-.+.++++||||+.+......+ ...+-.++...-.. +.++ ++|..+++.++.. +..++......+.
T Consensus 240 ~~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~-----~k~t-IiTSNl~~~el~~~~~eri~SRL~~~~~~i~ 313 (329)
T PRK06835 240 VYDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLR-----QKKM-IISTNLSLEELLKTYSERISSRLLGNFTLLK 313 (329)
T ss_pred HHHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHC-----CCCE-EEECCCCHHHHHHHHhHHHHHHHHcCCEEEE
Confidence 1246889999999976543222 23344555443220 2344 4555554435532 4445555555555
Q ss_pred ccCC
Q psy8712 429 LKGE 432 (651)
Q Consensus 429 ~~~~ 432 (651)
+.++
T Consensus 314 ~~G~ 317 (329)
T PRK06835 314 FYGE 317 (329)
T ss_pred ecCc
Confidence 5443
No 356
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=70.89 E-value=13 Score=43.51 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=53.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.|+|+.-+.++++.+...+ +.+..++|+.+..+....+ + ...+|||+| +.+. .-+++
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g-------~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~a-rGIDi 311 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNG-------YNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAA-RGLDV 311 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCC-------CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHh-cCCCc
Confidence 4579999999999999998887643 6788889988766554443 3 368999999 3333 44778
Q ss_pred CCcceEee
Q psy8712 360 THCRFFVL 367 (651)
Q Consensus 360 ~~l~~lVi 367 (651)
.++.+||.
T Consensus 312 p~V~~VI~ 319 (629)
T PRK11634 312 ERISLVVN 319 (629)
T ss_pred ccCCEEEE
Confidence 88998875
No 357
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.43 E-value=4.5 Score=41.41 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=26.9
Q ss_pred cCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 225 AFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 225 ~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.|||+-.-+.+...++++-. +++..++..+..|+|||+.+....
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLS----QREGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHh----cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 44555554444444433311 234468899999999999876554
No 358
>KOG0329|consensus
Probab=70.38 E-value=2.8 Score=42.49 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=34.8
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.-||+.||..|.+++.-+|. .+|.+-++.+|.|||.+|+++
T Consensus 59 dcgfehpsevqhecipqail-------------------gmdvlcqaksgmgktavfvl~ 99 (387)
T KOG0329|consen 59 DCGFEHPSEVQHECIPQAIL-------------------GMDVLCQAKSGMGKTAVFVLA 99 (387)
T ss_pred hccCCCchHhhhhhhhHHhh-------------------cchhheecccCCCceeeeehh
Confidence 56899999999999965554 468999999999999999865
No 359
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=70.20 E-value=2 Score=44.65 Aligned_cols=19 Identities=37% Similarity=0.678 Sum_probs=16.6
Q ss_pred HhcCCceEeeecCCCCccc
Q psy8712 36 ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT~ 54 (651)
+..++.|++++|||+|||.
T Consensus 30 ~~~~~pvLl~G~~GtGKT~ 48 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTS 48 (272)
T ss_dssp HHCTEEEEEESSTTSSHHH
T ss_pred HHcCCcEEEECCCCCchhH
Confidence 3478899999999999993
No 360
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=70.13 E-value=2.6 Score=41.85 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=13.3
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
.+++++++.+|.|||||.
T Consensus 20 aG~h~lLl~GppGtGKTm 37 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTM 37 (206)
T ss_dssp HCC--EEEES-CCCTHHH
T ss_pred cCCCCeEEECCCCCCHHH
Confidence 477899999999999994
No 361
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=70.12 E-value=2.9 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.9
Q ss_pred CceEeeecCCCCccceeehhhHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
..+++.||||||||..+++|-+-
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL 247 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTAL 247 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhh
Confidence 57999999999999999999764
No 362
>PRK07952 DNA replication protein DnaC; Validated
Probab=70.11 E-value=9.6 Score=38.93 Aligned_cols=21 Identities=5% Similarity=-0.029 Sum_probs=17.4
Q ss_pred CCeEEEecCCCCceeeeeccc
Q psy8712 252 KDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+++..++.|+|||..+...+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999999876544
No 363
>KOG0386|consensus
Probab=69.72 E-value=1.8 Score=51.48 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
+..-|-|...-.|-|||...+..+.++-..+ ...+|. |||+|+--|..= -..|.+.. |.+......|.-...
T Consensus 411 NNnLNGILADEMGLGKTIQtIsLitYLmE~K-~~~GP~-LvivPlstL~NW----~~Ef~kWa--PSv~~i~YkGtp~~R 482 (1157)
T KOG0386|consen 411 NNNLNGILADEMGLGKTIQTISLITYLMEHK-QMQGPF-LIIVPLSTLVNW----SSEFPKWA--PSVQKIQYKGTPQQR 482 (1157)
T ss_pred CCCcccccchhcccchHHHHHHHHHHHHHHc-ccCCCe-EEeccccccCCc----hhhccccc--cceeeeeeeCCHHHH
Confidence 3444566677889999998877774443322 244665 778999877652 22333332 245544444432211
Q ss_pred H--HHHHhccCCcEEEECchhhHHHHhCCCcccCCc--ceEeeccchhhhh
Q psy8712 329 D--QMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHC--RFFVLDEADGLLK 375 (651)
Q Consensus 329 ~--q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l--~~lViDEaD~ll~ 375 (651)
. +.+......+||++|-+.+.. ..-.|+.| .++||||.|+|-.
T Consensus 483 ~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 483 SGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred hhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccc
Confidence 1 112223468999999766533 22223444 5899999998853
No 364
>KOG3089|consensus
Probab=69.58 E-value=3.8 Score=40.51 Aligned_cols=32 Identities=38% Similarity=0.804 Sum_probs=30.1
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeec
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLD 368 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViD 368 (651)
..++-||||+|+..++..+.+.++.+.++|+|
T Consensus 196 ~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 196 VVHLGIGTPGRIKELVKQGGFNLSPLKFIILD 227 (271)
T ss_pred ceeEeecCcHHHHHHHHhcCCCCCcceeEEee
Confidence 57999999999999999999999999999988
No 365
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.48 E-value=7.6 Score=43.58 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=17.2
Q ss_pred CeEEEecCCCCceeeeeccc
Q psy8712 253 DYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~ 272 (651)
.++..+..|+|||.++...+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999987655
No 366
>KOG0347|consensus
Probab=69.39 E-value=2.5 Score=47.21 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=36.0
Q ss_pred cccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 213 LAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 213 ~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.||..|..+|.-.|.||+..| .|+++.+.||||||.+|.+.+
T Consensus 199 ~gFs~Pt~IQsl~lp~ai~gk------------------~DIlGaAeTGSGKTLAFGIPi 240 (731)
T KOG0347|consen 199 LGFSRPTEIQSLVLPAAIRGK------------------VDILGAAETGSGKTLAFGIPI 240 (731)
T ss_pred cCCCCCccchhhcccHhhccc------------------hhcccccccCCCceeeecchh
Confidence 578889999888887777754 689999999999999998766
No 367
>CHL00181 cbbX CbbX; Provisional
Probab=69.33 E-value=17 Score=38.09 Aligned_cols=21 Identities=0% Similarity=-0.224 Sum_probs=16.7
Q ss_pred CCCeEEEecCCCCceeeeecc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a 271 (651)
..+++..++.|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 445888999999999976543
No 368
>PTZ00424 helicase 45; Provisional
Probab=68.99 E-value=17 Score=39.66 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=53.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---cc-CCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---SS-GVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~~-~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|++-+..+.+.+... ++.+..+.|+.+..++...+ ++ ..+|||+|. +-...+++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~-------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~------~l~~GiDi 333 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER-------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD------LLARGIDV 333 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc------cccCCcCc
Confidence 457999999999998888877654 27888999998876655443 22 589999993 33445678
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
.+++++|.-
T Consensus 334 p~v~~VI~~ 342 (401)
T PTZ00424 334 QQVSLVINY 342 (401)
T ss_pred ccCCEEEEE
Confidence 888888853
No 369
>PRK12377 putative replication protein; Provisional
Probab=68.82 E-value=9 Score=39.23 Aligned_cols=22 Identities=0% Similarity=-0.005 Sum_probs=17.7
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+++..++.|+|||..+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999866544
No 370
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.55 E-value=9.2 Score=41.46 Aligned_cols=21 Identities=0% Similarity=-0.073 Sum_probs=16.9
Q ss_pred CCeEEEecCCCCceeeeeccc
Q psy8712 252 KDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.-++..+..|+|||..+...+
T Consensus 39 h~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 357899999999999876544
No 371
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.46 E-value=17 Score=40.91 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=17.8
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+..++..++.|+|||+++...+
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4457899999999999876554
No 372
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=68.25 E-value=36 Score=40.03 Aligned_cols=78 Identities=13% Similarity=0.331 Sum_probs=57.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l 357 (651)
..+.++||.++|+.-+..+.+.+...+ +++..+.|+.+..+....+ + ...+|+|+|- .+. ..+
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~g-------i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~-rGf 510 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELG-------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR-EGL 510 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcc-------eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh-CCc
Confidence 456789999999999999888887653 7888888877654443333 2 3578999993 343 456
Q ss_pred ccCCcceEeeccchh
Q psy8712 358 SLTHCRFFVLDEADG 372 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ 372 (651)
++..++++|+=|++.
T Consensus 511 dlp~v~lVii~d~ei 525 (652)
T PRK05298 511 DIPEVSLVAILDADK 525 (652)
T ss_pred cccCCcEEEEeCCcc
Confidence 788999998877764
No 373
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=68.20 E-value=17 Score=38.73 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeC-CccHHHHHHHhccC-CcEEEECchhhHHHHhCCCcccC
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIG-GVNVKDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~G-g~~~~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.+--+||.+|+.+.++|+.+.++.-..+ .++.++.. .....++...+++| .+|+|+|. +-...+.+.
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~-----~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT------ILERGVTfp 372 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPK-----ETIASVHSEDQHRKEKVEAFRDGKITLLITTT------ILERGVTFP 372 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCc-----cceeeeeccCccHHHHHHHHHcCceEEEEEee------hhhcccccc
Confidence 3445899999999999999999544322 45444433 34567777778775 69999995 334456789
Q ss_pred CcceEeeccchhhhhc
Q psy8712 361 HCRFFVLDEADGLLKQ 376 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~ 376 (651)
+++.+|++--|+++..
T Consensus 373 ~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 373 NVDVFVLGAEHRVFTE 388 (441)
T ss_pred cceEEEecCCcccccH
Confidence 9999999988887754
No 374
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=68.10 E-value=4 Score=41.85 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=13.8
Q ss_pred CCceEeeecCCCCccce
Q psy8712 39 GGDVLMAAETGSGKTGA 55 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~a 55 (651)
.+=|++.++|||||+-.
T Consensus 127 RGLviiVGaTGSGKSTt 143 (375)
T COG5008 127 RGLVIIVGATGSGKSTT 143 (375)
T ss_pred CceEEEECCCCCCchhh
Confidence 35588999999999844
No 375
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.02 E-value=7.8 Score=43.98 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=16.4
Q ss_pred CeEEEecCCCCceeeeeccc
Q psy8712 253 DYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~ 272 (651)
-++..+..|+|||+++...+
T Consensus 38 a~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46889999999999976544
No 376
>KOG0926|consensus
Probab=67.86 E-value=3.7 Score=47.89 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=43.6
Q ss_pred ceeeccccccCCCCCCCCCEEEEeCC--------CCChhh----------hhhhcCccccCCCceEEEEeeeCC
Q psy8712 464 DGVHARDNARPGIDISGLPFIINMTL--------PDDKAN----------YVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 464 ~~l~~td~~~rGIDip~v~~VIn~dl--------P~s~~~----------YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
-++++|+++..-|.||+|.+||..+. -..+++ --||+|||||-| .|+||-|++..
T Consensus 632 LcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 632 LCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred EEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 35778999999999999999997444 333333 369999999985 59999999863
No 377
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.31 E-value=17 Score=43.13 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=17.9
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+.-+..++.+|+|||+.....+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34567889999999999876554
No 378
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.18 E-value=9.8 Score=44.20 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=17.2
Q ss_pred CCeEEEecCCCCceeeeeccc
Q psy8712 252 KDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.-++..+..|+|||.++...+
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999999986654
No 379
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=67.06 E-value=2.5 Score=41.67 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=12.7
Q ss_pred ceEeeecCCCCccce
Q psy8712 41 DVLMAAETGSGKTGA 55 (651)
Q Consensus 41 dvl~~a~TGsGKT~a 55 (651)
=+++++|||||||-.
T Consensus 3 lilI~GptGSGKTTl 17 (198)
T cd01131 3 LVLVTGPTGSGKSTT 17 (198)
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999943
No 380
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=66.99 E-value=2.9 Score=33.13 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.5
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|...++.+++|||||-
T Consensus 22 ~g~~tli~G~nGsGKST 38 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKST 38 (62)
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45579999999999994
No 381
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=66.51 E-value=19 Score=41.83 Aligned_cols=73 Identities=29% Similarity=0.328 Sum_probs=62.1
Q ss_pred HHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeec
Q psy8712 15 KAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSV 93 (651)
Q Consensus 15 ~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~ 93 (651)
++|++ +||..++|+|.++|+.++.|+|++++||||+|||+||++|++.. ...+++++|+++|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------------~g~~lVisPl~sL~~ 67 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------------KGLTVVISPLISLMK 67 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------------CCcEEEEcCCHHHHH
Confidence 45554 99999999999999999999999999999999999999999841 235789999999988
Q ss_pred ccccccccc
Q psy8712 94 WDRDTAMAI 102 (651)
Q Consensus 94 ~~~~~~~~~ 102 (651)
++.....+.
T Consensus 68 dq~~~l~~~ 76 (591)
T TIGR01389 68 DQVDQLRAA 76 (591)
T ss_pred HHHHHHHHc
Confidence 776655443
No 382
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=66.40 E-value=27 Score=37.79 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHhhHHhHhcCCc--eEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 28 VQAEAIPLILGGGD--VLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 28 iQ~~aip~il~g~d--vl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
.|.++++.+..+.+ ++++||||||||.+|++|++. . ...+++++|+.+|..+.....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~------------~~~~~~~~P~~aL~~~~~~~~ 59 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---G------------ENDTIALYPTNALIEDQTEAI 59 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---c------------CCCEEEEeChHHHHHHHHHHH
Confidence 49999999999875 788999999999999999984 1 235788999999887765543
No 383
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=66.40 E-value=2.8 Score=44.71 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=19.0
Q ss_pred cCCceEeeecCCCCccceeehhhHH
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
+|+-||+++|+||||| |..+.+-+
T Consensus 64 aGrgiLi~GppgTGKT-AlA~gIa~ 87 (450)
T COG1224 64 AGRGILIVGPPGTGKT-ALAMGIAR 87 (450)
T ss_pred cccEEEEECCCCCcHH-HHHHHHHH
Confidence 6789999999999999 44444444
No 384
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.99 E-value=22 Score=39.43 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeC-C-HHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEP-S-RELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~P-T-reLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
+.+.+...+.+|+|||+.....++.... ...+.++.++.- + |.-+. ++++.++..++ +.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~---~~~g~~V~li~~D~~r~~a~---eqL~~~a~~~~---vp---------- 280 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYAL---LYGKKKVALITLDTYRIGAV---EQLKTYAKIMG---IP---------- 280 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEECCccHHHHH---HHHHHHHHHhC---Cc----------
Confidence 4567888899999999886654322110 012234444432 1 21111 22222222211 11
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
-.++.+|..+...+.. +.+.++||||.+-+.-. ......+..++..... ...-.+++||
T Consensus 281 -----------~~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~-----~~~~~LVl~a 340 (424)
T PRK05703 281 -----------VEVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE-----PIDVYLVLSA 340 (424)
T ss_pred -----------eEccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC-----CCeEEEEEEC
Confidence 1223344444444432 34578899998754221 1123345555552111 0245788999
Q ss_pred ccChHHHHHHHHHhc
Q psy8712 407 TLHDFDVKKMAERLM 421 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l 421 (651)
|....++.++...|-
T Consensus 341 ~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 341 TTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCHHHHHHHHHHhC
Confidence 988767777777664
No 385
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=65.97 E-value=13 Score=43.10 Aligned_cols=23 Identities=0% Similarity=-0.070 Sum_probs=18.7
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+.-++..+..|+|||..+...+
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999986655
No 386
>PRK09183 transposase/IS protein; Provisional
Probab=65.58 E-value=3.7 Score=42.29 Aligned_cols=39 Identities=28% Similarity=0.516 Sum_probs=25.0
Q ss_pred HHHHHcCCCCCcHH---HHhhH---HhHhcCCceEeeecCCCCcc
Q psy8712 15 KAVEEMDWLLPTDV---QAEAI---PLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 15 ~~l~~~~~~~pt~i---Q~~ai---p~il~g~dvl~~a~TGsGKT 53 (651)
+.+++++|..+..+ |...+ ..+-.|..+++.+|+|+|||
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKT 116 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKT 116 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHH
Confidence 45566666543332 22222 23456789999999999999
No 387
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=65.51 E-value=3.1 Score=43.99 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=16.2
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..|+.++++++||||||
T Consensus 141 v~~~~~ili~G~tGsGKT 158 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKT 158 (308)
T ss_pred hhCCCEEEEECCCCCCHH
Confidence 347889999999999999
No 388
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=65.11 E-value=5.4 Score=38.78 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=20.7
Q ss_pred hhHHhHhcCCc--eEeeecCCCCccceee
Q psy8712 31 EAIPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 31 ~aip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
.++..++.|.| +++.++||||||.+..
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~ 42 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTME 42 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEecC
Confidence 56777788866 5677999999996643
No 389
>KOG1533|consensus
Probab=64.97 E-value=4.7 Score=40.61 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEeeecCCCCccceeehhhHHHHHH
Q psy8712 42 VLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 42 vl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.++.+|+||||| +||.-..|.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 478999999999 999999998876
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=64.76 E-value=4.9 Score=40.89 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhh---------HHhHhcCCceEeeecCCCCcc
Q psy8712 7 MGVLPEIGKAVEEMDWLLPTDVQAEA---------IPLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 7 l~l~~~l~~~l~~~~~~~pt~iQ~~a---------ip~il~g~dvl~~a~TGsGKT 53 (651)
+.++..+=+...+.||..=+.+.+.+ .--+-.|.-+++.|++|+|||
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT 78 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKT 78 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHH
Confidence 34555555555666765333333222 222233456888999999999
No 391
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=64.64 E-value=8.4 Score=44.94 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=20.6
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~ 391 (651)
.+.+++||||||+|....+ ..+.+++..-|.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~ 148 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPE 148 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCC
Confidence 4678999999999876443 334445555444
No 392
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=64.51 E-value=14 Score=39.60 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeec
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SAT 407 (651)
..-+.+||||||.|-... ...+.++++.-|. +..+|+.|..
T Consensus 105 ~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~------~~~fiL~t~~ 145 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNA-ANALLKSLEEPSG------DTVLLLISHQ 145 (328)
T ss_pred CCCeEEEECChhhCCHHH-HHHHHHHHhCCCC------CeEEEEEECC
Confidence 567889999999987542 3334445555443 4666655544
No 393
>PRK06835 DNA replication protein DnaC; Validated
Probab=64.48 E-value=6.4 Score=42.11 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.2
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.+..+++.++||+|||.
T Consensus 182 ~~~~Lll~G~~GtGKTh 198 (329)
T PRK06835 182 NNENLLFYGNTGTGKTF 198 (329)
T ss_pred cCCcEEEECCCCCcHHH
Confidence 46899999999999994
No 394
>PRK04195 replication factor C large subunit; Provisional
Probab=64.25 E-value=11 Score=42.46 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.4
Q ss_pred CCCCeEEEecCCCCceeeeec
Q psy8712 250 PPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~ 270 (651)
+++.++..+..|+|||..+..
T Consensus 38 ~~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999987543
No 395
>KOG0745|consensus
Probab=64.03 E-value=3.3 Score=45.18 Aligned_cols=18 Identities=50% Similarity=0.610 Sum_probs=15.2
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
|..-+||+.+|||||||+
T Consensus 224 LeKSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTL 241 (564)
T ss_pred eecccEEEECCCCCchhH
Confidence 345689999999999994
No 396
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=63.93 E-value=7.9 Score=41.63 Aligned_cols=39 Identities=23% Similarity=0.103 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCCcHHHHhhHHhH-hcCCceEeeecCCCCccc
Q psy8712 14 GKAVEEMDWLLPTDVQAEAIPLI-LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 14 ~~~l~~~~~~~pt~iQ~~aip~i-l~g~dvl~~a~TGsGKT~ 54 (651)
++.|.+.|+ .++.+.+.+..+ ..+++++++++||||||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT 193 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT 193 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 344445565 345566655544 467899999999999993
No 397
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.09 E-value=13 Score=42.59 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=25.1
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+-+++||||||.|.... ...+.+.+...|. ...+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~------~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPE------YVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCC------CceEEEEE
Confidence 466899999999987643 3345556665544 35555544
No 398
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=62.80 E-value=3.5 Score=36.95 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=11.1
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.++-+++.||+|+|||.
T Consensus 3 ~~~~~~i~G~~G~GKT~ 19 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTT 19 (131)
T ss_dssp ----EEEEE-TTSSHHH
T ss_pred CCcccEEEcCCCCCHHH
Confidence 35678999999999993
No 399
>PRK06921 hypothetical protein; Provisional
Probab=62.77 E-value=9.2 Score=39.60 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.5
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.+..+++.++||+|||
T Consensus 116 ~~~~l~l~G~~G~GKT 131 (266)
T PRK06921 116 RKNSIALLGQPGSGKT 131 (266)
T ss_pred CCCeEEEECCCCCcHH
Confidence 4678999999999999
No 400
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=62.71 E-value=23 Score=42.75 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=56.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
...+||.+|+++-+.++++.+++... +++.+..++|+.+..++...+.. ...|||+|. +....+++
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~----~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn------IAErgItI 278 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD----SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN------IAETSLTI 278 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC----CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc------hHhhcccc
Confidence 35799999999999988888875321 24889999999998888877753 358999995 55566777
Q ss_pred CCcceEe
Q psy8712 360 THCRFFV 366 (651)
Q Consensus 360 ~~l~~lV 366 (651)
.+|++||
T Consensus 279 p~V~~VI 285 (819)
T TIGR01970 279 EGIRVVI 285 (819)
T ss_pred cCceEEE
Confidence 8888665
No 401
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=62.52 E-value=64 Score=31.30 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=38.2
Q ss_pred cCCcceEeeccchhhhhccch--HHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 359 LTHCRFFVLDEADGLLKQGYG--NLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~--~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
-...++||+||+-..++.++. +++..+++.-|. ..-+|+..-..|+ .+.+++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~------~~evILTGR~~p~-~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPS------HVDVILTGPEMPE-SLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCC------CCEEEEECCCCCH-HHHHhCC
Confidence 356789999999998888864 457777777665 4566766666665 6666554
No 402
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=62.34 E-value=29 Score=39.46 Aligned_cols=133 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEe------------CCHHHHHHHHHHHHHhhccCCC
Q psy8712 246 FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIE------------PSRELAEQTFNQIIKFKKFITD 313 (651)
Q Consensus 246 ~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~------------PTreLa~Qi~~~~~~l~~~~~~ 313 (651)
+..+||++++..+..|+|||.++-..+..+.............++. -+.....++++.++.....
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~--- 287 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASD--- 287 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhc---
Q ss_pred CCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccch-----------HHH
Q psy8712 314 PKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYG-----------NLI 382 (651)
Q Consensus 314 ~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~-----------~~i 382 (651)
....+|+|||+|.++...-. ..+
T Consensus 288 ----------------------------------------------g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 288 ----------------------------------------------GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred ----------------------------------------------CCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Q ss_pred HHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC
Q psy8712 383 DRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433 (651)
Q Consensus 383 ~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~ 433 (651)
...+..+.. ...++++.||-.+..+..-..+--+-...|.+...+
T Consensus 322 L~~LDgl~~------~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd 366 (512)
T TIGR03689 322 LSELDGVES------LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPD 366 (512)
T ss_pred HHHhccccc------CCceEEEeccCChhhCCHhhcCccccceEEEeCCCC
No 403
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=61.13 E-value=17 Score=39.55 Aligned_cols=22 Identities=0% Similarity=-0.141 Sum_probs=17.9
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+--++..+..|.||+..+...+
T Consensus 41 ~HA~Lf~Gp~G~GK~~lA~~~A 62 (365)
T PRK07471 41 HHAWLIGGPQGIGKATLAYRMA 62 (365)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999876655
No 404
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=61.07 E-value=28 Score=36.36 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD 329 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~ 329 (651)
|..+.+..+..|+|||. +|..+.+.+...+....
T Consensus 57 ~~~~vll~G~pGTGKT~-----------------------------lA~~ia~~l~~~g~~~~----------------- 90 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTT-----------------------------VALRMAQILHRLGYVRK----------------- 90 (284)
T ss_pred CCceEEEEcCCCCCHHH-----------------------------HHHHHHHHHHHcCCccc-----------------
Q ss_pred HHHHhccCCcEEEECchhhHHHHhCCC-------cccCCcceEeeccchhh--------hhccchHHHHHHHhcCCCccC
Q psy8712 330 QMSVLSSGVDIVVGTPGRMEDLISGGH-------LSLTHCRFFVLDEADGL--------LKQGYGNLIDRMHKQIPKITS 394 (651)
Q Consensus 330 q~~~L~~~~dIlV~TP~rL~~ll~~~~-------l~l~~l~~lViDEaD~l--------l~~gf~~~i~~il~~lp~~~~ 394 (651)
..++..+...+...+.... +.-..=.+|+|||+|.| +...-...+..++..-..
T Consensus 91 --------~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~--- 159 (284)
T TIGR02880 91 --------GHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRD--- 159 (284)
T ss_pred --------ceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCC---
Q ss_pred CCCceeEEEEeec
Q psy8712 395 DGKRLQMIVCSAT 407 (651)
Q Consensus 395 ~~~~~Q~l~~SAT 407 (651)
+..+|+.+.+
T Consensus 160 ---~~~vI~a~~~ 169 (284)
T TIGR02880 160 ---DLVVILAGYK 169 (284)
T ss_pred ---CEEEEEeCCc
No 405
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=61.00 E-value=11 Score=40.77 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=25.3
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
..-+++||||||.|-... ...+.++++..|. +..++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~------~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPA------RALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCC------CceEEEEE
Confidence 467899999999986533 3345555655443 45666665
No 406
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=60.93 E-value=15 Score=43.16 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=18.7
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+..++..+..|+|||.++...+
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45578999999999999876544
No 407
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=60.91 E-value=17 Score=38.48 Aligned_cols=119 Identities=7% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCc
Q psy8712 246 FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV 325 (651)
Q Consensus 246 ~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~ 325 (651)
...+..+.++..+..|+|||. ||.-+.+.+..-... .+...+....
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~-----------------------------la~~~~~~l~~~~~~-----~~~~~i~~~~ 76 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTA-----------------------------AVRALARELYGDPWE-----NNFTEFNVAD 76 (337)
T ss_pred HhCCCCceEEEECCCCCCHHH-----------------------------HHHHHHHHhcCcccc-----cceEEechhh
Q ss_pred cHHHHHHHhccCCcEE-------------EECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCc
Q psy8712 326 NVKDQMSVLSSGVDIV-------------VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392 (651)
Q Consensus 326 ~~~~q~~~L~~~~dIl-------------V~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~ 392 (651)
....-...+...++.. +.....+........-....-++|||||+|.+-. .....+..++...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~- 154 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-DAQQALRRIMEQYSR- 154 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-HHHHHHHHHHHhccC-
Q ss_pred cCCCCceeEEEEe
Q psy8712 393 TSDGKRLQMIVCS 405 (651)
Q Consensus 393 ~~~~~~~Q~l~~S 405 (651)
...+|+.+
T Consensus 155 -----~~~~Il~~ 162 (337)
T PRK12402 155 -----TCRFIIAT 162 (337)
T ss_pred -----CCeEEEEe
No 408
>KOG1969|consensus
Probab=60.62 E-value=25 Score=41.16 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=25.7
Q ss_pred cccCCCCCCCCCCCCeEEEecCCCCceeeeec
Q psy8712 239 FNFGATPFKHEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 239 ~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
++.+..|..-|+++-.+.|+..|-|||+.+..
T Consensus 314 ~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 314 LDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred hhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 45556677888888899999999999997543
No 409
>KOG1942|consensus
Probab=60.53 E-value=4.4 Score=42.07 Aligned_cols=27 Identities=44% Similarity=0.678 Sum_probs=21.2
Q ss_pred hcCCceEeeecCCCCccceeehhhHHHH
Q psy8712 37 LGGGDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
+.|+-||+++|.|+||| |..|.+-|-+
T Consensus 62 maGravLlaGppgtGKT-AlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKT-ALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchh-HHHHHHHHHh
Confidence 37899999999999999 5555555533
No 410
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=60.50 E-value=5.7 Score=44.07 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred HhcCCceEeeecCCCCccc-----eeehhhH
Q psy8712 36 ILGGGDVLMAAETGSGKTG-----AFCLPII 61 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT~-----af~lp~l 61 (651)
..+|+++++.+|.|||||+ ..+||=+
T Consensus 195 AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 195 AAGGHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred HhcCCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 3488999999999999994 4556644
No 411
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=60.13 E-value=46 Score=37.61 Aligned_cols=117 Identities=15% Similarity=0.311 Sum_probs=80.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hcc-CCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSS-GVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~-~~dIlV~TP~rL~~ll~~~~l 357 (651)
..+-++||.+=|+-+|..+.+.+..++ +++..+.++.+.-+.... |+. ..||+||- ++++ ..+
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~g-------ikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR-EGL 510 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELG-------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGL 510 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcC-------ceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh-ccC
Confidence 445789999999999999888888775 999999999886555544 444 47999997 3454 457
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
++..+.++.|=+||. .||...-..++..+....++ .+-.+|+..-.++. .++.-
T Consensus 511 DiPEVsLVAIlDADK---eGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~-sM~~A 564 (663)
T COG0556 511 DLPEVSLVAILDADK---EGFLRSERSLIQTIGRAARN-VNGKVILYADKITD-SMQKA 564 (663)
T ss_pred CCcceeEEEEeecCc---cccccccchHHHHHHHHhhc-cCCeEEEEchhhhH-HHHHH
Confidence 788999999988984 46655433333332221111 14578888777765 44433
No 412
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=59.73 E-value=14 Score=38.67 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
...+++||||||.|... -...+...+..-+. +..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~------~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPK------NTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCC------CeEEEEEcC
Confidence 67889999999999762 23334444444333 455555554
No 413
>PRK06904 replicative DNA helicase; Validated
Probab=59.62 E-value=30 Score=39.01 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=15.4
Q ss_pred Cc-eEeeecCCCCccceeehhhHH
Q psy8712 40 GD-VLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~d-vl~~a~TGsGKT~af~lp~l~ 62 (651)
+| ++++|.||.||| +|++-+..
T Consensus 221 G~LiiIaarPg~GKT-afalnia~ 243 (472)
T PRK06904 221 SDLIIVAARPSMGKT-TFAMNLCE 243 (472)
T ss_pred CcEEEEEeCCCCChH-HHHHHHHH
Confidence 44 566899999999 46655544
No 414
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=59.51 E-value=46 Score=38.98 Aligned_cols=55 Identities=4% Similarity=-0.090 Sum_probs=40.5
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKK 309 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~ 309 (651)
++=.++..+-|-|||.+...+++..-.. .+.+++|.+|...-+.++++.++.+..
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3446677889999999987655322111 357899999999999998888777765
No 415
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=59.48 E-value=4.2 Score=37.12 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=12.2
Q ss_pred ceEeeecCCCCcc
Q psy8712 41 DVLMAAETGSGKT 53 (651)
Q Consensus 41 dvl~~a~TGsGKT 53 (651)
+|++.+|+|+|||
T Consensus 1 ~vlL~G~~G~GKt 13 (139)
T PF07728_consen 1 PVLLVGPPGTGKT 13 (139)
T ss_dssp EEEEEESSSSSHH
T ss_pred CEEEECCCCCCHH
Confidence 5899999999999
No 416
>KOG1123|consensus
Probab=59.34 E-value=3.6 Score=45.53 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=45.0
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCC-CChhhhhhhcCccccCCC------ceEEEEeeeCCccccccc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLP-DDKANYVHRIGRVGRAER------MGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP-~s~~~YihRiGR~GR~g~------~G~ai~lv~~~de~~~~~ 526 (651)
.+..+.-..+.-.-||+|..+++|+..-- .|-..=.||.||.-|+.+ ...-++||+.+....+|.
T Consensus 589 ~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 589 KVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred ccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 33334444455558999999999987653 356667899999998754 456788888765555554
No 417
>KOG0991|consensus
Probab=59.15 E-value=12 Score=37.94 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=20.7
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
..+-+.+|+||||.|-+ |-...+++.+..-.
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYS 141 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHc
Confidence 46788999999999875 33344555444433
No 418
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=59.12 E-value=35 Score=38.79 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=19.1
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+..++..+..|+|||.++...+
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999986655
No 419
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=59.09 E-value=19 Score=42.83 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=16.1
Q ss_pred CCCeEEEecCCCCceeeeec
Q psy8712 251 PKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~ 270 (651)
..+.+..+..|+|||..+..
T Consensus 52 ~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34688999999999997653
No 420
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=58.89 E-value=15 Score=41.50 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=67.9
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV 333 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~ 333 (651)
.....+-+-|||..+...+....-... ..+-...|++|+.+-+.+.++.++......+ +++..+
T Consensus 89 ~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~--~l~~~~------------- 152 (546)
T COG4626 89 AFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPARDMVKRDD--DLRDLC------------- 152 (546)
T ss_pred EEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHHHHHHHhCc--chhhhh-------------
Confidence 344555667888765422211111111 4556889999999999999998887765432 111110
Q ss_pred hccCCcEEEECchhhH---HHHh--CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 334 LSSGVDIVVGTPGRME---DLIS--GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 334 L~~~~dIlV~TP~rL~---~ll~--~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.-..+-...+-.... ..+. .+..+-.+..+.|+||.|..-+.+ ..+..+..-+-.. .+.+++..|.
T Consensus 153 -~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ar----~~~l~~~ITT 223 (546)
T COG4626 153 -NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLGAR----PEGLVVYITT 223 (546)
T ss_pred -ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhccC----cCceEEEEec
Confidence 111222222222111 1121 234445567799999999876542 3344444443321 1356666655
No 421
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=58.52 E-value=38 Score=37.76 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=19.4
Q ss_pred CCCCCeEEEecCCCCceeeeeccc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+|..++.++..|+|||+++...+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 356778889999999999876554
No 422
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=58.19 E-value=5.3 Score=43.26 Aligned_cols=43 Identities=16% Similarity=-0.026 Sum_probs=32.9
Q ss_pred cCcchhhccc-cccccccCCCCCCCCCCCCeEEEecCCCCceeee
Q psy8712 225 AFYPAVVLKN-AEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHS 268 (651)
Q Consensus 225 ~~~p~~~~k~-~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~ 268 (651)
.+.|+++.|- .+..-||... ....+|.....-+..|+|||..+
T Consensus 122 ~~~p~f~dk~~~hi~kn~l~~-~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 122 YIAPAFMDKVAVHIAKNFLAL-PNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred ccCHHHHHHHHHHHHhhhhhc-cCCCCCeEEEeeCCCCCCHHHHH
Confidence 4566667666 4777777765 44678999999999999999963
No 423
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=58.09 E-value=8 Score=39.55 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=23.3
Q ss_pred CCcHHHHhhHHhHh----c-CCceEeeecCCCCcc
Q psy8712 24 LPTDVQAEAIPLIL----G-GGDVLMAAETGSGKT 53 (651)
Q Consensus 24 ~pt~iQ~~aip~il----~-g~dvl~~a~TGsGKT 53 (651)
-+++.+.+++..+. . .+-+++.+|+|+|||
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKT 57 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKT 57 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 56777788877654 2 346899999999999
No 424
>PF12846 AAA_10: AAA-like domain
Probab=58.05 E-value=5.2 Score=41.27 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=18.7
Q ss_pred CceEeeecCCCCccceeehhhHHHHHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
+++++.|+||||||.+.. -++.....
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~ 27 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR 27 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH
Confidence 578999999999995554 55544443
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.92 E-value=65 Score=35.32 Aligned_cols=25 Identities=0% Similarity=-0.194 Sum_probs=19.1
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+++.+..++.+|+|||+.....+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456778889999999999765543
No 426
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.58 E-value=5 Score=35.49 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=11.2
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++.+++|||||
T Consensus 2 I~I~G~~gsGKS 13 (121)
T PF13207_consen 2 IIISGPPGSGKS 13 (121)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 688999999999
No 427
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.52 E-value=20 Score=40.92 Aligned_cols=39 Identities=18% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+-+++||||+|.|....+ ..+.+.+...|. ...+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~------~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPE------HVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCC------CEEEEEEe
Confidence 4678999999998876433 234445555444 46666655
No 428
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=57.06 E-value=14 Score=40.38 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=68.5
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH-HHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE-LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre-La~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
.+..+..|||||.+....+...... ..++.+++++-||.. |..-++..++.....+. +....-....+. .+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~--~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g---~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAI--NKKQQNILAARKVQNSIRDSVFKDIENLLSIEG---INYEFKKSKSSM--EI- 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHh--cCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcC---ChhheeecCCcc--EE-
Confidence 6788999999999877655111110 014568899989976 66667777665443322 111000000000 00
Q ss_pred Hhcc-CCcEEEECc-hhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 333 VLSS-GVDIVVGTP-GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 333 ~L~~-~~dIlV~TP-~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.+.. +..|++..- ....+ ++ ....+.++.+|||..+-.. .+..++.++... . ..+.+++|.|...
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~--~--~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRET--G--GKKFIIFSSNPES 142 (396)
T ss_pred EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhcc--C--CccEEEEEcCcCC
Confidence 0111 233444332 11111 11 1233689999999987432 455555555421 1 1224677777653
No 429
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=57.03 E-value=22 Score=40.63 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
...+++||||||.|.... ...+.+.+...|. ...+|+++
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~------~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPS------YVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCC------ceEEEEEE
Confidence 567899999999986533 2345555555554 46666655
No 430
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.82 E-value=9.8 Score=43.22 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=30.5
Q ss_pred cccCCCCHHHHHHHHH-cCC-CCCcHHHHhhHH------------hHhcCCceEeeecCCCCcccee
Q psy8712 4 FEEMGVLPEIGKAVEE-MDW-LLPTDVQAEAIP------------LILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 4 f~~l~l~~~l~~~l~~-~~~-~~pt~iQ~~aip------------~il~g~dvl~~a~TGsGKT~af 56 (651)
..++|+++++++.|-+ +.- ..+......... .+-.|+-+++.+|||+|||...
T Consensus 301 L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 301 MDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred HHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHH
Confidence 3567888888888843 211 111111111111 1235678889999999999443
No 431
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=56.77 E-value=5.2 Score=36.46 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=11.3
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
|++++++|||||
T Consensus 2 ii~~G~pgsGKS 13 (143)
T PF13671_consen 2 IILCGPPGSGKS 13 (143)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 432
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=56.70 E-value=4.9 Score=42.38 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=11.8
Q ss_pred ceEeeecCCCCcc
Q psy8712 41 DVLMAAETGSGKT 53 (651)
Q Consensus 41 dvl~~a~TGsGKT 53 (651)
=+++.+|||||||
T Consensus 6 ii~I~GpTasGKS 18 (300)
T PRK14729 6 IVFIFGPTAVGKS 18 (300)
T ss_pred EEEEECCCccCHH
Confidence 3789999999999
No 433
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=56.61 E-value=8.1 Score=38.33 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.4
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.++.+++.+|+|+|||
T Consensus 37 ~~~~lll~G~~G~GKT 52 (226)
T TIGR03420 37 GDRFLYLWGESGSGKS 52 (226)
T ss_pred CCCeEEEECCCCCCHH
Confidence 3578999999999999
No 434
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.52 E-value=31 Score=39.95 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=24.9
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+.+++||||+|.|....+ ..+.+++...|. ...+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~------~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAF-NALLKTLEEPPP------HVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHHHHcCCC------CeEEEEEe
Confidence 5678999999998865433 345555555444 35555544
No 435
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.38 E-value=23 Score=39.18 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=17.5
Q ss_pred eeEEEEeeccChHHHHHHHHHhc
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
..++++|||.....+.+....|-
T Consensus 302 ~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 302 KHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred eEEEEEcCCCCHHHHHHHHHHhc
Confidence 46788999987767777777664
No 436
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=55.99 E-value=35 Score=41.19 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
...+||.+|++.-+.++++.++.... .++.+..++|+.+..++...+.. ...|||+|. +....+++
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAErsLtI 281 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVA----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAETSLTI 281 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhcc----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHHhcccc
Confidence 45799999999999999998876321 13888899999998888777653 368999995 55566778
Q ss_pred CCcceEe
Q psy8712 360 THCRFFV 366 (651)
Q Consensus 360 ~~l~~lV 366 (651)
.+|++||
T Consensus 282 p~V~~VI 288 (812)
T PRK11664 282 EGIRLVV 288 (812)
T ss_pred cCceEEE
Confidence 8888665
No 437
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=55.96 E-value=23 Score=37.44 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=24.1
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
..-+++||||||.|-... ...+.+.+...|. ..-+++.+
T Consensus 92 ~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~------~t~~il~~ 130 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPK------GVFIILLC 130 (313)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCC------CeEEEEEe
Confidence 577899999999986532 3344455554443 35555544
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.70 E-value=37 Score=38.29 Aligned_cols=23 Identities=0% Similarity=-0.109 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+.-+..++.+|.|||++.....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHH
Confidence 34567889999999999876654
No 439
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.67 E-value=8 Score=42.90 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=14.9
Q ss_pred cCCceEeeecCCCCccce
Q psy8712 38 GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~a 55 (651)
.|+-+++.+|||+|||..
T Consensus 220 ~~~~i~~vGptGvGKTTt 237 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTT 237 (424)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 366789999999999943
No 440
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.56 E-value=26 Score=40.70 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=18.3
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+..++..+..|+|||.++...+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999987655
No 441
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=55.54 E-value=10 Score=43.61 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=60.2
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHH-HHHHhhccCCCCCeeEEEEe---CC
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFN-QIIKFKKFITDPKIRELLII---GG 324 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~-~~~~l~~~~~~~~i~v~~l~---Gg 324 (651)
+.-+.++++..+.+|||.+....+...-- ....-+|++.||.++|....+ .+..+.+..+ .++-.+.- ..
T Consensus 31 ~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~----~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp--~l~~~~~~~~~~~ 104 (557)
T PF05876_consen 31 PSVREVVVMKSAQVGKTELLLNWIGYSID----QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP--VLRRKLSPSKSRD 104 (557)
T ss_pred cCccEEEEEEcchhhHhHHHHhhceEEEE----eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH--HHHHHhCchhhcc
Confidence 34567888999999999976655522211 222357899999999988663 4444433222 12211100 00
Q ss_pred ccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh
Q psy8712 325 VNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 325 ~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
.........+. +..|.+..-. ....+.-..++++++||+|.+-.
T Consensus 105 ~~~t~~~k~f~-gg~l~~~ga~------S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 105 SGNTILYKRFP-GGFLYLVGAN------SPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred cCCchhheecC-CCEEEEEeCC------CCcccccCCcCEEEEechhhccc
Confidence 00001111111 2233333211 11234456789999999998853
No 442
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=55.54 E-value=19 Score=41.80 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=82.4
Q ss_pred CCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCc
Q psy8712 246 FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV 325 (651)
Q Consensus 246 ~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~ 325 (651)
+.+-.++-.+...+--.|||.+....++... ....+.++++.+|.+.-++.+++.+..+....-.+ -.+-.+. |.
T Consensus 249 ~~~fkqk~tVflVPRR~GKTwivv~iI~~ll---~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~-~~v~~vk-Ge 323 (738)
T PHA03368 249 VRHFRQRATVFLVPRRHGKTWFLVPLIALAL---ATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGA-SRVDHVK-GE 323 (738)
T ss_pred HHHhhccceEEEecccCCchhhHHHHHHHHH---HhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcch-hheeeec-Cc
Confidence 3344566678888888999996552221110 11246799999999999999999988865421111 1111111 21
Q ss_pred cHHHHHHHhccC--CcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 326 NVKDQMSVLSSG--VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 326 ~~~~q~~~L~~~--~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
.. .-.+.++ ..|..+|- -..+.+.-..+++||||||+.+-+. .+..++-.+... +.++|+
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~-----n~k~I~ 385 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQT-----NCKIIF 385 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhcc-----CccEEE
Confidence 11 0011222 24444431 1233455568899999999987553 345555444332 689999
Q ss_pred EeeccCh
Q psy8712 404 CSATLHD 410 (651)
Q Consensus 404 ~SATl~~ 410 (651)
+|.|-+.
T Consensus 386 ISS~Ns~ 392 (738)
T PHA03368 386 VSSTNTG 392 (738)
T ss_pred EecCCCC
Confidence 9988655
No 443
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=55.49 E-value=21 Score=41.10 Aligned_cols=22 Identities=5% Similarity=0.003 Sum_probs=17.8
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+.-++..+..|+|||.++-..+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4458899999999999876554
No 444
>KOG1015|consensus
Probab=55.47 E-value=54 Score=39.59 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCC-CeeEEEEeCCccHHHHHHHhcc---
Q psy8712 261 PKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDP-KIRELLIIGGVNVKDQMSVLSS--- 336 (651)
Q Consensus 261 gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~-~i~v~~l~Gg~~~~~q~~~L~~--- 336 (651)
|-|||.-.+..+........ ..-.+|||++|..- +....+.|+++...+... .+.|..+..=.........|.+
T Consensus 706 GLGKTlQVvtflhTvL~c~k-lg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~ 783 (1567)
T KOG1015|consen 706 GLGKTLQVVTFLHTVLLCDK-LGFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQE 783 (1567)
T ss_pred cccceehhhHHHHHHHHhhc-cCCceEEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHh
Q ss_pred CCcEEEECchhhHHHHhCCCcccCC-------------cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTH-------------CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~-------------l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
.--|.|.--..+..+-........+ .++||.||+|.|-.. -..+...+..+.. +++|++
T Consensus 784 ~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irt------kRRI~L 855 (1567)
T KOG1015|consen 784 DGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRT------KRRIIL 855 (1567)
T ss_pred cCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHh------heeEEe
Q ss_pred EeeccChHHHHHH
Q psy8712 404 CSATLHDFDVKKM 416 (651)
Q Consensus 404 ~SATl~~~~v~~l 416 (651)
...-+.+ ++...
T Consensus 856 TGTPLQN-NLmEY 867 (1567)
T KOG1015|consen 856 TGTPLQN-NLMEY 867 (1567)
T ss_pred ecCchhh-hhHHH
No 445
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=55.35 E-value=55 Score=35.00 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=41.5
Q ss_pred ceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccccc
Q psy8712 41 DVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 41 dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
||++.||||||||.+|++|++..+.. ....+.++++|+++|..+..+....+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKEL 52 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHH
Confidence 79999999999999999999976432 11346888999999998887766554
No 446
>KOG0326|consensus
Probab=55.24 E-value=3.9 Score=42.79 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=33.3
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeec
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
|..||+.||.+|.+++.=|. ..+|+++.+..|+|||.++..
T Consensus 101 fe~G~ekPSPiQeesIPiaL-------------------tGrdiLaRaKNGTGKT~a~~I 141 (459)
T KOG0326|consen 101 FEKGFEKPSPIQEESIPIAL-------------------TGRDILARAKNGTGKTAAYCI 141 (459)
T ss_pred HHhccCCCCCccccccceee-------------------cchhhhhhccCCCCCccceec
Confidence 68899999999998774332 356899999999999998664
No 447
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=54.79 E-value=5.8 Score=39.10 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=11.9
Q ss_pred eEeeecCCCCccce
Q psy8712 42 VLMAAETGSGKTGA 55 (651)
Q Consensus 42 vl~~a~TGsGKT~a 55 (651)
+++.+|||+|||-+
T Consensus 4 i~lvGptGvGKTTt 17 (196)
T PF00448_consen 4 IALVGPTGVGKTTT 17 (196)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCchHhH
Confidence 67899999999943
No 448
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=54.70 E-value=21 Score=38.50 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=18.7
Q ss_pred HHhHhcCCc--eEeeecCCCCccceee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
++.++.|.+ |++.++||||||.+..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~ 107 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMM 107 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEec
Confidence 344567765 6777999999998774
No 449
>KOG0058|consensus
Probab=54.68 E-value=23 Score=41.38 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=27.9
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~ 391 (651)
+++-+.||+|||=.-+|..-...+++.+.++.+
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 578899999999999987777778888877766
No 450
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.52 E-value=5.6 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.0
Q ss_pred cceEeeccchhhhhcc
Q psy8712 362 CRFFVLDEADGLLKQG 377 (651)
Q Consensus 362 l~~lViDEaD~ll~~g 377 (651)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 3689999999998754
No 451
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=54.49 E-value=28 Score=37.03 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
...+++||||||.|.... ...+.++++.-|. +..+|+.|...
T Consensus 112 g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~------~~~fiL~~~~~ 153 (319)
T PRK08769 112 GIAQVVIVDPADAINRAA-CNALLKTLEEPSP------GRYLWLISAQP 153 (319)
T ss_pred CCcEEEEeccHhhhCHHH-HHHHHHHhhCCCC------CCeEEEEECCh
Confidence 467899999999996532 3334555555444 56777776543
No 452
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.47 E-value=2.9 Score=43.08 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCcc
Q psy8712 11 PEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 11 ~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT 53 (651)
.++.++|...|....-+.--+.+--+..|.-+++.|+||+|||
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT 44 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKT 44 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHH
Confidence 4677777765554433333333333445677899999999999
No 453
>KOG0742|consensus
Probab=54.02 E-value=21 Score=38.94 Aligned_cols=19 Identities=5% Similarity=0.030 Sum_probs=15.9
Q ss_pred CCCCCeEEEecCCCCceee
Q psy8712 249 EPPKDYIAVCNAPKQNVKH 267 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~ 267 (651)
.|-+|++--++-|+|||..
T Consensus 382 apfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMF 400 (630)
T ss_pred chhhheeeeCCCCCCchHH
Confidence 4668888889999999985
No 454
>PRK09694 helicase Cas3; Provisional
Probab=53.97 E-value=50 Score=40.12 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=51.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH-------HHHh-ccC----CcEEEECchhhH
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ-------MSVL-SSG----VDIVVGTPGRME 349 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q-------~~~L-~~~----~dIlV~TP~rL~ 349 (651)
..+.++||+++|.+-|+++++.+++... ....+.++.+.....+. .+.+ +++ ..|||+|.
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~----~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ---- 629 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNN----TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ---- 629 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCC----CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc----
Confidence 3466899999999999999999986431 12577788887654332 1222 222 36999993
Q ss_pred HHHhCCCcccCCcceEeeccc
Q psy8712 350 DLISGGHLSLTHCRFFVLDEA 370 (651)
Q Consensus 350 ~ll~~~~l~l~~l~~lViDEa 370 (651)
+-...+++ +++++|.|-|
T Consensus 630 --ViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 630 --VVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred --chhheeec-CCCeEEECCC
Confidence 33344555 4678888754
No 455
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.89 E-value=24 Score=41.11 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=17.6
Q ss_pred CCeEEEecCCCCceeeeeccc
Q psy8712 252 KDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..++..+..|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 357899999999999987665
No 456
>PRK13531 regulatory ATPase RavA; Provisional
Probab=53.78 E-value=7.3 Score=43.69 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.6
Q ss_pred hHhcCCceEeeecCCCCccc
Q psy8712 35 LILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 35 ~il~g~dvl~~a~TGsGKT~ 54 (651)
.++.|++|++.+|+|+|||.
T Consensus 35 aalag~hVLL~GpPGTGKT~ 54 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSL 54 (498)
T ss_pred HHccCCCEEEECCCChhHHH
Confidence 45689999999999999994
No 457
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=53.63 E-value=10 Score=40.28 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=19.1
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.++.|.| |++.++||||||.+.
T Consensus 68 ~v~~~~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 68 IVDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHHcCccceEEEeCCCCCCceEEe
Confidence 3455577765 678899999999885
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=53.56 E-value=6.3 Score=34.88 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=11.2
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
|++.+++|||||
T Consensus 1 I~i~G~~GsGKt 12 (129)
T PF13238_consen 1 IGISGIPGSGKT 12 (129)
T ss_dssp EEEEESTTSSHH
T ss_pred CEEECCCCCCHH
Confidence 678999999999
No 459
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=53.55 E-value=63 Score=35.50 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=10.0
Q ss_pred eEeeccchhhhh
Q psy8712 364 FFVLDEADGLLK 375 (651)
Q Consensus 364 ~lViDEaD~ll~ 375 (651)
+|++||.|++..
T Consensus 259 lL~iDsItR~ar 270 (416)
T PRK09376 259 VILLDSITRLAR 270 (416)
T ss_pred EEEEEChHHHHH
Confidence 788999998754
No 460
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=53.11 E-value=77 Score=32.89 Aligned_cols=37 Identities=5% Similarity=-0.008 Sum_probs=23.4
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEe
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIE 291 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~ 291 (651)
++.-+..++..|+|||+.+...+.... ..+.+++++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 445677789999999998665542221 2244566655
No 461
>PHA02653 RNA helicase NPH-II; Provisional
Probab=52.98 E-value=41 Score=39.65 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH-HHHh-c-cCCcEEEECchhhHHHHhCCCcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ-MSVL-S-SGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q-~~~L-~-~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+..+||.+|+++-+..+.+.+++.. +++.+..++|+.+..++ .+.+ + ....|||+|. +....+++.
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~-----~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd------IAERGIDIp 463 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL-----PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP------YLESSVTIR 463 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc-----CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC------hhhcccccc
Confidence 3479999999998888877776543 13788899998876533 3444 3 3479999995 556678888
Q ss_pred CcceEe
Q psy8712 361 HCRFFV 366 (651)
Q Consensus 361 ~l~~lV 366 (651)
++.+||
T Consensus 464 ~V~~VI 469 (675)
T PHA02653 464 NATHVY 469 (675)
T ss_pred CeeEEE
Confidence 998776
No 462
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=52.93 E-value=13 Score=39.76 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHhHhcCCc--eEeeecCCCCccceeehh-------hHHHHHHHHHHhh
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFCLP-------IIQIVCETLKEIQ 72 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~lp-------~l~~~~~~~~~~~ 72 (651)
|..++.|.| |++.++||||||.+..=+ ++.++.+.+....
T Consensus 67 v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~ 115 (335)
T PF00225_consen 67 VDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQI 115 (335)
T ss_dssp HHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHH
T ss_pred HHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHHhhhh
Confidence 445678876 566689999999776665 6666666555433
No 463
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=52.43 E-value=5.9 Score=40.35 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=16.5
Q ss_pred ceEeeecCCCCccceeehhhHH
Q psy8712 41 DVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 41 dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.++++|++||||| .|++-+|.
T Consensus 15 r~viIG~sGSGKT-~li~~lL~ 35 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-TLIKSLLY 35 (241)
T ss_pred eEEEECCCCCCHH-HHHHHHHH
Confidence 5789999999999 56555554
No 464
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=52.39 E-value=11 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHhHhcCCc--eEeeecCCCCccceee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
++.++.|.+ +++.++||||||.+..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~ 107 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQ 107 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEec
Confidence 344567754 6777999999998764
No 465
>PRK13767 ATP-dependent helicase; Provisional
Probab=52.32 E-value=44 Score=40.81 Aligned_cols=86 Identities=31% Similarity=0.295 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCc
Q psy8712 9 VLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPT 88 (651)
Q Consensus 9 l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 88 (651)
++|.+.+.+++ +|..|||+|++|||.++.|+|++++||||||||+||++|+++.+.... ...+...+..+++++|+
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~---~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLG---REGELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhc---cccCCCCCeEEEEEcCH
Confidence 56888888776 799999999999999999999999999999999999999999876421 11111234578999999
Q ss_pred eeeecccccc
Q psy8712 89 WILSVWDRDT 98 (651)
Q Consensus 89 ~~l~~~~~~~ 98 (651)
++|+.+....
T Consensus 94 raLa~di~~~ 103 (876)
T PRK13767 94 RALNNDIHRN 103 (876)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 466
>KOG0701|consensus
Probab=52.18 E-value=6.9 Score=49.63 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=116.2
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
.........++-|++++.........+.......-.++.+.|+-.+..+.......-.. .+.....++.. .
T Consensus 135 ~~~v~~~~~t~~~~~vm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~---~ 205 (1606)
T KOG0701|consen 135 SDLVSLVRYTSNPFEVMVCCLDAEYGPLLINKDKLICVFLIPDCIVITFQKQYTLLKVL------FKKGPWCSVKW---I 205 (1606)
T ss_pred ccceEeeeccCCCeEEeeehhhhhhhhhhccccceeEEeccCcceeeeccccchhhhhh------cccCcchhhHH---H
Confidence 34566666777777777766554444444444455556666765555433322211110 22222233322 2
Q ss_pred HHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 331 MSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 331 ~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
....++.+.++.++|..++. ......+..-....+++|.+..+...+.+.+. .++-+.+..+ ..+.-++.-|..+
T Consensus 206 ~~~~~e~~~~~~~~~~~~~~-~~e~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~---~~~~~l~~~~~~~ 280 (1606)
T KOG0701|consen 206 AQDVRELPKVIAGNPAELHY-CEEVFSDSELRFLMSIPRLLERLRDSKHEYIH-QFEVLRKYEP---HDVFRLIHESVCP 280 (1606)
T ss_pred HHHHhhcceeecCCHHHhhh-hhhhcCcHHHHHHHhHHHHHHHhhhcchhhhc-ccceeeeecc---cccceeehhhcCc
Confidence 23345567788889887765 22222222233456677777766544433333 2222222111 1222233344443
Q ss_pred HHHHHHHHHhccCCeEEEccCCCC-----------ccCceEEEEEEeCc-----------chHHHHHHHhhccccceeec
Q psy8712 411 FDVKKMAERLMYFPTWVDLKGEDA-----------VPETVHHVVVKIDP-----------QQDETWGRLRSHIQTDGVHA 468 (651)
Q Consensus 411 ~~v~~l~~~~l~~p~~i~~~~~~~-----------~~~~i~~~~~~~~~-----------~~~~~~~~l~~~~~~~~l~~ 468 (651)
...++...+...--..+.+..... ....+..+.-.+-. ...+.....+.......+.+
T Consensus 281 ~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~ 360 (1606)
T KOG0701|consen 281 LVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIA 360 (1606)
T ss_pred hhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHH
Confidence 111111111110001111111100 00011111100000 01122222344445556666
Q ss_pred cccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 469 RDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
|..+.-|+|++.++.|+.++.|.....|+|+.||+-+..
T Consensus 361 ~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 361 TSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred HHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 777777999999999999999999999999999986543
No 467
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=52.17 E-value=60 Score=40.38 Aligned_cols=76 Identities=22% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccC
Q psy8712 9 VLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISP 87 (651)
Q Consensus 9 l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p 87 (651)
-...+...++. +||..++|+|.++||.++.|+|+++.+|||+|||+||+||+|.. ...+++++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------------~GiTLVISP 508 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------------PGITLVISP 508 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------CCcEEEEeC
Confidence 34456666654 89999999999999999999999999999999999999999852 236899999
Q ss_pred ceeeeccccccc
Q psy8712 88 TWILSVWDRDTA 99 (651)
Q Consensus 88 ~~~l~~~~~~~~ 99 (651)
+++|+.++....
T Consensus 509 LiSLmqDQV~~L 520 (1195)
T PLN03137 509 LVSLIQDQIMNL 520 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 999987654443
No 468
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=52.09 E-value=12 Score=39.66 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=19.1
Q ss_pred HHhHhcCCc--eEeeecCCCCccceee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
++.++.|.| |++.++||||||.+..
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~ 99 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTML 99 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEe
Confidence 445678866 5666999999998774
No 469
>PRK08939 primosomal protein DnaI; Reviewed
Probab=52.01 E-value=58 Score=34.48 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=18.9
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
...+++..++.|+|||..+...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia 177 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIA 177 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999876544
No 470
>KOG1513|consensus
Probab=51.73 E-value=21 Score=41.88 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=80.0
Q ss_pred CCCCeEEEecCC--CCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCC---
Q psy8712 250 PPKDYIAVCNAP--KQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGG--- 324 (651)
Q Consensus 250 ~~~~~i~~~~~g--sGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg--- 324 (651)
.--+|+.-.++| -|+|++.++.-.++ ....++|.++-+..|--...+.+..++.. +|.|..+..-
T Consensus 288 ~RaGfLiGDGAGVGKGRTvAgiIfeNyL------kGRKrAlW~SVSsDLKfDAERDL~DigA~----~I~V~alnK~KYa 357 (1300)
T KOG1513|consen 288 QRAGFLIGDGAGVGKGRTVAGIIFENYL------KGRKRALWFSVSSDLKFDAERDLRDIGAT----GIAVHALNKFKYA 357 (1300)
T ss_pred ccceeeeccCcccCCCceeEEEEehhhh------cccceeEEEEeccccccchhhchhhcCCC----Cccceehhhcccc
Confidence 334566655555 55677666544332 34568999998888877766666666542 3555554321
Q ss_pred -ccHHHHHHHhccCCcEEEECchhhHHHHh--CCCcc--c--------CC-cceEeeccchhhhh---------ccchHH
Q psy8712 325 -VNVKDQMSVLSSGVDIVVGTPGRMEDLIS--GGHLS--L--------TH-CRFFVLDEADGLLK---------QGYGNL 381 (651)
Q Consensus 325 -~~~~~q~~~L~~~~dIlV~TP~rL~~ll~--~~~l~--l--------~~-l~~lViDEaD~ll~---------~gf~~~ 381 (651)
.+.++. ... .--|+.+|--.|.---. .++.. + .+ =..||+||||..-+ ..-+..
T Consensus 358 kIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~t 434 (1300)
T KOG1513|consen 358 KISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKT 434 (1300)
T ss_pred ccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHh
Confidence 111110 011 12588888655533211 11110 1 11 24899999997543 113556
Q ss_pred HHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 382 IDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 382 i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
+..+-+.||. .+++..|||=
T Consensus 435 VLdLQk~LP~-------ARVVYASATG 454 (1300)
T KOG1513|consen 435 VLDLQKKLPN-------ARVVYASATG 454 (1300)
T ss_pred HHHHHHhCCC-------ceEEEeeccC
Confidence 7888888886 7999999993
No 471
>PRK09183 transposase/IS protein; Provisional
Probab=51.63 E-value=54 Score=33.73 Aligned_cols=22 Identities=0% Similarity=-0.053 Sum_probs=18.2
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
...+++..+++|+|||..+...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHH
Confidence 4568999999999999987643
No 472
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=51.58 E-value=34 Score=36.56 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
..-+++||||||.|-... ...+.+.++..|. ...+++.|.
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~------~~~~Il~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSG------GTTAILLTE 148 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCC------CceEEEEeC
Confidence 566899999999986542 3345555555444 456666443
No 473
>KOG0336|consensus
Probab=51.54 E-value=6.9 Score=42.33 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=30.7
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
-.||+.|+.+|.|+-. + .-...|.|+++|+|+|||.++++.
T Consensus 237 K~GFqKPtPIqSQaWP------------------I-~LQG~DliGVAQTgtgKtL~~L~p 277 (629)
T KOG0336|consen 237 KTGFQKPTPIQSQAWP------------------I-LLQGIDLIGVAQTGTGKTLAFLLP 277 (629)
T ss_pred hccCCCCCcchhcccc------------------e-eecCcceEEEEecCCCcCHHHhcc
Confidence 3567778888888552 1 113568999999999999998864
No 474
>PHA00729 NTP-binding motif containing protein
Probab=51.45 E-value=38 Score=34.17 Aligned_cols=111 Identities=5% Similarity=0.001 Sum_probs=0.0
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
+++..+..|+|||..+. .|+..+...+..+.. ...
T Consensus 19 nIlItG~pGvGKT~LA~-------------------------aLa~~l~~~l~~l~~--------------------~~~ 53 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL-------------------------KVARDVFWKLNNLST--------------------KDD 53 (226)
T ss_pred EEEEECCCCCCHHHHHH-------------------------HHHHHHHhhcccccc--------------------hhh
Q ss_pred HhccCCcEEEECchhhHHHHhCCCcccCCcceEeecc---------chhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDE---------ADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDE---------aD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
....+-..++.+...+.+.+....-...++.+||||| .|.-.-..|......+..+ .+++.
T Consensus 54 ~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR----------~~l~i 123 (226)
T PHA00729 54 AWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTR----------VSAVI 123 (226)
T ss_pred HHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhh----------CcEEE
Q ss_pred EeeccChHHHHHHHHH
Q psy8712 404 CSATLHDFDVKKMAER 419 (651)
Q Consensus 404 ~SATl~~~~v~~l~~~ 419 (651)
+...-+. ++...++.
T Consensus 124 l~~ls~e-dL~~~Lr~ 138 (226)
T PHA00729 124 FTTPSPE-DLAFYLRE 138 (226)
T ss_pred EecCCHH-HHHHHHHh
No 475
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=51.34 E-value=18 Score=43.10 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=16.8
Q ss_pred CCCCeEEEecCCCCceeeee
Q psy8712 250 PPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~ 269 (651)
.+.|.+..+..|+|||.++-
T Consensus 206 ~~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 45678999999999999754
No 476
>KOG0346|consensus
Probab=51.31 E-value=6.6 Score=42.92 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=32.3
Q ss_pred cccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 213 LAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 213 ~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.||+.|..+|..+| |....- .|+++.+.||||||.++.+.+
T Consensus 37 lG~ekpTlIQs~aI------------------plaLEg-KDvvarArTGSGKT~AYliPl 77 (569)
T KOG0346|consen 37 LGWEKPTLIQSSAI------------------PLALEG-KDVVARARTGSGKTAAYLIPL 77 (569)
T ss_pred hCcCCcchhhhccc------------------chhhcC-cceeeeeccCCCchHHHHHHH
Confidence 47899999999988 333333 399999999999999877543
No 477
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=51.13 E-value=11 Score=34.52 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=15.8
Q ss_pred hHhcCCceEeeecCCCCccc
Q psy8712 35 LILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 35 ~il~g~dvl~~a~TGsGKT~ 54 (651)
+......|++.+|+||||+.
T Consensus 17 ~a~~~~pvli~GE~GtGK~~ 36 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSL 36 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHH
T ss_pred HhCCCCcEEEEcCCCCCHHH
Confidence 34466899999999999994
No 478
>PHA02244 ATPase-like protein
Probab=50.89 E-value=12 Score=40.56 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.6
Q ss_pred hHhcCCceEeeecCCCCcc
Q psy8712 35 LILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 35 ~il~g~dvl~~a~TGsGKT 53 (651)
.+-.+.+|++.+|||+|||
T Consensus 115 ~l~~~~PVLL~GppGtGKT 133 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKN 133 (383)
T ss_pred HHhcCCCEEEECCCCCCHH
Confidence 3447889999999999999
No 479
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=50.75 E-value=32 Score=36.71 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=26.4
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeec
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SAT 407 (651)
...+.+|||+||.|-... ...+.+++..-|. +.-+++.|..
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~------~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRP------NTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCC------CeEEEEEECC
Confidence 567899999999997542 3345555555444 4666665544
No 480
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=50.54 E-value=11 Score=37.25 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeec
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SAT 407 (651)
....++|+||+|.-+|......+..++..+.+ +.|+++.|-.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~------~~Q~ii~Th~ 198 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSK------QSQFIITTHN 198 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTT------TSEEEEE-S-
T ss_pred cccccccccccccccccccccccccccccccc------cccccccccc
Confidence 44569999999999988777778878877765 5899988643
No 481
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.35 E-value=23 Score=38.82 Aligned_cols=101 Identities=12% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHH----HHHHHHHHhhccCCCCCeeEEEEeCC
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAE----QTFNQIIKFKKFITDPKIRELLIIGG 324 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~----Qi~~~~~~l~~~~~~~~i~v~~l~Gg 324 (651)
++|.+++..+..|+|||..+-... ......++-+...+|+. .....++.+.....
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia---------~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~------------ 221 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVA---------HETNATFIRVVGSELVQKFIGEGARLVRELFELAR------------ 221 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHH---------HHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH------------
Q ss_pred ccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhh----------hccchHHHHHHHhcCCCccC
Q psy8712 325 VNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL----------KQGYGNLIDRMHKQIPKITS 394 (651)
Q Consensus 325 ~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll----------~~gf~~~i~~il~~lp~~~~ 394 (651)
-..-.+|+|||+|.+. +......+..++..+.....
T Consensus 222 ----------------------------------~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 222 ----------------------------------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred ----------------------------------hcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Q ss_pred CCCceeEEEEe
Q psy8712 395 DGKRLQMIVCS 405 (651)
Q Consensus 395 ~~~~~Q~l~~S 405 (651)
.+ +..+|+.|
T Consensus 268 ~~-~v~VI~aT 277 (389)
T PRK03992 268 RG-NVKIIAAT 277 (389)
T ss_pred CC-CEEEEEec
No 482
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=50.32 E-value=70 Score=35.52 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=17.2
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+|.-+..++..|+|||+.+...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34556778889999998876544
No 483
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=50.07 E-value=8.1 Score=45.13 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=19.2
Q ss_pred CCceEeeecCCCCccceeehhhHHHH
Q psy8712 39 GGDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
.++++|.|+||||||..+.+=+.|.+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i 201 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDI 201 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999976644444433
No 484
>KOG0334|consensus
Probab=50.07 E-value=9.1 Score=46.00 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=31.3
Q ss_pred cccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 213 LAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 213 ~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
++|+.|..+|.+++. +|- ..+|.|+++.+|+|||.+|.+.+
T Consensus 383 l~y~k~~~IQ~qAiP-~Im------------------sGrdvIgvakTgSGKT~af~LPm 423 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIP-AIM------------------SGRDVIGVAKTGSGKTLAFLLPM 423 (997)
T ss_pred hcCCCCcchhhhhcc-hhc------------------cCcceEEeeccCCccchhhhcch
Confidence 346688888888772 222 45799999999999999987655
No 485
>PLN02796 D-glycerate 3-kinase
Probab=49.86 E-value=19 Score=38.62 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.7
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+-+++++|||||.
T Consensus 103 IGI~G~sGSGKST 115 (347)
T PLN02796 103 IGISAPQGCGKTT 115 (347)
T ss_pred EEEECCCCCcHHH
Confidence 7889999999993
No 486
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=49.83 E-value=77 Score=35.86 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCc
Q psy8712 246 FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV 325 (651)
Q Consensus 246 ~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~ 325 (651)
...++|++++..++.|+|||. ||.-+...+
T Consensus 83 ~g~~~~~giLL~GppGtGKT~-----------------------------la~alA~~~--------------------- 112 (495)
T TIGR01241 83 LGAKIPKGVLLVGPPGTGKTL-----------------------------LAKAVAGEA--------------------- 112 (495)
T ss_pred cCCCCCCcEEEECCCCCCHHH-----------------------------HHHHHHHHc---------------------
Q ss_pred cHHHHHHHhccCCcEEEECchhhHHHHhCCCcc----------cCCcceEeeccchhhh----------hccchHHHHHH
Q psy8712 326 NVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS----------LTHCRFFVLDEADGLL----------KQGYGNLIDRM 385 (651)
Q Consensus 326 ~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~----------l~~l~~lViDEaD~ll----------~~gf~~~i~~i 385 (651)
+..++..+...+.......... -....+|+|||+|.+. +......+..+
T Consensus 113 -----------~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 181 (495)
T TIGR01241 113 -----------GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 181 (495)
T ss_pred -----------CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHH
Q ss_pred HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC
Q psy8712 386 HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433 (651)
Q Consensus 386 l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~ 433 (651)
+..+...... ..++++.||=.+..+..-..+--+-...+.+...+
T Consensus 182 L~~~d~~~~~---~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 182 LVEMDGFGTN---TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred HhhhccccCC---CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
No 487
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=49.69 E-value=39 Score=41.10 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=17.5
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
..+.|.+..+..|.|||.++-
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHH
Confidence 456788899999999999764
No 488
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=49.65 E-value=13 Score=39.69 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=18.4
Q ss_pred HHhHhcCCc--eEeeecCCCCccceee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
+..++.|.+ |++.++||||||.+..
T Consensus 77 v~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 77 IPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHHhCCCceEEEeccCCCCCCceEec
Confidence 444567755 6677999999997765
No 489
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=49.58 E-value=33 Score=36.37 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=20.1
Q ss_pred hhHHhHhcCCc--eEeeecCCCCccceeeh
Q psy8712 31 EAIPLILGGGD--VLMAAETGSGKTGAFCL 58 (651)
Q Consensus 31 ~aip~il~g~d--vl~~a~TGsGKT~af~l 58 (651)
..+..++.|.| +++.++||||||....=
T Consensus 69 ~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G 98 (328)
T cd00106 69 PLVESVLEGYNGTIFAYGQTGSGKTYTMFG 98 (328)
T ss_pred HHHHHHhCCCceeEEEecCCCCCCeEEecC
Confidence 34455577876 56679999999977544
No 490
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=49.55 E-value=14 Score=39.68 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=17.8
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|.+ +++.++||||||.+.
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEE
Confidence 34467765 677899999999887
No 491
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.53 E-value=8.5 Score=42.32 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=14.4
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+++.+|+|+|||.
T Consensus 179 pkgvLL~GppGTGKT~ 194 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTM 194 (398)
T ss_pred CceEEEECCCCCCHHH
Confidence 5789999999999994
No 492
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=49.41 E-value=41 Score=35.70 Aligned_cols=22 Identities=5% Similarity=-0.170 Sum_probs=17.8
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+..++..+..|.||+..+...+
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a 47 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFI 47 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5579999999999998775544
No 493
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=49.40 E-value=44 Score=38.70 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=18.0
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+.-++..+..|+|||..+...+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999876654
No 494
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.10 E-value=18 Score=39.53 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.7
Q ss_pred CCceEeeecCCCCcccee
Q psy8712 39 GGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~af 56 (651)
++-+++.+|||+|||-+-
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999543
No 495
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=48.81 E-value=14 Score=39.33 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHhHhcCCc--eEeeecCCCCccceee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
++.++.|.+ |++.++||||||.+..
T Consensus 66 v~~~l~G~n~~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 66 VRSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred HHHHHCCCceeEEeecCCCCCCceecc
Confidence 444567765 6677999999997765
No 496
>CHL00176 ftsH cell division protein; Validated
Probab=48.70 E-value=96 Score=36.40 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.3
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
..+|++++..++.|+|||..+-.
T Consensus 213 ~~~p~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 213 AKIPKGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred CCCCceEEEECCCCCCHHHHHHH
Confidence 45788999999999999997543
No 497
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=48.56 E-value=17 Score=41.46 Aligned_cols=27 Identities=4% Similarity=-0.091 Sum_probs=21.0
Q ss_pred CCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 246 FKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 246 ~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+..++.+-+...+.+|+|||+..-..+
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445677779999999999999765543
No 498
>KOG0090|consensus
Probab=48.45 E-value=12 Score=37.26 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=17.8
Q ss_pred CCceEeeecCCCCccceeeh
Q psy8712 39 GGDVLMAAETGSGKTGAFCL 58 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~af~l 58 (651)
+++|+++++++||||.-|+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~q 57 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQ 57 (238)
T ss_pred CCcEEEEecCCCCceeeeee
Confidence 47999999999999988863
No 499
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.44 E-value=1e+02 Score=34.12 Aligned_cols=58 Identities=9% Similarity=-0.002 Sum_probs=31.3
Q ss_pred CCcceEeeccchhhh-hccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 360 THCRFFVLDEADGLL-KQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 360 ~~l~~lViDEaD~ll-~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
.+.++||||=+-+.. +......+..+++..... ...--++.+|||....++.+.++.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~---~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEK---DSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCC---CCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 455678888544331 111222344444333110 0024678889999876777777766
No 500
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=48.44 E-value=9.4 Score=38.42 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=17.3
Q ss_pred cCCceEeeecCCCCccceeehhhHH
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.|.=++++|+||+||| +|++-++.
T Consensus 12 ~G~l~lI~G~~G~GKT-~~~~~~~~ 35 (242)
T cd00984 12 PGDLIIIAARPSMGKT-AFALNIAE 35 (242)
T ss_pred CCeEEEEEeCCCCCHH-HHHHHHHH
Confidence 3556888999999999 55544433
Done!