Query psy8712
Match_columns 651
No_of_seqs 371 out of 3136
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:21:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.6E-52 5.5E-57 461.2 34.4 302 1-519 55-407 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.7E-48 1.3E-52 421.9 31.2 316 1-518 14-382 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.6E-48 1.2E-52 421.6 29.3 248 284-591 105-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 2.4E-46 8.1E-51 406.9 29.8 318 2-593 40-411 (414)
5 1s2m_A Putative ATP-dependent 100.0 2.9E-45 9.9E-50 397.1 32.6 248 284-592 89-388 (400)
6 3sqw_A ATP-dependent RNA helic 100.0 1.4E-45 4.7E-50 420.3 29.6 255 284-589 95-418 (579)
7 1xti_A Probable ATP-dependent 100.0 4.8E-45 1.6E-49 393.6 32.0 253 284-594 76-383 (391)
8 3fht_A ATP-dependent RNA helic 100.0 3.5E-45 1.2E-49 397.1 29.0 247 284-591 95-402 (412)
9 3i5x_A ATP-dependent RNA helic 100.0 3E-45 1E-49 415.7 29.1 255 284-589 146-469 (563)
10 3fmp_B ATP-dependent RNA helic 100.0 1.6E-46 5.4E-51 418.1 16.6 224 284-519 162-446 (479)
11 3pey_A ATP-dependent RNA helic 100.0 2.6E-44 9E-49 387.3 30.4 221 284-518 75-355 (395)
12 1fuu_A Yeast initiation factor 100.0 1.9E-45 6.5E-50 396.9 18.9 316 2-592 21-389 (394)
13 1hv8_A Putative ATP-dependent 100.0 2.9E-43 9.9E-48 375.4 30.5 241 284-589 74-365 (367)
14 2z0m_A 337AA long hypothetical 100.0 1.6E-41 5.5E-46 358.0 29.4 219 286-518 58-322 (337)
15 3oiy_A Reverse gyrase helicase 100.0 4.7E-40 1.6E-44 358.9 20.9 221 285-516 65-362 (414)
16 3fho_A ATP-dependent RNA helic 100.0 2.7E-40 9.1E-45 370.9 19.4 222 284-519 189-470 (508)
17 2v1x_A ATP-dependent DNA helic 100.0 4.5E-39 1.6E-43 366.1 26.1 219 286-521 86-376 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 5.9E-39 2E-43 360.9 24.5 220 286-522 67-346 (523)
19 3fe2_A Probable ATP-dependent 100.0 7.7E-38 2.6E-42 317.0 22.7 214 1-433 28-241 (242)
20 1tf5_A Preprotein translocase 100.0 6.3E-38 2.1E-42 359.2 18.3 234 285-523 125-549 (844)
21 3fmo_B ATP-dependent RNA helic 100.0 2.4E-37 8.3E-42 323.8 18.9 136 284-431 162-299 (300)
22 1wrb_A DJVLGB; RNA helicase, D 100.0 7.5E-37 2.6E-41 311.6 18.8 231 1-442 22-252 (253)
23 4ddu_A Reverse gyrase; topoiso 100.0 4.4E-37 1.5E-41 370.7 19.9 197 285-491 122-388 (1104)
24 1gku_B Reverse gyrase, TOP-RG; 100.0 7.6E-37 2.6E-41 368.5 19.8 228 285-524 100-459 (1054)
25 3ber_A Probable ATP-dependent 100.0 9.6E-36 3.3E-40 303.3 23.5 205 2-430 43-248 (249)
26 3iuy_A Probable ATP-dependent 100.0 3.5E-36 1.2E-40 301.7 19.5 209 2-429 19-228 (228)
27 1q0u_A Bstdead; DEAD protein, 100.0 2.1E-36 7.1E-41 301.6 17.5 209 2-431 4-213 (219)
28 1vec_A ATP-dependent RNA helic 100.0 9.4E-36 3.2E-40 293.2 21.3 135 284-427 71-205 (206)
29 3bor_A Human initiation factor 100.0 3.2E-36 1.1E-40 304.3 18.1 206 1-430 29-235 (237)
30 2oxc_A Probable ATP-dependent 100.0 1.4E-35 4.7E-40 298.2 19.8 205 2-430 24-229 (230)
31 2pl3_A Probable ATP-dependent 100.0 6.4E-35 2.2E-39 294.0 22.9 209 2-431 25-234 (236)
32 2gxq_A Heat resistant RNA depe 100.0 4.1E-35 1.4E-39 288.7 20.3 135 284-430 72-206 (207)
33 1qde_A EIF4A, translation init 100.0 3.3E-35 1.1E-39 293.4 19.4 207 2-433 14-220 (224)
34 2fsf_A Preprotein translocase 100.0 7E-36 2.4E-40 341.4 15.2 102 285-391 116-240 (853)
35 3ly5_A ATP-dependent RNA helic 100.0 8.8E-35 3E-39 298.5 20.7 131 284-424 126-257 (262)
36 2ykg_A Probable ATP-dependent 100.0 7.6E-35 2.6E-39 338.4 20.4 120 285-409 62-184 (696)
37 2zj8_A DNA helicase, putative 100.0 7.2E-35 2.5E-39 340.1 19.8 220 286-520 70-388 (720)
38 1t6n_A Probable ATP-dependent 100.0 1.6E-34 5.5E-39 287.8 19.3 137 284-429 82-220 (220)
39 3tbk_A RIG-I helicase domain; 100.0 6.8E-35 2.3E-39 328.2 18.3 122 284-410 52-176 (555)
40 3l9o_A ATP-dependent RNA helic 100.0 5.2E-35 1.8E-39 352.8 17.6 217 285-521 228-599 (1108)
41 4a2p_A RIG-I, retinoic acid in 100.0 3E-34 1E-38 323.5 21.9 120 284-409 55-177 (556)
42 2va8_A SSO2462, SKI2-type heli 100.0 2.4E-34 8.1E-39 335.5 20.4 220 286-521 77-410 (715)
43 1nkt_A Preprotein translocase 100.0 1.6E-34 5.3E-39 330.5 17.7 120 286-410 154-316 (922)
44 3dkp_A Probable ATP-dependent 100.0 3E-34 1E-38 290.8 16.8 140 284-432 98-243 (245)
45 2p6r_A Afuhel308 helicase; pro 100.0 1.3E-34 4.4E-39 337.1 15.6 223 286-520 70-389 (702)
46 4a2q_A RIG-I, retinoic acid in 100.0 2.6E-32 8.9E-37 321.9 22.1 121 284-409 296-418 (797)
47 2whx_A Serine protease/ntpase/ 100.0 6.5E-35 2.2E-39 333.1 -0.7 208 285-518 216-477 (618)
48 1gm5_A RECG; helicase, replica 100.0 4.8E-32 1.6E-36 315.4 20.3 214 285-518 418-696 (780)
49 2xgj_A ATP-dependent RNA helic 100.0 1.2E-31 4.1E-36 320.9 22.7 213 285-519 130-499 (1010)
50 2jlq_A Serine protease subunit 100.0 4E-32 1.4E-36 300.1 13.5 207 285-518 49-310 (451)
51 4a2w_A RIG-I, retinoic acid in 100.0 2.9E-31 1E-35 317.1 19.8 121 284-409 296-418 (936)
52 4f92_B U5 small nuclear ribonu 100.0 9.4E-31 3.2E-35 326.2 23.6 227 286-521 974-1310(1724)
53 2eyq_A TRCF, transcription-rep 100.0 1.3E-30 4.4E-35 316.2 20.6 214 285-518 653-921 (1151)
54 4gl2_A Interferon-induced heli 100.0 4.2E-31 1.4E-35 307.0 15.1 122 285-410 57-193 (699)
55 2wv9_A Flavivirin protease NS2 100.0 9E-33 3.1E-37 317.6 0.3 199 285-517 271-531 (673)
56 4a4z_A Antiviral helicase SKI2 100.0 8.6E-31 2.9E-35 313.5 17.0 116 285-420 83-198 (997)
57 3o8b_A HCV NS3 protease/helica 100.0 2E-31 7E-36 302.8 8.8 205 286-521 259-516 (666)
58 1wp9_A ATP-dependent RNA helic 100.0 3.9E-29 1.3E-33 274.7 23.2 114 286-409 54-167 (494)
59 1yks_A Genome polyprotein [con 100.0 2.4E-31 8.3E-36 292.8 3.9 199 285-517 38-297 (440)
60 4f92_B U5 small nuclear ribonu 100.0 1.6E-29 5.4E-34 315.3 19.1 231 283-522 133-476 (1724)
61 2oca_A DAR protein, ATP-depend 100.0 2.5E-29 8.4E-34 281.6 13.1 213 286-518 159-454 (510)
62 2z83_A Helicase/nucleoside tri 100.0 6.3E-29 2.2E-33 275.0 12.6 205 285-519 51-313 (459)
63 2xau_A PRE-mRNA-splicing facto 100.0 2.7E-28 9.4E-33 285.0 14.9 215 285-521 141-445 (773)
64 2fwr_A DNA repair protein RAD2 99.9 7E-28 2.4E-32 267.1 14.7 204 286-519 135-454 (472)
65 3rc3_A ATP-dependent RNA helic 99.9 3.3E-26 1.1E-30 262.5 17.8 206 287-518 182-444 (677)
66 3toj_A SET1/ASH2 histone methy 99.9 3.1E-27 1.1E-31 234.3 6.5 167 85-258 9-191 (213)
67 2v6i_A RNA helicase; membrane, 99.9 3E-26 1E-30 251.5 12.6 206 285-517 32-289 (431)
68 2yyo_A SPRY domain-containing 99.9 2E-26 6.9E-31 220.6 5.0 154 92-251 3-170 (171)
69 3h1t_A Type I site-specific re 99.9 2.6E-25 9E-30 253.6 11.9 202 284-508 235-545 (590)
70 3b6e_A Interferon-induced heli 99.9 5.9E-23 2E-27 202.5 8.4 119 285-407 83-216 (216)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.7E-21 5.8E-26 232.4 19.0 106 285-409 331-439 (1038)
72 3jux_A Protein translocase sub 99.9 2.4E-20 8.2E-25 209.6 27.0 62 462-523 522-591 (822)
73 3llm_A ATP-dependent RNA helic 99.9 1.6E-21 5.6E-26 196.3 13.8 121 285-425 110-232 (235)
74 1z63_A Helicase of the SNF2/RA 99.8 1E-19 3.5E-24 202.9 17.6 102 286-410 88-189 (500)
75 3dmq_A RNA polymerase-associat 99.8 4.1E-20 1.4E-24 221.4 13.6 54 463-516 557-610 (968)
76 1rif_A DAR protein, DNA helica 99.8 1.4E-19 4.9E-24 187.0 10.5 106 286-410 159-264 (282)
77 2ipc_A Preprotein translocase 99.8 2.1E-19 7E-24 205.4 11.2 101 286-391 122-248 (997)
78 2fz4_A DNA repair protein RAD2 99.7 1.3E-16 4.5E-21 160.7 13.4 95 286-410 135-230 (237)
79 2d7d_A Uvrabc system protein B 99.6 3.4E-17 1.2E-21 188.5 4.6 218 320-593 302-589 (661)
80 3mwy_W Chromo domain-containin 99.6 7.1E-15 2.4E-19 173.1 23.6 106 286-408 288-405 (800)
81 1z3i_X Similar to RAD54-like; 99.6 1.1E-14 3.9E-19 167.3 22.3 107 286-408 116-230 (644)
82 2jk9_A SPRY domain-containing 99.6 4E-16 1.4E-20 154.5 5.0 149 89-241 33-205 (212)
83 3emw_A SPRY domain-containing 99.5 2.9E-15 1E-19 148.5 5.5 150 88-241 43-214 (217)
84 2rb4_A ATP-dependent RNA helic 99.5 3.5E-14 1.2E-18 135.9 12.5 137 382-591 25-169 (175)
85 2p6n_A ATP-dependent RNA helic 99.5 9.1E-15 3.1E-19 142.4 8.3 57 462-518 104-160 (191)
86 2hjv_A ATP-dependent RNA helic 99.5 3.2E-14 1.1E-18 134.7 11.8 125 399-589 36-162 (163)
87 3crv_A XPD/RAD3 related DNA he 99.5 1.3E-14 4.4E-19 163.9 10.3 87 286-375 49-187 (551)
88 1fuk_A Eukaryotic initiation f 99.5 7.3E-14 2.5E-18 132.3 13.8 140 381-593 20-161 (165)
89 1t5i_A C_terminal domain of A 99.5 3E-14 1E-18 136.2 10.5 141 381-593 21-163 (172)
90 1c4o_A DNA nucleotide excision 99.5 1.6E-14 5.4E-19 166.3 9.2 186 320-520 296-551 (664)
91 3eaq_A Heat resistant RNA depe 99.5 6.8E-14 2.3E-18 138.4 11.4 126 399-590 32-159 (212)
92 2afj_A Gene rich cluster, C9 g 99.5 1.3E-14 4.4E-19 145.0 5.8 150 89-242 41-212 (226)
93 2jgn_A DBX, DDX3, ATP-dependen 99.4 1.5E-13 5.1E-18 133.0 9.5 118 381-518 35-152 (185)
94 3i32_A Heat resistant RNA depe 99.4 2.7E-13 9.1E-18 141.1 12.0 126 399-590 29-156 (300)
95 2vl7_A XPD; helicase, unknown 99.4 1.7E-13 5.9E-18 154.2 5.4 43 19-62 3-49 (540)
96 2yjt_D ATP-dependent RNA helic 99.0 1.7E-13 5.9E-18 130.5 0.0 61 458-518 76-136 (170)
97 4a15_A XPD helicase, ATP-depen 99.1 5.5E-11 1.9E-15 135.7 6.6 43 24-66 3-49 (620)
98 1w36_D RECD, exodeoxyribonucle 98.7 5.9E-09 2E-13 118.8 5.6 37 26-62 151-189 (608)
99 1z5z_A Helicase of the SNF2/RA 98.2 1E-06 3.4E-11 90.1 4.9 66 453-518 155-223 (271)
100 3e1s_A Exodeoxyribonuclease V, 96.8 0.0038 1.3E-07 70.3 10.6 32 24-55 189-220 (574)
101 2gk6_A Regulator of nonsense t 96.8 0.0044 1.5E-07 70.5 11.0 33 23-55 179-211 (624)
102 3upu_A ATP-dependent DNA helic 96.7 0.0038 1.3E-07 68.2 9.6 38 17-54 18-60 (459)
103 4b3f_X DNA-binding protein smu 96.7 0.0017 6E-08 74.2 7.0 32 24-55 189-221 (646)
104 2xzl_A ATP-dependent helicase 96.6 0.013 4.3E-07 68.6 13.4 33 23-55 359-391 (802)
105 2wjy_A Regulator of nonsense t 96.5 0.0082 2.8E-07 70.1 10.6 32 24-55 356-387 (800)
106 2vok_A 52 kDa RO protein; poly 94.8 0.039 1.3E-06 52.7 6.2 88 116-206 49-143 (188)
107 3uv9_A TRIM5alpha, tripartite 94.0 0.048 1.6E-06 52.0 4.9 111 118-232 39-172 (186)
108 2wl1_A Pyrin, marenostrin; amy 93.8 0.082 2.8E-06 50.5 6.2 87 117-206 54-148 (191)
109 2o0j_A Terminase, DNA packagin 93.7 0.34 1.2E-05 51.4 11.4 37 24-60 163-199 (385)
110 2fbe_A Predicted: similar to R 92.9 0.14 4.8E-06 49.4 6.3 87 117-206 51-145 (201)
111 3kb5_A Tripartite motif-contai 92.8 0.18 6.1E-06 48.2 6.8 87 117-205 54-150 (193)
112 3lfu_A DNA helicase II; SF1 he 92.3 0.22 7.4E-06 56.4 7.9 32 23-56 8-39 (647)
113 3cpe_A Terminase, DNA packagin 92.2 0.88 3E-05 51.1 12.6 35 24-58 163-197 (592)
114 2hjv_A ATP-dependent RNA helic 91.7 3.2 0.00011 37.7 13.9 73 284-369 35-111 (163)
115 3vkw_A Replicase large subunit 91.7 0.19 6.5E-06 54.2 6.0 44 252-305 162-205 (446)
116 2rb4_A ATP-dependent RNA helic 90.9 2.7 9.3E-05 38.6 12.7 72 284-368 34-109 (175)
117 1fuk_A Eukaryotic initiation f 89.6 1.3 4.3E-05 40.6 8.9 74 283-369 29-106 (165)
118 2p6n_A ATP-dependent RNA helic 89.6 1.2 4E-05 42.1 8.9 73 284-369 54-130 (191)
119 1pjr_A PCRA; DNA repair, DNA r 89.5 0.42 1.4E-05 55.2 6.7 32 23-56 10-41 (724)
120 3te6_A Regulatory protein SIR3 89.1 1 3.6E-05 46.4 8.7 23 247-269 41-63 (318)
121 3eaq_A Heat resistant RNA depe 88.2 1.6 5.5E-05 41.8 9.0 71 284-367 31-105 (212)
122 1uaa_A REP helicase, protein ( 87.7 0.48 1.6E-05 54.1 5.5 31 24-56 2-32 (673)
123 1t5i_A C_terminal domain of A 87.3 1.5 5.3E-05 40.4 7.9 73 284-369 31-107 (172)
124 1d2n_A N-ethylmaleimide-sensit 86.1 0.73 2.5E-05 45.9 5.3 23 248-270 61-83 (272)
125 2jgn_A DBX, DDX3, ATP-dependen 85.9 4.1 0.00014 38.0 10.2 73 283-368 45-121 (185)
126 3bos_A Putative DNA replicatio 84.6 0.66 2.2E-05 44.6 4.0 19 250-268 51-69 (242)
127 3syl_A Protein CBBX; photosynt 83.7 2.5 8.4E-05 42.6 8.1 21 249-269 65-85 (309)
128 3pey_A ATP-dependent RNA helic 83.7 10 0.00034 39.0 13.0 93 1-102 4-98 (395)
129 2kjq_A DNAA-related protein; s 83.5 0.81 2.8E-05 41.5 3.8 57 360-422 82-141 (149)
130 2chg_A Replication factor C sm 83.1 5.7 0.00019 37.0 9.9 40 360-406 101-140 (226)
131 2v1u_A Cell division control p 82.2 2.6 9E-05 43.5 7.8 23 248-270 41-63 (387)
132 2zpa_A Uncharacterized protein 81.5 1.2 4E-05 50.6 4.9 33 24-56 175-209 (671)
133 3u4q_A ATP-dependent helicase/ 81.4 1.1 3.6E-05 55.0 4.9 31 24-56 10-40 (1232)
134 2d7d_A Uvrabc system protein B 81.3 4 0.00014 46.4 9.3 78 283-373 444-525 (661)
135 3ec2_A DNA replication protein 80.8 0.92 3.1E-05 42.0 3.2 28 26-53 16-52 (180)
136 2j0s_A ATP-dependent RNA helic 80.3 15 0.00051 38.2 12.9 93 2-103 37-129 (410)
137 3i32_A Heat resistant RNA depe 80.3 3.8 0.00013 41.6 8.0 71 284-367 28-102 (300)
138 2i4i_A ATP-dependent RNA helic 80.3 4.3 0.00015 42.4 8.7 72 283-367 275-350 (417)
139 1l8q_A Chromosomal replication 80.2 2.3 8E-05 43.3 6.4 21 250-270 36-56 (324)
140 3fht_A ATP-dependent RNA helic 79.4 4.5 0.00015 42.1 8.5 94 1-103 24-119 (412)
141 1c4o_A DNA nucleotide excision 79.2 5.8 0.0002 45.1 9.8 78 283-373 438-519 (664)
142 2z4s_A Chromosomal replication 78.5 3.6 0.00012 44.2 7.4 19 251-269 130-148 (440)
143 1xti_A Probable ATP-dependent 78.2 5.7 0.0002 41.0 8.8 93 2-103 8-100 (391)
144 3fmo_B ATP-dependent RNA helic 78.1 0.32 1.1E-05 49.6 -1.0 44 212-272 109-152 (300)
145 3ec2_A DNA replication protein 77.0 1 3.4E-05 41.7 2.2 23 249-271 36-58 (180)
146 1s2m_A Putative ATP-dependent 76.8 6.5 0.00022 40.8 8.8 93 2-103 21-113 (400)
147 2qby_A CDC6 homolog 1, cell di 76.5 5.1 0.00018 41.2 7.8 24 248-271 42-65 (386)
148 3co5_A Putative two-component 76.5 1.4 4.7E-05 39.3 2.9 18 36-53 24-41 (143)
149 1hv8_A Putative ATP-dependent 76.2 4.7 0.00016 41.0 7.4 91 2-102 6-97 (367)
150 3i5x_A ATP-dependent RNA helic 76.0 7.7 0.00026 42.6 9.4 89 9-102 79-169 (563)
151 2v1x_A ATP-dependent DNA helic 76.0 6.2 0.00021 44.1 8.7 84 4-102 23-107 (591)
152 3sqw_A ATP-dependent RNA helic 75.0 8.4 0.00029 42.7 9.5 89 9-102 28-118 (579)
153 1oyw_A RECQ helicase, ATP-depe 74.9 6.8 0.00023 43.0 8.5 87 1-102 1-88 (523)
154 2db3_A ATP-dependent RNA helic 74.6 7.7 0.00026 41.3 8.7 70 286-368 302-375 (434)
155 2ipc_A Preprotein translocase 74.5 3.4 0.00011 48.3 6.0 68 20-102 76-143 (997)
156 3u61_B DNA polymerase accessor 74.3 1.7 5.7E-05 44.3 3.2 40 360-405 104-143 (324)
157 1fnn_A CDC6P, cell division co 73.9 2.5 8.5E-05 43.8 4.5 20 253-272 46-65 (389)
158 1jbk_A CLPB protein; beta barr 73.9 7.4 0.00025 35.1 7.3 21 249-269 41-61 (195)
159 1a5t_A Delta prime, HOLB; zinc 73.5 4.3 0.00015 41.7 6.2 23 250-272 23-45 (334)
160 2b8t_A Thymidine kinase; deoxy 73.3 11 0.00036 36.6 8.5 33 340-373 69-101 (223)
161 3n70_A Transport activator; si 73.1 1.7 5.9E-05 38.7 2.6 18 37-54 22-39 (145)
162 2qgz_A Helicase loader, putati 72.9 4.1 0.00014 41.5 5.7 21 250-270 151-171 (308)
163 2j9r_A Thymidine kinase; TK1, 72.8 2.2 7.5E-05 41.3 3.4 37 254-295 31-67 (214)
164 2x8a_A Nuclear valosin-contain 71.8 0.56 1.9E-05 47.2 -1.1 51 3-54 8-59 (274)
165 2orw_A Thymidine kinase; TMTK, 71.5 6.4 0.00022 36.7 6.3 36 254-294 6-41 (184)
166 2kjq_A DNAA-related protein; s 70.9 1.8 6.1E-05 39.1 2.2 17 38-54 35-51 (149)
167 2yjt_D ATP-dependent RNA helic 73.2 0.89 3.1E-05 41.9 0.0 73 284-369 30-106 (170)
168 1yks_A Genome polyprotein [con 70.3 6.6 0.00023 42.1 6.9 55 35-100 4-58 (440)
169 1p9r_A General secretion pathw 69.6 2 6.7E-05 46.0 2.5 17 38-54 166-182 (418)
170 3ly5_A ATP-dependent RNA helic 69.1 0.63 2.1E-05 46.3 -1.5 42 212-272 71-112 (262)
171 2p65_A Hypothetical protein PF 68.4 4 0.00014 37.0 4.1 22 249-270 41-62 (187)
172 2qby_B CDC6 homolog 3, cell di 68.0 7.8 0.00027 40.0 6.7 24 249-272 43-66 (384)
173 2vl7_A XPD; helicase, unknown 67.9 3.3 0.00011 45.7 4.0 109 251-374 26-188 (540)
174 3h4m_A Proteasome-activating n 66.9 6.8 0.00023 38.7 5.8 21 249-269 49-69 (285)
175 4b4t_M 26S protease regulatory 66.8 1.6 5.5E-05 46.9 1.1 50 2-54 178-230 (434)
176 4b3n_A Maltose-binding peripla 66.7 2.8 9.6E-05 47.0 3.1 82 120-205 461-565 (602)
177 2w58_A DNAI, primosome compone 65.7 5.5 0.00019 37.2 4.6 20 251-270 54-73 (202)
178 1wp9_A ATP-dependent RNA helic 65.4 11 0.00039 39.5 7.5 67 24-102 9-75 (494)
179 3fe2_A Probable ATP-dependent 65.2 1.1 3.7E-05 43.7 -0.6 41 213-272 47-87 (242)
180 3jvv_A Twitching mobility prot 65.1 2.9 9.8E-05 43.8 2.6 18 37-54 121-138 (356)
181 2orv_A Thymidine kinase; TP4A 64.1 4 0.00014 40.0 3.2 36 254-294 22-57 (234)
182 3h4m_A Proteasome-activating n 64.0 1.9 6.7E-05 42.8 1.0 49 3-54 15-66 (285)
183 2oap_1 GSPE-2, type II secreti 63.7 4.3 0.00015 44.6 3.8 37 15-53 237-274 (511)
184 3iuy_A Probable ATP-dependent 62.9 1.1 3.9E-05 43.0 -1.0 42 212-272 37-78 (228)
185 2eyu_A Twitching motility prot 62.6 2.6 8.9E-05 42.0 1.6 19 36-54 22-40 (261)
186 2xau_A PRE-mRNA-splicing facto 62.5 15 0.00052 42.4 8.3 86 2-97 72-158 (773)
187 3dkp_A Probable ATP-dependent 62.0 1.3 4.4E-05 43.1 -0.7 42 212-272 46-87 (245)
188 1vec_A ATP-dependent RNA helic 61.9 1.4 4.8E-05 41.4 -0.5 42 212-272 20-61 (206)
189 2eyq_A TRCF, transcription-rep 61.7 8.9 0.0003 46.5 6.4 83 6-101 585-674 (1151)
190 1ixz_A ATP-dependent metallopr 61.7 1.7 5.7E-05 42.7 -0.0 48 3-53 14-63 (254)
191 2wv9_A Flavivirin protease NS2 60.9 15 0.00052 41.7 7.8 74 16-100 202-291 (673)
192 3hws_A ATP-dependent CLP prote 59.8 7 0.00024 40.5 4.5 17 38-54 50-66 (363)
193 2w58_A DNAI, primosome compone 59.8 5.1 0.00017 37.4 3.1 15 40-54 55-69 (202)
194 3cf0_A Transitional endoplasmi 59.0 6 0.0002 39.9 3.6 50 3-54 13-64 (301)
195 3eiq_A Eukaryotic initiation f 59.0 6.8 0.00023 40.7 4.2 72 284-368 280-355 (414)
196 2v6i_A RNA helicase; membrane, 58.7 20 0.00067 38.2 7.8 51 38-99 1-51 (431)
197 3e2i_A Thymidine kinase; Zn-bi 58.6 3.3 0.00011 40.1 1.5 37 254-295 31-67 (219)
198 1wrb_A DJVLGB; RNA helicase, D 58.0 1.6 5.6E-05 42.6 -0.8 42 212-272 40-81 (253)
199 2pl3_A Probable ATP-dependent 58.0 1.7 5.7E-05 42.0 -0.7 41 212-271 42-82 (236)
200 1ofh_A ATP-dependent HSL prote 58.0 10 0.00035 37.7 5.2 16 39-54 50-65 (310)
201 1lv7_A FTSH; alpha/beta domain 58.0 5.6 0.00019 38.8 3.1 50 2-54 9-60 (257)
202 2ewv_A Twitching motility prot 57.9 3.4 0.00011 43.4 1.6 19 36-54 133-151 (372)
203 1sxj_A Activator 1 95 kDa subu 57.6 9.4 0.00032 41.8 5.2 22 249-270 75-96 (516)
204 1iy2_A ATP-dependent metallopr 57.4 2.2 7.5E-05 42.5 -0.0 49 3-54 38-88 (278)
205 1w5s_A Origin recognition comp 57.2 7.6 0.00026 40.5 4.2 20 251-270 50-71 (412)
206 2e63_A KIAA1787 protein; struc 57.1 9.2 0.00031 35.5 4.2 86 130-216 50-148 (170)
207 2gno_A DNA polymerase III, gam 57.0 7.3 0.00025 39.6 3.9 39 360-405 81-119 (305)
208 1w4r_A Thymidine kinase; type 56.8 5 0.00017 38.1 2.4 36 253-293 22-57 (195)
209 1t6n_A Probable ATP-dependent 56.6 1.8 6.2E-05 41.2 -0.8 42 212-272 31-72 (220)
210 3ber_A Probable ATP-dependent 56.3 1.9 6.4E-05 42.4 -0.7 41 212-271 60-100 (249)
211 2gxq_A Heat resistant RNA depe 56.3 1.8 6.3E-05 40.5 -0.7 42 212-272 18-59 (207)
212 2oxc_A Probable ATP-dependent 55.9 1.9 6.4E-05 41.6 -0.8 41 212-271 41-81 (230)
213 2jlq_A Serine protease subunit 55.8 22 0.00076 37.9 7.7 67 21-99 1-68 (451)
214 1xwi_A SKD1 protein; VPS4B, AA 55.7 7.4 0.00025 39.7 3.7 45 3-53 10-59 (322)
215 3nbx_X ATPase RAVA; AAA+ ATPas 55.0 8.7 0.0003 42.0 4.3 33 21-53 23-55 (500)
216 2qp9_X Vacuolar protein sortin 55.0 26 0.00091 36.1 7.9 22 249-270 82-103 (355)
217 1xx6_A Thymidine kinase; NESG, 54.8 20 0.00067 33.7 6.2 36 254-294 11-46 (191)
218 2gza_A Type IV secretion syste 54.8 4.4 0.00015 42.3 1.8 18 36-53 172-189 (361)
219 2qz4_A Paraplegin; AAA+, SPG7, 54.7 6.3 0.00022 38.3 2.9 50 2-54 3-54 (262)
220 1qde_A EIF4A, translation init 54.6 1.9 6.4E-05 41.2 -1.0 41 212-271 31-71 (224)
221 3eie_A Vacuolar protein sortin 54.5 9.2 0.00031 38.9 4.2 21 249-269 49-69 (322)
222 2bjv_A PSP operon transcriptio 54.4 6 0.0002 38.8 2.6 18 37-54 27-44 (265)
223 1jbk_A CLPB protein; beta barr 54.0 6.4 0.00022 35.6 2.6 16 39-54 43-58 (195)
224 3cf0_A Transitional endoplasmi 53.8 30 0.001 34.6 7.9 23 248-270 46-68 (301)
225 3eie_A Vacuolar protein sortin 52.8 10 0.00035 38.5 4.3 46 3-54 16-66 (322)
226 4b4t_J 26S protease regulatory 52.7 3.6 0.00012 43.7 0.7 49 3-54 146-197 (405)
227 2pt7_A CAG-ALFA; ATPase, prote 52.3 4.7 0.00016 41.5 1.5 18 37-54 169-186 (330)
228 2oca_A DAR protein, ATP-depend 51.7 32 0.0011 37.0 8.3 69 23-102 112-180 (510)
229 3bor_A Human initiation factor 51.5 1.2 4.1E-05 43.3 -3.0 41 212-271 47-87 (237)
230 3bos_A Putative DNA replicatio 51.3 4.6 0.00016 38.4 1.2 16 38-53 51-66 (242)
231 3hu3_A Transitional endoplasmi 51.1 15 0.00053 39.9 5.5 23 248-270 235-257 (489)
232 3kl4_A SRP54, signal recogniti 50.8 23 0.00079 37.8 6.7 55 360-421 178-235 (433)
233 3b9p_A CG5977-PA, isoform A; A 50.7 13 0.00043 37.0 4.4 49 3-54 19-69 (297)
234 1e9r_A Conjugal transfer prote 50.5 4.4 0.00015 43.2 1.0 40 362-409 280-319 (437)
235 3b85_A Phosphate starvation-in 50.5 11 0.00038 35.9 3.8 31 24-54 7-37 (208)
236 2whx_A Serine protease/ntpase/ 50.4 32 0.0011 38.5 8.1 81 7-99 155-235 (618)
237 2p65_A Hypothetical protein PF 49.8 3.8 0.00013 37.1 0.3 16 39-54 43-58 (187)
238 1q0u_A Bstdead; DEAD protein, 49.6 1.7 5.9E-05 41.4 -2.2 41 212-271 21-61 (219)
239 3rc3_A ATP-dependent RNA helic 49.4 35 0.0012 38.7 8.3 74 286-373 322-401 (677)
240 2qgz_A Helicase loader, putati 48.8 7.6 0.00026 39.5 2.4 16 39-54 152-167 (308)
241 2iut_A DNA translocase FTSK; n 48.7 68 0.0023 35.5 10.2 19 252-270 215-233 (574)
242 1kgd_A CASK, peripheral plasma 48.7 5.3 0.00018 36.9 1.1 17 38-54 4-20 (180)
243 3pfi_A Holliday junction ATP-d 48.2 21 0.00071 36.2 5.7 21 249-269 53-73 (338)
244 3vfd_A Spastin; ATPase, microt 48.0 17 0.00057 38.0 5.0 21 249-269 146-166 (389)
245 1xwi_A SKD1 protein; VPS4B, AA 47.6 25 0.00085 35.7 6.2 22 249-270 43-64 (322)
246 3o8b_A HCV NS3 protease/helica 47.6 18 0.00062 40.9 5.4 59 24-97 216-275 (666)
247 2r44_A Uncharacterized protein 47.6 6.7 0.00023 39.9 1.8 24 31-54 38-61 (331)
248 4gl2_A Interferon-induced heli 47.6 12 0.00042 42.2 4.2 76 23-104 6-82 (699)
249 1hqc_A RUVB; extended AAA-ATPa 47.5 27 0.00092 34.9 6.4 20 250-269 37-56 (324)
250 3exa_A TRNA delta(2)-isopenten 47.2 5.3 0.00018 41.0 0.9 12 42-53 6-17 (322)
251 2qp9_X Vacuolar protein sortin 46.9 3.1 0.00011 43.3 -0.9 16 39-54 84-99 (355)
252 2z0m_A 337AA long hypothetical 46.8 25 0.00086 35.0 6.0 79 9-102 1-79 (337)
253 3foz_A TRNA delta(2)-isopenten 46.5 5.5 0.00019 40.8 0.9 12 42-53 13-24 (316)
254 3pfi_A Holliday junction ATP-d 46.3 15 0.00051 37.2 4.3 15 40-54 56-70 (338)
255 3a8t_A Adenylate isopentenyltr 46.2 5.6 0.00019 41.2 0.9 14 40-53 41-54 (339)
256 3syl_A Protein CBBX; photosynt 46.2 6.4 0.00022 39.4 1.3 16 39-54 67-82 (309)
257 3uk6_A RUVB-like 2; hexameric 45.6 10 0.00035 38.9 2.9 16 39-54 70-85 (368)
258 3nwn_A Kinesin-like protein KI 45.6 8.7 0.0003 40.1 2.3 24 33-56 97-122 (359)
259 2zan_A Vacuolar protein sortin 45.4 32 0.0011 36.6 6.9 22 249-270 165-186 (444)
260 4b4t_H 26S protease regulatory 45.4 5.5 0.00019 43.0 0.7 49 3-54 207-258 (467)
261 1d2n_A N-ethylmaleimide-sensit 45.0 2.9 0.0001 41.4 -1.4 15 40-54 65-79 (272)
262 4b4t_L 26S protease subunit RP 44.4 5.7 0.00019 42.7 0.7 49 3-54 179-230 (437)
263 1ojl_A Transcriptional regulat 44.0 9.4 0.00032 38.6 2.2 17 38-54 24-40 (304)
264 3fmp_B ATP-dependent RNA helic 43.7 4.9 0.00017 43.3 0.0 92 2-102 92-185 (479)
265 3tbk_A RIG-I helicase domain; 43.7 37 0.0013 36.5 7.2 72 24-102 4-75 (555)
266 3d8b_A Fidgetin-like protein 1 43.7 17 0.00058 37.6 4.2 16 39-54 117-132 (357)
267 2qmh_A HPR kinase/phosphorylas 43.5 6.9 0.00024 37.4 1.0 16 38-53 33-48 (205)
268 3te6_A Regulatory protein SIR3 43.1 4.4 0.00015 41.6 -0.4 44 360-409 131-174 (318)
269 4b4t_K 26S protease regulatory 42.9 5.6 0.00019 42.6 0.3 49 3-54 170-221 (428)
270 2chg_A Replication factor C sm 42.6 14 0.00048 34.1 3.1 15 40-54 39-53 (226)
271 4b4t_I 26S protease regulatory 42.4 7.4 0.00025 41.6 1.2 49 3-54 180-231 (437)
272 2ze6_A Isopentenyl transferase 41.9 7.2 0.00025 38.3 0.9 13 42-54 4-16 (253)
273 1bg2_A Kinesin; motor protein, 41.6 12 0.0004 38.6 2.4 25 33-57 70-96 (325)
274 1lvg_A Guanylate kinase, GMP k 41.6 8.1 0.00028 36.3 1.2 16 38-53 3-18 (198)
275 1u0j_A DNA replication protein 41.3 23 0.00078 35.3 4.5 43 11-56 73-121 (267)
276 2zan_A Vacuolar protein sortin 41.2 5.9 0.0002 42.5 0.2 48 3-54 132-182 (444)
277 3oiy_A Reverse gyrase helicase 41.2 45 0.0015 34.6 7.1 81 11-104 8-89 (414)
278 3lw7_A Adenylate kinase relate 40.8 7.8 0.00027 34.6 0.9 13 42-54 4-16 (179)
279 2ykg_A Probable ATP-dependent 40.8 22 0.00076 40.0 4.9 84 13-103 2-85 (696)
280 3dc4_A Kinesin-like protein NO 40.6 11 0.00037 39.1 2.1 23 34-56 88-112 (344)
281 4a14_A Kinesin, kinesin-like p 40.5 12 0.00041 38.8 2.4 24 33-56 76-101 (344)
282 2z83_A Helicase/nucleoside tri 40.2 28 0.00097 37.2 5.4 66 21-100 6-71 (459)
283 2nr8_A Kinesin-like protein KI 40.1 13 0.00045 38.7 2.6 24 33-56 96-121 (358)
284 3gbj_A KIF13B protein; kinesin 40.0 13 0.00045 38.7 2.6 24 33-56 85-110 (354)
285 3b6u_A Kinesin-like protein KI 39.7 13 0.00045 38.9 2.6 22 35-56 96-119 (372)
286 2vvg_A Kinesin-2; motor protei 39.6 13 0.00044 38.6 2.4 22 35-56 84-107 (350)
287 1v8k_A Kinesin-like protein KI 39.6 11 0.00039 39.9 2.0 23 34-56 148-172 (410)
288 3iij_A Coilin-interacting nucl 39.5 8.5 0.00029 35.1 1.0 18 37-54 9-26 (180)
289 2h58_A Kinesin-like protein KI 39.4 13 0.00044 38.3 2.4 25 32-56 72-98 (330)
290 1t5c_A CENP-E protein, centrom 39.4 14 0.00047 38.5 2.6 23 34-56 71-95 (349)
291 3lre_A Kinesin-like protein KI 39.3 13 0.00044 38.7 2.4 23 34-56 99-123 (355)
292 3d3q_A TRNA delta(2)-isopenten 39.1 8.5 0.00029 39.9 0.9 13 41-53 9-21 (340)
293 1goj_A Kinesin, kinesin heavy 39.0 13 0.00045 38.6 2.4 22 35-56 75-98 (355)
294 2y65_A Kinesin, kinesin heavy 39.0 13 0.00046 38.8 2.4 22 35-56 79-102 (365)
295 3tau_A Guanylate kinase, GMP k 38.8 9.5 0.00032 36.0 1.2 17 38-54 7-23 (208)
296 3vkg_A Dynein heavy chain, cyt 38.7 19 0.00065 48.0 4.3 45 11-56 875-923 (3245)
297 2va8_A SSO2462, SKI2-type heli 38.6 68 0.0023 36.2 8.6 88 2-100 8-96 (715)
298 3dmq_A RNA polymerase-associat 38.4 98 0.0034 36.6 10.1 77 283-371 502-584 (968)
299 4gp7_A Metallophosphoesterase; 38.2 9 0.00031 35.0 0.9 17 38-54 8-24 (171)
300 1g8p_A Magnesium-chelatase 38 38.2 14 0.00049 37.4 2.5 16 39-54 45-60 (350)
301 3vaa_A Shikimate kinase, SK; s 38.1 9.9 0.00034 35.5 1.2 16 38-53 24-39 (199)
302 1l8q_A Chromosomal replication 38.0 10 0.00035 38.4 1.4 16 39-54 37-52 (324)
303 1njg_A DNA polymerase III subu 38.0 14 0.00049 34.5 2.4 14 41-54 47-60 (250)
304 3crm_A TRNA delta(2)-isopenten 37.8 9.1 0.00031 39.3 0.9 14 41-54 7-20 (323)
305 1f9v_A Kinesin-like protein KA 37.7 14 0.00048 38.3 2.3 25 32-56 76-102 (347)
306 3vfd_A Spastin; ATPase, microt 37.7 24 0.00081 36.8 4.2 16 39-54 148-163 (389)
307 3t0q_A AGR253WP; kinesin, alph 37.7 13 0.00046 38.5 2.2 25 32-56 77-103 (349)
308 1x88_A Kinesin-like protein KI 37.6 14 0.00048 38.5 2.4 23 34-56 82-106 (359)
309 3f9v_A Minichromosome maintena 37.6 12 0.00042 41.7 2.1 13 41-53 329-341 (595)
310 3eph_A TRNA isopentenyltransfe 37.3 9.7 0.00033 40.4 1.1 12 42-53 5-16 (409)
311 1ex7_A Guanylate kinase; subst 37.2 9.7 0.00033 35.8 0.9 14 40-53 2-15 (186)
312 3trf_A Shikimate kinase, SK; a 36.9 10 0.00036 34.6 1.1 16 39-54 5-20 (185)
313 1hqc_A RUVB; extended AAA-ATPa 36.8 11 0.00039 37.7 1.5 15 39-53 38-52 (324)
314 4etp_A Kinesin-like protein KA 36.8 15 0.0005 39.0 2.4 25 32-56 132-158 (403)
315 2j41_A Guanylate kinase; GMP, 36.8 10 0.00035 35.2 1.1 16 38-53 5-20 (207)
316 2zfi_A Kinesin-like protein KI 36.7 15 0.00052 38.4 2.4 23 34-56 83-107 (366)
317 4b4t_J 26S protease regulatory 36.7 34 0.0012 36.2 5.2 23 247-269 178-200 (405)
318 3t15_A Ribulose bisphosphate c 36.5 10 0.00035 38.1 1.1 15 40-54 37-51 (293)
319 3cob_A Kinesin heavy chain-lik 36.2 14 0.00048 38.7 2.1 25 32-56 71-97 (369)
320 2r2a_A Uncharacterized protein 36.0 11 0.00038 35.7 1.2 43 362-407 88-132 (199)
321 1z6g_A Guanylate kinase; struc 35.9 12 0.00041 35.7 1.4 17 37-53 21-37 (218)
322 4akg_A Glutathione S-transfera 35.8 19 0.00066 47.3 3.7 45 11-56 892-940 (2695)
323 2wbe_C Bipolar kinesin KRP-130 35.7 15 0.0005 38.6 2.1 22 35-56 95-118 (373)
324 3ney_A 55 kDa erythrocyte memb 35.7 11 0.00038 35.7 1.1 18 37-54 17-34 (197)
325 1zp6_A Hypothetical protein AT 35.7 8.9 0.0003 35.2 0.4 17 38-54 8-24 (191)
326 2heh_A KIF2C protein; kinesin, 35.7 15 0.00051 38.7 2.2 23 34-56 128-152 (387)
327 3u06_A Protein claret segregat 35.6 16 0.00054 38.9 2.4 25 32-56 130-156 (412)
328 2v1u_A Cell division control p 35.4 11 0.00039 38.5 1.3 16 39-54 44-59 (387)
329 2zj8_A DNA helicase, putative 35.3 58 0.002 36.9 7.3 89 3-102 2-91 (720)
330 1fuu_A Yeast initiation factor 35.3 8 0.00027 39.9 0.0 71 284-367 259-333 (394)
331 2qor_A Guanylate kinase; phosp 35.1 11 0.00039 35.2 1.1 18 36-53 9-26 (204)
332 2l8b_A Protein TRAI, DNA helic 35.0 22 0.00074 33.4 2.9 33 25-57 35-69 (189)
333 1ko7_A HPR kinase/phosphatase; 34.9 23 0.00078 36.2 3.3 46 8-53 91-158 (314)
334 1iqp_A RFCS; clamp loader, ext 34.8 21 0.00072 35.6 3.1 39 360-405 109-147 (327)
335 1ly1_A Polynucleotide kinase; 34.6 11 0.00039 33.9 0.9 13 42-54 5-17 (181)
336 4fcw_A Chaperone protein CLPB; 34.3 13 0.00043 37.2 1.3 15 40-54 48-62 (311)
337 4b4t_K 26S protease regulatory 34.3 70 0.0024 34.0 7.2 23 247-269 202-224 (428)
338 3bfn_A Kinesin-like protein KI 34.3 16 0.00054 38.6 2.1 32 25-56 75-116 (388)
339 1ry6_A Internal kinesin; kines 34.1 15 0.00052 38.3 1.9 19 38-56 82-102 (360)
340 1sxj_D Activator 1 41 kDa subu 34.1 20 0.00067 36.4 2.8 38 361-405 133-170 (353)
341 3tr0_A Guanylate kinase, GMP k 34.0 13 0.00043 34.6 1.2 17 38-54 6-22 (205)
342 2chq_A Replication factor C sm 33.9 26 0.00087 34.8 3.6 14 41-54 40-53 (319)
343 2rep_A Kinesin-like protein KI 33.8 18 0.00061 38.0 2.4 24 33-56 108-133 (376)
344 1qhx_A CPT, protein (chloramph 33.8 12 0.00041 33.9 0.9 15 39-53 3-17 (178)
345 3c8u_A Fructokinase; YP_612366 33.7 13 0.00045 34.9 1.3 17 38-54 21-37 (208)
346 2r62_A Cell division protease 33.6 9.6 0.00033 37.3 0.3 16 39-54 44-59 (268)
347 1um8_A ATP-dependent CLP prote 33.3 14 0.00047 38.4 1.4 16 39-54 72-87 (376)
348 3fho_A ATP-dependent RNA helic 33.0 8.9 0.0003 41.8 -0.1 91 4-103 121-213 (508)
349 1m7g_A Adenylylsulfate kinase; 32.9 18 0.00061 34.0 2.1 29 25-54 12-40 (211)
350 3a00_A Guanylate kinase, GMP k 32.6 14 0.00049 34.0 1.3 14 41-54 3-16 (186)
351 3bh0_A DNAB-like replicative h 32.6 13 0.00045 37.7 1.1 36 24-62 51-90 (315)
352 3kb2_A SPBC2 prophage-derived 32.5 13 0.00044 33.3 0.9 13 42-54 4-16 (173)
353 3kta_A Chromosome segregation 32.5 13 0.00046 33.8 1.1 15 40-54 27-41 (182)
354 2w0m_A SSO2452; RECA, SSPF, un 32.4 12 0.0004 35.3 0.7 15 39-53 23-37 (235)
355 4ag6_A VIRB4 ATPase, type IV s 32.2 14 0.00049 38.5 1.4 44 361-409 262-308 (392)
356 1kag_A SKI, shikimate kinase I 32.2 15 0.00051 33.0 1.3 16 39-54 4-19 (173)
357 2zr9_A Protein RECA, recombina 32.1 40 0.0014 34.8 4.7 116 249-405 59-195 (349)
358 2c9o_A RUVB-like 1; hexameric 31.7 13 0.00045 39.8 1.0 16 39-54 63-78 (456)
359 1f2t_A RAD50 ABC-ATPase; DNA d 31.7 14 0.00046 33.1 0.9 15 41-55 25-39 (149)
360 2ius_A DNA translocase FTSK; n 31.7 16 0.00053 40.1 1.6 17 39-55 167-183 (512)
361 2dr3_A UPF0273 protein PH0284; 31.6 13 0.00044 35.5 0.8 16 39-54 23-38 (247)
362 2owm_A Nckin3-434, related to 31.5 20 0.00069 38.4 2.4 22 35-56 131-154 (443)
363 2p6r_A Afuhel308 helicase; pro 31.5 93 0.0032 35.0 8.1 88 3-102 2-91 (702)
364 2ehv_A Hypothetical protein PH 31.3 13 0.00043 35.7 0.7 31 360-390 134-169 (251)
365 1znw_A Guanylate kinase, GMP k 31.1 15 0.00052 34.5 1.2 20 35-54 16-35 (207)
366 2ce7_A Cell division protein F 30.7 10 0.00036 41.1 0.0 49 3-54 14-64 (476)
367 1knx_A Probable HPR(Ser) kinas 30.7 9.3 0.00032 39.1 -0.4 50 6-55 92-164 (312)
368 3hu3_A Transitional endoplasmi 30.4 15 0.00052 39.9 1.2 16 39-54 238-253 (489)
369 1sxj_E Activator 1 40 kDa subu 29.7 30 0.001 35.1 3.3 42 360-408 133-174 (354)
370 1sxj_A Activator 1 95 kDa subu 29.7 38 0.0013 36.9 4.3 15 40-54 78-92 (516)
371 2zts_A Putative uncharacterize 29.7 14 0.00048 35.3 0.7 25 33-58 19-48 (251)
372 1tue_A Replication protein E1; 29.5 12 0.00042 35.9 0.2 47 13-62 30-80 (212)
373 1gvn_B Zeta; postsegregational 29.0 17 0.00059 36.3 1.3 14 40-53 34-47 (287)
374 2cvh_A DNA repair and recombin 28.9 15 0.00051 34.4 0.8 15 39-53 20-34 (220)
375 3lnc_A Guanylate kinase, GMP k 28.8 19 0.00063 34.4 1.4 17 38-54 26-42 (231)
376 3asz_A Uridine kinase; cytidin 28.7 17 0.00057 34.0 1.1 16 39-54 6-21 (211)
377 2qby_A CDC6 homolog 1, cell di 28.6 19 0.00065 36.7 1.6 16 39-54 45-60 (386)
378 4eun_A Thermoresistant glucoki 28.5 18 0.0006 33.7 1.2 16 38-53 28-43 (200)
379 1ye8_A Protein THEP1, hypothet 28.5 16 0.00056 33.7 0.9 29 360-388 98-128 (178)
380 1s96_A Guanylate kinase, GMP k 28.4 18 0.00061 34.7 1.2 17 37-53 14-30 (219)
381 3auy_A DNA double-strand break 28.3 17 0.00057 37.8 1.1 12 42-53 28-39 (371)
382 3hjh_A Transcription-repair-co 28.0 77 0.0026 34.2 6.3 48 253-308 16-63 (483)
383 2q6t_A DNAB replication FORK h 28.0 19 0.00065 38.5 1.4 31 33-64 190-224 (444)
384 2bdt_A BH3686; alpha-beta prot 27.8 17 0.00059 33.3 0.9 14 41-54 4-17 (189)
385 2yue_A Protein neuralized; str 27.8 21 0.00071 33.0 1.5 42 186-231 107-149 (168)
386 2l2q_A PTS system, cellobiose- 27.8 1E+02 0.0036 25.7 5.9 41 296-346 20-60 (109)
387 3t61_A Gluconokinase; PSI-biol 27.4 17 0.0006 33.7 0.9 15 40-54 19-33 (202)
388 3tif_A Uncharacterized ABC tra 27.2 17 0.00057 35.3 0.8 32 359-390 161-192 (235)
389 1kht_A Adenylate kinase; phosp 27.1 19 0.00065 32.7 1.1 16 39-54 3-18 (192)
390 2rhm_A Putative kinase; P-loop 27.0 19 0.00065 32.9 1.1 16 39-54 5-20 (193)
391 1y63_A LMAJ004144AAA protein; 27.0 20 0.00067 33.0 1.2 17 38-54 9-25 (184)
392 4ag6_A VIRB4 ATPase, type IV s 26.9 31 0.0011 35.8 2.9 17 38-54 34-50 (392)
393 3pxg_A Negative regulator of g 26.6 27 0.00093 37.5 2.4 17 38-54 200-216 (468)
394 2qt1_A Nicotinamide riboside k 26.6 11 0.00039 35.2 -0.6 21 34-54 16-36 (207)
395 2r6a_A DNAB helicase, replicat 26.6 20 0.00068 38.4 1.3 38 24-64 186-227 (454)
396 1sxj_E Activator 1 40 kDa subu 26.6 50 0.0017 33.4 4.3 40 3-54 12-51 (354)
397 3cf2_A TER ATPase, transitiona 26.5 18 0.00062 41.9 1.0 51 3-54 475-526 (806)
398 3qf7_A RAD50; ABC-ATPase, ATPa 26.5 18 0.00062 37.6 0.9 17 40-56 24-40 (365)
399 3bgw_A DNAB-like replicative h 26.5 21 0.00071 38.3 1.4 38 24-64 180-221 (444)
400 2qby_B CDC6 homolog 3, cell di 26.4 21 0.0007 36.7 1.3 16 39-54 45-60 (384)
401 1n0w_A DNA repair protein RAD5 26.3 17 0.00058 34.6 0.6 16 39-54 24-39 (243)
402 1fnn_A CDC6P, cell division co 26.3 19 0.00066 36.9 1.1 14 41-54 46-59 (389)
403 4a74_A DNA repair and recombin 26.1 16 0.00053 34.5 0.3 15 39-53 25-39 (231)
404 1knq_A Gluconate kinase; ALFA/ 26.0 17 0.0006 32.7 0.6 16 39-54 8-23 (175)
405 4a2p_A RIG-I, retinoic acid in 25.9 54 0.0018 35.3 4.7 76 20-102 3-78 (556)
406 1tev_A UMP-CMP kinase; ploop, 25.6 20 0.00068 32.7 0.9 15 40-54 4-18 (196)
407 1nks_A Adenylate kinase; therm 25.6 21 0.00071 32.5 1.1 12 42-53 4-15 (194)
408 3nwj_A ATSK2; P loop, shikimat 25.4 24 0.00081 34.7 1.5 18 37-54 46-63 (250)
409 3h1t_A Type I site-specific re 25.1 1.1E+02 0.0039 33.4 7.3 76 24-102 178-259 (590)
410 2r6a_A DNAB helicase, replicat 25.1 1E+02 0.0034 32.8 6.6 24 249-272 201-224 (454)
411 4a1f_A DNAB helicase, replicat 24.9 24 0.00081 36.4 1.4 31 32-63 35-69 (338)
412 2dhr_A FTSH; AAA+ protein, hex 24.7 9.1 0.00031 41.8 -1.9 47 3-54 29-79 (499)
413 3tqf_A HPR(Ser) kinase; transf 24.6 16 0.00055 34.1 0.1 16 38-53 15-30 (181)
414 1gm5_A RECG; helicase, replica 24.4 15 0.00051 42.5 -0.2 25 248-272 386-410 (780)
415 1zd8_A GTP:AMP phosphotransfer 24.4 22 0.00076 33.7 1.1 16 39-54 7-22 (227)
416 3dm5_A SRP54, signal recogniti 24.4 76 0.0026 33.9 5.4 23 250-272 99-121 (443)
417 3cm0_A Adenylate kinase; ATP-b 24.3 22 0.00074 32.3 0.9 16 39-54 4-19 (186)
418 1g41_A Heat shock protein HSLU 24.3 26 0.0009 37.5 1.7 16 39-54 50-65 (444)
419 2cbz_A Multidrug resistance-as 24.3 20 0.0007 34.7 0.8 27 360-386 144-170 (237)
420 1g5t_A COB(I)alamin adenosyltr 24.3 82 0.0028 29.7 5.0 52 360-418 119-172 (196)
421 1in4_A RUVB, holliday junction 24.1 23 0.00078 36.1 1.2 15 40-54 52-66 (334)
422 4h1g_A Maltose binding protein 24.0 32 0.0011 39.3 2.4 25 32-56 454-480 (715)
423 2bwj_A Adenylate kinase 5; pho 24.0 23 0.00079 32.4 1.1 16 39-54 12-27 (199)
424 4akg_A Glutathione S-transfera 23.9 22 0.00075 46.8 1.1 19 36-54 1264-1282(2695)
425 1sxj_C Activator 1 40 kDa subu 23.8 52 0.0018 33.3 3.9 37 2-53 22-60 (340)
426 1qf9_A UMP/CMP kinase, protein 23.6 24 0.00082 32.0 1.1 14 41-54 8-21 (194)
427 1cr0_A DNA primase/helicase; R 23.5 23 0.00077 35.3 1.0 16 38-53 34-49 (296)
428 2r2a_A Uncharacterized protein 23.4 23 0.00078 33.5 0.9 14 42-55 8-21 (199)
429 2pcj_A ABC transporter, lipopr 23.3 22 0.00076 34.1 0.8 32 359-390 156-187 (224)
430 2c95_A Adenylate kinase 1; tra 23.2 24 0.00084 32.2 1.1 17 38-54 8-24 (196)
431 2z4s_A Chromosomal replication 23.2 25 0.00086 37.5 1.3 15 39-53 130-144 (440)
432 1cke_A CK, MSSA, protein (cyti 23.2 23 0.0008 33.3 0.9 15 40-54 6-20 (227)
433 3fb4_A Adenylate kinase; psych 23.1 23 0.0008 33.1 0.9 12 42-53 3-14 (216)
434 1e6c_A Shikimate kinase; phosp 23.1 23 0.0008 31.6 0.9 14 41-54 4-17 (173)
435 1sgw_A Putative ABC transporte 23.0 24 0.00081 33.8 0.9 32 359-390 149-180 (214)
436 2pze_A Cystic fibrosis transme 23.0 22 0.00075 34.3 0.7 26 360-385 147-172 (229)
437 4a2w_A RIG-I, retinoic acid in 22.9 82 0.0028 37.0 5.8 78 18-102 242-319 (936)
438 1xp8_A RECA protein, recombina 22.9 29 0.001 36.1 1.7 32 32-64 61-98 (366)
439 3pvs_A Replication-associated 22.9 23 0.0008 37.9 1.0 15 40-54 51-65 (447)
440 2bbw_A Adenylate kinase 4, AK4 22.9 24 0.00081 34.0 0.9 15 39-53 27-41 (246)
441 3k1j_A LON protease, ATP-depen 22.8 35 0.0012 38.0 2.4 21 34-54 55-75 (604)
442 1nlf_A Regulatory protein REPA 22.7 23 0.00078 35.0 0.8 19 36-54 27-45 (279)
443 3cmu_A Protein RECA, recombina 22.7 17 0.00057 46.4 -0.3 41 248-293 1424-1464(2050)
444 2jaq_A Deoxyguanosine kinase; 22.7 24 0.00083 32.4 0.9 12 42-53 3-14 (205)
445 2iut_A DNA translocase FTSK; n 22.7 29 0.00099 38.5 1.6 19 39-57 214-232 (574)
446 3hr8_A Protein RECA; alpha and 22.6 34 0.0012 35.5 2.2 32 31-63 47-84 (356)
447 1a5t_A Delta prime, HOLB; zinc 22.6 35 0.0012 34.7 2.2 28 26-53 4-38 (334)
448 3uie_A Adenylyl-sulfate kinase 22.4 23 0.00079 32.9 0.7 16 38-53 24-39 (200)
449 2if2_A Dephospho-COA kinase; a 22.4 26 0.00089 32.4 1.1 13 42-54 4-16 (204)
450 1via_A Shikimate kinase; struc 22.2 25 0.00086 31.7 0.9 14 41-54 6-19 (175)
451 2ghi_A Transport protein; mult 22.2 24 0.00081 34.8 0.8 31 360-390 172-202 (260)
452 1xjc_A MOBB protein homolog; s 22.1 26 0.00088 32.3 0.9 13 42-54 7-19 (169)
453 2v9p_A Replication protein E1; 22.1 25 0.00085 35.7 0.9 16 38-53 125-140 (305)
454 2iyv_A Shikimate kinase, SK; t 22.0 26 0.00088 31.8 0.9 14 41-54 4-17 (184)
455 3kta_B Chromosome segregation 21.9 39 0.0013 31.0 2.2 40 360-405 85-124 (173)
456 1svm_A Large T antigen; AAA+ f 21.9 20 0.00068 37.6 0.2 16 38-53 168-183 (377)
457 3dl0_A Adenylate kinase; phosp 21.8 26 0.00089 32.8 0.9 12 42-53 3-14 (216)
458 1odf_A YGR205W, hypothetical 3 21.7 26 0.00088 35.2 0.9 14 41-54 33-46 (290)
459 1g6h_A High-affinity branched- 21.7 24 0.00083 34.6 0.7 31 360-390 170-200 (257)
460 3vkg_A Dynein heavy chain, cyt 21.5 29 0.001 46.3 1.6 18 36-53 1301-1318(3245)
461 2ff7_A Alpha-hemolysin translo 21.4 25 0.00084 34.4 0.7 31 359-389 161-191 (247)
462 1rz3_A Hypothetical protein rb 21.4 28 0.00096 32.4 1.1 15 40-54 23-37 (201)
463 2f1r_A Molybdopterin-guanine d 21.3 15 0.0005 33.9 -0.9 13 42-54 5-17 (171)
464 1uf9_A TT1252 protein; P-loop, 21.3 28 0.00096 32.0 1.1 13 41-53 10-22 (203)
465 1np6_A Molybdopterin-guanine d 21.3 27 0.00093 32.2 0.9 13 41-53 8-20 (174)
466 2i3b_A HCR-ntpase, human cance 21.3 30 0.001 32.3 1.2 30 359-388 103-134 (189)
467 1mv5_A LMRA, multidrug resista 21.2 22 0.00074 34.6 0.2 30 360-389 156-185 (243)
468 3qks_A DNA double-strand break 21.2 27 0.00093 32.8 0.9 16 40-55 24-39 (203)
469 1zak_A Adenylate kinase; ATP:A 21.2 28 0.00097 32.8 1.1 15 39-53 5-19 (222)
470 4a2q_A RIG-I, retinoic acid in 21.2 77 0.0026 36.4 5.0 77 19-102 243-319 (797)
471 2vli_A Antibiotic resistance p 21.2 29 0.00098 31.3 1.1 16 39-54 5-20 (183)
472 1e69_A Chromosome segregation 21.1 32 0.0011 34.8 1.6 12 42-53 27-38 (322)
473 1ukz_A Uridylate kinase; trans 21.0 28 0.00094 32.2 0.9 14 41-54 17-30 (203)
474 2cdn_A Adenylate kinase; phosp 21.0 28 0.00094 32.2 0.9 15 40-54 21-35 (201)
475 4g1u_C Hemin import ATP-bindin 20.8 25 0.00087 34.7 0.7 30 361-390 165-194 (266)
476 3gfo_A Cobalt import ATP-bindi 20.8 25 0.00086 35.0 0.6 32 359-390 159-190 (275)
477 2px0_A Flagellar biosynthesis 20.7 30 0.001 34.7 1.2 16 39-54 105-120 (296)
478 3b9q_A Chloroplast SRP recepto 20.7 28 0.00094 35.2 0.9 16 39-54 100-115 (302)
479 1xp8_A RECA protein, recombina 20.7 1.6E+02 0.0053 30.5 6.8 24 249-272 72-95 (366)
480 3u61_B DNA polymerase accessor 20.7 59 0.002 32.4 3.5 14 41-54 50-63 (324)
481 1ji0_A ABC transporter; ATP bi 20.7 26 0.00089 34.0 0.7 32 359-390 155-186 (240)
482 1b0u_A Histidine permease; ABC 20.6 27 0.00091 34.4 0.8 32 359-390 169-200 (262)
483 3qkt_A DNA double-strand break 20.5 28 0.00096 35.6 0.9 15 41-55 25-39 (339)
484 1htw_A HI0065; nucleotide-bind 20.5 24 0.00082 31.9 0.4 16 38-53 32-47 (158)
485 2pt5_A Shikimate kinase, SK; a 20.5 28 0.00097 30.9 0.9 13 42-54 3-15 (168)
486 1rj9_A FTSY, signal recognitio 20.4 30 0.001 35.0 1.1 16 39-54 102-117 (304)
487 2plr_A DTMP kinase, probable t 20.4 29 0.00099 32.0 0.9 15 39-53 4-18 (213)
488 1ak2_A Adenylate kinase isoenz 20.1 31 0.0011 32.9 1.1 16 38-53 15-30 (233)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-52 Score=461.21 Aligned_cols=302 Identities=29% Similarity=0.470 Sum_probs=261.3
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|++++|+++++++|.++||..|||+|++|||.++.|+|++++||||||||+||++|+++.+.+.. .
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~--------~--- 123 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP--------H--- 123 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC--------C---
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc--------c---
Confidence 35799999999999999999999999999999999999999999999999999999999999887610 0
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 124 -------------------------------------------------------------------------------- 123 (434)
T 2db3_A 124 -------------------------------------------------------------------------------- 123 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 124 -------------------------------------------------------------------------------- 123 (434)
T 2db3_A 124 -------------------------------------------------------------------------------- 123 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.....+|++|||+||||||.|+++.++++..... +++.+
T Consensus 124 --------------------------------------~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~ 162 (434)
T 2db3_A 124 --------------------------------------ELELGRPQVVIVSPTRELAIQIFNEARKFAFESY---LKIGI 162 (434)
T ss_dssp --------------------------------------CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS---CCCCE
T ss_pred --------------------------------------ccccCCccEEEEecCHHHHHHHHHHHHHHhccCC---cEEEE
Confidence 0012357899999999999999999999987654 88899
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||++|.+++.++.+.++++++|||||||+|++++|.+++..++..+... .+.|
T Consensus 163 ~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----~~~q 238 (434)
T 2db3_A 163 VYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----PEHQ 238 (434)
T ss_dssp ECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----SSCE
T ss_pred EECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----CCce
Confidence 999999999988899999999999999999999998999999999999999999999999999999886321 1589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHH--------------------------HH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDE--------------------------TW 454 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------~~ 454 (651)
+++||||+++ .+..++..++.++..+.+.........+.+.+..++...+. ..
T Consensus 239 ~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~ 317 (434)
T 2db3_A 239 TLMFSATFPE-EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLA 317 (434)
T ss_dssp EEEEESCCCH-HHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHH
T ss_pred EEEEeccCCH-HHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHH
Confidence 9999999997 99999999999999988887776777777766665443210 01
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..+ ++..+..++++|+.+++|||+|+|++|||||+|.+.++|+||+|||||+|+.
T Consensus 318 ~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~ 397 (434)
T 2db3_A 318 SFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNN 397 (434)
T ss_dssp HHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCC
T ss_pred HHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 111 2333556788999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeCC
Q psy8712 510 GLAISLVSTV 519 (651)
Q Consensus 510 G~ai~lv~~~ 519 (651)
|.|++|++++
T Consensus 398 G~a~~~~~~~ 407 (434)
T 2db3_A 398 GRATSFFDPE 407 (434)
T ss_dssp EEEEEEECTT
T ss_pred CEEEEEEecc
Confidence 9999999863
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-48 Score=421.90 Aligned_cols=316 Identities=29% Similarity=0.463 Sum_probs=252.8
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+++|++|++++++.++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.........
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~------- 86 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL------- 86 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH-------
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh-------
Confidence 4679999999999999999999999999999999999999999999999999999999999988662100000
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
.. ..
T Consensus 87 -------------------~~------------------------~~--------------------------------- 90 (417)
T 2i4i_A 87 -------------------RA------------------------MK--------------------------------- 90 (417)
T ss_dssp -------------------HH------------------------HH---------------------------------
T ss_pred -------------------hc------------------------cc---------------------------------
Confidence 00 00
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
.
T Consensus 91 --------------------------------------------------------------~----------------- 91 (417)
T 2i4i_A 91 --------------------------------------------------------------E----------------- 91 (417)
T ss_dssp --------------------------------------------------------------H-----------------
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.........++++|||+||++||.|+++.++.+....+ +++..
T Consensus 92 ----------------------------------~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~ 134 (417)
T 2i4i_A 92 ----------------------------------NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---VRPCV 134 (417)
T ss_dssp ----------------------------------CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEE
T ss_pred ----------------------------------ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC---ceEEE
Confidence 00000112357899999999999999999999987654 89999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||++|.+++..+.+.++++++|||||||++++++|.+.+..++...... .....|
T Consensus 135 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~--~~~~~~ 212 (417)
T 2i4i_A 135 VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP--PKGVRH 212 (417)
T ss_dssp ECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC--CBTTBE
T ss_pred EECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC--CcCCcE
Confidence 999999998888888899999999999999999988889999999999999999999999999998853321 112589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchH----------------------------H
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD----------------------------E 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~----------------------------~ 452 (651)
++++|||+++ .+..+...++.+|..+.+........++.+.+..++...+ .
T Consensus 213 ~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 291 (417)
T 2i4i_A 213 TMMFSATFPK-EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291 (417)
T ss_dssp EEEEESCCCH-HHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHH
T ss_pred EEEEEEeCCH-HHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 9999999987 8899999999999888877666666677666655543321 1
Q ss_pred HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 453 TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 453 ~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
....+ ++..+..++.+|+.+.+|||+|++++||+||+|.+..+|+||+||+||.|
T Consensus 292 l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 292 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--
T ss_pred HHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC
Confidence 11111 12234566778899999999999999999999999999999999999999
Q ss_pred CceEEEEeeeC
Q psy8712 508 RMGLAISLVST 518 (651)
Q Consensus 508 ~~G~ai~lv~~ 518 (651)
+.|.|++|+++
T Consensus 372 ~~g~~~~~~~~ 382 (417)
T 2i4i_A 372 NLGLATSFFNE 382 (417)
T ss_dssp CCEEEEEEECG
T ss_pred CCceEEEEEcc
Confidence 99999999987
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.6e-48 Score=421.62 Aligned_cols=248 Identities=29% Similarity=0.506 Sum_probs=213.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|||+||++|+.|+++.++.++.... +++..+.||.....+...+..+++|+|+||+++.+++.++.+.+.+++
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCC---eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhee
Confidence 35799999999999999999999987665 889999999999888888888999999999999999999888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV 443 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~ 443 (651)
+|||||||++++++|...+..+++.++. ..|++++|||+++ .+.++...++.+|..+.+.........+.+.+
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPP------ATQVVLISATLPH-EILEMTNKFMTDPIRILVKRDELTLEGIKQFF 254 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCT------TCEEEEEESCCCH-HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEE
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCcc------CceEEEEEcCCCH-HHHHHHHHHcCCCEEEEecCccccCCCceEEE
Confidence 9999999999999999999999998876 6899999999997 88888888999998887776666666777666
Q ss_pred EEeCcch--------------------------H--HHHHHH-------------------------hhccccceeeccc
Q psy8712 444 VKIDPQQ--------------------------D--ETWGRL-------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 444 ~~~~~~~--------------------------~--~~~~~l-------------------------~~~~~~~~l~~td 470 (651)
..++... . .....+ ++.....++.+|+
T Consensus 255 ~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 255 VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp EEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred EEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 6554432 1 011111 2223456778899
Q ss_pred cccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCC
Q psy8712 471 NARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQ 550 (651)
Q Consensus 471 ~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 550 (651)
.+.+|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-------------------------------- 382 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-------------------------------- 382 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEG--------------------------------
T ss_pred hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecH--------------------------------
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred cchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 551 VPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 551 ~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
+|...+++|+++++..+.++|.+
T Consensus 383 ------------------~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 383 ------------------DDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp ------------------GGHHHHHHHHHHTTCCCEECCSC
T ss_pred ------------------HHHHHHHHHHHHhCCCceecccc
Confidence 67889999999999999988755
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=406.93 Aligned_cols=318 Identities=29% Similarity=0.495 Sum_probs=261.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++++++.+.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~--------------- 104 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL--------------- 104 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT---------------
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh---------------
Confidence 57999999999999999999999999999999999999999999999999999999999974421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 105 -------------------------------------------------------------------------------- 104 (414)
T 3eiq_A 105 -------------------------------------------------------------------------------- 104 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 105 -------------------------------------------------------------------------------- 104 (414)
T 3eiq_A 105 -------------------------------------------------------------------------------- 104 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++||++||++|+.|+.+.++.++.... +.+..+
T Consensus 105 ---------------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~ 142 (414)
T 3eiq_A 105 ---------------------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMG---ASCHAC 142 (414)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC---CCEEEC
T ss_pred ---------------------------------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccC---ceEEEE
Confidence 01234799999999999999999999987765 888899
Q ss_pred eCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.....+...+. .+++|+|+||++|.+++..+.+.++++++|||||||++.+++|...+..++..++. +.|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~------~~~ 216 (414)
T 3eiq_A 143 IGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS------NTQ 216 (414)
T ss_dssp CCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT------TCE
T ss_pred ECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC------CCe
Confidence 99998888877766 67899999999999999998888999999999999999999999999999999876 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcch--------------------------H--H
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ--------------------------D--E 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~--------------------------~--~ 452 (651)
++++|||+++ .+..+...++.+|..+.+.........+.+.+..+.... . .
T Consensus 217 ~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 217 VVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EEEECSCCCH-HHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred EEEEEEecCH-HHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 9999999997 899999999999988887776666666666555443321 1 1
Q ss_pred HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 453 TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 453 ~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
....+ ++.....++.+|+.+.+|||+|++++||+||+|.+..+|+||+||+||.|
T Consensus 296 l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 375 (414)
T 3eiq_A 296 LTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 375 (414)
T ss_dssp HHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC----
T ss_pred HHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCC
Confidence 11111 22334567889999999999999999999999999999999999999999
Q ss_pred CceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccc
Q psy8712 508 RMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQ 587 (651)
Q Consensus 508 ~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~ 587 (651)
+.|.|++|+++ +|...+++|+++++..+.+
T Consensus 376 ~~g~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 376 RKGVAINMVTE--------------------------------------------------EDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp ---CEEEEECS--------------------------------------------------THHHHHHHHHHHTTCCCEE
T ss_pred CCceEEEEEcH--------------------------------------------------HHHHHHHHHHHHHcCCccc
Confidence 99999999998 5788899999999999998
Q ss_pred cccccc
Q psy8712 588 VDDKLE 593 (651)
Q Consensus 588 ~~~~~~ 593 (651)
++.++.
T Consensus 406 ~~~~~~ 411 (414)
T 3eiq_A 406 MPLNVA 411 (414)
T ss_dssp CCC---
T ss_pred cChhhh
Confidence 876643
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.9e-45 Score=397.13 Aligned_cols=248 Identities=29% Similarity=0.464 Sum_probs=205.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+++.++.+....+ +++..+.|+.....+...+..+++|+|+||+++.+++......+++++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~ 165 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCS 165 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCC
Confidence 34799999999999999999999987654 889999999998888777888899999999999999988888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV 443 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~ 443 (651)
+||+||||++++.+|...+..++..++. ..|++++|||++. .+..+...++.+|..+.+... .....+.+.+
T Consensus 166 ~vIiDEaH~~~~~~~~~~~~~i~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 237 (400)
T 1s2m_A 166 LFIMDEADKMLSRDFKTIIEQILSFLPP------THQSLLFSATFPL-TVKEFMVKHLHKPYEINLMEE-LTLKGITQYY 237 (400)
T ss_dssp EEEEESHHHHSSHHHHHHHHHHHTTSCS------SCEEEEEESCCCH-HHHHHHHHHCSSCEEESCCSS-CBCTTEEEEE
T ss_pred EEEEeCchHhhhhchHHHHHHHHHhCCc------CceEEEEEecCCH-HHHHHHHHHcCCCeEEEeccc-cccCCceeEE
Confidence 9999999999998899999999988876 5899999999997 888888888888876655433 2333444444
Q ss_pred -------------------------EEeCcchHH--HHHHH-------------------------hhccccceeecccc
Q psy8712 444 -------------------------VKIDPQQDE--TWGRL-------------------------RSHIQTDGVHARDN 471 (651)
Q Consensus 444 -------------------------~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~td~ 471 (651)
++|+..+.. ....+ +...+..++.+|+.
T Consensus 238 ~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (400)
T 1s2m_A 238 AFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp EECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred EEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 444332211 11111 22334567889999
Q ss_pred ccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCc
Q psy8712 472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQV 551 (651)
Q Consensus 472 ~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 551 (651)
+.+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~--------------------------------- 364 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINW--------------------------------- 364 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECG---------------------------------
T ss_pred cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEecc---------------------------------
Confidence 99999999999999999999999999999999999999999999988
Q ss_pred chhhccccccCCcccchhHHHHHHHHHHHhcCccccccccc
Q psy8712 552 PIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKL 592 (651)
Q Consensus 552 ~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~ 592 (651)
+|...++.|++.++.+++.+|..+
T Consensus 365 -----------------~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 365 -----------------NDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp -----------------GGHHHHHHHHHHHTCCCEECCSSC
T ss_pred -----------------chHHHHHHHHHHhCCCcccccccc
Confidence 577889999999999999887653
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-45 Score=420.32 Aligned_cols=255 Identities=24% Similarity=0.397 Sum_probs=198.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccC-CCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCC-CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFI-TDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGG-HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~-~l~l~ 360 (651)
++++|||+||++||.|+++.++.+.... ..+.+.+..+.||.....+...+.. +++|+|+||++|.+++.+. ...++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 4689999999999999999999986431 1124778889999998888877744 7999999999999988765 45678
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccC-CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC----CCc
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS-DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE----DAV 435 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~-~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~----~~~ 435 (651)
++++|||||||+|++++|.+++..++..++.... ...++|+++||||+++ .+..++..++.+|..+.+... ...
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHHHHHHcCCCceEEEeecCcccccc
Confidence 9999999999999999999999999887654321 1125799999999997 899999999988876654332 122
Q ss_pred cCceEE-------------------------------EEEEeCcchHH--HHHHH-------------------------
Q psy8712 436 PETVHH-------------------------------VVVKIDPQQDE--TWGRL------------------------- 457 (651)
Q Consensus 436 ~~~i~~-------------------------------~~~~~~~~~~~--~~~~l------------------------- 457 (651)
...+.+ .+++|++.... ....+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 233333 44444443211 11111
Q ss_pred ---hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccC
Q psy8712 458 ---RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRG 534 (651)
Q Consensus 458 ---~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~ 534 (651)
+...+..++++|+.+.+|||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~---------------- 397 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK---------------- 397 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG----------------
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc----------------
Confidence 1222455677899999999999999999999999999999999999999999999999998
Q ss_pred CccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 535 RNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
+|...++.|++..+..+...+
T Consensus 398 ----------------------------------~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 398 ----------------------------------DELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp ----------------------------------GGHHHHHHHHHHHCCCCCEEE
T ss_pred ----------------------------------cHHHHHHHHHHHhCCCccccc
Confidence 678889999999887776543
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.8e-45 Score=393.63 Aligned_cols=253 Identities=26% Similarity=0.466 Sum_probs=206.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
++++||++||++|+.|+.+.++++....+ ++++..+.||.....+...+.+ .++|+|+||+++.+++....+.++++
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 153 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 153 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCT--TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCC--CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 34799999999999999999999987653 4889999999988777776655 47999999999999999888889999
Q ss_pred ceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC-CccCceE
Q psy8712 363 RFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED-AVPETVH 440 (651)
Q Consensus 363 ~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~-~~~~~i~ 440 (651)
++||+||||++.++ ++...+..++..++. ..|++++|||+++ .+..+...++.+|..+.+.... .....+.
T Consensus 154 ~~vViDEaH~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (391)
T 1xti_A 154 KHFILDECDKMLEQLDMRRDVQEIFRMTPH------EKQVMMFSATLSK-EIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 226 (391)
T ss_dssp SEEEECSHHHHTSSHHHHHHHHHHHHTSCS------SSEEEEEESSCCS-THHHHHHHHCSSCEEEECCCCCCCCCTTCE
T ss_pred CEEEEeCHHHHhhccchHHHHHHHHhhCCC------CceEEEEEeeCCH-HHHHHHHHHcCCCeEEEecCccccCcccce
Confidence 99999999999884 788889999888876 6899999999997 8889999999999887765543 2333444
Q ss_pred EEE-------------------------EEeCcchHH--HHHHH-------------------------hhccccceeec
Q psy8712 441 HVV-------------------------VKIDPQQDE--TWGRL-------------------------RSHIQTDGVHA 468 (651)
Q Consensus 441 ~~~-------------------------~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~ 468 (651)
+.+ ++|+..+.. ....+ +......++.+
T Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 306 (391)
T 1xti_A 227 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 306 (391)
T ss_dssp EEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 443 444333211 11111 22334567888
Q ss_pred cccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCC
Q psy8712 469 RDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGN 548 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (651)
|+.+.+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~----------------------------- 357 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------- 357 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSH-----------------------------
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEccc-----------------------------
Confidence 999999999999999999999999999999999999999999999999872
Q ss_pred CCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccccC
Q psy8712 549 SQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEI 594 (651)
Q Consensus 549 ~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~~ 594 (651)
++...++.+++.++.++.++|.++..
T Consensus 358 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (391)
T 1xti_A 358 --------------------NDAKILNDVQDRFEVNISELPDEIDI 383 (391)
T ss_dssp --------------------HHHHHHHHHHHHTTCCCEECCSCCCG
T ss_pred --------------------chHHHHHHHHHHhcCChhhCCccccH
Confidence 56788899999999999988876543
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.5e-45 Score=397.08 Aligned_cols=247 Identities=30% Similarity=0.472 Sum_probs=200.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l 362 (651)
++++|||+||++|+.|+++.++.+..... .+++....++....... ...++|+|+||+++.+++.+ +.+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcc--cceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 45799999999999999999999987654 47778888877654332 34689999999999998865 66778999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH 441 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~ 441 (651)
++|||||||++++ .++...+..+...++. +.|++++|||+++ .+..+...++.+|..+.+.........+.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR------NCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKREEETLDTIKQ 242 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT------TCEEEEEESCCCH-HHHHHHHHHSSSCEEECCCGGGSSCTTEEE
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC------CceEEEEEeecCH-HHHHHHHHhcCCCeEEeeccccccccCceE
Confidence 9999999999997 6788888888888876 6899999999997 899999999999998888777777777766
Q ss_pred EEEEeCcc--------------------------hH--HHHHHH-------------------------hhccccceeec
Q psy8712 442 VVVKIDPQ--------------------------QD--ETWGRL-------------------------RSHIQTDGVHA 468 (651)
Q Consensus 442 ~~~~~~~~--------------------------~~--~~~~~l-------------------------~~~~~~~~l~~ 468 (651)
.+..+... .. .....+ ++..+..++.+
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 243 YYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 65554432 11 111111 22335667889
Q ss_pred cccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCccc
Q psy8712 469 RDNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQL 542 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l 542 (651)
|+.+.+|||+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.
T Consensus 323 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~----------------------- 379 (412)
T 3fht_A 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK----------------------- 379 (412)
T ss_dssp CGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH-----------------------
T ss_pred cCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh-----------------------
Confidence 9999999999999999999999 56789999999999999999999999872
Q ss_pred ccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 543 TDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
++...++.|+++++..+..++.+
T Consensus 380 --------------------------~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 380 --------------------------HSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp --------------------------HHHHHHHHHHHHHTCCCEEC---
T ss_pred --------------------------hhHHHHHHHHHHHCCccccCCCc
Confidence 56888999999999998887644
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3e-45 Score=415.70 Aligned_cols=255 Identities=24% Similarity=0.403 Sum_probs=197.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccC-CCCCeeEEEEeCCccHHHHHHHh-ccCCcEEEECchhhHHHHhCC-CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFI-TDPKIRELLIIGGVNVKDQMSVL-SSGVDIVVGTPGRMEDLISGG-HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~i~v~~l~Gg~~~~~q~~~L-~~~~dIlV~TP~rL~~ll~~~-~l~l~ 360 (651)
++++|||+||++||.|+++.++.+.... ....+.+..++||.....+...+ ..+++|+|+||++|.+++.+. ...++
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 4589999999999999999999975432 11246788899999988877766 448999999999999988765 34678
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccC-CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC----Cc
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS-DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED----AV 435 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~-~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~----~~ 435 (651)
++++|||||||++++++|.+++..++..++.... ...++|+++||||+++ .+..++..++.++..+.+.... ..
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEA 304 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHHHHHhcCCCceEEEeccCCCCccc
Confidence 9999999999999999999999998877654221 1225899999999997 8899999999887766543221 12
Q ss_pred cCceE-------------------------------EEEEEeCcchHHH--HHHH-------------------------
Q psy8712 436 PETVH-------------------------------HVVVKIDPQQDET--WGRL------------------------- 457 (651)
Q Consensus 436 ~~~i~-------------------------------~~~~~~~~~~~~~--~~~l------------------------- 457 (651)
...+. ..+++|++..... ...+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 305 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384 (563)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred cccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Confidence 22333 3455555433111 1111
Q ss_pred ---hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccC
Q psy8712 458 ---RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRG 534 (651)
Q Consensus 458 ---~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~ 534 (651)
+...+..++++|+.+.+|||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+.+
T Consensus 385 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~---------------- 448 (563)
T 3i5x_A 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK---------------- 448 (563)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG----------------
T ss_pred HHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEch----------------
Confidence 1223456778899999999999999999999999999999999999999999999999998
Q ss_pred CccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 535 RNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
+|...++.|++..+..+...+
T Consensus 449 ----------------------------------~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 449 ----------------------------------DELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ----------------------------------GGHHHHHHHHHHHCCCCCEEE
T ss_pred ----------------------------------hHHHHHHHHHHHhCCCccccc
Confidence 678889999998887776543
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=418.12 Aligned_cols=224 Identities=29% Similarity=0.450 Sum_probs=115.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l 362 (651)
++++|||+||++||.|+++.++.+..+.. .+.+....++....... ...++|+|+||++|.+++.+ +.+.++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTST--TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCC--CceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 45899999999999999999999987654 47777788876644321 34679999999999998865 56778999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH 441 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~ 441 (651)
++|||||||++++ ++|...+..+.+.++. ++|++++|||++. .+..++..++.+|..+.+.........+.+
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 309 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR------NCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKREEETLDTIKQ 309 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCT------TSEEEEEESCCCH-HHHHHHHHHSSSEEEEEEC-----------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCc------cceEEEEeCCCCH-HHHHHHHHHcCCCeEEeccccccCcCCceE
Confidence 9999999999997 6888888899888876 6899999999997 899999999999988887766555555554
Q ss_pred EEEEeC--------------------------cchHH--HH-------------------------HHHhhccccceeec
Q psy8712 442 VVVKID--------------------------PQQDE--TW-------------------------GRLRSHIQTDGVHA 468 (651)
Q Consensus 442 ~~~~~~--------------------------~~~~~--~~-------------------------~~l~~~~~~~~l~~ 468 (651)
.++.++ ..... .. ...+......++.+
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~ 389 (479)
T 3fmp_B 310 YYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 389 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 444333 22110 00 00122335667889
Q ss_pred cccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 469 RDNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
|+.+.+|||+|++++|||||+| .+..+|+||+|||||+|+.|.|++|+++.
T Consensus 390 T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 390 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 9999999999999999999999 46789999999999999999999999873
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-44 Score=387.33 Aligned_cols=221 Identities=33% Similarity=0.561 Sum_probs=180.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|||+||++|+.|+++.++.+..... +.+....++...... ..+++|+|+||+++.+++.+..+.+++++
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 147 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTK---ITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIK 147 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCC
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccC---eeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCC
Confidence 35799999999999999999999987654 777777776543322 34689999999999999998888899999
Q ss_pred eEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEE
Q psy8712 364 FFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442 (651)
Q Consensus 364 ~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~ 442 (651)
+||+||||++.+ +++...+..+...++. +.|++++|||+++ .+..+...++.++..+.+.........+.+.
T Consensus 148 ~iIiDEah~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (395)
T 3pey_A 148 IFVLDEADNMLDQQGLGDQCIRVKRFLPK------DTQLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQL 220 (395)
T ss_dssp EEEEETHHHHHHSTTHHHHHHHHHHTSCT------TCEEEEEESCCCH-HHHHHHHHHSCSCEEECCCGGGCSCTTEEEE
T ss_pred EEEEEChhhhcCccccHHHHHHHHHhCCC------CcEEEEEEecCCH-HHHHHHHHhCCCCeEEEccccccccccccEE
Confidence 999999999998 6888888889888876 6899999999997 8899999999888887776665555555555
Q ss_pred EEEe--------------------------CcchH--HHHHHH-------------------------hhccccceeecc
Q psy8712 443 VVKI--------------------------DPQQD--ETWGRL-------------------------RSHIQTDGVHAR 469 (651)
Q Consensus 443 ~~~~--------------------------~~~~~--~~~~~l-------------------------~~~~~~~~l~~t 469 (651)
+..+ +.... .....+ ++..+..++.+|
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 221 YMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300 (395)
T ss_dssp EEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred EEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 4443 33221 111111 233355678899
Q ss_pred ccccCCCCCCCCCEEEEeCCCC------ChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 470 DNARPGIDISGLPFIINMTLPD------DKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~dlP~------s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+.+.+|||+|++++||+||+|. +..+|+||+||+||.|+.|.+++++.+
T Consensus 301 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 355 (395)
T 3pey_A 301 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 355 (395)
T ss_dssp GGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECS
T ss_pred ChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEec
Confidence 9999999999999999999998 999999999999999999999999987
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-45 Score=396.85 Aligned_cols=316 Identities=30% Similarity=0.492 Sum_probs=182.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++++++++.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+..
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~--------------- 85 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 85 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------------
Confidence 46999999999999999999999999999999999999999999999999999999999974421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 86 -------------------------------------------------------------------------------- 85 (394)
T 1fuu_A 86 -------------------------------------------------------------------------------- 85 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 86 -------------------------------------------------------------------------------- 85 (394)
T 1fuu_A 86 -------------------------------------------------------------------------------- 85 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++||++||++|+.|+++.++.+....+ +++..+
T Consensus 86 ---------------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~ 123 (394)
T 1fuu_A 86 ---------------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHAC 123 (394)
T ss_dssp ---------------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEE
T ss_pred ---------------------------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC---eeEEEE
Confidence 01245799999999999999999999887654 889999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.|+.....+...+. +++|+|+||+++.+.+..+.+.+.++++||+||||++.+++|...+..++..++. ..|+
T Consensus 124 ~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~------~~~~ 196 (394)
T 1fuu_A 124 IGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------TTQV 196 (394)
T ss_dssp CSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------TCEE
T ss_pred eCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC------CceE
Confidence 99998877666555 5899999999999999988888899999999999999999999999999999876 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE--------------------------EEEEeCcchH--HH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH--------------------------VVVKIDPQQD--ET 453 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~--------------------------~~~~~~~~~~--~~ 453 (651)
+++|||+++ .+.++...++.+|..+.+.........+.+ .+++|+..+. ..
T Consensus 197 i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 197 VLLSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp EEECSSCCH-HHHHHHHHHCCSCEEEEECC--------------------------------------------------
T ss_pred EEEEEecCH-HHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHH
Confidence 999999997 888888889888887766554433333332 2333333221 00
Q ss_pred HHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 454 WGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 454 ~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
...+ +......++.+|+.+.+|+|+|++++||+||+|.+..+|+||+||+||.|+
T Consensus 276 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 276 TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 0000 122345677889999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|.|++++++ +|...++.|+++++.++..+
T Consensus 356 ~g~~~~~~~~--------------------------------------------------~~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 356 KGVAINFVTN--------------------------------------------------EDVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEch--------------------------------------------------hHHHHHHHHHHHhCCccccc
Confidence 9999999987 46667888889888888877
Q ss_pred cccc
Q psy8712 589 DDKL 592 (651)
Q Consensus 589 ~~~~ 592 (651)
+.++
T Consensus 386 ~~~~ 389 (394)
T 1fuu_A 386 PSDI 389 (394)
T ss_dssp ----
T ss_pred Ccch
Confidence 7543
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-43 Score=375.40 Aligned_cols=241 Identities=31% Similarity=0.494 Sum_probs=197.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+.+.++.+..... +++..+.|+.....+...+. +++|+|+||+++.+++..+.+.+.+++
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~ 149 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKN---LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVK 149 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSC---CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCC---ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCC
Confidence 34799999999999999999999876544 88899999998877766665 689999999999999998888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE--
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH-- 441 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~-- 441 (651)
++|+||||.+.+++|...+..++..++. ..|++++|||+++ .+..+...++.++..+...... .+.+
T Consensus 150 ~iIiDEah~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 218 (367)
T 1hv8_A 150 YFILDEADEMLNMGFIKDVEKILNACNK------DKRILLFSATMPR-EILNLAKKYMGDYSFIKAKINA----NIEQSY 218 (367)
T ss_dssp EEEEETHHHHHTTTTHHHHHHHHHTSCS------SCEEEEECSSCCH-HHHHHHHHHCCSEEEEECCSSS----SSEEEE
T ss_pred EEEEeCchHhhhhchHHHHHHHHHhCCC------CceEEEEeeccCH-HHHHHHHHHcCCCeEEEecCCC----CceEEE
Confidence 9999999999999999999999988876 6899999999997 7888888888777665543322 2222
Q ss_pred ----------------------EEEEeCcchHH--HHHHH-------------------------hhccccceeeccccc
Q psy8712 442 ----------------------VVVKIDPQQDE--TWGRL-------------------------RSHIQTDGVHARDNA 472 (651)
Q Consensus 442 ----------------------~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~td~~ 472 (651)
.+++|+..+.. ....+ +...+..++.+|+.+
T Consensus 219 ~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 298 (367)
T 1hv8_A 219 VEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVM 298 (367)
T ss_dssp EECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTH
T ss_pred EEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 34445443211 11111 223355678889999
Q ss_pred cCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcc
Q psy8712 473 RPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVP 552 (651)
Q Consensus 473 ~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 552 (651)
.+|+|+|++++||+|++|.+..+|+||+||+||.|+.|.+++++++
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~---------------------------------- 344 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINR---------------------------------- 344 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECT----------------------------------
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcH----------------------------------
Confidence 9999999999999999999999999999999999999999999987
Q ss_pred hhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 553 IFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 553 ~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
+|...++.|++.++.++..++
T Consensus 345 ----------------~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 345 ----------------REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ----------------TSHHHHHHHHHHHTCCCCCBC
T ss_pred ----------------HHHHHHHHHHHHhCCCCceec
Confidence 577889999999999887664
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-41 Score=357.97 Aligned_cols=219 Identities=27% Similarity=0.417 Sum_probs=179.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++||++|+.|+++.++++....+ +++..+.|+.....+...+.+ ++|+|+||+++.+++..+.+.+.+++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYMD---TKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcC---CcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEE
Confidence 589999999999999999999987665 888999999988877766654 8999999999999998888888999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEE-
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV- 444 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~- 444 (651)
|+||||++.++++...+..++..++. ..+++++|||+++ .+......++.++..+... ....++.+.++
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~------~~~~~~~SAT~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 203 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSN------RKITGLFSATIPE-EIRKVVKDFITNYEEIEAC---IGLANVEHKFVH 203 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTT------CSEEEEEESCCCH-HHHHHHHHHSCSCEEEECS---GGGGGEEEEEEE
T ss_pred EEEChHHhhccccHHHHHHHHhhCCc------ccEEEEEeCcCCH-HHHHHHHHhcCCceeeecc---cccCCceEEEEE
Confidence 99999999999999999999998876 5899999999997 8888888888887665432 22333444333
Q ss_pred ----------------------EeCcchH-----------------------HHHHHHhhccccceeeccccccCCCCCC
Q psy8712 445 ----------------------KIDPQQD-----------------------ETWGRLRSHIQTDGVHARDNARPGIDIS 479 (651)
Q Consensus 445 ----------------------~~~~~~~-----------------------~~~~~l~~~~~~~~l~~td~~~rGIDip 479 (651)
+++..+. ......+...+..++.+|+.+.+|+|+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~ 283 (337)
T 2z0m_A 204 VKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIP 283 (337)
T ss_dssp CSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCC
T ss_pred eChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCcc
Confidence 3333221 1111112334567788999999999999
Q ss_pred CCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 480 GLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 480 ~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
++++||+||+|.+..+|+||+||+||.|+.|.|++++..
T Consensus 284 ~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 284 LVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp CBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred CCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEeC
Confidence 999999999999999999999999999999999999983
No 15
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.7e-40 Score=358.85 Aligned_cols=221 Identities=16% Similarity=0.238 Sum_probs=163.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---HHHHHHhccC-CcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---KDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+||++||.|+++.++.++. . ++++..++||.+. ..+...+..+ ++|+|+||+++.+++.. +.++
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~---~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~ 138 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-E---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 138 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-S---SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-C---CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccc
Confidence 4799999999999999999999876 3 4899999999988 5666677666 99999999999988764 6678
Q ss_pred CcceEeeccchhhh----------h-ccchHH-HHHHHhcCC-----CccCCCCceeEEEEeec-cChHHHH-HHHHHhc
Q psy8712 361 HCRFFVLDEADGLL----------K-QGYGNL-IDRMHKQIP-----KITSDGKRLQMIVCSAT-LHDFDVK-KMAERLM 421 (651)
Q Consensus 361 ~l~~lViDEaD~ll----------~-~gf~~~-i~~il~~lp-----~~~~~~~~~Q~l~~SAT-l~~~~v~-~l~~~~l 421 (651)
++++|||||||++. + ++|.++ +..++..++ ...+...+.|++++||| .+. .+. .+...++
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~-~~~~~~~~~~~ 217 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPR-GIRPLLFRDLL 217 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCC-SSTTHHHHHHH
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcc-hhHHHHHHHhh
Confidence 99999999997665 4 778888 788887764 10111126899999999 453 443 3333333
Q ss_pred cCCeEEEccCCCCccCceEE---------------------EEEEeCcchHH--HHHHH--------------------h
Q psy8712 422 YFPTWVDLKGEDAVPETVHH---------------------VVVKIDPQQDE--TWGRL--------------------R 458 (651)
Q Consensus 422 ~~p~~i~~~~~~~~~~~i~~---------------------~~~~~~~~~~~--~~~~l--------------------~ 458 (651)
. +.+........++.+ .+++|+..... ....+ +
T Consensus 218 ~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f 293 (414)
T 3oiy_A 218 N----FTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDF 293 (414)
T ss_dssp S----CCSSCCCCCCCSEEEEEESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHH
T ss_pred c----cCcCccccccccchheeeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHH
Confidence 2 122222233333433 44555543321 11111 2
Q ss_pred hccccceeec----cccccCCCCCCC-CCEEEEeCCC--CChhhhhhhcCccccCC----CceEEEEee
Q psy8712 459 SHIQTDGVHA----RDNARPGIDISG-LPFIINMTLP--DDKANYVHRIGRVGRAE----RMGLAISLV 516 (651)
Q Consensus 459 ~~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP--~s~~~YihRiGR~GR~g----~~G~ai~lv 516 (651)
+..+..++++ |+.+.+|||+|+ |++|||||+| .+..+|+||+||+||.| +.|.+++|+
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 2234567889 999999999999 9999999999 99999999999999998 589999998
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-40 Score=370.91 Aligned_cols=222 Identities=32% Similarity=0.508 Sum_probs=154.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|||+|+++|+.|+++.++.+..... +.+....++...... ..+++|+|+||+++.+++..+.+.+++++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~ 261 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTE---VKTAFGIKDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQLDARDIK 261 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSS---CCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccC---eeEEEEeCCcccccc----cCCCCEEEECHHHHHHHHHcCCccccCCC
Confidence 35799999999999999999999876554 665555555443222 33689999999999999998888899999
Q ss_pred eEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE-
Q psy8712 364 FFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH- 441 (651)
Q Consensus 364 ~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~- 441 (651)
+|||||||++.+ .++...+..+...++. +.|++++|||+++ .+..+...++.++..+.+.........+.+
T Consensus 262 lIIiDEaH~~~~~~~~~~~~~~i~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 334 (508)
T 3fho_A 262 VFVLDEADNMLDQQGLGDQSMRIKHLLPR------NTQIVLFSATFSE-RVEKYAERFAPNANEIRLKTEELSVEGIKQL 334 (508)
T ss_dssp EEEECCHHHHTTC--CHHHHHHHHHHSCT------TCEEEEEESCCST-HHHHHHHHHSTTCEEECCCCCC----CCCCE
T ss_pred EEEEechhhhcccCCcHHHHHHHHHhCCc------CCeEEEEeCCCCH-HHHHHHHHhcCCCeEEEeccccCCcccceEE
Confidence 999999999998 6788889999998886 6899999999987 899999999988887776655544444433
Q ss_pred -------------------------EEEEeCcchH--HHHHHH-------------------------hhccccceeecc
Q psy8712 442 -------------------------VVVKIDPQQD--ETWGRL-------------------------RSHIQTDGVHAR 469 (651)
Q Consensus 442 -------------------------~~~~~~~~~~--~~~~~l-------------------------~~~~~~~~l~~t 469 (651)
.+++|+.... .....+ +......++.+|
T Consensus 335 ~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT 414 (508)
T 3fho_A 335 YMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT 414 (508)
T ss_dssp EEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC
T ss_pred EEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeC
Confidence 3444443321 111111 222345667789
Q ss_pred ccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 470 DNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+.+.+|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.
T Consensus 415 ~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 415 NVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp C-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999999999999 88999999999999999999999999863
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.5e-39 Score=366.06 Aligned_cols=219 Identities=17% Similarity=0.202 Sum_probs=159.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h---ccCCcEEEECchhhH------HHHh
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L---SSGVDIVVGTPGRME------DLIS 353 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L---~~~~dIlV~TP~rL~------~ll~ 353 (651)
++|||+|+++|+.|+.+.++.++ +++..+.|+.+..++... + ...++|+|+||++|. +.+.
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQLG-------ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHT-------CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred cEEEEeCHHHHHHHHHHHHHhcC-------CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 68999999999999999999873 788889998876655432 2 357899999999874 2232
Q ss_pred CCCcccCCcceEeeccchhhhhcc--chHHHHH---HHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEE
Q psy8712 354 GGHLSLTHCRFFVLDEADGLLKQG--YGNLIDR---MHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVD 428 (651)
Q Consensus 354 ~~~l~l~~l~~lViDEaD~ll~~g--f~~~i~~---il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~ 428 (651)
....+.++.+|||||||++++|| |.+++.. +...+| +.|++++|||+++ .+...+..++..+..+.
T Consensus 159 -~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~-------~~~ii~lSAT~~~-~v~~~i~~~l~~~~~~~ 229 (591)
T 2v1x_A 159 -KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------NASLIGLTATATN-HVLTDAQKILCIEKCFT 229 (591)
T ss_dssp -HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT-------TSEEEEEESSCCH-HHHHHHHHHTTCCSCEE
T ss_pred -hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC-------CCcEEEEecCCCH-HHHHHHHHHhCCCCcEE
Confidence 24457889999999999999988 7777654 333444 4799999999997 66666665554332111
Q ss_pred ccCCCCccCce----------------------------EEEEEEeCcchHH--HHHHH---------------------
Q psy8712 429 LKGEDAVPETV----------------------------HHVVVKIDPQQDE--TWGRL--------------------- 457 (651)
Q Consensus 429 ~~~~~~~~~~i----------------------------~~~~~~~~~~~~~--~~~~l--------------------- 457 (651)
+... ....++ ...+++|++.+.. ....|
T Consensus 230 ~~~~-~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~ 308 (591)
T 2v1x_A 230 FTAS-FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308 (591)
T ss_dssp EECC-CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EecC-CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHH
Confidence 1110 111111 3455666554321 11111
Q ss_pred ----hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 458 ----RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 458 ----~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+......++++|+.+.+|||+|+|++|||||+|.+.++|+||+||+||+|+.|.|++|+++.|.
T Consensus 309 ~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 309 VHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp HHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred HHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 2333556788999999999999999999999999999999999999999999999999987543
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.9e-39 Score=360.91 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=158.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h-ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L-SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L-~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+|||+|+++|+.|+.+.++.++ +++..+.++......... + ...++|+|+||+++........+...+
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~ 139 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQANG-------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWN 139 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSC
T ss_pred CEEEECChHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCC
Confidence 58999999999999999998764 778888888776554322 2 346899999999985322222334578
Q ss_pred cceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEccCCCCc
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDLKGEDAV 435 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~~~~~~~ 435 (651)
+.+|||||||++++|| |.+.+..+ ...+| +.+++++|||+++....++.+.+ +.+|..+. ... .
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~--~ 209 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------TLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF--D 209 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCC--C
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCC--C
Confidence 9999999999999987 77765544 44444 37999999999974445555554 24443332 211 1
Q ss_pred cCceE-----------------------EEEEEeCcchHH--HHHHH-------------------------hhccccce
Q psy8712 436 PETVH-----------------------HVVVKIDPQQDE--TWGRL-------------------------RSHIQTDG 465 (651)
Q Consensus 436 ~~~i~-----------------------~~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~ 465 (651)
..++. ..+++|++.+.. ....+ +...+..+
T Consensus 210 r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 289 (523)
T 1oyw_A 210 RPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQI 289 (523)
T ss_dssp CTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 12222 345555554321 11111 23335677
Q ss_pred eeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
+++|+.+.+|||+|+|++|||||+|.+.++|+||+||+||.|+.|.|++|++++|..
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 889999999999999999999999999999999999999999999999999886544
No 19
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.7e-38 Score=317.03 Aligned_cols=214 Identities=28% Similarity=0.454 Sum_probs=193.1
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|+++++++++.++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+....
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~------------ 95 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP------------ 95 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC------------
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc------------
Confidence 35799999999999999999999999999999999999999999999999999999999998775400
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (242)
T 3fe2_A 96 -------------------------------------------------------------------------------- 95 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (242)
T 3fe2_A 96 -------------------------------------------------------------------------------- 95 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
......++++|||+||++|+.|+++.++.+....+ +++..
T Consensus 96 -------------------------------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~ 135 (242)
T 3fe2_A 96 -------------------------------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR---LKSTC 135 (242)
T ss_dssp -------------------------------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEE
T ss_pred -------------------------------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC---ceEEE
Confidence 00012356899999999999999999999988765 89999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||+++.+++..+.+.++++++|||||||++++++|.+.+..+++.++. +.|
T Consensus 136 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~------~~q 209 (242)
T 3fe2_A 136 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP------DRQ 209 (242)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS------SCE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc------cce
Confidence 99999999998889899999999999999999988889999999999999999999999999999999976 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCC
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~ 433 (651)
+++||||+++ .+.++++.++++|..|.+...+
T Consensus 210 ~~~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 210 TLMWSATWPK-EVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp EEEEESCCCH-HHHHHHHHHCSSCEEEEECC--
T ss_pred EEEEEeecCH-HHHHHHHHHCCCCEEEEecCCC
Confidence 9999999997 9999999999999999887653
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.3e-38 Score=359.15 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=164.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Cc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l 357 (651)
++++||+||++||.|+++++..+.++++ +++.+++||.+...+.. ..++||+||||++| .+++... .+
T Consensus 125 ~~vlVltptreLA~qd~e~~~~l~~~lg---l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l 199 (844)
T 1tf5_A 125 KGVHVVTVNEYLASRDAEQMGKIFEFLG---LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQM 199 (844)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhh
Confidence 3699999999999999999999999886 99999999988755433 34799999999999 6665533 46
Q ss_pred ccCCcceEeeccchhhh-hcc---------------chHHHHHHHhcCCC---ccCCCCceeEE----------------
Q psy8712 358 SLTHCRFFVLDEADGLL-KQG---------------YGNLIDRMHKQIPK---ITSDGKRLQMI---------------- 402 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll-~~g---------------f~~~i~~il~~lp~---~~~~~~~~Q~l---------------- 402 (651)
.++.+.++||||||.|| +.+ |.+++..|+..++. +.-+....|++
T Consensus 200 ~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~ 279 (844)
T 1tf5_A 200 VQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGID 279 (844)
T ss_dssp CCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCS
T ss_pred cccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcc
Confidence 68999999999999998 664 77899999999973 11112257888
Q ss_pred -EEeeccCh--HHHHHH--HHHhcc-CCeEE------------------------------------EccCCCCccCceE
Q psy8712 403 -VCSATLHD--FDVKKM--AERLMY-FPTWV------------------------------------DLKGEDAVPETVH 440 (651)
Q Consensus 403 -~~SATl~~--~~v~~l--~~~~l~-~p~~i------------------------------------~~~~~~~~~~~i~ 440 (651)
+||||++. ..+... +..++. +..++ .+..+..+..+|.
T Consensus 280 ~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It 359 (844)
T 1tf5_A 280 NLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATIT 359 (844)
T ss_dssp CTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEE
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceee
Confidence 99999863 133332 222332 22111 0111110111111
Q ss_pred --------------------------------------------------------------------------EEEEEe
Q psy8712 441 --------------------------------------------------------------------------HVVVKI 446 (651)
Q Consensus 441 --------------------------------------------------------------------------~~~~~~ 446 (651)
.++++|
T Consensus 360 ~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft 439 (844)
T 1tf5_A 360 FQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGT 439 (844)
T ss_dssp HHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 123333
Q ss_pred CcchHHH--HHHH-----------------------hhccccceeeccccccCCCCCC--------CCCEEEEeCCCCCh
Q psy8712 447 DPQQDET--WGRL-----------------------RSHIQTDGVHARDNARPGIDIS--------GLPFIINMTLPDDK 493 (651)
Q Consensus 447 ~~~~~~~--~~~l-----------------------~~~~~~~~l~~td~~~rGIDip--------~v~~VIn~dlP~s~ 493 (651)
.+.+... ...| ..+....++++||.+.||+||+ ++.+|||||+|.+.
T Consensus 440 ~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~ 519 (844)
T 1tf5_A 440 VAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESR 519 (844)
T ss_dssp SCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCH
Confidence 3322111 1111 1111335567899999999999 88899999999999
Q ss_pred hhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 494 ANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 494 ~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
+.|+||+|||||+|++|.+++|++.+|...
T Consensus 520 r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~ 549 (844)
T 1tf5_A 520 RIDNQLRGRSGRQGDPGITQFYLSMEDELM 549 (844)
T ss_dssp HHHHHHHTTSSGGGCCEEEEEEEETTSSGG
T ss_pred HHHHhhcCccccCCCCCeEEEEecHHHHHH
Confidence 999999999999999999999999877543
No 21
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=323.83 Aligned_cols=136 Identities=32% Similarity=0.464 Sum_probs=120.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l 362 (651)
+|++|||+|||+||.|+++.++.+..+.. .+++..++||....... ..+++|+|+||++|.+++.+ +.+.++++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCC--CcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 56899999999999999999999987654 48888889887754432 45789999999999999966 67789999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
++|||||||+|++ .+|...+..|++.++. ++|+++||||+++ .+..+++.++.+|..|.+..
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~------~~q~i~~SAT~~~-~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR------NCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT------TCEEEEEESCCCH-HHHHHHHHHSSSCEEEEECC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC------CCEEEEEeccCCH-HHHHHHHHHCCCCeEEEecC
Confidence 9999999999998 6899999999999987 6899999999997 99999999999999998764
No 22
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.5e-37 Score=311.57 Aligned_cols=231 Identities=29% Similarity=0.508 Sum_probs=190.3
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..... ..
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~------~~--- 92 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDL------NQ--- 92 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----------
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcc------cc---
Confidence 457999999999999999999999999999999999999999999999999999999999997754000 00
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 93 -------------------------------------------------------------------------------- 92 (253)
T 1wrb_A 93 -------------------------------------------------------------------------------- 92 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
+
T Consensus 93 ---------------------~---------------------------------------------------------- 93 (253)
T 1wrb_A 93 ---------------------Q---------------------------------------------------------- 93 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------c----------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
......++++|||+||++|+.|+++.++.+..... +++..
T Consensus 94 -------------------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~ 133 (253)
T 1wrb_A 94 -------------------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP---LRSCV 133 (253)
T ss_dssp ----------------------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEE
T ss_pred -------------------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCC---ceEEE
Confidence 00012346899999999999999999999987654 88899
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+.||.....+...+..+++|+|+||+++.+++..+.+.++++++||+||||++++++|.+++..++..+... ...+.|
T Consensus 134 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~--~~~~~q 211 (253)
T 1wrb_A 134 VYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP--SGINRQ 211 (253)
T ss_dssp ECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC--CGGGCE
T ss_pred EECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCC--CCCCcE
Confidence 999999888888888899999999999999999988889999999999999999999999999999864321 112589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEE
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~ 442 (651)
+++||||+++ .+.++++.++.+|..|.+.......++|+|.
T Consensus 212 ~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 212 TLMFSATFPK-EIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp EEEEESSCCH-HHHHHHHHHCSSCEEEEEC------------
T ss_pred EEEEEEeCCH-HHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999997 9999999999999999998887777888775
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.4e-37 Score=370.71 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=141.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---HHHHHHhccC-CcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---KDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+||++||.|+++.++.++ .. ++++..++||.+. ..+...+.++ ++|+|+||++|.+++.. +.++
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~-~~---~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~ 195 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA-DE---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 195 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS-CT---TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTS
T ss_pred CeEEEEechHHHHHHHHHHHHHhh-CC---CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hccc
Confidence 479999999999999999999977 33 4899999999987 6677777776 99999999999988774 7788
Q ss_pred CcceEeeccchh----------hhh-ccchHH-HHHHHhcCC-----CccCCCCceeEEEEeeccChHHHH-HHHHHhcc
Q psy8712 361 HCRFFVLDEADG----------LLK-QGYGNL-IDRMHKQIP-----KITSDGKRLQMIVCSATLHDFDVK-KMAERLMY 422 (651)
Q Consensus 361 ~l~~lViDEaD~----------ll~-~gf~~~-i~~il~~lp-----~~~~~~~~~Q~l~~SATl~~~~v~-~l~~~~l~ 422 (651)
++++|||||||+ +++ +||.++ +..+++.+| ...+...+.|+++||||+.+..+. .+...++.
T Consensus 196 ~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~ 275 (1104)
T 4ddu_A 196 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 275 (1104)
T ss_dssp CCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC
T ss_pred CcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee
Confidence 999999999964 556 899888 888888766 000111268999999994332444 23333322
Q ss_pred CCeEEEccCCCCccCceEE---------------------EEEEeCcchHH--HHH--------------------HHhh
Q psy8712 423 FPTWVDLKGEDAVPETVHH---------------------VVVKIDPQQDE--TWG--------------------RLRS 459 (651)
Q Consensus 423 ~p~~i~~~~~~~~~~~i~~---------------------~~~~~~~~~~~--~~~--------------------~l~~ 459 (651)
+.+......+.++.+ .+++|++.... ... ..+.
T Consensus 276 ----i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~l~~F~ 351 (1104)
T 4ddu_A 276 ----FTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK 351 (1104)
T ss_dssp ----CCCCBCCCCCCCEEEEEESCCCHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHHHHHHH
T ss_pred ----EEeccCCCCcCCceeEEEecCHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHHHHHHH
Confidence 333333334444444 34455443311 111 1122
Q ss_pred ccccceeec----cccccCCCCCCC-CCEEEEeCCCC
Q psy8712 460 HIQTDGVHA----RDNARPGIDISG-LPFIINMTLPD 491 (651)
Q Consensus 460 ~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP~ 491 (651)
..+..++++ |+.++||||+|+ |++|||||+|.
T Consensus 352 ~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 352 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 335667889 999999999999 99999999998
No 24
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.6e-37 Score=368.49 Aligned_cols=228 Identities=18% Similarity=0.186 Sum_probs=162.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCe----eEEEEeCCccHHH---HHHHhccCCcEEEECchhhHHHHhCCCc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKI----RELLIIGGVNVKD---QMSVLSSGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i----~v~~l~Gg~~~~~---q~~~L~~~~dIlV~TP~rL~~ll~~~~l 357 (651)
+++|||+||++||.|+++.++.+....+ + ++.+++||.+... +...+.+ ++|+|+||++|.+++.+
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~---i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~--- 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAG---VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE--- 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTC---CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcC---CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---
Confidence 4799999999999999999999987764 6 8999999988766 3455666 99999999999998775
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCcc-----CCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKIT-----SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~-----~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~ 432 (651)
++++++|||||||+|++ +.+++..++..+.... ....+.|++++|||+++ . ..+...++.++..+.+...
T Consensus 173 -L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~-~-~~~~~~~~~~~~~i~v~~~ 247 (1054)
T 1gku_B 173 -LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATA-K-KGKKAELFRQLLNFDIGSS 247 (1054)
T ss_dssp -SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCS-C-CCTTHHHHHHHHCCCCSCC
T ss_pred -hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCC-c-hhHHHHHhhcceEEEccCc
Confidence 67999999999999998 5677888887774210 00125799999999987 4 5444444433322222222
Q ss_pred CCccCceE---------------------EEEEEeCcchHHH--HHHH-------------------hhccccceeec--
Q psy8712 433 DAVPETVH---------------------HVVVKIDPQQDET--WGRL-------------------RSHIQTDGVHA-- 468 (651)
Q Consensus 433 ~~~~~~i~---------------------~~~~~~~~~~~~~--~~~l-------------------~~~~~~~~l~~-- 468 (651)
.....++. ..+++|++..... ...+ ++.....++++
T Consensus 248 ~~~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTa 327 (1054)
T 1gku_B 248 RITVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTA 327 (1054)
T ss_dssp EECCCCEEEEEESCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEEC
T ss_pred ccCcCCceEEEechhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHHcCCCcEEEEec
Confidence 22222222 3566666654221 1111 22334577889
Q ss_pred --cccccCCCCCCCC-CEEEEeCCC-------------------------------------------------------
Q psy8712 469 --RDNARPGIDISGL-PFIINMTLP------------------------------------------------------- 490 (651)
Q Consensus 469 --td~~~rGIDip~v-~~VIn~dlP------------------------------------------------------- 490 (651)
|+.+.+|||+|+| ++|||||+|
T Consensus 328 s~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (1054)
T 1gku_B 328 HYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKE 407 (1054)
T ss_dssp C------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTS
T ss_pred CCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999995 999999999
Q ss_pred ----------------CChhhhhhhcCccccCCCceE--EEEeeeCCccccc
Q psy8712 491 ----------------DDKANYVHRIGRVGRAERMGL--AISLVSTVPEKVW 524 (651)
Q Consensus 491 ----------------~s~~~YihRiGR~GR~g~~G~--ai~lv~~~de~~~ 524 (651)
.+..+|+||+|||||.|+.|. +++++...+...+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~ 459 (1054)
T 1gku_B 408 RPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELL 459 (1054)
T ss_dssp CCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHH
T ss_pred cccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHH
Confidence 789999999999999988874 8888877655543
No 25
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=303.33 Aligned_cols=205 Identities=34% Similarity=0.574 Sum_probs=187.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+...
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------------- 108 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-------------- 108 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------------
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------------
Confidence 479999999999999999999999999999999999999999999999999999999999877550
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 109 -------------------------------------------------------------------------------- 108 (249)
T 3ber_A 109 -------------------------------------------------------------------------------- 108 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 109 -------------------------------------------------------------------------------- 108 (249)
T 3ber_A 109 -------------------------------------------------------------------------------- 108 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..++++|||+||++|+.|+++.++.+....+ +++..+
T Consensus 109 ----------------------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~---~~~~~~ 145 (249)
T 3ber_A 109 ----------------------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVI 145 (249)
T ss_dssp ----------------------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEEE
T ss_pred ----------------------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCC---eeEEEE
Confidence 1234799999999999999999999987665 889999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.....+...+.++++|+|+||+++.+++.+ +.+.++++++|||||||++++++|...+..+++.++. +.|
T Consensus 146 ~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~------~~~ 219 (249)
T 3ber_A 146 VGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR------DRK 219 (249)
T ss_dssp CTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS------SSE
T ss_pred ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC------CCe
Confidence 999998888888888999999999999998875 5677899999999999999999999999999999886 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++++|||+++ .+.++++.++++|..|.+.
T Consensus 220 ~l~~SAT~~~-~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 220 TFLFSATMTK-KVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEEEESSCCH-HHHHHHHHHCSSCEEEECC
T ss_pred EEEEeccCCH-HHHHHHHHHCCCCEEEEec
Confidence 9999999997 9999999999999888764
No 26
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=301.67 Aligned_cols=209 Identities=29% Similarity=0.481 Sum_probs=179.9
Q ss_pred ccccc-CCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEE-MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~-l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
..|++ ++++|+++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+......
T Consensus 19 ~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---------- 88 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---------- 88 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------------
T ss_pred hhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch----------
Confidence 57888 8999999999999999999999999999999999999999999999999999999866431000
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (228)
T 3iuy_A 89 -------------------------------------------------------------------------------- 88 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (228)
T 3iuy_A 89 -------------------------------------------------------------------------------- 88 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.....++++|||+||++||.|+++.++.+.. .++++..
T Consensus 89 --------------------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~ 126 (228)
T 3iuy_A 89 --------------------------------------REQRNGPGMLVLTPTRELALHVEAECSKYSY----KGLKSIC 126 (228)
T ss_dssp ------------------------------------------CCCSEEEECSSHHHHHHHHHHHHHHCC----TTCCEEE
T ss_pred --------------------------------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhcc----cCceEEE
Confidence 0012356899999999999999999999862 2488999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||+++.+++....+.++++++|||||||++++++|...+..++..++. +.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~------~~~ 200 (228)
T 3iuy_A 127 IYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP------DRQ 200 (228)
T ss_dssp ECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS------SCE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc------CCe
Confidence 99999988888888889999999999999999998888999999999999999999999999999999876 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
++++|||+++ .+.+++..++++|..|.+
T Consensus 201 ~l~~SAT~~~-~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 201 TVMTSATWPD-TVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEEEESCCCH-HHHHHHHTTCSSCEEEEC
T ss_pred EEEEEeeCCH-HHHHHHHHHCCCCEEEeC
Confidence 9999999997 999999999999987754
No 27
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-36 Score=301.56 Aligned_cols=209 Identities=33% Similarity=0.550 Sum_probs=186.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|+++|++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~--------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP--------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---------------
Confidence 46999999999999999999999999999999999999999999999999999999999984421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (219)
T 1q0u_A 69 -------------------------------------------------------------------------------- 68 (219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (219)
T 1q0u_A 69 -------------------------------------------------------------------------------- 68 (219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCC-CeeEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDP-KIRELL 320 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~-~i~v~~ 320 (651)
...++++|||+||++|+.|+++.++++....... ++++..
T Consensus 69 ---------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 109 (219)
T 1q0u_A 69 ---------------------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARC 109 (219)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEE
T ss_pred ---------------------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEE
Confidence 0123579999999999999999999998765211 378889
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.+...+...+..+++|+|+||+++.+++.++.+.++++++|||||||++++++|...+..++..++. +.|
T Consensus 110 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------~~~ 183 (219)
T 1q0u_A 110 LIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------DLQ 183 (219)
T ss_dssp ECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT------TCE
T ss_pred EeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc------ccE
Confidence 99999888777777778999999999999999988888999999999999999999999999999999986 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
++++|||+++ ++.++++.++++|..+.+..
T Consensus 184 ~l~~SAT~~~-~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 184 MLVFSATIPE-KLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEEEESCCCG-GGHHHHHHHCSSCEEEECC-
T ss_pred EEEEecCCCH-HHHHHHHHHcCCCeEEEeec
Confidence 9999999997 99999999999999887653
No 28
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.4e-36 Score=293.24 Aligned_cols=135 Identities=33% Similarity=0.509 Sum_probs=123.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+++.++.+....+ ++++..+.|+.....+...+.++++|+|+||+++.+++.++...+++++
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 148 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMG--GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQ 148 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSS--SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcC--CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCC
Confidence 35799999999999999999999987653 4888999999998888888888999999999999999998888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i 427 (651)
+||+||||++++.+|...+..++..++. +.|++++|||+++ .+.++++.++.+|..|
T Consensus 149 ~lViDEah~~~~~~~~~~l~~i~~~~~~------~~~~l~~SAT~~~-~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 149 MIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYSATFPL-SVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHSCT------TCEEEEEESCCCH-HHHHHHHHHCSSCEEE
T ss_pred EEEEEChHHhHhhCcHHHHHHHHHhCCc------cceEEEEEeeCCH-HHHHHHHHHcCCCeEe
Confidence 9999999999999999999999999986 6899999999997 9999999999999765
No 29
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.2e-36 Score=304.30 Aligned_cols=206 Identities=31% Similarity=0.511 Sum_probs=174.4
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+++|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-------------- 94 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-------------- 94 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh--------------
Confidence 367999999999999999999999999999999999999999999999999999999999984421
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 95 -------------------------------------------------------------------------------- 94 (237)
T 3bor_A 95 -------------------------------------------------------------------------------- 94 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 95 -------------------------------------------------------------------------------- 94 (237)
T 3bor_A 95 -------------------------------------------------------------------------------- 94 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
...++++|||+||++|+.|+++.++.+..... +++..
T Consensus 95 ----------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~ 131 (237)
T 3bor_A 95 ----------------------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMG---ATCHA 131 (237)
T ss_dssp ----------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEE
T ss_pred ----------------------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcC---ceEEE
Confidence 01234799999999999999999999987654 88889
Q ss_pred EeCCccHHHHHHHhccC-CcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCce
Q psy8712 321 IIGGVNVKDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~ 399 (651)
+.||.....+...+..+ ++|+|+||+++.+++.++.+.++++++|||||||++++++|...+..+++.++. +.
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------~~ 205 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT------SI 205 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT------TC
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC------CC
Confidence 99998887777777665 999999999999999988888999999999999999999999999999999876 68
Q ss_pred eEEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 400 Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
|++++|||+++ .+.++++.++++|..|.+.
T Consensus 206 ~~i~~SAT~~~-~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 206 QVVLLSATMPT-DVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEEECSSCCH-HHHHHHHHHCSSCEEEC--
T ss_pred eEEEEEEecCH-HHHHHHHHHCCCCEEEEec
Confidence 99999999997 9999999999999988765
No 30
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-35 Score=298.16 Aligned_cols=205 Identities=30% Similarity=0.449 Sum_probs=182.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--------------- 88 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL--------------- 88 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------
Confidence 46999999999999999999999999999999999999999999999999999999999974422
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (230)
T 2oxc_A 89 -------------------------------------------------------------------------------- 88 (230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (230)
T 2oxc_A 89 -------------------------------------------------------------------------------- 88 (230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++|||+||++|+.|+++.++.+..... ++++..+
T Consensus 89 ---------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~ 127 (230)
T 2oxc_A 89 ---------------------------------------ENLSTQILILAPTREIAVQIHSVITAIGIKME--GLECHVF 127 (230)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEE
T ss_pred ---------------------------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccC--CceEEEE
Confidence 01235799999999999999999999986542 4888999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.||.....+...+. +++|+|+||+++.+++..+.+.++++++||+||||++++++ |.+.+..+++.++. +.|
T Consensus 128 ~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~------~~~ 200 (230)
T 2oxc_A 128 IGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA------SKQ 200 (230)
T ss_dssp CTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS------SCE
T ss_pred eCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC------CCe
Confidence 99998877766654 69999999999999999888889999999999999999987 99999999999986 589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++++|||+++ .+.+++..++.+|..|.+.
T Consensus 201 ~l~lSAT~~~-~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 201 MLAVSATYPE-FLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp EEEEESCCCH-HHHHHHTTTCSSCEEECC-
T ss_pred EEEEEeccCH-HHHHHHHHHcCCCeEEEcC
Confidence 9999999997 8999999999999888653
No 31
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=294.01 Aligned_cols=209 Identities=33% Similarity=0.486 Sum_probs=183.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|+++++++.+.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.+..
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~------------- 91 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ------------- 91 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT-------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc-------------
Confidence 5799999999999999999999999999999999999999999999999999999999999876510
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (236)
T 2pl3_A 92 -------------------------------------------------------------------------------- 91 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (236)
T 2pl3_A 92 -------------------------------------------------------------------------------- 91 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.....++++||++||++|+.|+++.++.+....+ +++..+
T Consensus 92 -------------------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~ 131 (236)
T 2pl3_A 92 -------------------------------------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD---FSAGLI 131 (236)
T ss_dssp -------------------------------------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS---CCEEEE
T ss_pred -------------------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC---eeEEEE
Confidence 0001245899999999999999999999987654 888999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.....+...+ .+++|+|+||+++.+++... .+.++++++||+||||++++++|...+..++..++. +.|
T Consensus 132 ~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~------~~~ 204 (236)
T 2pl3_A 132 IGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK------KRQ 204 (236)
T ss_dssp CCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT------TSE
T ss_pred ECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC------CCe
Confidence 9998877766665 47899999999999988764 567889999999999999999999999999999986 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
++++|||+++ .+.++++.++.+|..|.+..
T Consensus 205 ~l~~SAT~~~-~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 205 TLLFSATQTK-SVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEESSCCH-HHHHHHHHSCSSCEEEECCC
T ss_pred EEEEEeeCCH-HHHHHHHHhCCCCEEEEeCC
Confidence 9999999997 89999999999999887753
No 32
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.1e-35 Score=288.70 Aligned_cols=135 Identities=33% Similarity=0.520 Sum_probs=122.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+++.++.+... +++..+.||.....+...+.++++|+|+||+++.+++..+.+.+++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH-----LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT-----SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc-----ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 468999999999999999999988753 678889999988888878888999999999999999998888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
+||+||||++++++|...+..++..++. +.|++++|||+++ .+.++++.++.+|..|.+.
T Consensus 147 ~iViDEah~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 147 VAVLDEADEMLSMGFEEEVEALLSATPP------SRQTLLFSATLPS-WAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHTSCT------TSEEEEECSSCCH-HHHHHHHHHCSSCEEEECC
T ss_pred EEEEEChhHhhccchHHHHHHHHHhCCc------cCeEEEEEEecCH-HHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999999998876 6899999999997 8999999999999888754
No 33
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.3e-35 Score=293.36 Aligned_cols=207 Identities=31% Similarity=0.504 Sum_probs=175.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|++++++.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~--------------- 78 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 78 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc---------------
Confidence 57999999999999999999999999999999999999999999999999999999999984422
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 79 -------------------------------------------------------------------------------- 78 (224)
T 1qde_A 79 -------------------------------------------------------------------------------- 78 (224)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 79 -------------------------------------------------------------------------------- 78 (224)
T 1qde_A 79 -------------------------------------------------------------------------------- 78 (224)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++||++||++|+.|+++.++.+....+ +++..+
T Consensus 79 ---------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~ 116 (224)
T 1qde_A 79 ---------------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHAC 116 (224)
T ss_dssp ---------------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEE
T ss_pred ---------------------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccC---ceEEEE
Confidence 01235799999999999999999999887654 888999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.||.....+...+.+ ++|+|+||+++.+++.++.+.++++++||+||||++++++|...+..++..++. +.|+
T Consensus 117 ~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~------~~~~ 189 (224)
T 1qde_A 117 IGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------TTQV 189 (224)
T ss_dssp CC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------TCEE
T ss_pred eCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc------cCeE
Confidence 999887777666655 999999999999999988888999999999999999999999999999999876 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCC
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~ 433 (651)
+++|||+++ .+.++++.++.+|..|.+...+
T Consensus 190 i~lSAT~~~-~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 190 VLLSATMPN-DVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp EEEESSCCH-HHHHHHHHHCSSCEEEC-----
T ss_pred EEEEeecCH-HHHHHHHHHCCCCEEEEecCCc
Confidence 999999997 9999999999999988876554
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7e-36 Score=341.36 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=75.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Cc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l 357 (651)
++++||+||++||.|+++++..+.++++ +++.+++||.+... +.+..++||+||||++| .|+++.+ .+
T Consensus 116 ~~vlVltPTreLA~Q~~e~~~~l~~~lg---l~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~ 190 (853)
T 2fsf_A 116 KGVHVVTVNDYLAQRDAENNRPLFEFLG---LTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEER 190 (853)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGC
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHHHhcC---CeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHh
Confidence 3689999999999999999999999886 99999999988643 33445799999999999 7888755 36
Q ss_pred ccCCcceEeeccchhhh-hcc---------------chHHHHHHHhcCCC
Q psy8712 358 SLTHCRFFVLDEADGLL-KQG---------------YGNLIDRMHKQIPK 391 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll-~~g---------------f~~~i~~il~~lp~ 391 (651)
.+++++++||||||.|| +.+ |..++..|+..++.
T Consensus 191 ~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 191 VQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred cccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 67999999999999999 543 66788899988874
No 35
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-35 Score=298.45 Aligned_cols=131 Identities=30% Similarity=0.465 Sum_probs=118.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l 362 (651)
++++|||+||++||.|+++.++++..... +++..++||.....+...+..+++|+|+||+++.+++... .+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l 202 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHV---HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNL 202 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCC---SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcC---ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccC
Confidence 45799999999999999999999987654 8889999999998888888889999999999999988764 4778999
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCC
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFP 424 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p 424 (651)
++|||||||++++++|.+.+..+++.++. ++|+++||||+++ .+.++++.+++++
T Consensus 203 ~~lViDEah~l~~~~~~~~l~~i~~~~~~------~~q~l~~SAT~~~-~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 203 QCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSATQTR-KVEDLARISLKKE 257 (262)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHHSCS------SSEEEEECSSCCH-HHHHHHHHHCSSC
T ss_pred CEEEEcChHHHhhhhHHHHHHHHHHhCCC------CCeEEEEEecCCH-HHHHHHHHHcCCC
Confidence 99999999999999999999999999987 6899999999997 9999999888754
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.6e-35 Score=338.39 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=93.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHCR 363 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l~ 363 (651)
+++|||+||++|+.|+.+.++++....+ +++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+++++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~ 138 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHG---YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 138 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCC---ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCccccccccc
Confidence 3799999999999999999999986543 899999999887777777777899999999999999998877 789999
Q ss_pred eEeeccchhhhhccchH-HHHHHHhc-CCCccCCCCceeEEEEeeccC
Q psy8712 364 FFVLDEADGLLKQGYGN-LIDRMHKQ-IPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~-~i~~il~~-lp~~~~~~~~~Q~l~~SATl~ 409 (651)
+|||||||++.+..... .+...+.. +... .....|++++|||+.
T Consensus 139 ~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~--~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 139 LMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--SGPLPQVIGLTASVG 184 (696)
T ss_dssp EEEEETGGGCSTTCHHHHHHHHHHHHHHTTC--CSCCCEEEEEESCCC
T ss_pred EEEEeCCCcccCcccHHHHHHHHHHHhhccc--CCCCCeEEEEeCccc
Confidence 99999999988654222 22222221 1110 012589999999986
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.2e-35 Score=340.12 Aligned_cols=220 Identities=19% Similarity=0.264 Sum_probs=164.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|+++||.|+++.++++... ++++..++|+....... ...++|+|+||+++..++.+....++++++|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~~----g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 142 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEKI----GLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKIL 142 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGGG----TCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHhc----CCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEE
Confidence 7999999999999999999766543 38889999977654331 2368999999999999888876668899999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-------CeEEE----------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-------PTWVD---------- 428 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-------p~~i~---------- 428 (651)
||||||++.++++...+..++.+++. +.|++++|||+++ ..++.+++... |..+.
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~------~~~ii~lSATl~n--~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~ 214 (720)
T 2zj8_A 143 VADEIHLIGSRDRGATLEVILAHMLG------KAQIIGLSATIGN--PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVT 214 (720)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHHBT------TBEEEEEECCCSC--HHHHHHHTTEEEEECCCCSSEEEEEEEETTEEE
T ss_pred EEECCcccCCCcccHHHHHHHHHhhc------CCeEEEEcCCcCC--HHHHHHHhCCcccCCCCCCCcceEEEEeCCeee
Confidence 99999999988899999999988874 5899999999973 56666655321 21111
Q ss_pred ccC-----CCCcc-------CceEEEEEEeCcchHHHH--HH--------------------------------------
Q psy8712 429 LKG-----EDAVP-------ETVHHVVVKIDPQQDETW--GR-------------------------------------- 456 (651)
Q Consensus 429 ~~~-----~~~~~-------~~i~~~~~~~~~~~~~~~--~~-------------------------------------- 456 (651)
... ..... ..-.+.+++|++++.... ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 215 WEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp ETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 000 00000 011456777776542110 00
Q ss_pred --------------------HhhccccceeeccccccCCCCCCCCCEEEE----eC----CCCChhhhhhhcCccccCC-
Q psy8712 457 --------------------LRSHIQTDGVHARDNARPGIDISGLPFIIN----MT----LPDDKANYVHRIGRVGRAE- 507 (651)
Q Consensus 457 --------------------l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d----lP~s~~~YihRiGR~GR~g- 507 (651)
.+......++++|+.+++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 012234566778999999999999999999 87 6899999999999999998
Q ss_pred -CceEEEEeeeCCc
Q psy8712 508 -RMGLAISLVSTVP 520 (651)
Q Consensus 508 -~~G~ai~lv~~~d 520 (651)
..|.|+.++++.+
T Consensus 375 ~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD 388 (720)
T ss_dssp CSEEEEEEECSSSC
T ss_pred CCCceEEEEecCcc
Confidence 5899999998765
No 38
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-34 Score=287.79 Aligned_cols=137 Identities=28% Similarity=0.492 Sum_probs=120.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
.+++||++||++|+.|+++.++++....+ ++++..+.||.+...+...+.+ .++|+|+||+++.+++..+.+.++++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTST--TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCC--CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 35799999999999999999999987653 4888999999988777776665 57999999999999999888889999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
+++|+||||++++ .+|...+..+++.++. +.|++++|||+++ .+.++++.++.+|..|.+
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPH------EKQVMMFSATLSK-EIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCS------SSEEEEEESCCCT-TTHHHHHTTCSSCEEEEC
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCC------cCeEEEEEeecCH-HHHHHHHHHcCCCeEEeC
Confidence 9999999999997 5888899999988876 6899999999997 899999999999987753
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.8e-35 Score=328.21 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=97.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+++.++++....+ +++..+.|+.....+...+..+++|+|+||++|.+++..+.+ .+.++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 128 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG---YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVF 128 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT---CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC---cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccC
Confidence 34799999999999999999999987664 899999999988777777777899999999999999998877 78999
Q ss_pred ceEeeccchhhhhccchHH-HHHHHhc-CCCccCCCCceeEEEEeeccCh
Q psy8712 363 RFFVLDEADGLLKQGYGNL-IDRMHKQ-IPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~-i~~il~~-lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
++|||||||++.+.+.... +...+.. +.. ......|++++|||++.
T Consensus 129 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 129 TLMIFDECHNTSKNHPYNQIMFRYLDHKLGE--SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SEEEETTGGGCSTTCHHHHHHHHHHHHHTSS--CCSCCCEEEEEESCCCC
T ss_pred CEEEEECccccCCcchHHHHHHHHHHhhhcc--ccCCCCeEEEEecCccc
Confidence 9999999999988653332 3233332 211 11225899999999953
No 40
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=352.81 Aligned_cols=217 Identities=15% Similarity=0.238 Sum_probs=160.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++||++||++||.|+++.+..+.. .+.++.|+... ..+++|+|+||++|.+++.++...++++++
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~-------~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG-------DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS-------SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC-------CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 3799999999999999999998764 45678888763 346899999999999999988888899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh-HHHHHHHHHhccCCeEEEccCCCCcc-------
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD-FDVKKMAERLMYFPTWVDLKGEDAVP------- 436 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~-~~v~~l~~~~l~~p~~i~~~~~~~~~------- 436 (651)
|||||||++.+++|...+..++..++. ++|++++|||+++ .++..+...+...|..+........+
T Consensus 294 VVIDEaH~l~d~~rg~~~e~ii~~l~~------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~ 367 (1108)
T 3l9o_A 294 VIFDEVHYMRDKERGVVWEETIILLPD------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFP 367 (1108)
T ss_dssp EEEETGGGTTSHHHHHHHHHHHHHSCT------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEE
T ss_pred EEEhhhhhccccchHHHHHHHHHhcCC------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEee
Confidence 999999999999999999999999987 6999999999975 12344555555454433221111000
Q ss_pred -----------------------------------------------------------------------CceEEEEEE
Q psy8712 437 -----------------------------------------------------------------------ETVHHVVVK 445 (651)
Q Consensus 437 -----------------------------------------------------------------------~~i~~~~~~ 445 (651)
......+++
T Consensus 368 ~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF 447 (1108)
T 3l9o_A 368 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 447 (1108)
T ss_dssp TTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEE
Confidence 001135566
Q ss_pred eCcchHHHH------------------------------------------------------------------HHHhh
Q psy8712 446 IDPQQDETW------------------------------------------------------------------GRLRS 459 (651)
Q Consensus 446 ~~~~~~~~~------------------------------------------------------------------~~l~~ 459 (651)
|.+...... ...+.
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~ 527 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 527 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHh
Confidence 655431110 00122
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeCCC--------CChhhhhhhcCccccCC--CceEEEEeeeCCcc
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMTLP--------DDKANYVHRIGRVGRAE--RMGLAISLVSTVPE 521 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~dlP--------~s~~~YihRiGR~GR~g--~~G~ai~lv~~~de 521 (651)
.....++++|+.+++|||+|++++||+++.| .++.+|+||+|||||.| ..|.|++++.+..+
T Consensus 528 ~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 528 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 2345678899999999999999999987764 36677999999999999 78999999987643
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3e-34 Score=323.51 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+.+.++.+....+ +++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 131 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 131 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccC
Confidence 45799999999999999999999987664 899999999988777777777899999999999999998888 79999
Q ss_pred ceEeeccchhhhhccchHHHH-HHHhc-CCCccCCCCceeEEEEeeccC
Q psy8712 363 RFFVLDEADGLLKQGYGNLID-RMHKQ-IPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~-~il~~-lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++|||||||++.++++...+. ..+.. +.. .....|++++|||++
T Consensus 132 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 132 TLMIFDECHNTTGNHPYNVLMTRYLEQKFNS---ASQLPQILGLTASVG 177 (556)
T ss_dssp SEEEEETGGGCSTTSHHHHHHHHHHHHHHCC------CCEEEEEESCCC
T ss_pred CEEEEECCcccCCcchHHHHHHHHHHhhhcc---cCCCCeEEEEeCCcc
Confidence 999999999999876544432 22222 111 112589999999984
No 42
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-34 Score=335.55 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=157.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
+++|++|+++||.|+++.++.+... ++++..++|+...... .+ ..++|+|+||+++..++.+....++++++|
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~~----g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 149 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWELI----GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYF 149 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGGG----TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhcC----CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEE
Confidence 7999999999999999999655542 3788888888665433 12 368999999999999988877678999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC---------CeEEEc--cC---
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF---------PTWVDL--KG--- 431 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~---------p~~i~~--~~--- 431 (651)
||||||.+.+..+...++.++.+++. .|++++|||+++ ..++++++... |....+ ..
T Consensus 150 IiDE~H~l~~~~~~~~l~~i~~~~~~-------~~ii~lSATl~n--~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~ 220 (715)
T 2va8_A 150 VLDELHYLNDPERGPVVESVTIRAKR-------RNLLALSATISN--YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKK 220 (715)
T ss_dssp EECSGGGGGCTTTHHHHHHHHHHHHT-------SEEEEEESCCTT--HHHHHHHHTCEEEECCCCSSCEEEEEEEECSST
T ss_pred EEechhhcCCcccchHHHHHHHhccc-------CcEEEEcCCCCC--HHHHHHHhCCCccCCCCCCCCceEEEEecCCcc
Confidence 99999999887888889988888763 799999999973 46666655321 111110 00
Q ss_pred -------C----------CCc-------cCceEEEEEEeCcchHHH--HHHH----------------------------
Q psy8712 432 -------E----------DAV-------PETVHHVVVKIDPQQDET--WGRL---------------------------- 457 (651)
Q Consensus 432 -------~----------~~~-------~~~i~~~~~~~~~~~~~~--~~~l---------------------------- 457 (651)
. ... ...-.+.+++++..+... ...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGG 300 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSC
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcc
Confidence 0 000 001134667776543211 0111
Q ss_pred ---------------------------------hhccccceeeccccccCCCCCCCCCEEEE----eC-------CCCCh
Q psy8712 458 ---------------------------------RSHIQTDGVHARDNARPGIDISGLPFIIN----MT-------LPDDK 493 (651)
Q Consensus 458 ---------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d-------lP~s~ 493 (651)
+......++.+|+.+++|||+|++++||+ || .|.+.
T Consensus 301 ~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~ 380 (715)
T 2va8_A 301 SDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPI 380 (715)
T ss_dssp HHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CH
T ss_pred ccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCH
Confidence 12234556778999999999999999999 99 89999
Q ss_pred hhhhhhcCccccCC--CceEEEEeeeCCcc
Q psy8712 494 ANYVHRIGRVGRAE--RMGLAISLVSTVPE 521 (651)
Q Consensus 494 ~~YihRiGR~GR~g--~~G~ai~lv~~~de 521 (651)
.+|+||+|||||.| ..|.|+.++++.++
T Consensus 381 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 381 MEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999988 48999999987653
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.6e-34 Score=330.55 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=98.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Ccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HLS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l~ 358 (651)
+++||+||++||.|+++++..+.++++ +++.+++||.+...+. +..++||+||||++| .|+++.+ .+.
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~lG---Lsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~ 228 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFLG---LQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLV 228 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhc
Confidence 689999999999999999999999986 9999999998865443 334699999999999 7877654 466
Q ss_pred cCCcceEeeccchhhh-h---------------ccchHHHHHHHhcCCCc---cCCCCceeEE-----------------
Q psy8712 359 LTHCRFFVLDEADGLL-K---------------QGYGNLIDRMHKQIPKI---TSDGKRLQMI----------------- 402 (651)
Q Consensus 359 l~~l~~lViDEaD~ll-~---------------~gf~~~i~~il~~lp~~---~~~~~~~Q~l----------------- 402 (651)
++.+.++||||||.|| + ++|..++..|+..++.. .-+..+.|++
T Consensus 229 lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~ 308 (922)
T 1nkt_A 229 QRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDN 308 (922)
T ss_dssp CCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSS
T ss_pred cCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCcc
Confidence 8899999999999999 4 35888999999999720 0011267998
Q ss_pred EEeeccCh
Q psy8712 403 VCSATLHD 410 (651)
Q Consensus 403 ~~SATl~~ 410 (651)
+||||++.
T Consensus 309 Lfsat~~~ 316 (922)
T 1nkt_A 309 LYEAANSP 316 (922)
T ss_dssp TTCSTTCC
T ss_pred ccCCcchh
Confidence 99999864
No 44
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=290.79 Aligned_cols=140 Identities=24% Similarity=0.341 Sum_probs=115.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH-HHhccCCcEEEECchhhHHHHhCC--CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM-SVLSSGVDIVVGTPGRMEDLISGG--HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~-~~L~~~~dIlV~TP~rL~~ll~~~--~l~l~ 360 (651)
++++|||+||++|+.|+++.++++....+ +++..+.|+....... .....+++|+|+||+++.+++... .+.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTG---FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45899999999999999999999987654 7777777765543332 233457899999999999999876 57789
Q ss_pred CcceEeeccchhhhh---ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC
Q psy8712 361 HCRFFVLDEADGLLK---QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432 (651)
Q Consensus 361 ~l~~lViDEaD~ll~---~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~ 432 (651)
++++|||||||++++ .+|...+..++..+... +.|+++||||+++ ++.++++.++++|..+.+...
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~SAT~~~-~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH-----KVRRAMFSATFAY-DVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT-----TCEEEEEESSCCH-HHHHHHHHHSSSCEEEEECC-
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCC-----CcEEEEEeccCCH-HHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999998 47888899888776542 5899999999997 999999999999999988764
No 45
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.3e-34 Score=337.09 Aligned_cols=223 Identities=21% Similarity=0.252 Sum_probs=162.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|+++||.|+++.++.+... ++++..++|+...... . ...++|+|+||+++..++.+....++++++|
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~~----g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEKI----GLRIGISTGDYESRDE--H-LGDCDIIVTTSEKADSLIRNRASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTTT----TCCEEEECSSCBCCSS--C-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHhc----CCEEEEEeCCCCcchh--h-ccCCCEEEECHHHHHHHHHcChhHHhhcCEE
Confidence 6899999999999999999655432 4888899998765432 1 2368999999999999998877668999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC---------CeEEEccCCCC--
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF---------PTWVDLKGEDA-- 434 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~---------p~~i~~~~~~~-- 434 (651)
||||||++.++++...+..++..+... ..+.|++++|||++ +..++++++... |....+.....
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~---~~~~~ii~lSATl~--n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRM---NKALRVIGLSATAP--NVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLE 217 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHH---CTTCEEEEEECCCT--THHHHHHHTTCEEEECCCCSSCEEEEEECSSEEE
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhc---CcCceEEEECCCcC--CHHHHHHHhCCCcccCCCCCccceEEEeeCCeee
Confidence 999999999888888888877766321 11589999999998 456777655321 11111100000
Q ss_pred cc--------------------CceEEEEEEeCcchHHH--HHH------------------------------------
Q psy8712 435 VP--------------------ETVHHVVVKIDPQQDET--WGR------------------------------------ 456 (651)
Q Consensus 435 ~~--------------------~~i~~~~~~~~~~~~~~--~~~------------------------------------ 456 (651)
.. ..-.+.+++|+..+... ...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred ccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00 00134667776654211 000
Q ss_pred -------------------HhhccccceeeccccccCCCCCCCCCEEEE----eC---CCCChhhhhhhcCccccCC--C
Q psy8712 457 -------------------LRSHIQTDGVHARDNARPGIDISGLPFIIN----MT---LPDDKANYVHRIGRVGRAE--R 508 (651)
Q Consensus 457 -------------------l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d---lP~s~~~YihRiGR~GR~g--~ 508 (651)
.+......++.+|+.+++|||+|++++||+ || .|.+..+|+||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 022234567788999999999999999999 77 7899999999999999998 5
Q ss_pred ceEEEEeeeCCc
Q psy8712 509 MGLAISLVSTVP 520 (651)
Q Consensus 509 ~G~ai~lv~~~d 520 (651)
.|.|+.++++.+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 899999998754
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-32 Score=321.88 Aligned_cols=121 Identities=18% Similarity=0.148 Sum_probs=92.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+.+.++++....+ +++..++|+.....+...+..+++|+|+||++|.+++..+.+ .++++
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 372 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 372 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCC---ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccC
Confidence 34799999999999999999999987654 899999999988877777778899999999999999998877 78999
Q ss_pred ceEeeccchhhhhccchHHH-HHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 363 RFFVLDEADGLLKQGYGNLI-DRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i-~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++|||||||++.+.+....+ ..++..... ......|++++|||++
T Consensus 373 ~~iViDEaH~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 373 TLMIFDECHNTTGNHPYNVLMTRYLEQKFN--SASQLPQILGLTASVG 418 (797)
T ss_dssp SEEEETTGGGCSTTSHHHHHHHHHHHHHHT--TCCCCCEEEEEESCCC
T ss_pred CEEEEECccccCCCccHHHHHHHHHHHhhc--cCCCCCeEEEEcCCcc
Confidence 99999999999876543332 233222100 0112589999999984
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.5e-35 Score=333.07 Aligned_cols=208 Identities=14% Similarity=0.073 Sum_probs=139.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|||+|||+||.|+++.++.+ .+. ..+.. .. ..-..+..+.+.|.+.+...+... ..++++++
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~~~---------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~ 280 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALRGL---------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNL 280 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS---------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSE
T ss_pred CeEEEEcChHHHHHHHHHHhcCC---------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeE
Confidence 47999999999999999887622 222 11111 00 000112345556666665444332 34789999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC---C---cc--
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED---A---VP-- 436 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~---~---~~-- 436 (651)
|||||||++ +.+|...+..++..++.. ++|+++||||++. .+..+.. .++..+.+.... . ..
T Consensus 281 iViDEah~~-~~~~~~~~~~i~~~l~~~-----~~q~il~SAT~~~-~~~~~~~---~~~~~~~v~~~~~~~~~~~ll~~ 350 (618)
T 2whx_A 281 IVMDEAHFT-DPCSVAARGYISTRVEMG-----EAAAIFMTATPPG-STDPFPQ---SNSPIEDIEREIPERSWNTGFDW 350 (618)
T ss_dssp EEEESTTCC-SHHHHHHHHHHHHHHHHT-----SCEEEEECSSCTT-CCCSSCC---CSSCEEEEECCCCSSCCSSSCHH
T ss_pred EEEECCCCC-CccHHHHHHHHHHHhccc-----CccEEEEECCCch-hhhhhhc---cCCceeeecccCCHHHHHHHHHH
Confidence 999999998 667888888888776421 5899999999986 4443322 244444443211 0 00
Q ss_pred --CceEEEEEEeCcchHHH--HHHH---------------------hhccccceeeccccccCCCCCCCCCEE-------
Q psy8712 437 --ETVHHVVVKIDPQQDET--WGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFI------- 484 (651)
Q Consensus 437 --~~i~~~~~~~~~~~~~~--~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~V------- 484 (651)
+.-.+.+++|++.+... ...+ ++..+..++++||.+++|||+| +++|
T Consensus 351 l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 351 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred HHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 01135778888765322 1112 2233567888999999999997 9988
Q ss_pred -------------EEeCCCCChhhhhhhcCccccCCC-ceEEEEeeeC
Q psy8712 485 -------------INMTLPDDKANYVHRIGRVGRAER-MGLAISLVST 518 (651)
Q Consensus 485 -------------In~dlP~s~~~YihRiGR~GR~g~-~G~ai~lv~~ 518 (651)
||||+|.+.++|+||+|||||+|. .|.|++|++.
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 888889999999999999999964 9999999973
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.98 E-value=4.8e-32 Score=315.37 Aligned_cols=214 Identities=19% Similarity=0.162 Sum_probs=142.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.+++||+||++||.|+++.++++...++ +++..++|+.....+. ..+.+ .++|+|+||+.+.+ .+.++
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~g---i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~ 489 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFN---IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFK 489 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSS---CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCS
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhcc
Confidence 3799999999999999999999886654 8999999998876543 34444 49999999988754 45688
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC------------CeEEE
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF------------PTWVD 428 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~------------p~~i~ 428 (651)
+++++||||+|++.. . ....+... +.++|++++|||+.+ ....+......+ |....
T Consensus 490 ~l~lVVIDEaHr~g~---~--qr~~l~~~------~~~~~vL~mSATp~p-~tl~~~~~g~~~~s~i~~~p~~r~~i~~~ 557 (780)
T 1gm5_A 490 NLGLVIIDEQHRFGV---K--QREALMNK------GKMVDTLVMSATPIP-RSMALAFYGDLDVTVIDEMPPGRKEVQTM 557 (780)
T ss_dssp CCCEEEEESCCCC----------CCCCSS------SSCCCEEEEESSCCC-HHHHHHHTCCSSCEEECCCCSSCCCCEEC
T ss_pred CCceEEecccchhhH---H--HHHHHHHh------CCCCCEEEEeCCCCH-HHHHHHHhCCcceeeeeccCCCCcceEEE
Confidence 999999999998632 1 11111111 225899999999876 443333211111 11111
Q ss_pred ccCCCCc----------cCceEEEEEEeCcch----------HHHHHHH----------------------------hhc
Q psy8712 429 LKGEDAV----------PETVHHVVVKIDPQQ----------DETWGRL----------------------------RSH 460 (651)
Q Consensus 429 ~~~~~~~----------~~~i~~~~~~~~~~~----------~~~~~~l----------------------------~~~ 460 (651)
+...... ...-.+.+++|+..+ ......+ +..
T Consensus 558 ~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 558 LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 1111000 001123344443211 1111111 223
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
.+.+++++|+.+.+|||+|++++||++|.|. +...|.||+||+||.|+.|.|++++.+
T Consensus 638 G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 638 GRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp TSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 3456777899999999999999999999997 678888999999999999999999874
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-31 Score=320.89 Aligned_cols=213 Identities=15% Similarity=0.229 Sum_probs=161.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++||++||++|+.|+++.++.+.. ++..++|+.... ..++|+|+||++|.+++.++...++++++
T Consensus 130 ~rvL~l~PtkaLa~Q~~~~l~~~~~-------~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~l 195 (1010)
T 2xgj_A 130 QRVIYTSPIKALSNQKYRELLAEFG-------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAW 195 (1010)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHS-------CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEE
T ss_pred CeEEEECChHHHHHHHHHHHHHHhC-------CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCE
Confidence 3799999999999999999998763 466788887643 35899999999999998888788899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh---ccCCeEEEccCCCCcc-----
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL---MYFPTWVDLKGEDAVP----- 436 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~---l~~p~~i~~~~~~~~~----- 436 (651)
|||||||++.+++++..+..++..++. +.|++++|||+++ ..+++.++ ...+..+........+
T Consensus 196 VViDEaH~l~d~~rg~~~e~il~~l~~------~~~il~LSATi~n--~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~ 267 (1010)
T 2xgj_A 196 VIFDEVHYMRDKERGVVWEETIILLPD------KVRYVFLSATIPN--AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYL 267 (1010)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHSCT------TCEEEEEECCCTT--HHHHHHHHHHHHTSCEEEEEECCCSSCEEEEE
T ss_pred EEEechhhhcccchhHHHHHHHHhcCC------CCeEEEEcCCCCC--HHHHHHHHHhhcCCCeEEEecCCCcccceEEE
Confidence 999999999999888889999999886 6899999999974 34444443 2333322211100000
Q ss_pred -------------------------------------------------------------C------------ceEEEE
Q psy8712 437 -------------------------------------------------------------E------------TVHHVV 443 (651)
Q Consensus 437 -------------------------------------------------------------~------------~i~~~~ 443 (651)
. .....+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~I 347 (1010)
T 2xgj_A 268 FPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVI 347 (1010)
T ss_dssp EETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEE
T ss_pred EecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEE
Confidence 0 011355
Q ss_pred EEeCcchHHHH------------------------------------------------------------------HHH
Q psy8712 444 VKIDPQQDETW------------------------------------------------------------------GRL 457 (651)
Q Consensus 444 ~~~~~~~~~~~------------------------------------------------------------------~~l 457 (651)
+++.+...... ...
T Consensus 348 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~ 427 (1010)
T 2xgj_A 348 VFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEIL 427 (1010)
T ss_dssp EEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHH
Confidence 66655431110 011
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEE----eCC----CCChhhhhhhcCccccCCC--ceEEEEeeeCC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIIN----MTL----PDDKANYVHRIGRVGRAER--MGLAISLVSTV 519 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn----~dl----P~s~~~YihRiGR~GR~g~--~G~ai~lv~~~ 519 (651)
+......++++|+.+++|||+|++++||+ ||. |.++.+|+||+|||||.|. .|.||+|+++.
T Consensus 428 F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 428 FQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 22334567889999999999999999999 999 8999999999999999996 59999999875
No 50
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=4e-32 Score=300.08 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++||++|||+||.|+++.+..+ .+....+.... ....+..|.++||+.+.+.+.+. ..++++++
T Consensus 49 ~~~lvl~Ptr~La~Q~~~~l~g~---------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~ 113 (451)
T 2jlq_A 49 LRTLILAPTRVVAAEMEEALRGL---------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNL 113 (451)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS---------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSE
T ss_pred CcEEEECCCHHHHHHHHHHhcCc---------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCE
Confidence 47999999999999999987522 22211111110 11235679999999998776544 45789999
Q ss_pred EeeccchhhhhccchHHHHHHHhcC-CCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCC---c-----
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQI-PKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA---V----- 435 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~l-p~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~---~----- 435 (651)
|||||||++ +..+...+..+.... +. +.|++++|||+++ .+.. .+..++..+.+..... .
T Consensus 114 iViDEah~~-~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~ 182 (451)
T 2jlq_A 114 IVMDEAHFT-DPCSVAARGYISTRVEMG------EAAAIFMTATPPG-STDP---FPQSNSPIEDIEREIPERSWNTGFD 182 (451)
T ss_dssp EEEETTTCC-SHHHHHHHHHHHHHHHTT------SCEEEEECSSCTT-CCCS---SCCCSSCEEEEECCCCSSCCSSSCH
T ss_pred EEEeCCccC-CcchHHHHHHHHHhhcCC------CceEEEEccCCCc-cchh---hhcCCCceEecCccCCchhhHHHHH
Confidence 999999987 433333333332221 22 5899999999986 3332 2334444443321100 0
Q ss_pred --cCceEEEEEEeCcchHHH--HHHH---------------------hhccccceeeccccccCCCCCCCCCEEEEeC--
Q psy8712 436 --PETVHHVVVKIDPQQDET--WGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFIINMT-- 488 (651)
Q Consensus 436 --~~~i~~~~~~~~~~~~~~--~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~d-- 488 (651)
.+.-.+.+++|++.+... ...+ +...+..++++|+.+++|||+|+ ++|||||
T Consensus 183 ~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 183 WITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp HHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred HHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 001135788888765322 2222 23345677889999999999999 9999999
Q ss_pred ------------------CCCChhhhhhhcCccccCCC-ceEEEEeeeC
Q psy8712 489 ------------------LPDDKANYVHRIGRVGRAER-MGLAISLVST 518 (651)
Q Consensus 489 ------------------lP~s~~~YihRiGR~GR~g~-~G~ai~lv~~ 518 (651)
.|.+.++|+||+|||||.|+ .|.+++|...
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=2.9e-31 Score=317.08 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=91.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+++.++++....+ +++..++|+.....+...+..+++|+|+||++|.+++..+.+ .++++
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~---~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~ 372 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 372 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT---CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCC
Confidence 34799999999999999999999987654 899999999987776666767899999999999999998877 78999
Q ss_pred ceEeeccchhhhhccchHH-HHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 363 RFFVLDEADGLLKQGYGNL-IDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~-i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++|||||||++...+.... +..++..... ......|++++|||+.
T Consensus 373 ~liViDEaH~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 373 TLMIFDECHNTTGNHPYNVLMTRYLEQKFN--SASQLPQILGLTASVG 418 (936)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHHT--TCSCCCEEEEEESCCC
T ss_pred CEEEEECccccCCCccHHHHHHHHHHHhhc--cCCCcCeEEEecCCcc
Confidence 9999999999987643322 2233322100 0112589999999984
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=9.4e-31 Score=326.20 Aligned_cols=227 Identities=17% Similarity=0.222 Sum_probs=156.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC--cccCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH--LSLTHC 362 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~--l~l~~l 362 (651)
++|+|+|||+||.|+++.++. |+..++ +++..++|+...+... ..+++|+|+|||++..++++.. -.++++
T Consensus 974 kavyi~P~raLa~q~~~~~~~~f~~~~g---~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v 1047 (1724)
T 4f92_B 974 RCVYITPMEALAEQVYMDWYEKFQDRLN---KKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNI 1047 (1724)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTTTSC---CCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSC
T ss_pred EEEEEcChHHHHHHHHHHHHHHhchhcC---CEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCccccccccee
Confidence 699999999999999998865 555454 8999999987654332 2358999999999988887533 347899
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCcc-CCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce--
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKIT-SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV-- 439 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~-~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i-- 439 (651)
++||+||+|.|.+. .++.+..++.++.... ....++|+|++|||++ +..++++++-.++..+.....+..+-.+
T Consensus 1048 ~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~--N~~dla~WL~~~~~~~~~~~~~~RPvpL~~ 1124 (1724)
T 4f92_B 1048 NLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS--NAKDVAHWLGCSATSTFNFHPNVRPVPLEL 1124 (1724)
T ss_dssp SEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT--THHHHHHHHTCCSTTEEECCGGGCSSCEEE
T ss_pred eEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC--CHHHHHHHhCCCCCCeEEeCCCCCCCCeEE
Confidence 99999999988764 5665555554331100 0012689999999997 6788888774332111111111111111
Q ss_pred -------------------------------EEEEEEeCcchHH------------------------------------
Q psy8712 440 -------------------------------HHVVVKIDPQQDE------------------------------------ 452 (651)
Q Consensus 440 -------------------------------~~~~~~~~~~~~~------------------------------------ 452 (651)
...+++|.+++..
T Consensus 1125 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 1204 (1724)
T 4f92_B 1125 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS 1204 (1724)
T ss_dssp EEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC
T ss_pred EEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc
Confidence 2355666654311
Q ss_pred -------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEE----------eCCCCChhhhh
Q psy8712 453 -------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----------MTLPDDKANYV 497 (651)
Q Consensus 453 -------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----------~dlP~s~~~Yi 497 (651)
..+.++......++.||+.+++|||+|.+.+||. ...|.+..+|+
T Consensus 1205 d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1205 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 1111233445667889999999999999999993 33467899999
Q ss_pred hhcCccccCCC--ceEEEEeeeCCcc
Q psy8712 498 HRIGRVGRAER--MGLAISLVSTVPE 521 (651)
Q Consensus 498 hRiGR~GR~g~--~G~ai~lv~~~de 521 (651)
||+|||||+|. .|.|++++.+.+.
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~~~~ 1310 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQGSKK 1310 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEGGGH
T ss_pred HhhccccCCCCCCceEEEEEecchHH
Confidence 99999999987 7999999887543
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.3e-30 Score=316.20 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=154.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++..+.+..+...+. ..+.. .++|+|+||+.+. +.+.++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~---i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~ 724 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFK 724 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTT---CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCS
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCC---CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCcccc
Confidence 4899999999999999999987765444 8888888876654443 34444 4999999997553 346689
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc----
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP---- 436 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~---- 436 (651)
++++|||||||++ ......+++.++. +.+++++|||+.+ ....+....+.++..+.........
T Consensus 725 ~l~lvIiDEaH~~-----g~~~~~~l~~l~~------~~~vl~lSATp~p-~~l~~~~~~~~~~~~i~~~~~~r~~i~~~ 792 (1151)
T 2eyq_A 725 DLGLLIVDEEHRF-----GVRHKERIKAMRA------NVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARRLAVKTF 792 (1151)
T ss_dssp SEEEEEEESGGGS-----CHHHHHHHHHHHT------TSEEEEEESSCCC-HHHHHHHTTTSEEEECCCCCCBCBCEEEE
T ss_pred ccceEEEechHhc-----ChHHHHHHHHhcC------CCCEEEEcCCCCh-hhHHHHHhcCCCceEEecCCCCccccEEE
Confidence 9999999999984 3344555555554 5899999999887 6666666555554433322211110
Q ss_pred -----------------CceEEEEEEeCcch--HHHHHHH---------------------------hhccccceeeccc
Q psy8712 437 -----------------ETVHHVVVKIDPQQ--DETWGRL---------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 437 -----------------~~i~~~~~~~~~~~--~~~~~~l---------------------------~~~~~~~~l~~td 470 (651)
..-.+.+++|+..+ +.....+ +...+.+++++|+
T Consensus 793 ~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~ 872 (1151)
T 2eyq_A 793 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872 (1151)
T ss_dssp EEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS
T ss_pred EecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 00134566666543 1111111 2334567888999
Q ss_pred cccCCCCCCCCCEEEEeCCC-CChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 471 NARPGIDISGLPFIINMTLP-DDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 471 ~~~rGIDip~v~~VIn~dlP-~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
.+.+|||+|++++||+++.+ .+...|+||+||+||.|+.|.|++++.+
T Consensus 873 v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~ 921 (1151)
T 2eyq_A 873 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 921 (1151)
T ss_dssp TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred cceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECC
Confidence 99999999999999999984 5889999999999999999999999875
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=4.2e-31 Score=307.03 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=86.2
Q ss_pred CeEEEEeCCHHHHHHH-HHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHH------hCCCc
Q psy8712 285 PQAIIIEPSRELAEQT-FNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLI------SGGHL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi-~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll------~~~~l 357 (651)
.++|||+||++|+.|+ .+.++.+... .+++..+.|+.....+...+...++|+|+||++|.+.+ ....+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK----WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT----TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc----CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccce
Confidence 3689999999999999 9999998864 27889999998877766667778999999999999988 44557
Q ss_pred ccCCcceEeeccchhhhhccchHH-HHHHHhcC-CCc------cCCCCceeEEEEeeccCh
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNL-IDRMHKQI-PKI------TSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~-i~~il~~l-p~~------~~~~~~~Q~l~~SATl~~ 410 (651)
.+.++++|||||||++...++... +..++... ... ......+|++++|||++.
T Consensus 133 ~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 133 QLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp CGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred ecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 789999999999999876443333 33222221 000 000014799999999974
No 55
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=9e-33 Score=317.58 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=129.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC--------
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH-------- 356 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~-------- 356 (651)
+++|||+||++||.|+++.++.+. +. ...+ . +. .++||+++++++..+.
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~~-------i~--~~~~--~-------l~-----~v~tp~~ll~~l~~~~l~~~l~~~ 327 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGLP-------VR--YLTP--A-------VQ-----REHSGNEIVDVMCHATLTHRLMSP 327 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSC-------CE--ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSS
T ss_pred CcEEEEccHHHHHHHHHHHHhcCC-------ee--eecc--c-------cc-----ccCCHHHHHHHHHhhhhHHHHhcc
Confidence 479999999999999999887542 22 1000 0 00 1667776655444332
Q ss_pred cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC---C
Q psy8712 357 LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE---D 433 (651)
Q Consensus 357 l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~---~ 433 (651)
..++++++|||||||++ +..+...+..+...++. .++|+++||||+++ .+..+... ..|. ..+... .
T Consensus 328 ~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-----~~~~vl~~SAT~~~-~i~~~~~~--~~~i-~~v~~~~~~~ 397 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-----GEAAAIFMTATPPG-TSDPFPDT--NSPV-HDVSSEIPDR 397 (673)
T ss_dssp SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-----TSCEEEEECSSCTT-CCCSSCCC--SSCE-EEEECCCCSS
T ss_pred cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-----cCCcEEEEcCCCCh-hhhhhccc--CCce-EEEeeecCHH
Confidence 35899999999999998 22222223333333221 15899999999986 54333221 1222 222110 1
Q ss_pred Cc-------cCceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCE
Q psy8712 434 AV-------PETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPF 483 (651)
Q Consensus 434 ~~-------~~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~ 483 (651)
.. .+.-.+.+++|+..+.. ....| +...+..++++|+.+.+|||+| +++
T Consensus 398 ~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 398 AWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp CCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 00 01124578888876532 22222 2334567888999999999999 999
Q ss_pred EEE--------------------eCCCCChhhhhhhcCccccC-CCceEEEEeee
Q psy8712 484 IIN--------------------MTLPDDKANYVHRIGRVGRA-ERMGLAISLVS 517 (651)
Q Consensus 484 VIn--------------------~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~ 517 (651)
||| ||+|.+.++|+||+||+||. |+.|.|++|+.
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 998 67999999999999999999 89999999975
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=8.6e-31 Score=313.47 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=98.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++||++||++|+.|+++.++.+.. ++++..++|+.... ..++|+|+||++|.+++......++++++
T Consensus 83 ~~vlvl~PtraLa~Q~~~~l~~~~~-----~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~l 150 (997)
T 4a4z_A 83 TKTIYTSPIKALSNQKFRDFKETFD-----DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEF 150 (997)
T ss_dssp CEEEEEESCGGGHHHHHHHHHTTC-------CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcC-----CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCE
Confidence 3799999999999999999987643 37888899987643 34899999999999999888888899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
|||||||++.+++|...+..++..++. +.|++++|||+++ ..+++.++
T Consensus 151 vViDEaH~l~d~~~g~~~e~ii~~l~~------~v~iIlLSAT~~n--~~ef~~~l 198 (997)
T 4a4z_A 151 VIFDEVHYVNDQDRGVVWEEVIIMLPQ------HVKFILLSATVPN--TYEFANWI 198 (997)
T ss_dssp EEECCTTCCCTTCTTCCHHHHHHHSCT------TCEEEEEECCCTT--HHHHHHHH
T ss_pred EEEECcccccccchHHHHHHHHHhccc------CCCEEEEcCCCCC--hHHHHHHH
Confidence 999999999999999999999999987 6899999999974 33555554
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=2e-31 Score=302.75 Aligned_cols=205 Identities=18% Similarity=0.202 Sum_probs=149.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|||+||.|+++.+.+... .++...+|+.. +..+++|+|+||++| +.+..+.++++++|
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g------~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHG------IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHS------CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHhC------CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEE
Confidence 699999999999999987765543 45566777754 456799999999997 56778888999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE--EEccCCCCc--------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW--VDLKGEDAV-------- 435 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~--i~~~~~~~~-------- 435 (651)
||||||+ ++.+|...+..+++.++..+ ...++++|||++. .+. ...|.. +.+......
T Consensus 323 VlDEAH~-l~~~~~~~l~~Il~~l~~~~----~~llil~SAT~~~-~i~------~~~p~i~~v~~~~~~~i~~~~~~~~ 390 (666)
T 3o8b_A 323 ICDECHS-TDSTTILGIGTVLDQAETAG----ARLVVLATATPPG-SVT------VPHPNIEEVALSNTGEIPFYGKAIP 390 (666)
T ss_dssp EETTTTC-CSHHHHHHHHHHHHHTTTTT----CSEEEEEESSCTT-CCC------CCCTTEEEEECBSCSSEEETTEEEC
T ss_pred EEccchh-cCccHHHHHHHHHHhhhhcC----CceEEEECCCCCc-ccc------cCCcceEEEeecccchhHHHHhhhh
Confidence 9999965 56788888999999988631 2347788999986 321 122221 111111100
Q ss_pred --cCceEEEEEEeCcchHH--HHHHH------------------hhccccceeeccccccCCCCCCCCCEEE--------
Q psy8712 436 --PETVHHVVVKIDPQQDE--TWGRL------------------RSHIQTDGVHARDNARPGIDISGLPFII-------- 485 (651)
Q Consensus 436 --~~~i~~~~~~~~~~~~~--~~~~l------------------~~~~~~~~l~~td~~~rGIDip~v~~VI-------- 485 (651)
...-.+.+++++..+.. ....+ +......++++||.+++|||++ |++||
T Consensus 391 l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ 469 (666)
T 3o8b_A 391 IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQ 469 (666)
T ss_dssp GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEE
T ss_pred hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCC-CcEEEecCccccc
Confidence 01123678888886643 22223 1112336778899999999997 99988
Q ss_pred --EeC-----------CCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 486 --NMT-----------LPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 486 --n~d-----------lP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
||| +|.+.++|+||+||||| |+.|. ++|+++.+.
T Consensus 470 ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 470 TVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred ccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 788 99999999999999999 99999 999988543
No 58
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=3.9e-29 Score=274.75 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=90.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++++... +..++..+.|+........ +...++|+|+||+++...+..+.+.+.++++|
T Consensus 54 ~~liv~P~~~L~~q~~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~v 129 (494)
T 1wp9_A 54 KVLMLAPTKPLVLQHAESFRRLFNL---PPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLI 129 (494)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHBCS---CGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhCc---chhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEE
Confidence 6999999999999999999988632 2358888888887665433 33468999999999999998888889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
|+||||++.+......+...+..... ..+++++|||+.
T Consensus 130 IiDEaH~~~~~~~~~~~~~~~~~~~~------~~~~l~lTaTp~ 167 (494)
T 1wp9_A 130 VFDEAHRAVGNYAYVFIAREYKRQAK------NPLVIGLTASPG 167 (494)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHCS------SCCEEEEESCSC
T ss_pred EEECCcccCCCCcHHHHHHHHHhcCC------CCeEEEEecCCC
Confidence 99999999865444445554444333 479999999986
No 59
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=2.4e-31 Score=292.80 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=131.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcE-EEECchhhHHHHhCCCc------
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDI-VVGTPGRMEDLISGGHL------ 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dI-lV~TP~rL~~ll~~~~l------ 357 (651)
+++|||+||++||.|+++.++.+. +. ...+ .+ .|+||+++.+++..+.+
T Consensus 38 ~~~lil~Ptr~La~Q~~~~l~~~~-------v~--~~~~---------------~~~~v~Tp~~l~~~l~~~~l~~~~~~ 93 (440)
T 1yks_A 38 LRTLVLAPTRVVLSEMKEAFHGLD-------VK--FHTQ---------------AFSAHGSGREVIDAMCHATLTYRMLE 93 (440)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSC-------EE--EESS---------------CCCCCCCSSCCEEEEEHHHHHHHHTS
T ss_pred CeEEEEcchHHHHHHHHHHHhcCC-------eE--Eecc---------------cceeccCCccceeeecccchhHhhhC
Confidence 479999999999999999887432 22 1111 11 48999988766655443
Q ss_pred --ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE-EEccCCC-
Q psy8712 358 --SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW-VDLKGED- 433 (651)
Q Consensus 358 --~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~-i~~~~~~- 433 (651)
.++++++|||||||++ +.++...+..+...++. .++|++++|||+++ .+..++.. ..+.. +......
T Consensus 94 ~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~-----~~~~~l~~SAT~~~-~~~~~~~~--~~~~~~~~~~~~~~ 164 (440)
T 1yks_A 94 PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA-----NESATILMTATPPG-TSDEFPHS--NGEIEDVQTDIPSE 164 (440)
T ss_dssp SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-----TSCEEEEECSSCTT-CCCSSCCC--SSCEEEEECCCCSS
T ss_pred cccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-----CCceEEEEeCCCCc-hhhhhhhc--CCCeeEeeeccChH
Confidence 3789999999999998 33333333333322221 15899999999986 44433321 12221 1111010
Q ss_pred Ccc-------CceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCE
Q psy8712 434 AVP-------ETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPF 483 (651)
Q Consensus 434 ~~~-------~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~ 483 (651)
... +.-.+.+++|+..+.. ....+ +...+..++++|+.+++|||+| +++
T Consensus 165 ~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~ 243 (440)
T 1yks_A 165 PWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VER 243 (440)
T ss_dssp CCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceE
Confidence 000 1124578888876532 22222 2223557788999999999999 999
Q ss_pred EEE-------------------eCCCCChhhhhhhcCccccC-CCceEEEEeee
Q psy8712 484 IIN-------------------MTLPDDKANYVHRIGRVGRA-ERMGLAISLVS 517 (651)
Q Consensus 484 VIn-------------------~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~ 517 (651)
||| |+.|.+.++|+||+||+||. |+.|.|++|+.
T Consensus 244 VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 244 VLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 996 99999999999999999998 78999999984
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.6e-29 Score=315.25 Aligned_cols=231 Identities=18% Similarity=0.209 Sum_probs=158.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc--ccC
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL--SLT 360 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l--~l~ 360 (651)
++.++|+|+|+++||.|+++.+++....++ ++|..++|+.+...+. ..+++|+|+|||++..++++... .++
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~g---i~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~ 206 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYG---ITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQ 206 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTT---CCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCC---CEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhc
Confidence 345899999999999999999988766554 9999999998754321 24689999999999777765432 378
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccC-------------CeE
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYF-------------PTW 426 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-------------p~~ 426 (651)
++++|||||+|.+-+ ..+..++.++.++... .....+.|+|++|||++ +..++++++-.+ |+.
T Consensus 207 ~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~--N~~dvA~wL~~~~~~~~~~~~~~~RPvp 283 (1724)
T 4f92_B 207 LVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP--NYEDVATFLRVDPAKGLFYFDNSFRPVP 283 (1724)
T ss_dssp TEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT--THHHHHHHTTCCHHHHEEECCGGGCSSC
T ss_pred CcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC--CHHHHHHHhCCCCCCCeEEECCCCccCc
Confidence 999999999997765 5666666555432110 00011589999999998 577787765432 211
Q ss_pred EE-----ccCCCC----------------ccCceEEEEEEeCcchH----------------------------------
Q psy8712 427 VD-----LKGEDA----------------VPETVHHVVVKIDPQQD---------------------------------- 451 (651)
Q Consensus 427 i~-----~~~~~~----------------~~~~i~~~~~~~~~~~~---------------------------------- 451 (651)
+. +..... ....-++.++||.+++.
T Consensus 284 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1724)
T 4f92_B 284 LEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT 363 (1724)
T ss_dssp EEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHH
T ss_pred cEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHh
Confidence 11 000000 00011356777766531
Q ss_pred ------------------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEE----eC------CCC
Q psy8712 452 ------------------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----MT------LPD 491 (651)
Q Consensus 452 ------------------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d------lP~ 491 (651)
...+.+++.....+++||+.++.|||+|.+++||. || .|-
T Consensus 364 ~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~l 443 (1724)
T 4f92_B 364 EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTEL 443 (1724)
T ss_dssp TTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEEC
T ss_pred hhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccC
Confidence 11111133334566778888889999999999996 54 356
Q ss_pred ChhhhhhhcCccccCCC--ceEEEEeeeCCccc
Q psy8712 492 DKANYVHRIGRVGRAER--MGLAISLVSTVPEK 522 (651)
Q Consensus 492 s~~~YihRiGR~GR~g~--~G~ai~lv~~~de~ 522 (651)
++.+|+||+|||||.|. .|.+|.+.++.+..
T Consensus 444 s~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 444 GALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp CHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred CHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 89999999999999874 79999998875433
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2.5e-29 Score=281.59 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=147.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+++.++++.... .+++..+.|+.+...+ +...++|+|+||+.+. ......++++++|
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~---~~~~~~~~~~~li 229 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFS---HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVV---KQPKEWFSQFGMM 229 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSC---GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHT---TSCGGGGGGEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCC---ccceEEEecCCccccc---cccCCcEEEEeHHHHh---hchhhhhhcCCEE
Confidence 79999999999999999999886543 3788888888776554 4567999999999653 3344567889999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH-HHHhccCCeEEEccCC------------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM-AERLMYFPTWVDLKGE------------ 432 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l-~~~~l~~p~~i~~~~~------------ 432 (651)
||||||++.. +.+..+++.++. ..+++++|||+++ ....+ ....+.++..+.+...
T Consensus 230 IiDE~H~~~~----~~~~~il~~~~~------~~~~l~lSATp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 230 MNDECHLATG----KSISSIISGLNN------CMFKFGLSGSLRD-GKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp EEETGGGCCH----HHHHHHGGGCTT------CCEEEEEESCGGG-CSSCHHHHHHHHCSEECCCCCC---------CCE
T ss_pred EEECCcCCCc----ccHHHHHHhccc------CcEEEEEEeCCCC-CcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCce
Confidence 9999999875 457778888865 5799999999965 32221 1111112222111110
Q ss_pred ------------------CCc-------------------------cCceEEEEEEeCcchHHHH-HHH-----------
Q psy8712 433 ------------------DAV-------------------------PETVHHVVVKIDPQQDETW-GRL----------- 457 (651)
Q Consensus 433 ------------------~~~-------------------------~~~i~~~~~~~~~~~~~~~-~~l----------- 457 (651)
... ...-...++++.......+ ..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~ 378 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVS 378 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEES
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEE
Confidence 000 0012334444442211111 111
Q ss_pred --------------hhccccceeecc-ccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 458 --------------RSHIQTDGVHAR-DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 458 --------------~~~~~~~~l~~t-d~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+...+..++.+| +.+.+|+|+|++++||++++|.+...|+||+||+||.|..|.++++++-
T Consensus 379 g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 379 GEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp SSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 223345677888 9999999999999999999999999999999999999998866666654
No 62
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=6.3e-29 Score=275.00 Aligned_cols=205 Identities=17% Similarity=0.131 Sum_probs=131.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++||++|||+||.|+++.++.+ .+....+..... -..+..+.+.|.+.+...+... ..++++++
T Consensus 51 ~~~lvl~Ptr~La~Q~~~~l~g~---------~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~ 115 (459)
T 2z83_A 51 LRTAVLAPTRVVAAEMAEALRGL---------PVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNL 115 (459)
T ss_dssp CCEEEEECSHHHHHHHHHHTTTS---------CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSE
T ss_pred CcEEEECchHHHHHHHHHHhcCc---------eEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcE
Confidence 37999999999999999988632 221111111100 0123456778888876655443 45789999
Q ss_pred Eeeccchh-----hhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC--CCCcc-
Q psy8712 365 FVLDEADG-----LLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG--EDAVP- 436 (651)
Q Consensus 365 lViDEaD~-----ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~--~~~~~- 436 (651)
|||||||+ ++..+|...+.. . . +.|++++|||++. .+..+... ..|....... .....
T Consensus 116 iViDEaH~~~~~~~~~~~~~~~~~~----~-~------~~~~il~SAT~~~-~~~~~~~~--~~pi~~~~~~~~~~~~~~ 181 (459)
T 2z83_A 116 FVMDEAHFTDPASIAARGYIATKVE----L-G------EAAAIFMTATPPG-TTDPFPDS--NAPIHDLQDEIPDRAWSS 181 (459)
T ss_dssp EEESSTTCCSHHHHHHHHHHHHHHH----T-T------SCEEEEECSSCTT-CCCSSCCC--SSCEEEEECCCCSSCCSS
T ss_pred EEEECCccCCchhhHHHHHHHHHhc----c-C------CccEEEEEcCCCc-chhhhccC--CCCeEEecccCCcchhHH
Confidence 99999998 566555433221 1 2 5899999999986 54333221 3343321111 00000
Q ss_pred ------CceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCEEEE-
Q psy8712 437 ------ETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFIIN- 486 (651)
Q Consensus 437 ------~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn- 486 (651)
+.-.+.+++|++.... ....+ +......++.+|+.+++|||+|+ ++|||
T Consensus 182 ~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 182 GYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEEC
T ss_pred HHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEEC
Confidence 0123578888876532 22222 12234567889999999999999 99999
Q ss_pred -------------------eCCCCChhhhhhhcCccccCCC-ceEEEEeeeCC
Q psy8712 487 -------------------MTLPDDKANYVHRIGRVGRAER-MGLAISLVSTV 519 (651)
Q Consensus 487 -------------------~dlP~s~~~YihRiGR~GR~g~-~G~ai~lv~~~ 519 (651)
||+|.+..+|+||+|||||.|+ .|.+++|+++.
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7899999999999999999997 99999999875
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=2.7e-28 Score=285.05 Aligned_cols=215 Identities=19% Similarity=0.239 Sum_probs=142.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCc-cHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV-NVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~-~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|++|+|+||.|+++.+..... +++...+|+. .... ......+|+|+|||++.+.+... ..+.+++
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~------~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~ 210 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMD------VKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYS 210 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTT------CCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhC------Cchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCC
Confidence 4789999999999999887654332 2221112211 1000 11246899999999999876553 3578999
Q ss_pred eEeeccchh-hhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCc------
Q psy8712 364 FFVLDEADG-LLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAV------ 435 (651)
Q Consensus 364 ~lViDEaD~-ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~------ 435 (651)
+|||||+|. .++.. ....+..+....+ +.|++++|||++. ..+.+.+ .++..+.+.+....
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~~~-------~~~iIl~SAT~~~---~~l~~~~-~~~~vi~v~gr~~pv~~~~~ 279 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKRRP-------DLKIIIMSATLDA---EKFQRYF-NDAPLLAVPGRTYPVELYYT 279 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHHCT-------TCEEEEEESCSCC---HHHHHHT-TSCCEEECCCCCCCEEEECC
T ss_pred EEEecCccccccchHHHHHHHHHHHHhCC-------CceEEEEeccccH---HHHHHHh-cCCCcccccCcccceEEEEe
Confidence 999999995 66533 2333455554443 4799999999975 3344433 33333333322110
Q ss_pred ----c----------------CceEEEEEEeCcchHHH--HHHH------------------------------------
Q psy8712 436 ----P----------------ETVHHVVVKIDPQQDET--WGRL------------------------------------ 457 (651)
Q Consensus 436 ----~----------------~~i~~~~~~~~~~~~~~--~~~l------------------------------------ 457 (651)
. ..-...+++++...+.. ...+
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 0 01235677777654211 1111
Q ss_pred hh-----ccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhhhcCccccCCCceEEEE
Q psy8712 458 RS-----HIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVHRIGRVGRAERMGLAIS 514 (651)
Q Consensus 458 ~~-----~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~YihRiGR~GR~g~~G~ai~ 514 (651)
+. .....++.+|+.+++|||+|+|++||++++ |.+..+|+||+|||||. +.|.||.
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~ 438 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 438 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEE
Confidence 11 234567888999999999999999999888 89999999999999999 8999999
Q ss_pred eeeCCcc
Q psy8712 515 LVSTVPE 521 (651)
Q Consensus 515 lv~~~de 521 (651)
|+++.+.
T Consensus 439 l~~~~~~ 445 (773)
T 2xau_A 439 LYTEEAF 445 (773)
T ss_dssp SSCHHHH
T ss_pred EecHHHh
Confidence 9987543
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=7e-28 Score=267.14 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=138.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCee-EEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIR-ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~-v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
++|||+||++|+.|+.+.++.|+ ++ +..+.|+.. ...+|+|+||+.+...+.. ..+++++
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~~-------~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIFG-------EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGGC-------GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhCC-------CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCE
Confidence 68999999999999999988852 67 777777664 2479999999998775541 1256899
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChH------------------HHHHHHHHhccCCeE
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDF------------------DVKKMAERLMYFPTW 426 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~------------------~v~~l~~~~l~~p~~ 426 (651)
|||||||++.+..|. .+++.++. .+++++|||+... ...++...++.++..
T Consensus 196 iIvDEaH~~~~~~~~----~~~~~~~~-------~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~ 264 (472)
T 2fwr_A 196 LIFDEVHHLPAESYV----QIAQMSIA-------PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTI 264 (472)
T ss_dssp EEEETGGGTTSTTTH----HHHHTCCC-------SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEE
T ss_pred EEEECCcCCCChHHH----HHHHhcCC-------CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEE
Confidence 999999999887664 35555543 6899999998621 233333333333221
Q ss_pred --EEccCCCC------------------------cc--------------------------------------------
Q psy8712 427 --VDLKGEDA------------------------VP-------------------------------------------- 436 (651)
Q Consensus 427 --i~~~~~~~------------------------~~-------------------------------------------- 436 (651)
+.+..... ..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 344 (472)
T 2fwr_A 265 KRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREIL 344 (472)
T ss_dssp CCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 11110000 00
Q ss_pred --CceEEEEEEeCcchHH----------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCC
Q psy8712 437 --ETVHHVVVKIDPQQDE----------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDD 492 (651)
Q Consensus 437 --~~i~~~~~~~~~~~~~----------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s 492 (651)
..-.+.+++++..+.. .....+......++.+|+.+.+|+|+|++++||+||.|.+
T Consensus 345 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s 424 (472)
T 2fwr_A 345 ERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGS 424 (472)
T ss_dssp HHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSC
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCC
Confidence 0012234444433211 1111133345677889999999999999999999999999
Q ss_pred hhhhhhhcCccccCCC---ceEEEEeeeCC
Q psy8712 493 KANYVHRIGRVGRAER---MGLAISLVSTV 519 (651)
Q Consensus 493 ~~~YihRiGR~GR~g~---~G~ai~lv~~~ 519 (651)
+..|+||+||+||.|. ...++.|++..
T Consensus 425 ~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 425 AREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999984 34677778764
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=3.3e-26 Score=262.49 Aligned_cols=206 Identities=16% Similarity=0.078 Sum_probs=142.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEe
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFV 366 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lV 366 (651)
.+|++|||+||.|+++.++.++ +++..++|+...... .-....+++++|++.+. ....+++||
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~g-------~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAAG-------VPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-------CCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhcC-------CcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEE
Confidence 5889999999999999998863 778888887664100 00112566777765432 246789999
Q ss_pred eccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEcc-CC------CCc---c
Q psy8712 367 LDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK-GE------DAV---P 436 (651)
Q Consensus 367 iDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~-~~------~~~---~ 436 (651)
|||||++++.+|+..+..++..++.. ..|++++|||.+ .+..+...... +..+... .. ... .
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~-----~i~il~~SAT~~--~i~~l~~~~~~-~~~v~~~~r~~~l~~~~~~l~~l 316 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAE-----EVHLCGEPAAID--LVMELMYTTGE-EVEVRDYKRLTPISVLDHALESL 316 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEE-----EEEEEECGGGHH--HHHHHHHHHTC-CEEEEECCCSSCEEECSSCCCSG
T ss_pred EecceecCCccchHHHHHHHHccCcc-----ceEEEeccchHH--HHHHHHHhcCC-ceEEEEeeecchHHHHHHHHHHH
Confidence 99999999999999999999888732 689999999974 66666655422 2221110 00 000 0
Q ss_pred Cce-EEEEEEeCcchH---------------------------HHHHHHhhc--cccceeeccccccCCCCCCCCCEEEE
Q psy8712 437 ETV-HHVVVKIDPQQD---------------------------ETWGRLRSH--IQTDGVHARDNARPGIDISGLPFIIN 486 (651)
Q Consensus 437 ~~i-~~~~~~~~~~~~---------------------------~~~~~l~~~--~~~~~l~~td~~~rGIDip~v~~VIn 486 (651)
..+ ...++++.+.++ ......+.. ...+++++|+.+++|||+ +|++||+
T Consensus 317 ~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 317 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIF 395 (677)
T ss_dssp GGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEE
T ss_pred HhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEE
Confidence 000 012344555331 111222333 457889999999999999 8999999
Q ss_pred eCC--------------CCChhhhhhhcCccccCCCc---eEEEEeeeC
Q psy8712 487 MTL--------------PDDKANYVHRIGRVGRAERM---GLAISLVST 518 (651)
Q Consensus 487 ~dl--------------P~s~~~YihRiGR~GR~g~~---G~ai~lv~~ 518 (651)
+++ |.+..+|+||+|||||.|+. |.|+.+...
T Consensus 396 ~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 396 YSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp SCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999 77999999999999999964 888877654
No 66
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=99.93 E-value=3.1e-27 Score=234.35 Aligned_cols=167 Identities=29% Similarity=0.591 Sum_probs=150.8
Q ss_pred ccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEecc---CCceeecccccccccc--CCC
Q psy8712 85 ISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTD---EGLCRVGWSTSQAVRD--LGT 159 (651)
Q Consensus 85 ~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~--~g~ 159 (651)
..+.+.|+.+++...+.|++|++.+++ .+.|.++|++.+++ +|+|||||+|.+ .+.+++||++..+.++ +|.
T Consensus 9 ~~~~v~ld~~d~~~~l~ls~d~l~v~~--~~~~~~vra~~~v~-~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~~~G~ 85 (213)
T 3toj_A 9 LYERVLLALHDRAPQLKISDDRLTVVG--EKGYSMVRASHGVR-KGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGY 85 (213)
T ss_dssp EECCCCEEEEEECTTSEECTTSSEEEC--CSSCEEEEESCCBS-SEEEEEEEEEEECCTTCEEEEEEECTTSCTTSCTTS
T ss_pred cCCeEEechhhCCCCEEEcCCCcEEEe--CCceeEEEeCCCcc-CCeEEEEEEEeecCCCceEEEEeccCCcccccCCCC
Confidence 457889999999999999999998876 57899999999998 799999999998 7999999999999888 999
Q ss_pred CCCCCCc-CCCCccCCCcccCccCcccCCCcccccccccCC--------ceeeeeccCcccccccccchhhhhccCcchh
Q psy8712 160 DRFGFGF-GGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDN--------MTVAFTKNGQHLGLAFNISQQLKNSAFYPAV 230 (651)
Q Consensus 160 ~~~~~~~-gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~--------~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~ 230 (651)
|.+||+| +..|++-|+.....||++|+.||||||+||+++ |+|+|+|||+.+|.||+- +....+||+|
T Consensus 86 d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~---~~~~~lyPav 162 (213)
T 3toj_A 86 DKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD---IFEGVYFPAI 162 (213)
T ss_dssp STTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEES---CCSSCBEEEE
T ss_pred CCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEc---CCCCcEEEEE
Confidence 9999999 679999999889999999999999999999987 799999999999999984 3456899999
Q ss_pred hc-cccccccccCCCCCCCCCCC-CeEEEe
Q psy8712 231 VL-KNAEMSFNFGATPFKHEPPK-DYIAVC 258 (651)
Q Consensus 231 ~~-k~~~~~~~f~~~~~~~~~~~-~~i~~~ 258 (651)
.+ +++++.+|||. +|+++|+. .+..+.
T Consensus 163 sl~~~~~v~~NFG~-~F~~~p~~~~~~~~~ 191 (213)
T 3toj_A 163 SLYKSCTVSINFGP-CFKYPPKDLTYRPMS 191 (213)
T ss_dssp EEESSCEEEEECSS-SCSSCCSSCCCEEGG
T ss_pred EcCCCCEEEEECCC-CCccCCCCCceEcHH
Confidence 76 88999999999 99999874 454443
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.93 E-value=3e-26 Score=251.49 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=128.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|||+||++||.|+++.+.. +.+....|+... .-..+.-+.+.|.+.+.+.+.. ...++++++
T Consensus 32 ~~~lvl~Pt~~La~Q~~~~~~~---------~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~ 96 (431)
T 2v6i_A 32 LRTVILAPTRVVASEMYEALRG---------EPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNL 96 (431)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT---------SCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSE
T ss_pred CCEEEECcHHHHHHHHHHHhCC---------CeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCE
Confidence 3799999999999999987751 344444443221 1112345667788888665554 456899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcC-CCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEc--cCCCCc------
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQI-PKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDL--KGEDAV------ 435 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~l-p~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~--~~~~~~------ 435 (651)
|||||||++ +.++......+.... +. ++|++++|||+++ .+..+... +.|. +.+ ......
T Consensus 97 vViDEaH~~-~~~~~~~~~~l~~~~~~~------~~~~l~~SAT~~~-~~~~~~~~--~~~i-~~~~~~~~~~~~~~~~~ 165 (431)
T 2v6i_A 97 YIMDEAHFL-DPASVAARGYIETRVSMG------DAGAIFMTATPPG-TTEAFPPS--NSPI-IDEETRIPDKAWNSGYE 165 (431)
T ss_dssp EEEESTTCC-SHHHHHHHHHHHHHHHTT------SCEEEEEESSCTT-CCCSSCCC--SSCC-EEEECCCCSSCCSSCCH
T ss_pred EEEeCCccC-CccHHHHHHHHHHHhhCC------CCcEEEEeCCCCc-chhhhcCC--CCce-eeccccCCHHHHHHHHH
Confidence 999999997 433333333333332 22 5899999999986 43322211 1222 121 100000
Q ss_pred --cCceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCE-------
Q psy8712 436 --PETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPF------- 483 (651)
Q Consensus 436 --~~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~------- 483 (651)
.+.-.+.+++|+..+.. ....+ +...+.+++++|+.+.+|||+| +.+
T Consensus 166 ~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 166 WITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp HHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred HHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 00113577888776432 12222 2233567788999999999999 655
Q ss_pred ----------EEEeCCCCChhhhhhhcCccccCCC-ceEEEEeee
Q psy8712 484 ----------IINMTLPDDKANYVHRIGRVGRAER-MGLAISLVS 517 (651)
Q Consensus 484 ----------VIn~dlP~s~~~YihRiGR~GR~g~-~G~ai~lv~ 517 (651)
||+++.|.+..+|+||+||+||.|. .|.++++..
T Consensus 245 ~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 245 IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp EEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred ccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 6889999999999999999999985 555665553
No 68
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=99.92 E-value=2e-26 Score=220.56 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=132.6
Q ss_pred eccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccC---Cceeecccccccccc--CCCCCCCCCc
Q psy8712 92 SVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDE---GLCRVGWSTSQAVRD--LGTDRFGFGF 166 (651)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~--~g~~~~~~~~ 166 (651)
+.+||...+.++.|.+.++.+ ...|.++|++.++. +|+||||++|.+. +.++|||++..+.++ +|.|..||+|
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~-~~~~~~vra~~p~~-~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~gy 80 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGN-SGEVGCYVASRPLT-KDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAY 80 (171)
T ss_dssp ---CEEESEEEETTEEEECCC-SSCCEEEECSSCCC-SSSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEEE
T ss_pred CcccCcceEEEcCCEEEEeCC-CCceeEEEECCCCC-CCCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEEE
Confidence 567899999999999999887 46899999999997 7999999999987 999999999998877 8999999999
Q ss_pred CC-CCccCCC-cccCccCcccCCCcccccccccC-----CceeeeeccCcccccccccchhhhhccCcchhhcc--cccc
Q psy8712 167 GG-TGKKSNN-KQFDNYGEAFGMHDVIGCLLDLD-----NMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLK--NAEM 237 (651)
Q Consensus 167 gg-~~~ks~~-~~~~~~g~~~~~~d~ig~~~~~~-----~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k--~~~~ 237 (651)
.| .|++-|+ .+.+.||++|+.||||||+||++ .++|+|+|||+.+|.||.. +....+||+|.+. |+++
T Consensus 81 ~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~~~~~lyPaV~l~~~g~~v 157 (171)
T 2yyo_A 81 HADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---MSPDGLFPAVGMHSLGEEV 157 (171)
T ss_dssp ETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---SCSSSCEEEEEECSTTEEE
T ss_pred EcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecC---CcCCCEEEEEEEecCCCEE
Confidence 99 5888886 46899999999999999999998 4999999999999999975 3457999999999 7999
Q ss_pred ccccCCCCCCCCCC
Q psy8712 238 SFNFGATPFKHEPP 251 (651)
Q Consensus 238 ~~~f~~~~~~~~~~ 251 (651)
.+|||. ++..||+
T Consensus 158 ~vNFG~-~~~~pp~ 170 (171)
T 2yyo_A 158 RLHLNA-ELSGPSS 170 (171)
T ss_dssp EEETTC-CC-----
T ss_pred EEECCC-CCcCCCC
Confidence 999998 5666653
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.92 E-value=2.6e-25 Score=253.55 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=112.3
Q ss_pred CCeEEEEeCCHHHHHHHH-HHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC----CCcc
Q psy8712 284 APQAIIIEPSRELAEQTF-NQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG----GHLS 358 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~-~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~----~~l~ 358 (651)
.+++|||+||++|+.|+. +.++.++. .+..+.++ .+..+.+|+|+||++|...... ..+.
T Consensus 235 ~~~vlil~P~~~L~~Q~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 235 KPRILFLADRNVLVDDPKDKTFTPFGD-------ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp CCCEEEEEC-----------CCTTTCS-------SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcch-------hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCC
Confidence 468999999999999999 77776643 22222222 1235689999999999887642 2345
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH-----------------Hhc
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE-----------------RLM 421 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~-----------------~~l 421 (651)
..++++|||||||++...+ ...+..++..++. .+++++|||.....-..+.. .++
T Consensus 300 ~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~-------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l 371 (590)
T 3h1t_A 300 QDFFDLIIIDECHRGSARD-NSNWREILEYFEP-------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFL 371 (590)
T ss_dssp TTSCSEEEESCCC----------CHHHHHHSTT-------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSS
T ss_pred CCccCEEEEECCccccccc-hHHHHHHHHhCCc-------ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCcc
Confidence 6789999999999997642 2456777777764 68999999976311111111 112
Q ss_pred cCCeEEEccCCCC--------------------------------------------c------cCceEEEEEEeCcchH
Q psy8712 422 YFPTWVDLKGEDA--------------------------------------------V------PETVHHVVVKIDPQQD 451 (651)
Q Consensus 422 ~~p~~i~~~~~~~--------------------------------------------~------~~~i~~~~~~~~~~~~ 451 (651)
..+..+.+..... . .....+.+++|+....
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~ 451 (590)
T 3h1t_A 372 APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEH 451 (590)
T ss_dssp CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHH
T ss_pred CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHH
Confidence 2222211111000 0 0011357777776542
Q ss_pred HHH--HHH--------------------------------hhccccc---eeeccccccCCCCCCCCCEEEEeCCCCChh
Q psy8712 452 ETW--GRL--------------------------------RSHIQTD---GVHARDNARPGIDISGLPFIINMTLPDDKA 494 (651)
Q Consensus 452 ~~~--~~l--------------------------------~~~~~~~---~l~~td~~~rGIDip~v~~VIn~dlP~s~~ 494 (651)
... ..+ +...... ++.+++.+.+|||+|++++||+++.|.+..
T Consensus 452 a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~ 531 (590)
T 3h1t_A 452 ADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMS 531 (590)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHH
T ss_pred HHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChH
Confidence 111 111 1111122 567789999999999999999999999999
Q ss_pred hhhhhcCccccCCC
Q psy8712 495 NYVHRIGRVGRAER 508 (651)
Q Consensus 495 ~YihRiGR~GR~g~ 508 (651)
.|+||+||+||.+.
T Consensus 532 ~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 532 EFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHTTSCCCBG
T ss_pred HHHHHHhhhcccCc
Confidence 99999999999765
No 70
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=5.9e-23 Score=202.49 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=79.0
Q ss_pred CeEEEEeCCHHHHHH-HHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC------c
Q psy8712 285 PQAIIIEPSRELAEQ-TFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH------L 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Q-i~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~------l 357 (651)
+++||++||++|+.| +.+.++.+... .+++..+.|+.........+..+++|+|+||+++.+++.... +
T Consensus 83 ~~~lil~p~~~L~~q~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 158 (216)
T 3b6e_A 83 GKVIVLVNKVLLVEQLFRKEFQPFLKK----WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGV 158 (216)
T ss_dssp CCEEEEESSHHHHHHHHHHTHHHHHTT----TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CC
T ss_pred CcEEEEECHHHHHHHHHHHHHHHHhcc----CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccccccc
Confidence 479999999999999 78888888754 378888888877665555555679999999999999887653 5
Q ss_pred ccCCcceEeeccchhhhhccchHHHH-HHHhcC-CC------ccCCCCceeEEEEeec
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLID-RMHKQI-PK------ITSDGKRLQMIVCSAT 407 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~-~il~~l-p~------~~~~~~~~Q~l~~SAT 407 (651)
.+.++++|||||||++.+.++...+. .++... +. ..+...+++++++|||
T Consensus 159 ~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred chhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 67899999999999998876655543 222211 10 0001125899999998
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=1.7e-21 Score=232.42 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=81.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCC--cccCC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGH--LSLTH 361 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~--l~l~~ 361 (651)
+++|||+|+++|+.|+.+.++.+... .+.++.+.......+. .+++|+|+||++|.+++.... ..++.
T Consensus 331 ~rvLvlvpr~eL~~Q~~~~f~~f~~~---------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 331 DKVFFVVDRKDLDYQTMKEYQRFSPD---------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp CEEEEEECGGGCCHHHHHHHHTTSTT---------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhccc---------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 47999999999999999999887642 1235555556666664 578999999999998876532 24567
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
..+||+||||++... .....|...+|. .++++||||+.
T Consensus 402 ~~lvIiDEAHrs~~~---~~~~~I~~~~p~-------a~~lgfTATP~ 439 (1038)
T 2w00_A 402 QVVFIFDECHRSQFG---EAQKNLKKKFKR-------YYQFGFTGTPI 439 (1038)
T ss_dssp CEEEEEESCCTTHHH---HHHHHHHHHCSS-------EEEEEEESSCC
T ss_pred ccEEEEEccchhcch---HHHHHHHHhCCc-------ccEEEEeCCcc
Confidence 889999999998643 335566677764 79999999986
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=2.4e-20 Score=209.62 Aligned_cols=62 Identities=24% Similarity=0.199 Sum_probs=56.1
Q ss_pred ccceeeccccccCCCCCC--------CCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 462 QTDGVHARDNARPGIDIS--------GLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip--------~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
...++++||.+.||+||+ +..+||||++|.+.+.|+||+|||||+|++|.+++|++.+|+..
T Consensus 522 ~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 522 KGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp TTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred CCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 345677899999999998 66799999999999999999999999999999999999987554
No 73
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=196.27 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=85.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++++++|+++|+.|+.+.+....... .+..+........ .....+++|+|+||+++.+++.. .++++++
T Consensus 110 ~~~l~~~p~~~la~q~~~~~~~~~~~~--~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~ 179 (235)
T 3llm_A 110 CNIVVTQPRRISAVSVAERVAFERGEE--PGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISH 179 (235)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTTCC--TTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCE
T ss_pred eEEEEeccchHHHHHHHHHHHHHhccc--cCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcE
Confidence 478999999999999988886554321 1122222111111 11124689999999999998876 4899999
Q ss_pred Eeeccchhh-hhccch-HHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCe
Q psy8712 365 FVLDEADGL-LKQGYG-NLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT 425 (651)
Q Consensus 365 lViDEaD~l-l~~gf~-~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~ 425 (651)
|||||||.+ ++.+|. ..++.++...+ +.|+++||||++. +. +.+.+...|.
T Consensus 180 lVlDEah~~~~~~~~~~~~l~~i~~~~~-------~~~~il~SAT~~~-~~--~~~~~~~~pv 232 (235)
T 3llm_A 180 VIVDEIHERDINTDFLLVVLRDVVQAYP-------EVRIVLMSATIDT-SM--FCEYFFNCPI 232 (235)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHHCT-------TSEEEEEECSSCC-HH--HHHHTTSCCC
T ss_pred EEEECCccCCcchHHHHHHHHHHHhhCC-------CCeEEEEecCCCH-HH--HHHHcCCCCE
Confidence 999999996 777776 46777777665 3799999999987 43 6666665553
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.82 E-value=1e-19 Score=202.91 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=72.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+|+ .|+.|..+.++++.. .+++..+.|+... ......+|+|+||+++..... +.....++|
T Consensus 88 ~~LIv~P~-~l~~qw~~e~~~~~~-----~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~v 153 (500)
T 1z63_A 88 PSLVICPL-SVLKNWEEELSKFAP-----HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYI 153 (500)
T ss_dssp SEEEEECS-TTHHHHHHHHHHHCT-----TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEE
T ss_pred CEEEEccH-HHHHHHHHHHHHHCC-----CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEE
Confidence 58999995 588999999988864 3566666665421 112357999999998865433 344567899
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
|+||||++-+.. ....+.+..++. .+.+++|||...
T Consensus 154 IvDEaH~~kn~~--~~~~~~l~~l~~-------~~~l~LTaTP~~ 189 (500)
T 1z63_A 154 VIDEAQNIKNPQ--TKIFKAVKELKS-------KYRIALTGTPIE 189 (500)
T ss_dssp EEETGGGGSCTT--SHHHHHHHTSCE-------EEEEEECSSCST
T ss_pred EEeCccccCCHh--HHHHHHHHhhcc-------CcEEEEecCCCC
Confidence 999999997543 234455555643 678999999743
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.81 E-value=4.1e-20 Score=221.36 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=49.4
Q ss_pred cceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEee
Q psy8712 463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516 (651)
Q Consensus 463 ~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv 516 (651)
..++.+|+...+|||+|++++||+||+|.++..|+||+||+||.|+.|.+++++
T Consensus 557 ~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 557 AQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred ccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 778889999999999999999999999999999999999999999998655543
No 76
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=1.4e-19 Score=186.97 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=82.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++++.... ...+..+.+|..... ......+|+|+||+++.. .....++++++|
T Consensus 159 ~~lil~Pt~~L~~q~~~~l~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~---~~~~~~~~~~~v 229 (282)
T 1rif_A 159 KILIIVPTTALTTQMADDFVDYRLFS---HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVK---QPKEWFSQFGMM 229 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTSCC---GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTT---SCGGGGGGEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHhcccc---cceEEEEeCCCcchh---hhccCCcEEEEchHHHHh---hHHHHHhhCCEE
Confidence 68999999999999999999886533 367778888765432 223468999999987643 333456789999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
||||||++.+ +.+..+++.++. ..+++++|||+++
T Consensus 230 IiDEaH~~~~----~~~~~il~~~~~------~~~~l~lSATp~~ 264 (282)
T 1rif_A 230 MNDECHLATG----KSISSIISGLNN------CMFKFGLSGSLRD 264 (282)
T ss_dssp EEETGGGCCH----HHHHHHTTTCTT------CCEEEEECSSCCT
T ss_pred EEECCccCCc----ccHHHHHHHhhc------CCeEEEEeCCCCC
Confidence 9999999974 367788888765 5899999999975
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=2.1e-19 Score=205.44 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=82.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
+++||+||++||.|+++++..+..+++ +++.+++||.+...... ..++||+||||++| .|+++.+. +.
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lG---Lsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~ 196 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLG---LSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLV 196 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTT---CCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcc
Confidence 689999999999999999999999886 99999999988544433 34699999999999 88887663 56
Q ss_pred cC---CcceEeeccchhhh-hccc---------------hHHHHHHHhcCCC
Q psy8712 359 LT---HCRFFVLDEADGLL-KQGY---------------GNLIDRMHKQIPK 391 (651)
Q Consensus 359 l~---~l~~lViDEaD~ll-~~gf---------------~~~i~~il~~lp~ 391 (651)
++ ++.++||||||.|+ +.+. +..+..++..++.
T Consensus 197 ~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 197 LRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp SCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred cccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 78 99999999999998 3322 2356677777764
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.3e-16 Score=160.72 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=72.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCee-EEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIR-ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~-v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
++||++||++|+.|+.+.++++. ++ +..+.|+.. ...+|+|+||+.+...... ..+++++
T Consensus 135 ~~liv~P~~~L~~q~~~~~~~~~-------~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~l 195 (237)
T 2fz4_A 135 PTLIVVPTLALAEQWKERLGIFG-------EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFML 195 (237)
T ss_dssp CEEEEESSHHHHHHHHHHHGGGC-------GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHhCC-------CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCE
Confidence 58999999999999999988742 66 667776654 2579999999998765541 1256899
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
|||||||++.+..+ ..++..++. .+++++|||++.
T Consensus 196 lIiDEaH~l~~~~~----~~i~~~~~~-------~~~l~LSATp~r 230 (237)
T 2fz4_A 196 LIFDEVHHLPAESY----VQIAQMSIA-------PFRLGLTATFER 230 (237)
T ss_dssp EEEECSSCCCTTTH----HHHHHTCCC-------SEEEEEEESCC-
T ss_pred EEEECCccCCChHH----HHHHHhccC-------CEEEEEecCCCC
Confidence 99999999987554 345555553 689999999875
No 79
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.65 E-value=3.4e-17 Score=188.47 Aligned_cols=218 Identities=17% Similarity=0.205 Sum_probs=136.4
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc--cchHHHH----HHHhc---CC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ--GYGNLID----RMHKQ---IP 390 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~--gf~~~i~----~il~~---lp 390 (651)
.+.|+.++..+...++.+ +||++|++++.... +|||||+|+|++. ++...+. .+... +|
T Consensus 302 ~~~G~e~~~~~~~~~~~g-----~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp 369 (661)
T 2d7d_A 302 FCSGIENYSRHLTLRPPG-----STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLP 369 (661)
T ss_dssp CCTTGGGGHHHHTTCCTT-----CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred eeccchhHHHHHccccCC-----CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 345777777777666655 89999999885432 8999999998742 2222211 11111 12
Q ss_pred Ccc---C------CCCceeEEEEeeccChHHHHHHHHHh---------ccCCeEEEccCCCCc-----------cCceEE
Q psy8712 391 KIT---S------DGKRLQMIVCSATLHDFDVKKMAERL---------MYFPTWVDLKGEDAV-----------PETVHH 441 (651)
Q Consensus 391 ~~~---~------~~~~~Q~l~~SATl~~~~v~~l~~~~---------l~~p~~i~~~~~~~~-----------~~~i~~ 441 (651)
... + .....|+++||||+++ ........+ +.+|. +.+...... ...-.+
T Consensus 370 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~~~r~~~l~~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~ 447 (661)
T 2d7d_A 370 SALDNRPLRFEEFEKHMHNIVYVSATPGP-YEIEHTDEMVEQIIRPTGLLDPL-IDVRPIEGQIDDLIGEIQARIERNER 447 (661)
T ss_dssp GGGGSCCCCHHHHHHTCSEEEEECSSCCH-HHHHHCSSCEEECCCTTCCCCCE-EEEECSTTHHHHHHHHHHHHHTTTCE
T ss_pred hhhhcccccHHHHhccCCCEEEEecCCCh-hHHHhhhCeeeeeecccCCCCCe-EEEecccchHHHHHHHHHHHHhcCCe
Confidence 100 0 0024799999999975 332221111 11222 222111110 011236
Q ss_pred EEEEeCcchHH--HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCC-----
Q psy8712 442 VVVKIDPQQDE--TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTL----- 489 (651)
Q Consensus 442 ~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl----- 489 (651)
++++|++.... ....+ ++.....++++|+.+.+|+|+|+|++||++|.
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC
Confidence 77777765422 11112 12234567889999999999999999999998
Q ss_pred CCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchh
Q psy8712 490 PDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFD 569 (651)
Q Consensus 490 P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 569 (651)
|.+.++|+||+|||||. ..|.|++|+++.+...... .+
T Consensus 528 p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~-----------------------------------------i~ 565 (661)
T 2d7d_A 528 LRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA-----------------------------------------IN 565 (661)
T ss_dssp TTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH-----------------------------------------HH
T ss_pred CCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH-----------------------------------------HH
Confidence 99999999999999999 7899999998753322111 15
Q ss_pred HHHHHHHHHHHhcCcccccccccc
Q psy8712 570 EKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 570 e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+...++.|+..++......|..+.
T Consensus 566 ~~~~~r~i~~~~~~~~~~~p~~~~ 589 (661)
T 2d7d_A 566 ETKRRREQQERFNEEHGITPKTIN 589 (661)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHhhhhcCCCCCchh
Confidence 667778888888877776665544
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.1e-15 Score=173.07 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=73.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh------------ccCCcEEEECchhhHHHHh
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL------------SSGVDIVVGTPGRMEDLIS 353 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L------------~~~~dIlV~TP~rL~~ll~ 353 (651)
.+|||+| ..|+.|..+.+.++.. .+++.+..|+.......... ....+|+|+|++.+.....
T Consensus 288 ~~LIV~P-~sll~qW~~E~~~~~p-----~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~ 361 (800)
T 3mwy_W 288 PHIIVVP-LSTMPAWLDTFEKWAP-----DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA 361 (800)
T ss_dssp CEEEECC-TTTHHHHHHHHHHHST-----TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH
T ss_pred CEEEEEC-chHHHHHHHHHHHHCC-----CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH
Confidence 4799999 6788888888888763 47777777776654443321 2357899999999865332
Q ss_pred CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 354 GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 354 ~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.+...+..+|||||||++-+ ........+..++. ...+++|||.
T Consensus 362 --~l~~~~w~~vIvDEaH~lkn--~~s~~~~~l~~l~~-------~~rl~LTgTP 405 (800)
T 3mwy_W 362 --ELGSIKWQFMAVDEAHRLKN--AESSLYESLNSFKV-------ANRMLITGTP 405 (800)
T ss_dssp --HHHTSEEEEEEETTGGGGCC--SSSHHHHHHTTSEE-------EEEEEECSCC
T ss_pred --HHhcCCcceeehhhhhhhcC--chhHHHHHHHHhhh-------ccEEEeeCCc
Confidence 12223568999999999854 23345555666643 5678999997
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.63 E-value=1.1e-14 Score=167.29 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=71.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH--HH-Hhcc-----CCcEEEECchhhHHHHhCCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ--MS-VLSS-----GVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q--~~-~L~~-----~~dIlV~TP~rL~~ll~~~~l 357 (651)
++|||+|+ .|+.|..+++.++... .+.+..+.+|...... .. .+.. ..+|+|+|++.+.... ..+
T Consensus 116 ~~LiV~P~-sll~qW~~E~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l 188 (644)
T 1z3i_X 116 KVIVVSPS-SLVRNWYNEVGKWLGG----RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVL 188 (644)
T ss_dssp CEEEEECH-HHHHHHHHHHHHHHGG----GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTT
T ss_pred cEEEEecH-HHHHHHHHHHHHHcCC----CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHh
Confidence 68999997 8899999999888653 2667777777643322 11 1111 4789999999886543 233
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
......+||+||||++-+.. ......+..++. ...+++|||.
T Consensus 189 ~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l~~-------~~rl~LTgTP 230 (644)
T 1z3i_X 189 HKGKVGLVICDEGHRLKNSD--NQTYLALNSMNA-------QRRVLISGTP 230 (644)
T ss_dssp TTSCCCEEEETTGGGCCTTC--HHHHHHHHHHCC-------SEEEEECSSC
T ss_pred hcCCccEEEEECceecCChh--hHHHHHHHhccc-------CcEEEEecCc
Confidence 44577899999999985432 223333344433 4678999996
No 82
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.59 E-value=4e-16 Score=154.53 Aligned_cols=149 Identities=21% Similarity=0.274 Sum_probs=118.2
Q ss_pred eeeeccccccccccCCCCcccccc--cccccccccccccccCCceeEEEEEecc---CCceeeccccccccc-------c
Q psy8712 89 WILSVWDRDTAMAITPEGLRCQSR--EQKEWHGCRANKGVYGRGKYYYEATVTD---EGLCRVGWSTSQAVR-------D 156 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~-------~ 156 (651)
+.|+.+++...+.+++|+..+-.+ ....|...+++.|++ +|||||||+|.+ .+-+++||++....+ .
T Consensus 33 ~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~-sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~~~ 111 (212)
T 2jk9_A 33 HSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYT-RGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTL 111 (212)
T ss_dssp TSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBC-SSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSCCC
T ss_pred cccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCcc-CCeEEEEEEEecccCCCcEEEEEEcCCccccccCcccc
Confidence 556667777777777765321111 234688899999997 799999999994 678999999998875 2
Q ss_pred CCCCCCCCCcCC-CCccCCCcccC---------ccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccC
Q psy8712 157 LGTDRFGFGFGG-TGKKSNNKQFD---------NYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAF 226 (651)
Q Consensus 157 ~g~~~~~~~~gg-~~~ks~~~~~~---------~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~ 226 (651)
+|.+..+|+|.+ .|++.|+.+.. .||+.|..+|+|||+||.+.|+|+|.+||+.+|.+|.-. ..+++
T Consensus 112 ~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~---~~~~l 188 (212)
T 2jk9_A 112 VGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGL---KGKKL 188 (212)
T ss_dssp TTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCC---TTCCB
T ss_pred cccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccC---CCCEE
Confidence 699999999986 66666665432 267889999999999999999999999999999999853 46799
Q ss_pred cchhhcc--cccccccc
Q psy8712 227 YPAVVLK--NAEMSFNF 241 (651)
Q Consensus 227 ~p~~~~k--~~~~~~~f 241 (651)
||++.+. |+++.++|
T Consensus 189 ~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 189 YPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp EEEEEECCTTCEEEEEE
T ss_pred eeEEEEEcCCcEEEEEE
Confidence 9999984 77888777
No 83
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.54 E-value=2.9e-15 Score=148.47 Aligned_cols=150 Identities=25% Similarity=0.355 Sum_probs=118.5
Q ss_pred ceeeeccccccccccCCCCcccccc-cccccccccccccccCCceeEEEEEeccC---Cceeeccccccccc-------c
Q psy8712 88 TWILSVWDRDTAMAITPEGLRCQSR-EQKEWHGCRANKGVYGRGKYYYEATVTDE---GLCRVGWSTSQAVR-------D 156 (651)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~-------~ 156 (651)
.+.|+..+....+.+++|+...... ....|...+++.|++ +|+|||||+|.+. +.+++||++....+ .
T Consensus 43 ~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~-sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~~ 121 (217)
T 3emw_A 43 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYS-RGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAAL 121 (217)
T ss_dssp HTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBS-SSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCCC
T ss_pred ceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCcc-CccEEEEEEEcccCCCCceeEEEEcCccccccCCcccc
Confidence 4566777777777777776644322 123477889999987 7999999999875 58999999988763 4
Q ss_pred CCCCCCCCCcC-CCCccCCCcc---cCccC-----cccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCc
Q psy8712 157 LGTDRFGFGFG-GTGKKSNNKQ---FDNYG-----EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFY 227 (651)
Q Consensus 157 ~g~~~~~~~~g-g~~~ks~~~~---~~~~g-----~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~ 227 (651)
+|.+..||+|. +.|++.|+.. +..|+ +.|..+|+|||+||.+.|+|+|.+||+.+|.||.- +..+++|
T Consensus 122 lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~---~~~~~Ly 198 (217)
T 3emw_A 122 LGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRG---LKGRTLY 198 (217)
T ss_dssp TTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECC---CTTCCBE
T ss_pred ccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEEC---CCCCEEE
Confidence 89999999987 5777777764 34786 46899999999999999999999999999999985 3467999
Q ss_pred chhhccc--ccccccc
Q psy8712 228 PAVVLKN--AEMSFNF 241 (651)
Q Consensus 228 p~~~~k~--~~~~~~f 241 (651)
|++.+.. +++++.|
T Consensus 199 P~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 199 PAVSAVWGQCQVRIRY 214 (217)
T ss_dssp EEEEECSTTCEEEEEE
T ss_pred EEEEeccCCcEEEEEe
Confidence 9998864 5655554
No 84
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=135.87 Aligned_cols=137 Identities=23% Similarity=0.362 Sum_probs=98.8
Q ss_pred HHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHhh
Q psy8712 382 IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLRS 459 (651)
Q Consensus 382 i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~ 459 (651)
+..+++..+ ..++|.|..|.. .+..+...+.... +....+. .+..++......++
T Consensus 25 L~~ll~~~~-------~~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 25 LCNIYGSIT-------IGQAIIFCQTRR--NAKWLTVEMIQDG--------------HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp HHHHHTTSC-------CSEEEEECSCHH--HHHHHHHHHHTTT--------------CCEEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCC-------CCCEEEEECCHH--HHHHHHHHHHHcC--------------CcEEEEeCCCCHHHHHHHHHHHH
Confidence 455555543 258999999874 5666666654321 1111111 12233334444455
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCCcccccccccccccc
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATR 533 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~ 533 (651)
.....++.+|+.+.+|+|+|++++|||||+| .+..+|+||+||+||.|+.|.+++|+++
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~--------------- 146 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV--------------- 146 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG---------------
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc---------------
Confidence 5678899999999999999999999999999 9999999999999999999999999987
Q ss_pred CCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 534 GRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 534 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
++...++.|++.++..+.+++..
T Consensus 147 -----------------------------------~~~~~~~~i~~~~~~~~~~~~~~ 169 (175)
T 2rb4_A 147 -----------------------------------DELPSLMKIQDHFNSSIKQLNAE 169 (175)
T ss_dssp -----------------------------------GGHHHHHHHHHHHTCCCEEECSS
T ss_pred -----------------------------------chHHHHHHHHHHhcCcccccCCc
Confidence 56788999999999998877643
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.53 E-value=9.1e-15 Score=142.35 Aligned_cols=57 Identities=35% Similarity=0.680 Sum_probs=50.7
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
...++.+|+.+.+|+|+|++++|||||+|.++++|+||+||+||.|+.|.+++|+++
T Consensus 104 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 104 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp SCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred CCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 456677889999999999999999999999999999999999999999999999987
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.53 E-value=3.2e-14 Score=134.66 Aligned_cols=125 Identities=31% Similarity=0.378 Sum_probs=96.0
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
.++|.|+.|.. .+..+.+.+.... +....++- +..++......+......++.+|+.+.+|+
T Consensus 36 ~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gl 99 (163)
T 2hjv_A 36 DSCIIFCRTKE--HVNQLTDELDDLG--------------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGI 99 (163)
T ss_dssp SSEEEECSSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTC
T ss_pred CcEEEEECCHH--HHHHHHHHHHHcC--------------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 47899988864 5666666554321 11111111 122333344445556788999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
|+|++++|||||+|.++.+|+||+||+||.|+.|.+++|+++
T Consensus 100 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-------------------------------------- 141 (163)
T 2hjv_A 100 DIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA-------------------------------------- 141 (163)
T ss_dssp CCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECG--------------------------------------
T ss_pred chhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecH--------------------------------------
Confidence 999999999999999999999999999999999999999987
Q ss_pred cccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
.|...+++|++.++.+++.++
T Consensus 142 ------------~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 142 ------------FEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp ------------GGHHHHHHHHHHHTSCCEECC
T ss_pred ------------HHHHHHHHHHHHHCCCcCccC
Confidence 578889999999999887654
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.53 E-value=1.3e-14 Score=163.90 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=64.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---------------------------------HHHH-
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---------------------------------KDQM- 331 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---------------------------------~~q~- 331 (651)
+++|++||++|+.|+.+.+..+.+..+ +++.++.|..+. ....
T Consensus 49 ~v~i~~pt~~l~~q~~~~~~~l~~~~~---~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~ 125 (551)
T 3crv_A 49 KVLFVVRTHNEFYPIYRDLTKIREKRN---ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVK 125 (551)
T ss_dssp EEEEEESSGGGHHHHHHHHTTCCCSSC---CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhhhcC---ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHH
Confidence 799999999999999999988876654 788777764321 1111
Q ss_pred -----------------HHhccCCcEEEECchhhHHHHhCCCccc-CCcceEeeccchhhhh
Q psy8712 332 -----------------SVLSSGVDIVVGTPGRMEDLISGGHLSL-THCRFFVLDEADGLLK 375 (651)
Q Consensus 332 -----------------~~L~~~~dIlV~TP~rL~~ll~~~~l~l-~~l~~lViDEaD~ll~ 375 (651)
+.+...+||||+|+..|.+...+..+.+ ....++||||||.|.+
T Consensus 126 ~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 126 KLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 2233578999999999988654443433 4678999999999987
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.53 E-value=7.3e-14 Score=132.34 Aligned_cols=140 Identities=24% Similarity=0.385 Sum_probs=99.8
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLR 458 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~ 458 (651)
.+..+++..+. .++|.|..|.. .+..+...+.... +.-..+. .+..++......+
T Consensus 20 ~l~~ll~~~~~-------~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 20 CLTDLYDSISV-------TQAVIFCNTRR--KVEELTTKLRNDK--------------FTVSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp HHHHHHHHTTC-------SCEEEEESSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CCEEEEECCHH--HHHHHHHHHHHcC--------------CCEEEEECCCCHHHHHHHHHHH
Confidence 35556665543 58899988864 5666666654321 1111111 1222333344445
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCS 538 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~ 538 (651)
+.....++.+|+.+.+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++
T Consensus 77 ~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~-------------------- 136 (165)
T 1fuk_A 77 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-------------------- 136 (165)
T ss_dssp HTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET--------------------
T ss_pred HcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcc--------------------
Confidence 566778999999999999999999999999999999999999999999999999999997
Q ss_pred CcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 539 NTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 539 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+|...++.+++.++.+++.++.++.
T Consensus 137 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 137 ------------------------------EDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp ------------------------------TTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred ------------------------------hHHHHHHHHHHHHccCccccCccHH
Confidence 5677888999999999988876543
No 89
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=3e-14 Score=136.22 Aligned_cols=141 Identities=19% Similarity=0.361 Sum_probs=103.4
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLR 458 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~ 458 (651)
.+..+++..+. .++|.|+.|.. .+..+...+.... +....++ .+..++......+
T Consensus 21 ~L~~ll~~~~~-------~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~hg~~~~~~r~~~~~~f 77 (172)
T 1t5i_A 21 KLFDLLDVLEF-------NQVVIFVKSVQ--RCIALAQLLVEQN--------------FPAIAIHRGMPQEERLSRYQQF 77 (172)
T ss_dssp HHHHHHHHSCC-------SSEEEECSSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CcEEEEECCHH--HHHHHHHHHHhcC--------------CCEEEEECCCCHHHHHHHHHHH
Confidence 35556665543 58899998864 5666666654321 1111111 1223333444445
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCS 538 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~ 538 (651)
......++.+|+.+.+|+|+|++++|||||+|.++.+|+||+||+||.|+.|.+++|+++.
T Consensus 78 ~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~------------------- 138 (172)
T 1t5i_A 78 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE------------------- 138 (172)
T ss_dssp HTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH-------------------
T ss_pred HCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh-------------------
Confidence 5667889999999999999999999999999999999999999999999999999999872
Q ss_pred CcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 539 NTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 539 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
++...++.|++.++.++.+++..+.
T Consensus 139 ------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 139 ------------------------------NDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp ------------------------------HHHHHHHHHHHHHCCCEEECC----
T ss_pred ------------------------------hHHHHHHHHHHHHhcchhhCChhhc
Confidence 4678899999999999998876543
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.51 E-value=1.6e-14 Score=166.32 Aligned_cols=186 Identities=17% Similarity=0.142 Sum_probs=114.0
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc--cchHHHH----HHHh---cCC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ--GYGNLID----RMHK---QIP 390 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~--gf~~~i~----~il~---~lp 390 (651)
.+.|+.++..+...+..+ +||++|++++... .+|||||+|++++. ++..... .+.. .+|
T Consensus 296 ~~~Gie~y~~~~~~~~~g-----~tp~~LlDyl~~~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp 363 (664)
T 1c4o_A 296 TCPGVENYARYFTGKAPG-----EPPYTLLDYFPED-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLP 363 (664)
T ss_dssp CCTTGGGGHHHHHTCCTT-----SCCCCGGGGSCTT-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred ccCchHHHHHHHhcccCC-----CCchHHHHHHhhc-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccch
Confidence 345666676666655555 8999999987543 38999999998752 1111111 1111 111
Q ss_pred Ccc---C------CCCceeEEEEeeccChHHHHHHHHHh---------ccCCeEEEccCCCCc-----------cCceEE
Q psy8712 391 KIT---S------DGKRLQMIVCSATLHDFDVKKMAERL---------MYFPTWVDLKGEDAV-----------PETVHH 441 (651)
Q Consensus 391 ~~~---~------~~~~~Q~l~~SATl~~~~v~~l~~~~---------l~~p~~i~~~~~~~~-----------~~~i~~ 441 (651)
... + .....|++++|||+++ ........+ +.+|. +.+...... ...-.+
T Consensus 364 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~~~r~~~l~~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~ 441 (664)
T 1c4o_A 364 SALDNRPLRFEEFLERVSQVVFVSATPGP-FELAHSGRVVEQIIRPTGLLDPL-VRVKPTENQILDLMEGIRERAARGER 441 (664)
T ss_dssp GGGGSSCCCHHHHHHTCSEEEEEESSCCH-HHHHHCSEEEEECSCTTCCCCCE-EEEECSTTHHHHHHHHHHHHHHTTCE
T ss_pred hhhhcCcccHHHHHhhcCCEEEEecCCCH-HHHHhhhCeeeeeeccCCCCCCe-EEEecccchHHHHHHHHHHHHhcCCE
Confidence 100 0 0014799999999985 222211111 11222 112111100 001135
Q ss_pred EEEEeCcchHHH--HHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCC-----
Q psy8712 442 VVVKIDPQQDET--WGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTL----- 489 (651)
Q Consensus 442 ~~~~~~~~~~~~--~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl----- 489 (651)
++++|++..... ...+ ++.....++++|+.+.+|+|+|+|++||++|.
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCC
Confidence 677777654221 1111 22235667889999999999999999999998
Q ss_pred CCChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 490 PDDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 490 P~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
|.+..+|+||+|||||.+ .|.+++++++.+
T Consensus 522 p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp GGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred CCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 999999999999999995 899999998743
No 91
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.50 E-value=6.8e-14 Score=138.37 Aligned_cols=126 Identities=23% Similarity=0.316 Sum_probs=94.4
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
.++|.|..|.. .+..+...+.... +....++- +..++......++.....++.+|+.+.+||
T Consensus 32 ~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 95 (212)
T 3eaq_A 32 DRAMVFTRTKA--ETEEIAQGLLRLG--------------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGL 95 (212)
T ss_dssp SCEEEECSSHH--HHHHHHHHHHHHT--------------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSS
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHcC--------------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCC
Confidence 48889988864 5666666553321 11112222 223334444445566788999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
|+|++++|||||+|.+..+|+||+||+||.|+.|.|++|+++
T Consensus 96 di~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-------------------------------------- 137 (212)
T 3eaq_A 96 DIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-------------------------------------- 137 (212)
T ss_dssp SCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG--------------------------------------
T ss_pred CCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch--------------------------------------
Confidence 999999999999999999999999999999999999999988
Q ss_pred cccccCCcccchhHHHHHHHHHHHhcCccccccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDD 590 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~ 590 (651)
+|...++.|++.++..+..++.
T Consensus 138 ------------~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 138 ------------RERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp ------------GGHHHHHHHHHHHSSCCEECCC
T ss_pred ------------hHHHHHHHHHHHhcCcCeecCC
Confidence 5778888999999988876653
No 92
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.49 E-value=1.3e-14 Score=144.98 Aligned_cols=150 Identities=24% Similarity=0.360 Sum_probs=115.4
Q ss_pred eeeeccccccccccCCCCcccccc-cccccccccccccccCCceeEEEEEecc---CCceeecccccccc-------ccC
Q psy8712 89 WILSVWDRDTAMAITPEGLRCQSR-EQKEWHGCRANKGVYGRGKYYYEATVTD---EGLCRVGWSTSQAV-------RDL 157 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~-------~~~ 157 (651)
+.|+.++....+.+++|+...... ....|...+++.|++ +|||||||+|.+ .+-+++||++.... ..+
T Consensus 41 ~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~-sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~~~ 119 (226)
T 2afj_A 41 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYS-RGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALL 119 (226)
T ss_dssp HSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCC-CSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSCCC
T ss_pred cEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCcc-CCEEEEEEEEeccCCCCCEEEEecCCccccccccccccc
Confidence 456666677777777776532110 112355788888887 799999999998 67899999998774 227
Q ss_pred CCCCCCCCcC-CCCccCCCcc---cCcc-----CcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcc
Q psy8712 158 GTDRFGFGFG-GTGKKSNNKQ---FDNY-----GEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYP 228 (651)
Q Consensus 158 g~~~~~~~~g-g~~~ks~~~~---~~~~-----g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p 228 (651)
|.+..+|+|+ +.|+..|+.. +..| +..|..+|+|||+||.+.|+|+|.+||+.+|.+|.. +..+++||
T Consensus 120 G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~---~~~~~L~P 196 (226)
T 2afj_A 120 GSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRG---LKGRTLYP 196 (226)
T ss_dssp CCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHH---HHHHCCEE
T ss_pred cCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEc---CCCCEEEE
Confidence 9999999998 4777777766 3456 456899999999999999999999999999999875 44689999
Q ss_pred hhhcc--ccccccccC
Q psy8712 229 AVVLK--NAEMSFNFG 242 (651)
Q Consensus 229 ~~~~k--~~~~~~~f~ 242 (651)
++++. ++++.++|-
T Consensus 197 ~f~l~~g~~~v~l~~~ 212 (226)
T 2afj_A 197 SVSAVWGQCQVRIRYM 212 (226)
T ss_dssp EEEECCTTSCCEEEEE
T ss_pred EEEcccCCCEEEEEEc
Confidence 99874 456666653
No 93
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=132.99 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=75.2
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHHhhc
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSH 460 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 460 (651)
.+..++..... ..++|.|+.|.. .+..+...+..... .+..+.-..+..++......+..
T Consensus 35 ~L~~ll~~~~~------~~k~lVF~~~~~--~~~~l~~~L~~~g~------------~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 35 FLLDLLNATGK------DSLTLVFVETKK--GADSLEDFLYHEGY------------ACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp HHHHHHHHC-C------CSCEEEEESCHH--HHHHHHHHHHHTTC------------CEEEEC--------CHHHHHHHH
T ss_pred HHHHHHHhcCC------CCeEEEEECCHH--HHHHHHHHHHHcCC------------ceEEEeCCCCHHHHHHHHHHHHc
Confidence 35555555432 468999999874 56666665533210 01100011122222233333445
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
....++.+|+.+.+|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 152 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 152 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch
Confidence 5677999999999999999999999999999999999999999999999999999987
No 94
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.45 E-value=2.7e-13 Score=141.12 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=92.1
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
.++|.|..|.. .+..+...+.... +....++ .+..++......++.....++++|+.+.+||
T Consensus 29 ~~~LVF~~t~~--~~~~l~~~L~~~g--------------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 29 DRAMVFTRTKA--ETEEIAQGLLRLG--------------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSEEEECSSHH--HHHHHHHHHHTTT--------------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred CCEEEEECCHH--HHHHHHHHHHhCC--------------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 48899988864 6667776654321 1112222 2233344444445556788999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
|+|++++|||||+|.+.++|+||+||+||.|+.|.|++|+++
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~-------------------------------------- 134 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-------------------------------------- 134 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECS--------------------------------------
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeCh--------------------------------------
Confidence 999999999999999999999999999999999999999998
Q ss_pred cccccCCcccchhHHHHHHHHHHHhcCccccccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDD 590 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~ 590 (651)
+|...++.|++.++..+..++.
T Consensus 135 ------------~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 135 ------------RERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp ------------STHHHHHHHHHHHTCCCEECCC
T ss_pred ------------HHHHHHHHHHHHhCCcceEeCC
Confidence 5677888899999888776653
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.38 E-value=1.7e-13 Score=154.22 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=33.2
Q ss_pred HcCCCCCcHHHHhhHHh----HhcCCceEeeecCCCCccceeehhhHH
Q psy8712 19 EMDWLLPTDVQAEAIPL----ILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~----il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
-+|| .|+|+|.+++.. +..|+|+++.||||||||+||++|+++
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~ 49 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ 49 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 3577 899999998654 568999999999999999999999864
No 96
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.98 E-value=1.7e-13 Score=130.51 Aligned_cols=61 Identities=39% Similarity=0.601 Sum_probs=56.8
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+......++.+|+.+.+|+|+|++++|||||+|.+..+|+||+||+||.|+.|.+++|+.+
T Consensus 76 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~ 136 (170)
T 2yjt_D 76 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 136 (170)
Confidence 3445677899999999999999999999999999999999999999999999999999987
No 97
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.09 E-value=5.5e-11 Score=135.70 Aligned_cols=43 Identities=30% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCcHHHHhhHH----hHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAEAIP----LILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~aip----~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|.|.|.+.+. .+..|+|+++.||||||||+||++|+++.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~ 49 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE 49 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 58999999875 45689999999999999999999999987644
No 98
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.73 E-value=5.9e-09 Score=118.81 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=34.4
Q ss_pred cHHHHhhHHhHhcCCceEeeecCCCCcc--ceeehhhHH
Q psy8712 26 TDVQAEAIPLILGGGDVLMAAETGSGKT--GAFCLPIIQ 62 (651)
Q Consensus 26 t~iQ~~aip~il~g~dvl~~a~TGsGKT--~af~lp~l~ 62 (651)
++.|.+||+.++.++++++.+++||||| .+++++.++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999 778888776
No 99
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.17 E-value=1e-06 Score=90.10 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHhhccccc-eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceE--EEEeeeC
Q psy8712 453 TWGRLRSHIQTD-GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL--AISLVST 518 (651)
Q Consensus 453 ~~~~l~~~~~~~-~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~--ai~lv~~ 518 (651)
....+..+.... .+.+++...+|||++++++||+||+|.++..|+||+||++|.|+.+. ++.|++.
T Consensus 155 ~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 155 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred HHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 334444442443 68899999999999999999999999999999999999999998765 4667765
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.0038 Score=70.27 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
.+++.|.+|+..++.++-+++.++.|||||..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH
Confidence 46899999999999999999999999999943
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.78 E-value=0.0044 Score=70.55 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=29.2
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
..+++-|.+|+..++.+.-+++.||+|||||..
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~ 211 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT 211 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH
Confidence 356899999999999888899999999999954
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.72 E-value=0.0038 Score=68.24 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHcCCCCCcHHHHhhHHhHhcC-----CceEeeecCCCCccc
Q psy8712 17 VEEMDWLLPTDVQAEAIPLILGG-----GDVLMAAETGSGKTG 54 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~il~g-----~dvl~~a~TGsGKT~ 54 (651)
..-+.|..+++-|.+|+..++.. +.+++.|+.|||||.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ 60 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT 60 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH
Confidence 34578889999999999987643 489999999999993
No 103
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.71 E-value=0.0017 Score=74.16 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCcHHHHhhHHhHhcCCc-eEeeecCCCCccce
Q psy8712 24 LPTDVQAEAIPLILGGGD-VLMAAETGSGKTGA 55 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a 55 (651)
.+.+-|.+||-.+|..+| .|+++|.|||||-+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t 221 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT 221 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH
Confidence 457899999999998776 58899999999965
No 104
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.013 Score=68.61 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
..+++-|.+|+..++.+.-+++.||.|||||..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~ 391 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT 391 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 346799999999999887789999999999954
No 105
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.46 E-value=0.0082 Score=70.14 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
.+++-|.+|+..++.++-+++.||+|||||..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t 387 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT 387 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH
Confidence 46899999999999888889999999999964
No 106
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=94.78 E-value=0.039 Score=52.72 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=53.3
Q ss_pred ccccccccccccCCceeEEEEEeccCCceeecccccccc----ccCCCCCCCCCcCCCC---ccCCCcccCccCcccCCC
Q psy8712 116 EWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAV----RDLGTDRFGFGFGGTG---KKSNNKQFDNYGEAFGMH 188 (651)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~gg~~---~ks~~~~~~~~g~~~~~~ 188 (651)
.|...-+..|.+ +||+|+||.|.+.+-..+|-+..... ..+|.++.+|..+-.. ...++..-.-.- -...
T Consensus 49 ~~~~VLg~~~fs-SGrHYWEVev~~~~~w~vGV~~~si~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~--~~~~ 125 (188)
T 2vok_A 49 NYPMVLGAQRFS-SGKMYWEVDVTQKEAWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHI--QVPP 125 (188)
T ss_dssp SSSEEEBSCCBS-SSEEEEEEECTTCSCEEEEEEETTCCCSSCCCCSTTTTEEEEEEETTEEEECSSSCEEECC--SSCC
T ss_pred eeccccccCccc-CCCeEEEEEecCCceEEEEEeeCCcCCCCccccCCCCCEEEEEEECCEEEEEeCCccCEec--CCCC
Confidence 355556666666 79999999999887777776654322 2355555555443211 111111100000 1235
Q ss_pred cccccccccCCceeeeec
Q psy8712 189 DVIGCLLDLDNMTVAFTK 206 (651)
Q Consensus 189 d~ig~~~~~~~~~~~~~~ 206 (651)
..||.+||.+.|+|+|--
T Consensus 126 ~rVGVfLDye~G~lSFY~ 143 (188)
T 2vok_A 126 CQIGIFVDYEAGVVSFYN 143 (188)
T ss_dssp SEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEcCCCEEEEEE
Confidence 789999999999999974
No 107
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=93.99 E-value=0.048 Score=51.97 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=60.1
Q ss_pred ccccccccccCCceeEEEEEeccCCceeeccccccc---------cccCCCCCCCCCcC-CCCccC---CCccc-CccCc
Q psy8712 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQA---------VRDLGTDRFGFGFG-GTGKKS---NNKQF-DNYGE 183 (651)
Q Consensus 118 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~g-g~~~ks---~~~~~-~~~g~ 183 (651)
...-+..|++ +||+|+||.|.+.+-..+|=+.... ...+|.++.+|..+ ..|+.. |+... ...+.
T Consensus 39 ~~VLG~~~ft-sGrHYWEVeV~~~~~W~vGV~~~~~~r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~ 117 (186)
T 3uv9_A 39 TGVLGSQSIT-SGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAP 117 (186)
T ss_dssp SCEECSSCBC-SSEEEEEEECTTCSCEEEEEESCSTTTTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSC
T ss_pred CcCcCCCCCC-CCCEEEEEEEcCCCcEEEEEEEEEecccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCC
Confidence 3455555665 7999999999998887887654322 22355555555433 111110 01000 00110
Q ss_pred ------ccCCCcccccccccCCceeeee---ccCcccccccccchhhhhccCcchhhc
Q psy8712 184 ------AFGMHDVIGCLLDLDNMTVAFT---KNGQHLGLAFNISQQLKNSAFYPAVVL 232 (651)
Q Consensus 184 ------~~~~~d~ig~~~~~~~~~~~~~---~ng~~~g~af~~~~~~~~~~~~p~~~~ 232 (651)
.-...+.||.+||.+.|+|+|- ..+.+ =+.|.- .+. .+++||+.++
T Consensus 118 ~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~l-I~tF~~-~~F-s~pL~P~F~~ 172 (186)
T 3uv9_A 118 FIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFL-IYKFSQ-CSF-SKPVFPYLNP 172 (186)
T ss_dssp EEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEE-EEEECS-CCC-SSCBEEEEEC
T ss_pred ccCcccccccCCEEEEEeecCCCEEEEEeCCCCceE-EEEeCC-cCC-CCCEEeEEEC
Confidence 1123468999999999999994 22432 122210 000 2567877764
No 108
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=93.80 E-value=0.082 Score=50.55 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=51.0
Q ss_pred cccccccccccCCceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCCC-Ccc---CCCcccCccCcccCCC
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGGT-GKK---SNNKQFDNYGEAFGMH 188 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg~-~~k---s~~~~~~~~g~~~~~~ 188 (651)
|...-+..+++ +||+|+||.|.+.+-..+|-+...... .+|.+..+|..+=. +.. .++....-.. -...
T Consensus 54 ~~~VLg~~~fs-sGrHYWEVev~~~~~w~vGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~~--~~~~ 130 (191)
T 2wl1_A 54 CIIVLGSPSFL-SGRRYWEVEVGDKTAWILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLLI--KEPP 130 (191)
T ss_dssp SCCEEEECCBC-SSEEEEEEECTTCSCEEEEEEETTCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEECCC--SSCC
T ss_pred cccccCccccc-CCCEEEEEEeCCCCEEEEEEeeCCcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccCcc--ccCC
Confidence 44455556665 799999999999877777766543322 24444444433210 111 1111100010 1235
Q ss_pred cccccccccCCceeeeec
Q psy8712 189 DVIGCLLDLDNMTVAFTK 206 (651)
Q Consensus 189 d~ig~~~~~~~~~~~~~~ 206 (651)
..||.+||.+.|+|+|--
T Consensus 131 ~rVGVfLDye~G~lSFY~ 148 (191)
T 2wl1_A 131 KRVGIFVDYRVGSISFYN 148 (191)
T ss_dssp SEEEEEEETTTTEEEEEE
T ss_pred cEEEEEEEcCCCEEEEEE
Confidence 789999999999999973
No 109
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.72 E-value=0.34 Score=51.42 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhh
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~ 60 (651)
.|+|.|.+.+..+-..+-+++..+-+.|||.+.+.-+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~ 199 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFL 199 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHH
Confidence 6799999988877555678999999999997654433
No 110
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=92.95 E-value=0.14 Score=49.35 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=50.3
Q ss_pred cccccccccccCCceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCCC-CccC---CCcccCccCcccCCC
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGGT-GKKS---NNKQFDNYGEAFGMH 188 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg~-~~ks---~~~~~~~~g~~~~~~ 188 (651)
|...-+..+.+ +||+|+||.|.+.+-..+|-+...... .++.+..+|..+=. +... ++..-.-.. -...
T Consensus 51 ~~~VLg~~~fs-SGrHYWEVev~~~~~w~vGV~~~si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~~--~~~~ 127 (201)
T 2fbe_A 51 ALCVLGTPRFT-SGRHYWEVDVGTSQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWV--SPQL 127 (201)
T ss_dssp SCEEEESCCBS-SSEEEEEEECTTCSEEEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEECC--CTTC
T ss_pred ccceecCcccc-CCceEEEEEeCCCCEEEEEEeeCccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCcc--CCCC
Confidence 55555666666 799999999998877777766543322 23444444433211 1100 000000000 1235
Q ss_pred cccccccccCCceeeeec
Q psy8712 189 DVIGCLLDLDNMTVAFTK 206 (651)
Q Consensus 189 d~ig~~~~~~~~~~~~~~ 206 (651)
..||.+||.+.|+|+|--
T Consensus 128 ~rVGVfLDye~G~lSFY~ 145 (201)
T 2fbe_A 128 HRVGIFLDVGMRSIAFYN 145 (201)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEcCCCEEEEEe
Confidence 789999999999999964
No 111
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=92.82 E-value=0.18 Score=48.24 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=48.2
Q ss_pred cccccccccccCCceeEEEEEeccCCceeecccccccc----ccCCCCCCCCCcCCCCccCCCcccCccCcc--c----C
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAV----RDLGTDRFGFGFGGTGKKSNNKQFDNYGEA--F----G 186 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~gg~~~ks~~~~~~~~g~~--~----~ 186 (651)
|...-+..+.+ +||+|+||.|.+.+-..+|-+..... ..++..+.+|..+=.....+ ..+.+--++ . .
T Consensus 54 ~~~VLg~~~fs-sGrhYWEVev~~~~~W~lGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y-~~~~~~~~~~~l~~~~~ 131 (193)
T 3kb5_A 54 AVAVVAHQQLS-EGEHYWEVDVGDKPRWALGVIAAEAPRRGRLHAVPSQGLWLLGLREGKIL-EAHVEAKEPRALRSPER 131 (193)
T ss_dssp SCEEEBSCCBC-SSEEEEEEECTTCSSEEEEEEETTSCCSSSCCCSGGGTEEEEEEETTTEE-EECCSSSSCEECCCCSS
T ss_pred ccEEccCCccc-CCCEEEEEEeCcCceEEEEEeeCCcCcCCCcCCCCCCCEEEEEEeCCCEE-EEEeCCCccEEEeecCC
Confidence 44455566665 79999999999987666666553322 22333333443221100000 001110111 1 2
Q ss_pred CCcccccccccCCceeeee
Q psy8712 187 MHDVIGCLLDLDNMTVAFT 205 (651)
Q Consensus 187 ~~d~ig~~~~~~~~~~~~~ 205 (651)
.-..||.+||.+.|+|+|-
T Consensus 132 ~~~rVGVfLDye~G~lSFY 150 (193)
T 3kb5_A 132 RPTRIGLYLSFGDGVLSFY 150 (193)
T ss_dssp CCSEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEEcCCCEEEEE
Confidence 2467999999999999985
No 112
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.33 E-value=0.22 Score=56.39 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
..+++-|.+||.. ..+.++|.|+.|||||.+-
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHH
Confidence 4689999999973 4678999999999999543
No 113
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.21 E-value=0.88 Score=51.08 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceeeh
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCL 58 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~l 58 (651)
.|+|.|...+..+-..+-+++..+-|+|||.+.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~ 197 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAI 197 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHH
Confidence 47999999988775667899999999999976543
No 114
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.69 E-value=3.2 Score=37.65 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+.+.+...+ +.+..+.|+.+..+....+. ...+|+|+|. +-...+++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG-------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCch
Confidence 4579999999999999999887763 78889999987665554442 3579999993 23345677
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
.+++++|.-+
T Consensus 102 ~~~~~Vi~~~ 111 (163)
T 2hjv_A 102 ENISLVINYD 111 (163)
T ss_dssp SCCSEEEESS
T ss_pred hcCCEEEEeC
Confidence 8888888644
No 115
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.68 E-value=0.19 Score=54.23 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=33.3
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHH
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQII 305 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~ 305 (651)
+-.++.+..|+|||......+.. ...+|++||++++..+.+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~----------~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF----------EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT----------TTCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc----------CCeEEEeCCHHHHHHHHHHhh
Confidence 34578999999999987654310 246999999999988877764
No 116
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.95 E-value=2.7 Score=38.64 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++++..+..+.+.+...+ +.+..+.|+.+..+....+. ...+|+|+|. +-...+++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDG-------HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTT-------CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCc
Confidence 4589999999999999998887653 78889999988766554442 3579999994 23445678
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
..+.++|.-
T Consensus 101 ~~~~~Vi~~ 109 (175)
T 2rb4_A 101 KQVTIVVNF 109 (175)
T ss_dssp TTEEEEEES
T ss_pred ccCCEEEEe
Confidence 888888853
No 117
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.62 E-value=1.3 Score=40.56 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++|++-+..+.+.++..+ +.+..+.|+.+..+....+. ...+|+|+|. .....++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCC
Confidence 34589999999999999998887653 77888999988665554442 3579999993 2334567
Q ss_pred cCCcceEeecc
Q psy8712 359 LTHCRFFVLDE 369 (651)
Q Consensus 359 l~~l~~lViDE 369 (651)
+.+++++|.-+
T Consensus 96 ~~~~~~Vi~~~ 106 (165)
T 1fuk_A 96 VQQVSLVINYD 106 (165)
T ss_dssp CCSCSEEEESS
T ss_pred cccCCEEEEeC
Confidence 78888887644
No 118
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.59 E-value=1.2 Score=42.14 Aligned_cols=73 Identities=14% Similarity=0.276 Sum_probs=54.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
++++||.+++++-+..+.+.++..+ +++..+.|+.+..+....+. ...+|+|+|. .+. ..+++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCc
Confidence 4579999999999999999987763 78888999987766554442 3589999993 333 34577
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
.+++++|.-+
T Consensus 121 ~~v~~VI~~d 130 (191)
T 2p6n_A 121 PAIQHVINYD 130 (191)
T ss_dssp CCCSEEEESS
T ss_pred ccCCEEEEeC
Confidence 8888887643
No 119
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=89.50 E-value=0.42 Score=55.15 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=27.1
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
..++|-|.+||-. ..+.++|.|..|||||.+-
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH
Confidence 4689999999976 3678999999999999553
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.15 E-value=1 Score=46.38 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=18.7
Q ss_pred CCCCCCCeEEEecCCCCceeeee
Q psy8712 247 KHEPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 247 ~~~~~~~~i~~~~~gsGKT~~~~ 269 (651)
....+.+.+..+..|+|||.++-
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHH
Confidence 34577889999999999998644
No 121
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.25 E-value=1.6 Score=41.80 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=54.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|++-+..+.+.+...+ +.+..++|+.+..++...+. ...+|+|+|. +-...+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT-------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCC
Confidence 4589999999999999999887764 78889999988766655442 3578999993 33455677
Q ss_pred CCcceEee
Q psy8712 360 THCRFFVL 367 (651)
Q Consensus 360 ~~l~~lVi 367 (651)
.+++++|.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 88888874
No 122
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=87.66 E-value=0.48 Score=54.05 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=26.3
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+||-|.+||... ++.++|.|..|||||.+-
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHH
Confidence 4799999999763 788999999999999644
No 123
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.29 E-value=1.5 Score=40.41 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+.+.+...+ +.+..+.|+.+..+....+. ...+|+|+|. +....+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQN-------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcch
Confidence 4579999999999999999887753 78888999987766554442 3579999994 23345667
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
..++++|.-+
T Consensus 98 ~~~~~Vi~~d 107 (172)
T 1t5i_A 98 ERVNIAFNYD 107 (172)
T ss_dssp GGCSEEEESS
T ss_pred hhCCEEEEEC
Confidence 7888888644
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.11 E-value=0.73 Score=45.89 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=18.5
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.+++.+++..+..|+|||.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHH
Confidence 35667899999999999997543
No 125
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.90 E-value=4.1 Score=37.99 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++++.-+..+.+.++..+ +.+..+.|+.+..++...+ + ...+|||+|. +-...++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gld 111 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLD 111 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-------CCEEEEC--------CHHHHHHHHTSSSEEEEEC------------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC------hhhcCCC
Confidence 35689999999999999999887653 7888888887654443333 2 3579999993 2233456
Q ss_pred cCCcceEeec
Q psy8712 359 LTHCRFFVLD 368 (651)
Q Consensus 359 l~~l~~lViD 368 (651)
+.++.++|.-
T Consensus 112 i~~~~~VI~~ 121 (185)
T 2jgn_A 112 ISNVKHVINF 121 (185)
T ss_dssp CCSBSEEEES
T ss_pred cccCCEEEEe
Confidence 7788888763
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.62 E-value=0.66 Score=44.58 Aligned_cols=19 Identities=0% Similarity=-0.251 Sum_probs=16.1
Q ss_pred CCCCeEEEecCCCCceeee
Q psy8712 250 PPKDYIAVCNAPKQNVKHS 268 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~ 268 (651)
.+..++..+..|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999963
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.67 E-value=2.5 Score=42.55 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=17.3
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.++.+++..+..|+|||.++-
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 456679999999999999653
No 128
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.66 E-value=10 Score=38.99 Aligned_cols=93 Identities=26% Similarity=0.509 Sum_probs=81.8
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQG 78 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~ 78 (651)
+.+|+++|++++++++|.++||..|+|+|.++|+.++.| +|++++||||||||++|++|+++.+.. ...
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------~~~ 74 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---------EDA 74 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------TCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---------CCC
Confidence 468999999999999999999999999999999999998 999999999999999999999986532 112
Q ss_pred CCccccccCceeeecccccccccc
Q psy8712 79 KAKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 79 ~~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
..++++++|+++|..|..+....+
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHHH
Confidence 457899999999998888766554
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.46 E-value=0.81 Score=41.46 Aligned_cols=57 Identities=9% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHH---HHHHHHhcc
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV---KKMAERLMY 422 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v---~~l~~~~l~ 422 (651)
.+.++|||||.+.+.... ...+..+++.+... ...++++|...++..+ .++..++..
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~-----g~~~iiits~~~p~~l~~~~~L~SRl~~ 141 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNS-----GKGFLLLGSEYTPQQLVIREDLRTRMAY 141 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHH-----TCCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHc-----CCcEEEEECCCCHHHccccHHHHHHHhc
Confidence 457899999999854432 44455555544321 2343455555443233 566666643
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.07 E-value=5.7 Score=36.95 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.+-.+|||||+|.+... ....+..++...+. +..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~------~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSK------SCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTT------TEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCC------CCeEEEEeC
Confidence 45679999999988542 23445555555443 455555543
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.19 E-value=2.6 Score=43.50 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=18.9
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
...+.+++..+..|+|||..+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHH
Confidence 45677899999999999997543
No 132
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=81.50 E-value=1.2 Score=50.59 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCcHHHHhhHHhHhc--CCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILG--GGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~--g~dvl~~a~TGsGKT~af 56 (651)
.+|.-|++|+..++. .+-.++.|.-|.|||.+-
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l 209 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA 209 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH
Confidence 568899999988875 345788899999999443
No 133
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=81.36 E-value=1.1 Score=54.99 Aligned_cols=31 Identities=48% Similarity=0.517 Sum_probs=27.0
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+|+-|.++|-.- +++++|.|.-|||||.+-
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHH
Confidence 5799999999765 889999999999999553
No 134
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=81.29 E-value=4 Score=46.38 Aligned_cols=78 Identities=10% Similarity=0.264 Sum_probs=60.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.++|+..|..+.+.++..+ +++..+.|+.+..+....+ + ...+|+|+|- +-...++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g-------i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG-------IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC-------CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcc
Confidence 45699999999999999999888764 7777888887765555443 3 3589999994 3345567
Q ss_pred cCCcceEeeccchhh
Q psy8712 359 LTHCRFFVLDEADGL 373 (651)
Q Consensus 359 l~~l~~lViDEaD~l 373 (651)
+.+++++|+-|+|..
T Consensus 511 ip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 511 IPEVSLVAILDADKE 525 (661)
T ss_dssp CTTEEEEEETTTTCC
T ss_pred cCCCCEEEEeCcccc
Confidence 889999999998754
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.76 E-value=0.92 Score=41.97 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.8
Q ss_pred cHHHHhhHHhHh---------cCCceEeeecCCCCcc
Q psy8712 26 TDVQAEAIPLIL---------GGGDVLMAAETGSGKT 53 (651)
Q Consensus 26 t~iQ~~aip~il---------~g~dvl~~a~TGsGKT 53 (651)
++-|.+++..+. .|..+++.+|+|+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKT 52 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKT 52 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHH
Confidence 456666665543 4788999999999999
No 136
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.32 E-value=15 Score=38.21 Aligned_cols=93 Identities=25% Similarity=0.451 Sum_probs=81.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.. .....+
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 107 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---------QVRETQ 107 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---------TSCSCC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh---------ccCCce
Confidence 46999999999999999999999999999999999999999999999999999999999986532 112457
Q ss_pred cccccCceeeeccccccccccC
Q psy8712 82 AQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
+++++|+++|..|..+....+.
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHHHh
Confidence 9999999999998887665553
No 137
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.29 E-value=3.8 Score=41.65 Aligned_cols=71 Identities=13% Similarity=0.282 Sum_probs=54.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|++-+..+.+.+...+ +.+..++|+.+..++...+. ...+|+|+|. +....+++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g-------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTT-------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccc
Confidence 4589999999999998888876542 78889999988766655442 3579999993 34456778
Q ss_pred CCcceEee
Q psy8712 360 THCRFFVL 367 (651)
Q Consensus 360 ~~l~~lVi 367 (651)
.+++++|.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 88888874
No 138
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=80.28 E-value=4.3 Score=42.44 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.++|++-+..+++.++..+ +.+..+.|+.+..++...+. ...+|||+|. .+ ...++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gid 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCC-------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCC
Confidence 46689999999999999999887753 78888999988766554442 3579999994 33 34567
Q ss_pred cCCcceEee
Q psy8712 359 LTHCRFFVL 367 (651)
Q Consensus 359 l~~l~~lVi 367 (651)
+.+++++|.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 788888875
No 139
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.23 E-value=2.3 Score=43.31 Aligned_cols=21 Identities=0% Similarity=-0.159 Sum_probs=16.9
Q ss_pred CCCCeEEEecCCCCceeeeec
Q psy8712 250 PPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.+..++..+..|+|||..+-.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 346789999999999997543
No 140
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.44 E-value=4.5 Score=42.07 Aligned_cols=94 Identities=26% Similarity=0.480 Sum_probs=81.7
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQG 78 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~ 78 (651)
+..|++++++|.++++|.++||..|+|+|.++||.++.| +|++++||||||||++|++|+++.+.. ...
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~~~ 94 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------ANK 94 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------TSC
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---------cCC
Confidence 357999999999999999999999999999999999987 999999999999999999999986532 122
Q ss_pred CCccccccCceeeeccccccccccC
Q psy8712 79 KAKAQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 79 ~~~~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
..++++++|+++|..|..+....+.
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHH
Confidence 3478999999999988877665553
No 141
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.24 E-value=5.8 Score=45.06 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=59.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.++|+..|..+.+.+...+ +++..+.|+.+..+....+ + ...+|+|+|- +-...++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-------i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlD 504 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-------IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLD 504 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-------CCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCcc
Confidence 45699999999999999999888764 7777888887765555443 3 3589999993 2344567
Q ss_pred cCCcceEeeccchhh
Q psy8712 359 LTHCRFFVLDEADGL 373 (651)
Q Consensus 359 l~~l~~lViDEaD~l 373 (651)
+.+++++|+=++|..
T Consensus 505 ip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 505 IPEVSLVAILDADKE 519 (664)
T ss_dssp CTTEEEEEETTTTSC
T ss_pred CCCCCEEEEeCCccc
Confidence 889999999888753
No 142
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.46 E-value=3.6 Score=44.24 Aligned_cols=19 Identities=0% Similarity=-0.190 Sum_probs=16.1
Q ss_pred CCCeEEEecCCCCceeeee
Q psy8712 251 PKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~ 269 (651)
+..++..+..|+|||..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5678999999999999754
No 143
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.19 E-value=5.7 Score=41.00 Aligned_cols=93 Identities=28% Similarity=0.385 Sum_probs=80.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++|+++|++.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+.. .....+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 57999999999999999999999999999999999999999999999999999999999986532 122457
Q ss_pred cccccCceeeeccccccccccC
Q psy8712 82 AQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
+++++|+++|..|..+....+.
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHH
Confidence 8999999999988776665543
No 144
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.09 E-value=0.32 Score=49.65 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=33.8
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.++|..|+.+|.+++. .+. ..+++|.+++++||+|||.++.+++
T Consensus 109 ~~g~~~pt~iQ~~ai~-~il----------------~~~~~~~l~~a~TGsGKT~a~~lp~ 152 (300)
T 3fmo_B 109 AMGFNRPSKIQENALP-LML----------------AEPPQNLIAQSQSGTGKTAAFVLAM 152 (300)
T ss_dssp HTTCCSCCHHHHHHHH-HHT----------------SSSCCCEEEECCTTSSHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHH-HHH----------------cCCCCeEEEECCCCCCccHHHHHHH
Confidence 4678899999988772 222 1256899999999999999877654
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=76.96 E-value=1 Score=41.70 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=18.2
Q ss_pred CCCCCeEEEecCCCCceeeeecc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
++...++..+..|+|||+.+...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34677899999999999976543
No 146
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.82 E-value=6.5 Score=40.81 Aligned_cols=93 Identities=29% Similarity=0.459 Sum_probs=81.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|+|++++.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+.. .....+
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---------~~~~~~ 91 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---------KLNKIQ 91 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------TSCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---------ccCCcc
Confidence 46999999999999999999999999999999999999999999999999999999999986532 112447
Q ss_pred cccccCceeeeccccccccccC
Q psy8712 82 AQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
+++++|+++|..|.......+.
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCHHHHHHHHHHHHHHh
Confidence 8999999999988877665553
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.54 E-value=5.1 Score=41.17 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=19.4
Q ss_pred CCCCCCeEEEecCCCCceeeeecc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
...+..++..+..|+|||..+-..
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l 65 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFV 65 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHH
Confidence 456778999999999999976543
No 148
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.53 E-value=1.4 Score=39.33 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.8
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
...+..|++.+|+|+|||
T Consensus 24 ~~~~~~vll~G~~GtGKt 41 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFE 41 (143)
T ss_dssp HTCSSCEEEEEETTCCHH
T ss_pred hCCCCcEEEECCCCccHH
Confidence 346789999999999999
No 149
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.23 E-value=4.7 Score=41.03 Aligned_cols=91 Identities=32% Similarity=0.539 Sum_probs=79.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC-CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
++|+++++++++.++|+++||..|+|+|.++|+.++.| ++++++||||||||++|++|+++.+.. ....
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCCC
Confidence 46999999999999999999999999999999999988 799999999999999999999986532 1245
Q ss_pred ccccccCceeeecccccccccc
Q psy8712 81 KAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
++++++|+++|..|..+.....
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCHHHHHHHHHHHHHH
Confidence 7899999999988877766544
No 150
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=75.96 E-value=7.7 Score=42.63 Aligned_cols=89 Identities=36% Similarity=0.380 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcccccc
Q psy8712 9 VLPEIGKAVEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVIS 86 (651)
Q Consensus 9 l~~~l~~~l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (651)
|+++++++|.++||..|||+|.++||.++ .|+|++++||||||||+||++|+++.+..... ......++++++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil~ 153 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 153 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEEc
Confidence 99999999999999999999999999999 67899999999999999999999998876211 111235789999
Q ss_pred Cceeeecccccccccc
Q psy8712 87 PTWILSVWDRDTAMAI 102 (651)
Q Consensus 87 p~~~l~~~~~~~~~~~ 102 (651)
|+++|+.|..+....+
T Consensus 154 Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKI 169 (563)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999888776554
No 151
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=75.95 E-value=6.2 Score=44.15 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=75.5
Q ss_pred cccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 4 FEEMGVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 4 f~~l~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
|+++++++++.++|++ +||..|+|+|.++|+.++.|+|+++.+|||||||+||++|++.. ...+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------------~g~~ 87 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------------DGFT 87 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------SSEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------CCcE
Confidence 4568999999999998 79999999999999999999999999999999999999999851 3478
Q ss_pred ccccCceeeecccccccccc
Q psy8712 83 QVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~ 102 (651)
++++|+++|+.++.+.....
T Consensus 88 lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHhc
Confidence 99999999998888776554
No 152
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=74.98 E-value=8.4 Score=42.68 Aligned_cols=89 Identities=36% Similarity=0.380 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcccccc
Q psy8712 9 VLPEIGKAVEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVIS 86 (651)
Q Consensus 9 l~~~l~~~l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (651)
|+++|+++|.++||..|||+|.++||.++ .|+|++++||||||||+||++|+++.+..... ......++++++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 78999999999999999999999998876211 112245789999
Q ss_pred Cceeeecccccccccc
Q psy8712 87 PTWILSVWDRDTAMAI 102 (651)
Q Consensus 87 p~~~l~~~~~~~~~~~ 102 (651)
|+++|+.|..+....+
T Consensus 103 Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKI 118 (579)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999888777654
No 153
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=74.85 E-value=6.8 Score=43.03 Aligned_cols=87 Identities=25% Similarity=0.302 Sum_probs=78.6
Q ss_pred CcccccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
|..|++|+|++++.++|++ +||..|+|+|.++|+.++.|+|+++.||||||||+||++|++.. .
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~ 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------N 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------S
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------C
Confidence 7899999999999999998 99999999999999999999999999999999999999999842 2
Q ss_pred CccccccCceeeecccccccccc
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
..+++++|+++|+.++.+.....
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCEEEECChHHHHHHHHHHHHHc
Confidence 35899999999998877765543
No 154
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=74.56 E-value=7.7 Score=41.30 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=54.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+||.++|+.-|..+++.+...+ +.+..+.|+.+..+....+. ...+|||+|. +-...+++.+
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE-------FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT-------CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCccc
Confidence 49999999999999999887653 78888999987766554442 3579999994 3445678889
Q ss_pred cceEeec
Q psy8712 362 CRFFVLD 368 (651)
Q Consensus 362 l~~lViD 368 (651)
++++|.-
T Consensus 369 v~~VI~~ 375 (434)
T 2db3_A 369 IKHVINY 375 (434)
T ss_dssp CCEEEES
T ss_pred CCEEEEE
Confidence 9998853
No 155
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=74.50 E-value=3.4 Score=48.27 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=59.5
Q ss_pred cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 20 MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 20 ~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
+|+ .|||||..+||.++.|+ ++.|.||||||++|.||++...+. +..+.+++|+.+|+.++....
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~------------G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT------------GKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT------------CSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh------------CCCEEEEeCCHHHHHHHHHHH
Confidence 899 99999999999999998 999999999999999999754432 346899999999999998877
Q ss_pred ccc
Q psy8712 100 MAI 102 (651)
Q Consensus 100 ~~~ 102 (651)
..+
T Consensus 141 ~~l 143 (997)
T 2ipc_A 141 GPV 143 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 156
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.35 E-value=1.7 Score=44.32 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=24.3
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+.++|||||+|.+........+..++...+. +.++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~------~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS------NCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG------GCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC------CcEEEEEe
Confidence 36789999999998622233345555554433 45666643
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.89 E-value=2.5 Score=43.85 Aligned_cols=20 Identities=0% Similarity=-0.256 Sum_probs=16.6
Q ss_pred CeEEEecCCCCceeeeeccc
Q psy8712 253 DYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~ 272 (651)
.++..+..|+|||..+-...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 79999999999999875433
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=73.88 E-value=7.4 Score=35.15 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=17.0
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
..+.+.+..+..|+|||..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHH
Confidence 345678999999999999754
No 159
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=73.47 E-value=4.3 Score=41.68 Aligned_cols=23 Identities=0% Similarity=-0.217 Sum_probs=18.4
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+..++..+..|+|||..+...+
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHH
Confidence 34568999999999999876554
No 160
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=73.28 E-value=11 Score=36.60 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=21.0
Q ss_pred EEEECchhhHHHHhCCCcccCCcceEeeccchhh
Q psy8712 340 IVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL 373 (651)
Q Consensus 340 IlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l 373 (651)
+-+.+...+.+.+.... .-.+.++|||||++.+
T Consensus 69 ~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 34556666666555432 2245789999999864
No 161
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.06 E-value=1.7 Score=38.73 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.8
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
..+..|++.+|+|+|||.
T Consensus 22 ~~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp TCCSCEEEESSTTSSHHH
T ss_pred CCCCCEEEECCCCCCHHH
Confidence 466899999999999993
No 162
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.92 E-value=4.1 Score=41.50 Aligned_cols=21 Identities=5% Similarity=-0.168 Sum_probs=17.6
Q ss_pred CCCCeEEEecCCCCceeeeec
Q psy8712 250 PPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~ 270 (651)
++.+++..+++|+|||..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357899999999999997654
No 163
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=72.79 E-value=2.2 Score=41.27 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=22.8
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre 295 (651)
.+..+..|+|||+.+...+.. ....+-+++|+-|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r-----~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRR-----TQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHH-----HHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHH-----HHHCCCEEEEEEeccC
Confidence 345667799999887665411 1123457888888754
No 164
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=71.77 E-value=0.56 Score=47.19 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=27.6
Q ss_pred ccccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.|+++|-..++.+.|.+ .-|..-.+..-+.+.+-.. +.+++.+|+|+|||.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~-~GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTL 59 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC-SEEEEESSTTSCHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC-CeEEEECCCCCcHHH
Confidence 58899988888888876 2222211211111111112 239999999999993
No 165
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=71.51 E-value=6.4 Score=36.75 Aligned_cols=36 Identities=6% Similarity=-0.123 Sum_probs=21.8
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSR 294 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTr 294 (651)
.+..+..|+|||+.+...+... ...+.+++++.|..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~-----~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIY-----KLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-----HHTTCEEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----HHCCCeEEEEeecc
Confidence 4567777999999875443111 01234677777774
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=70.92 E-value=1.8 Score=39.10 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.3
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|..+++.+|+|+|||-
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 58889999999999993
No 167
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=73.18 E-value=0.89 Score=41.86 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+.+.++..+ +.+..+.|+.+..+....+. ...+|||+|. +-...+++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gid~ 96 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAG-------INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD------VAARGIDI 96 (170)
Confidence 4589999999999998888887653 77788888877655444432 2578999993 22334566
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
..++++|.-+
T Consensus 97 ~~~~~Vi~~~ 106 (170)
T 2yjt_D 97 PDVSHVFNFD 106 (170)
Confidence 7777777543
No 168
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=70.31 E-value=6.6 Score=42.05 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=47.5
Q ss_pred hHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccc
Q psy8712 35 LILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAM 100 (651)
Q Consensus 35 ~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~ 100 (651)
.++.|+|++++||||||||++|++|+++.+.. .+.++++++|+++|+.|..+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHHHHHh
Confidence 56889999999999999999999999997754 14579999999999988887664
No 169
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.58 E-value=2 Score=46.05 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=14.4
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|+-+++.+|||||||-
T Consensus 166 ~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKST 182 (418)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred cCCeEEEECCCCCCHHH
Confidence 45678999999999993
No 170
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=69.07 E-value=0.63 Score=46.28 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=32.3
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.++|..|..+|.+++.+... .+|.+++++||+|||.++.+++
T Consensus 71 ~~g~~~~~~~Q~~~i~~~~~-------------------~~~~lv~a~TGsGKT~~~~l~~ 112 (262)
T 3ly5_A 71 EMGFTNMTEIQHKSIRPLLE-------------------GRDLLAAAKTGSGKTLAFLIPA 112 (262)
T ss_dssp HTTCCBCCHHHHHHHHHHHH-------------------TCCCEECCCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhC-------------------CCcEEEEccCCCCchHHHHHHH
Confidence 35788899999887743322 2589999999999999887654
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.42 E-value=4 Score=37.00 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=17.5
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
..+.+.+..+..|+|||..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHH
Confidence 3456789999999999997543
No 172
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.02 E-value=7.8 Score=39.99 Aligned_cols=24 Identities=8% Similarity=-0.218 Sum_probs=18.8
Q ss_pred CCCCCeEEEecCCCCceeeeeccc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+..++..+..|+|||..+....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHH
Confidence 456689999999999999764433
No 173
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=67.90 E-value=3.3 Score=45.74 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV--- 327 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~--- 327 (651)
.++.+++++||+|||.++...+.. ..++++|++||++|+.|+.+.+..+. +++..+.|-...
T Consensus 26 ~~~~~~~a~TGtGKT~~~l~~~~~--------~~~~~~~~~~t~~l~~q~~~~~~~l~-------~~~~~l~gr~~lC~~ 90 (540)
T 2vl7_A 26 GKTLLLNAKPGLGKTVFVEVLGMQ--------LKKKVLIFTRTHSQLDSIYKNAKLLG-------LKTGFLIGKSASCIY 90 (540)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH--------HTCEEEEEESCHHHHHHHHHHHGGGT-------CCEEEC---------
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh--------CCCcEEEEcCCHHHHHHHHHHHHhcC-------CcEEEecCCccccCC
Confidence 368999999999999887665422 25799999999999999998887752 333333321100
Q ss_pred -----H------------------------HH---------------HHHhccCCcEEEECchhhHHHHhCCCc------
Q psy8712 328 -----K------------------------DQ---------------MSVLSSGVDIVVGTPGRMEDLISGGHL------ 357 (651)
Q Consensus 328 -----~------------------------~q---------------~~~L~~~~dIlV~TP~rL~~ll~~~~l------ 357 (651)
. +. .+.+...+||||+|+..|.+....+.+
T Consensus 91 ~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~ 170 (540)
T 2vl7_A 91 AQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDD 170 (540)
T ss_dssp ------------------------------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTT
T ss_pred chhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCccccc
Confidence 0 00 011234579999999999874433222
Q ss_pred -ccCCcceEeeccchhhh
Q psy8712 358 -SLTHCRFFVLDEADGLL 374 (651)
Q Consensus 358 -~l~~l~~lViDEaD~ll 374 (651)
.+.+..++||||||.|.
T Consensus 171 ~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 171 CLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SCCGGGEEEEETTGGGGG
T ss_pred ccCcCCCEEEEEccccHH
Confidence 23567899999999984
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=66.94 E-value=6.8 Score=38.72 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.9
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.++.+++..+..|+|||..+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 567789999999999998654
No 175
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.77 E-value=1.6 Score=46.92 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=34.1
Q ss_pred cccccCCCCHHHHHHHHHc-CC--CCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 2 AAFEEMGVLPEIGKAVEEM-DW--LLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~-~~--~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.+|++.|-..+..+.|.+. -| ..|--.+..-++ --+-||+.+|+|+|||+
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTl 230 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTL 230 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHH
Confidence 3699999999998888752 22 233333333222 23789999999999994
No 176
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=66.68 E-value=2.8 Score=46.96 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=44.6
Q ss_pred ccccccccCCceeEEEEEeccCCceeecccc---------ccccccCCCCCCCCCcCC-CCccCCCcccCccCc------
Q psy8712 120 CRANKGVYGRGKYYYEATVTDEGLCRVGWST---------SQAVRDLGTDRFGFGFGG-TGKKSNNKQFDNYGE------ 183 (651)
Q Consensus 120 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~gg-~~~ks~~~~~~~~g~------ 183 (651)
.-+..|.+ +||+|+||.|.+..-..+|=+. +.+...++..+.+|..+= .|.. ...-+.+.
T Consensus 461 VLg~~~f~-sGrhyWEV~v~~~~~w~~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~---y~~~~~~~~~~~~~ 536 (602)
T 4b3n_A 461 VLGSQSIT-SGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVK---YSVFQDGSSHTPFA 536 (602)
T ss_dssp EEESSCBS-SSEEEEEEECTTCSCEEEEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTE---EEEEECCCSSCCSS
T ss_pred eccCCCCC-CEEEEEEEEECCCeeEEEEEeeccccccccccCCCcccCCCCcEEEEEEecCCe---EEEEeCCCcccccC
Confidence 34444554 7999999999998666666532 122233443433343321 1110 00001111
Q ss_pred ----cc---CCCcccccccccCCceeeee
Q psy8712 184 ----AF---GMHDVIGCLLDLDNMTVAFT 205 (651)
Q Consensus 184 ----~~---~~~d~ig~~~~~~~~~~~~~ 205 (651)
+. ..-..||.+||.+.|+|+|-
T Consensus 537 ~~~~~l~~~~~~~rvgv~ld~~~g~~sFy 565 (602)
T 4b3n_A 537 PFIVPLSVIICPDRVGVFVDYEACTVSFF 565 (602)
T ss_dssp CEEEECCCSSCCSEEEEEEETTTTEEEEE
T ss_pred CcccccccCCCCCEEEEEEecCCCEEEEE
Confidence 01 11257999999999999995
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=65.70 E-value=5.5 Score=37.19 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=17.0
Q ss_pred CCCeEEEecCCCCceeeeec
Q psy8712 251 PKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~ 270 (651)
+.+++..+..|+|||..+..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 47899999999999997654
No 178
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=65.42 E-value=11 Score=39.52 Aligned_cols=67 Identities=18% Similarity=0.088 Sum_probs=57.1
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccccc
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
.|+|+|.++++.++.+ ++++++|||+|||+++++|++..+.. ...++++++|+.+|..+........
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 6899999999999999 99999999999999999999987642 1457999999999987776655444
No 179
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=65.22 E-value=1.1 Score=43.71 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=31.3
Q ss_pred cccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 213 LAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 213 ~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+|..|..+|.+++..... .+|.+++++||+|||.++...+
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~-------------------g~~~l~~apTGsGKT~~~~l~~ 87 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALS-------------------GLDMVGVAQTGSGKTLSYLLPA 87 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHH-------------------TCCEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC-------------------CCCEEEECCCcCHHHHHHHHHH
Confidence 5688899999987743221 2589999999999999877543
No 180
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.11 E-value=2.9 Score=43.76 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=15.2
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
..|+-+++.+|||||||-
T Consensus 121 ~~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKST 138 (356)
T ss_dssp CSSEEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456689999999999993
No 181
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=64.07 E-value=4 Score=39.96 Aligned_cols=36 Identities=3% Similarity=-0.069 Sum_probs=22.5
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSR 294 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTr 294 (651)
.+..+..|+|||+.++..+.. ....+-+++|+-|..
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r-----~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRR-----FQIAQYKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-----HHTTTCCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHH-----HHHCCCeEEEEeecC
Confidence 455666699999877655411 123345778877764
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=64.05 E-value=1.9 Score=42.82 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=30.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHH-HhhHHh--HhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQ-AEAIPL--ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ-~~aip~--il~g~dvl~~a~TGsGKT~ 54 (651)
.|++++-..+..+.|.+.=. .+.+ .+.+.. +..++.+++.+|+|+|||.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~ 66 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTL 66 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHH
T ss_pred CHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHH
Confidence 57888877887777765210 0000 011111 2345789999999999993
No 183
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=63.66 E-value=4.3 Score=44.61 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=23.7
Q ss_pred HHHHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCcc
Q psy8712 15 KAVEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 15 ~~l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT 53 (651)
..|.++|.. ++.+..-+.+ +-.|..+++.+|||||||
T Consensus 237 ~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKT 274 (511)
T 2oap_1 237 IDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKT 274 (511)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHH
T ss_pred hhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHH
Confidence 344455532 3333343433 346778999999999999
No 184
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.87 E-value=1.1 Score=42.99 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=31.1
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+|..|..+|.+++. .+. ..+|.++++.||+|||.++..++
T Consensus 37 ~~g~~~~~~~Q~~~i~-~~~------------------~~~~~l~~apTGsGKT~~~~l~~ 78 (228)
T 3iuy_A 37 RVGILKPTPIQSQAWP-IIL------------------QGIDLIVVAQTGTGKTLSYLMPG 78 (228)
T ss_dssp HHTCCSCCHHHHHHHH-HHH------------------TTCCEEEECCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHH-HHh------------------CCCCEEEECCCCChHHHHHHHHH
Confidence 3567888889888773 222 12589999999999999877543
No 185
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=62.60 E-value=2.6 Score=41.95 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.2
Q ss_pred HhcCCceEeeecCCCCccc
Q psy8712 36 ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT~ 54 (651)
+..|+-+++.+|||||||-
T Consensus 22 i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp GCSSEEEEEECSTTCSHHH
T ss_pred hCCCCEEEEECCCCccHHH
Confidence 4567789999999999994
No 186
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=62.48 E-value=15 Score=42.37 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=67.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC-CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
..|+++++++.+.+.+++.+ .+|+++|+++|+.++.+ .+++++||||||||. ++|++..... . ... .+.
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-~-----~~~-~g~ 141 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-M-----PHL-ENT 141 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-C-----GGG-GTC
T ss_pred CCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-c-----ccC-CCc
Confidence 46999999999999999999 89999999999998855 579999999999998 6888732111 0 000 123
Q ss_pred ccccccCceeeeccccc
Q psy8712 81 KAQVISPTWILSVWDRD 97 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~ 97 (651)
.++++.|+++|+.+...
T Consensus 142 ~ilvl~P~r~La~q~~~ 158 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQ 158 (773)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred eEEecCchHHHHHHHHH
Confidence 57778899888776654
No 187
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=62.02 E-value=1.3 Score=43.11 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=31.3
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+|..|..+|.+++.. +. ..+|.+++++||+|||.++.+++
T Consensus 46 ~~g~~~~~~~Q~~~i~~-~~------------------~~~~~l~~a~TGsGKT~~~~l~~ 87 (245)
T 3dkp_A 46 DAGFQMPTPIQMQAIPV-ML------------------HGRELLASAPTGSGKTLAFSIPI 87 (245)
T ss_dssp HTTCCSCCHHHHHHHHH-HH------------------TTCCEEEECCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHH-Hh------------------CCCCEEEECCCCCcHHHHHHHHH
Confidence 45688899999887732 22 12589999999999999876543
No 188
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=61.86 E-value=1.4 Score=41.40 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=30.8
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.++|..|..+|.+++..... .+|.++++++|+|||.++..++
T Consensus 20 ~~g~~~~~~~Q~~~i~~~~~-------------------~~~~lv~apTGsGKT~~~~~~~ 61 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIALS-------------------GRDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCSSSTTHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHcc-------------------CCCEEEECCCCCchHHHHHHHH
Confidence 35678888999887632221 2689999999999998766543
No 189
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=61.68 E-value=8.9 Score=46.47 Aligned_cols=83 Identities=23% Similarity=0.185 Sum_probs=67.8
Q ss_pred cCCCCHHHHHHH-HHcCCCCCcHHHHhhHHhHhc----CC--ceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCC
Q psy8712 6 EMGVLPEIGKAV-EEMDWLLPTDVQAEAIPLILG----GG--DVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQG 78 (651)
Q Consensus 6 ~l~l~~~l~~~l-~~~~~~~pt~iQ~~aip~il~----g~--dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~ 78 (651)
.++.++...+.+ +.++|. |||+|.+||+.++. |+ |++++|+||||||.+|+++++..+..
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~------------ 651 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN------------ 651 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT------------
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh------------
Confidence 355677777776 457886 69999999999986 66 99999999999999999999875532
Q ss_pred CCccccccCceeeeccccccccc
Q psy8712 79 KAKAQVISPTWILSVWDRDTAMA 101 (651)
Q Consensus 79 ~~~~~~~~p~~~l~~~~~~~~~~ 101 (651)
+.++++++|+.+|+.|.......
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEechHHHHHHHHHHHHH
Confidence 45789999999999887776543
No 190
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.67 E-value=1.7 Score=42.67 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=28.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKT 53 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT 53 (651)
+|++++-.+++.+.++++-.... ...++..+- -.+.+++.+|+|+|||
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~---~~~~~~~~~~~~~~g~ll~G~~G~GKT 63 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLK---NPSRFHEMGARIPKGVLLVGPPGVGKT 63 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHH---CHHHHHHTTCCCCSEEEEECCTTSSHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHH---CHHHHHHcCCCCCCeEEEECCCCCCHH
Confidence 58888878887777765321100 011222110 0123999999999999
No 191
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=60.86 E-value=15 Score=41.68 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=61.1
Q ss_pred HHHHcCCC-----CCcHHHH-----hhHHhHh------cCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 16 AVEEMDWL-----LPTDVQA-----EAIPLIL------GGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 16 ~l~~~~~~-----~pt~iQ~-----~aip~il------~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
+|..+||. .|||||+ ++||.++ .|+|++++||||||||++|++|+++.+.. ..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~ 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KR 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TT
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 45567777 9999999 9999999 89999999999999999999999987654 14
Q ss_pred CccccccCceeeecccccccc
Q psy8712 80 AKAQVISPTWILSVWDRDTAM 100 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~ 100 (651)
.++++++|+++|+.|..+.+.
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTT
T ss_pred CcEEEEccHHHHHHHHHHHHh
Confidence 579999999999998877654
No 192
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=59.83 E-value=7 Score=40.47 Aligned_cols=17 Identities=47% Similarity=0.714 Sum_probs=15.0
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.+..+++.+|+|+|||.
T Consensus 50 ~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTL 66 (363)
T ss_dssp CCCCEEEECCTTSSHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 45789999999999995
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=59.76 E-value=5.1 Score=37.43 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.9
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
+.+++.+|+|+|||.
T Consensus 55 ~~~~l~G~~GtGKT~ 69 (202)
T 2w58_A 55 KGLYLHGSFGVGKTY 69 (202)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 789999999999994
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=59.03 E-value=6 Score=39.93 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=29.8
Q ss_pred ccccCCCCHHHHHHHHHc-CCCCCcHHHHhhHHh-HhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~ 54 (651)
.|++++-..++.+.|.+. .| |.......... +..++.+++.+|+|+|||.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~ 64 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTL 64 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCSEEEEECSSSSSHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHH--HhhCHHHHHHcCCCCCceEEEECCCCcCHHH
Confidence 588888778777777652 11 00000000011 2346789999999999993
No 195
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=59.01 E-value=6.8 Score=40.75 Aligned_cols=72 Identities=10% Similarity=0.169 Sum_probs=46.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+++.+...+ +.+..+.|+.+..++...+ + ...+|||+|. +-...+++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi 346 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARD-------FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDV 346 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTT-------CCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcC-------CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCc
Confidence 4579999999999999988887543 7778888888766555443 2 2578999994 23345667
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
.+++++|.-
T Consensus 347 p~v~~Vi~~ 355 (414)
T 3eiq_A 347 QQVSLVINY 355 (414)
T ss_dssp GGCSCEEES
T ss_pred cCCCEEEEe
Confidence 788887753
No 196
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=58.71 E-value=20 Score=38.16 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=42.1
Q ss_pred cCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
.|+|++++||||||||.+|++|+++.+.. .+.++++++|+++|+.|.....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~~~~ 51 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMYEAL 51 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHHHHh
Confidence 37899999999999999999999976654 1357899999999988866544
No 197
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=58.63 E-value=3.3 Score=40.13 Aligned_cols=37 Identities=3% Similarity=-0.052 Sum_probs=20.9
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre 295 (651)
.+..+..++|||+.....+.. ....+.+++|+.|...
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r-----~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRR-----GIYAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHH-----HHHTTCCEEEEEEC--
T ss_pred EEEECCCCCCHHHHHHHHHHH-----HHHcCCceEEEEeccC
Confidence 455666799999865544311 1122456788877653
No 198
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.04 E-value=1.6 Score=42.62 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=31.4
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+|..|..+|.+++.. +. ..+|.++++++|+|||.++..++
T Consensus 40 ~~g~~~~~~~Q~~~i~~-i~------------------~~~~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 40 LASYQRPTPIQKNAIPA-IL------------------EHRDIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp TTTCCSCCHHHHHHHHH-HH------------------TTCCEEEECCTTSSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHH-Hh------------------CCCCEEEECCCCChHHHHHHHHH
Confidence 35688899999887732 22 12589999999999999877544
No 199
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=58.04 E-value=1.7 Score=42.02 Aligned_cols=41 Identities=7% Similarity=0.091 Sum_probs=30.6
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.++|..|..+|.+++.... ..+|.++++++|+|||.++..+
T Consensus 42 ~~~~~~~~~~Q~~~i~~~~-------------------~~~~~li~a~TGsGKT~~~~~~ 82 (236)
T 2pl3_A 42 EAQYRLVTEIQKQTIGLAL-------------------QGKDVLGAAKTGSGKTLAFLVP 82 (236)
T ss_dssp HTTCCBCCHHHHHHHHHHH-------------------TTCCEEEECCTTSCHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh-------------------CCCCEEEEeCCCCcHHHHHHHH
Confidence 4567888889888763221 1258999999999999987654
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.04 E-value=10 Score=37.69 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=14.4
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+..+++.+|+|+|||.
T Consensus 50 ~~~vll~G~~GtGKT~ 65 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTE 65 (310)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 5789999999999993
No 201
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.03 E-value=5.6 Score=38.84 Aligned_cols=50 Identities=26% Similarity=0.233 Sum_probs=28.8
Q ss_pred cccccCCCCHHHHHHHHHcC--CCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMD--WLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
..|++++-.+.+.+.|.++- +..|...+.-. +.-.+.+++.+|+|+|||.
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~ 60 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTL 60 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHH
Confidence 35888888888877776520 11111111100 0113469999999999993
No 202
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.93 E-value=3.4 Score=43.45 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.0
Q ss_pred HhcCCceEeeecCCCCccc
Q psy8712 36 ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT~ 54 (651)
+..|+-+++.+|||||||-
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 3467789999999999993
No 203
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.56 E-value=9.4 Score=41.78 Aligned_cols=22 Identities=0% Similarity=-0.206 Sum_probs=17.9
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
++++.++..+..|+|||.++..
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3567899999999999997543
No 204
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=57.40 E-value=2.2 Score=42.53 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=28.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT~ 54 (651)
.|+++.-.+++.+.++++-..... ..++.-+- -.+.+++.+|+|+|||.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~---~~~l~~~~~~~~~gvll~Gp~GtGKTt 88 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKN---PSRFHEMGARIPKGVLLVGPPGVGKTH 88 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHC---HHHHHHTTCCCCCEEEEECCTTSSHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHC---HHHHHHcCCCCCCeEEEECCCcChHHH
Confidence 588888888887777654211000 11121110 11239999999999993
No 205
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=57.24 E-value=7.6 Score=40.47 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=15.0
Q ss_pred CCCeEE--EecCCCCceeeeec
Q psy8712 251 PKDYIA--VCNAPKQNVKHSES 270 (651)
Q Consensus 251 ~~~~i~--~~~~gsGKT~~~~~ 270 (651)
+...++ .+..|+|||..+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 345666 79999999997544
No 206
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.09 E-value=9.2 Score=35.46 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=53.8
Q ss_pred ceeEEEEEecc---CCceeecccccc-ccccCC-----CCCCCCCcCCCCccCCC-cccCccCc---ccCCCcccccccc
Q psy8712 130 GKYYYEATVTD---EGLCRVGWSTSQ-AVRDLG-----TDRFGFGFGGTGKKSNN-KQFDNYGE---AFGMHDVIGCLLD 196 (651)
Q Consensus 130 ~~~~~e~~~~~---~~~~~~~~~~~~-~~~~~g-----~~~~~~~~gg~~~ks~~-~~~~~~g~---~~~~~d~ig~~~~ 196 (651)
.++..++.-.+ .|-.|+|.-+.+ +.+++. ....+|.+.|.+-.... .--+.||. +...||+||-+++
T Consensus 50 E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~~~~~L~~~~Wv~~~~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~ 129 (170)
T 2e63_A 50 RVFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSATGLKGGSWVVSGCSVLRDGRSVLEEYGQDLDQLGEGDRVGVERT 129 (170)
T ss_dssp CEEEEEEEEECCSSCCCCEEEEESSCTTSCCCCSSGGGCCSSEEEESSSEEEESSCEEEESCSSCGGGCCSSCCEEEEEC
T ss_pred CEEEEEEEeecCCcceeEEEEEEccChhhccCCCChhhCCCCeEEEeccccccCCcccchhccccccccCCCCEEEEEEc
Confidence 45555554333 355577776652 222211 12355777664433221 23466775 5679999998877
Q ss_pred cCCceeeeeccCcccccccc
Q psy8712 197 LDNMTVAFTKNGQHLGLAFN 216 (651)
Q Consensus 197 ~~~~~~~~~~ng~~~g~af~ 216 (651)
.+|.+.|..||.+.|+++.
T Consensus 130 -~~G~l~~~iNg~~~g~~~~ 148 (170)
T 2e63_A 130 -VAGELRLWVNGRDCGVAAT 148 (170)
T ss_dssp -TTSCEEEEESSCEEEEEEC
T ss_pred -CCcEEEEEECCccceeeEc
Confidence 5599999999999999984
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=56.98 E-value=7.3 Score=39.60 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+-+++||||||.|-... ...+.+.+..-|. +..+++++
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~------~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPE------YAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCT------TEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCC------CeEEEEEE
Confidence 467899999999986533 2345555655444 45555554
No 208
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=56.77 E-value=5 Score=38.14 Aligned_cols=36 Identities=3% Similarity=-0.168 Sum_probs=21.0
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCC
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPS 293 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PT 293 (651)
=+...+..|+|||+....++... ...+.+++++.|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~-----~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRF-----QIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-----HHTTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-----HHcCCeEEEEccc
Confidence 35678899999997655444110 0112456666665
No 209
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=56.58 E-value=1.8 Score=41.20 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=30.8
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.++|..|..+|.+++..... .+|.++++++|+|||.++..++
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~~-------------------~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 31 DCGFEHPSEVQHECIPQAIL-------------------GMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp HTTCCCCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhC-------------------CCCEEEECCCCCchhhhhhHHH
Confidence 35688888898887632221 2579999999999999876544
No 210
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=56.31 E-value=1.9 Score=42.41 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=30.5
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.++|..|..+|.+++.... ..+|.++++.+|+|||.++..+
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~-------------------~~~~~lv~a~TGsGKT~~~~~~ 100 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL-------------------QGRDIIGLAETGSGKTGAFALP 100 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH-------------------TTCCEEEECCTTSCHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh-------------------CCCCEEEEcCCCCCchhHhHHH
Confidence 3567888999988763222 1268999999999999987654
No 211
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=56.27 E-value=1.8 Score=40.53 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=30.9
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+|..|..+|.+++..... .+|.++++++|+|||.++..++
T Consensus 18 ~~~~~~~~~~Q~~~i~~~~~-------------------~~~~li~~~TGsGKT~~~~~~~ 59 (207)
T 2gxq_A 18 GRGLTTPTPIQAAALPLALE-------------------GKDLIGQARTGTGKTLAFALPI 59 (207)
T ss_dssp HTTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHcC-------------------CCCEEEECCCCChHHHHHHHHH
Confidence 35678888888887732211 2589999999999999876544
No 212
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=55.91 E-value=1.9 Score=41.63 Aligned_cols=41 Identities=10% Similarity=-0.052 Sum_probs=30.1
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
..+|..|..+|.+++.. +. ..+|.++++.+|+|||.++..+
T Consensus 41 ~~g~~~~~~~Q~~~i~~-~~------------------~~~~~l~~a~TGsGKT~~~~l~ 81 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPL-GR------------------CGLDLIVQAKSGTGKTCVFSTI 81 (230)
T ss_dssp HTTCCSCCHHHHHHHHH-HH------------------TTCCEEEECCTTSSHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHH-Hh------------------CCCCEEEECCCCCcHHHHHHHH
Confidence 35678888888887632 11 1368999999999999986643
No 213
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=55.76 E-value=22 Score=37.94 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCCCCcHHHHhhHHhHhcCCce-EeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 21 DWLLPTDVQAEAIPLILGGGDV-LMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il~g~dv-l~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
||..|||+|+ +||.++.|+|+ +++||||||||++|++|+++.+.. .+.++++++|+++|+.|..+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7899999985 89999999998 999999999999999999987654 1357899999999998887765
No 214
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=55.65 E-value=7.4 Score=39.74 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=29.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHh-----cCCceEeeecCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLIL-----GGGDVLMAAETGSGKT 53 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il-----~g~dvl~~a~TGsGKT 53 (651)
.|++++=..++.+.|.+.=. .|++ -|.+. ..+.+|+.+|+|+|||
T Consensus 10 ~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT 59 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKS 59 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHH
T ss_pred CHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHH
Confidence 58899888888888865210 0111 01222 2367999999999999
No 215
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=55.01 E-value=8.7 Score=42.03 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=24.8
Q ss_pred CCCCCcHHHHhhHHhHhcCCceEeeecCCCCcc
Q psy8712 21 DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT 53 (651)
.+..-..+=..++-.+..|+.|++.+|+|+|||
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT 55 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKS 55 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHH
Confidence 344444444555666778999999999999999
No 216
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=54.97 E-value=26 Score=36.06 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=18.5
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.++.+++..+..|+|||.++-.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHH
Confidence 5678899999999999997543
No 217
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=54.78 E-value=20 Score=33.73 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=22.7
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSR 294 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTr 294 (651)
.+..+..|+|||+.+...+... ...+.+++++.|+.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~-----~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRA-----KIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----HHTTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHH-----HHCCCEEEEEEecc
Confidence 5566777999998876554111 12345788888774
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=54.76 E-value=4.4 Score=42.27 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=16.1
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..|.-+++.+|||||||
T Consensus 172 i~~G~~i~ivG~sGsGKS 189 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKT 189 (361)
T ss_dssp HHTTCCEEEEESSSSCHH
T ss_pred HhcCCEEEEECCCCCCHH
Confidence 347889999999999999
No 219
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.65 E-value=6.3 Score=38.27 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=29.8
Q ss_pred cccccCCCCHHHHHHHHHcC--CCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMD--WLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
..|++++=..++.+.|.++- +..|....... +-..+.+++.+|+|+|||.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~ 54 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTL 54 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHH
Confidence 35888887888887776531 11111111110 1234679999999999994
No 220
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=54.58 E-value=1.9 Score=41.16 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=30.2
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.++|..|..+|.+++..... .+|.++++++|+|||.++..+
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~~-------------------~~~~lv~~pTGsGKT~~~~~~ 71 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPIIE-------------------GHDVLAQAQSGTGKTGTFSIA 71 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHH
T ss_pred HCCCCCCcHHHHHHHHHHhc-------------------CCCEEEECCCCCcHHHHHHHH
Confidence 45678888888887643221 257999999999999886543
No 221
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=54.46 E-value=9.2 Score=38.88 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=18.0
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.|+.+++..+..|+|||.++-
T Consensus 49 ~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 467899999999999999754
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=54.36 E-value=6 Score=38.83 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.5
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
..+..|++.+|+|+|||.
T Consensus 27 ~~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKEL 44 (265)
T ss_dssp TSCSCEEEECCTTSCHHH
T ss_pred CCCCCEEEECCCCCcHHH
Confidence 356899999999999993
No 223
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=53.99 E-value=6.4 Score=35.58 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=14.0
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+++.+|+|+|||.
T Consensus 43 ~~~~ll~G~~G~GKT~ 58 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTA 58 (195)
T ss_dssp SCEEEEECCTTSCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 3679999999999993
No 224
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=53.80 E-value=30 Score=34.63 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=19.0
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.+++.+++..+..|+|||..+-.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHH
Confidence 35778899999999999997644
No 225
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=52.81 E-value=10 Score=38.48 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=29.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHh-----cCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLIL-----GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il-----~g~dvl~~a~TGsGKT~ 54 (651)
.|++++-..++.+.|.++=. .|.. .|.+. ..+.+|+.+|+|+|||.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~ 66 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSY 66 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHH
T ss_pred CHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHH
Confidence 58888888888888876311 0111 11111 23579999999999994
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.74 E-value=3.6 Score=43.74 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=31.4
Q ss_pred ccccCCCCHHHHHHHHHc-CC--CCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DW--LLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~--~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
+|++.|=..+..+.|++. -| ..|--.+.--+ ---+.||+.+|+|+|||+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTL 197 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHH
Confidence 688888778888888652 22 12222222211 123789999999999994
No 227
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.30 E-value=4.7 Score=41.54 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=16.0
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
..|..+++.+|||||||-
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 478899999999999993
No 228
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=51.70 E-value=32 Score=36.99 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=59.7
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccccc
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
..|+|.|.+||+.++.++|+++++|||||||.+|++|++..+.. ++.++++++|+++|..|..+.....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999999887643 1347999999999998887766554
No 229
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=51.54 E-value=1.2 Score=43.27 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=30.7
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.++|..|..+|.+++.+... .+|.++++++|+|||.++..+
T Consensus 47 ~~g~~~~~~~Q~~ai~~i~~-------------------~~~~li~apTGsGKT~~~~l~ 87 (237)
T 3bor_A 47 AYGFEKPSAIQQRAIIPCIK-------------------GYDVIAQAQSGTGKTATFAIS 87 (237)
T ss_dssp HHTCCSCCHHHHHHHHHHHT-------------------TCCEEECCCSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhC-------------------CCCEEEECCCCCcHHHHHHHH
Confidence 45688899999887743221 257999999999999886644
No 230
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.29 E-value=4.6 Score=38.43 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=14.6
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.++.+++.+|+|+|||
T Consensus 51 ~~~~~ll~G~~G~GKT 66 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRT 66 (242)
T ss_dssp SCSEEEEECSTTSSHH
T ss_pred CCCeEEEECCCCCCHH
Confidence 4678999999999999
No 231
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=51.14 E-value=15 Score=39.86 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=19.2
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.+++.+++..+..|+|||.++-.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHH
Confidence 45778899999999999997543
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=50.83 E-value=23 Score=37.85 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=35.1
Q ss_pred CCcceEeeccchhhh---hccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 360 THCRFFVLDEADGLL---KQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 360 ~~l~~lViDEaD~ll---~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
.+.+++|||++-++- +..+...+..+.+.+.. ..-+++++|+... +....++.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p------d~vlLVlDa~~gq-~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP------DDVILVIDASIGQ-KAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC------SEEEEEEEGGGGG-GGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC------cceEEEEeCccch-HHHHHHHHHh
Confidence 467899999997643 33355566666655543 3566778888754 5666666654
No 233
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=50.73 E-value=13 Score=37.05 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=28.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHH-hhHH-hHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQA-EAIP-LILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~-~aip-~il~g~dvl~~a~TGsGKT~ 54 (651)
.|++++=..++.+.|.+.=. .|... +... ....++.+++.+|+|+|||.
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~ 69 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTL 69 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHH
T ss_pred CHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHH
Confidence 47777767777777754210 00000 0000 01135789999999999994
No 234
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=50.54 E-value=4.4 Score=43.21 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=28.5
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
--++|+||+|.+... +.+..+++...+. +..+++.+=++.
T Consensus 280 ~~~~~lDE~~~l~~~---~~l~~~~~~~R~~-----g~~~~~~~Qs~~ 319 (437)
T 1e9r_A 280 RLWLFIDELASLEKL---ASLADALTKGRKA-----GLRVVAGLQSTS 319 (437)
T ss_dssp CEEEEESCGGGSCBC---SSHHHHHHHCTTT-----TEEEEEEESCHH
T ss_pred cEEEEEEcccccccc---hhHHHHHHHHhcc-----CCEEEEEecCHH
Confidence 358999999988653 3466777777664 577777776664
No 235
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=50.47 E-value=11 Score=35.91 Aligned_cols=31 Identities=29% Similarity=0.075 Sum_probs=24.7
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.-|.-|..++.-+-.|.=+.+.+|+|||||.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKST 37 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTY 37 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHH
Confidence 3345566777778888889999999999994
No 236
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=50.44 E-value=32 Score=38.50 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcccccc
Q psy8712 7 MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVIS 86 (651)
Q Consensus 7 l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (651)
+++++.+.++|... ...|||+|+.+||.++.|+|++++||||||||++|++|+++.+.. ...++++++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~vLvl~ 222 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRTLILA 222 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEc
Confidence 66778877777665 589999999999999999999999999999999999999998765 135789999
Q ss_pred Cceeeeccccccc
Q psy8712 87 PTWILSVWDRDTA 99 (651)
Q Consensus 87 p~~~l~~~~~~~~ 99 (651)
|+++|+.|....+
T Consensus 223 PtreLa~Qi~~~l 235 (618)
T 2whx_A 223 PTRVVAAEMEEAL 235 (618)
T ss_dssp SSHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHh
Confidence 9999998887665
No 237
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=49.75 E-value=3.8 Score=37.13 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+++.+|+|+|||.
T Consensus 43 ~~~vll~G~~G~GKT~ 58 (187)
T 2p65_A 43 KNNPILLGDPGVGKTA 58 (187)
T ss_dssp SCEEEEESCGGGCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 4689999999999993
No 238
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=49.57 E-value=1.7 Score=41.43 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=30.1
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.++|..|..+|.+++..... .+|.++++++|+|||.++..+
T Consensus 21 ~~g~~~~~~~Q~~~i~~~~~-------------------~~~~lv~a~TGsGKT~~~~~~ 61 (219)
T 1q0u_A 21 TLRFYKPTEIQERIIPGALR-------------------GESMVGQSQTGTGKTHAYLLP 61 (219)
T ss_dssp HTTCCSCCHHHHHHHHHHHH-------------------TCCEEEECCSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHH
Confidence 35677888888887632221 258999999999999987654
No 239
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=49.40 E-value=35 Score=38.66 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=54.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH---HHHHHhcc---CCcEEEECchhhHHHHhCCCccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK---DQMSVLSS---GVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~---~q~~~L~~---~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..+|+++|+.-+..+.+.++..+ +.+..++|+.+.. .+.+.+++ ..+|||+|. +-...+++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g-------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRG-------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC
T ss_pred CCEEEEcCHHHHHHHHHHHHhcC-------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc
Confidence 34777999998888888887642 7888999998876 34444543 479999994 33445677
Q ss_pred CCcceEeeccchhh
Q psy8712 360 THCRFFVLDEADGL 373 (651)
Q Consensus 360 ~~l~~lViDEaD~l 373 (651)
++++||.-.....
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 8999998777543
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=48.81 E-value=7.6 Score=39.48 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=14.6
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+..+++.+|||+|||.
T Consensus 152 ~~~lll~G~~GtGKT~ 167 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSY 167 (308)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 6899999999999993
No 241
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=48.72 E-value=68 Score=35.49 Aligned_cols=19 Identities=0% Similarity=-0.048 Sum_probs=16.0
Q ss_pred CCeEEEecCCCCceeeeec
Q psy8712 252 KDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~ 270 (651)
...++.+.+|+|||+..-.
T Consensus 215 pHlLIaG~TGSGKS~~L~t 233 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNA 233 (574)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHH
Confidence 5689999999999997543
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=48.66 E-value=5.3 Score=36.85 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.5
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|+=+++.+|+|||||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999993
No 243
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=48.15 E-value=21 Score=36.16 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=17.1
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.++.+++..+..|+|||.++.
T Consensus 53 ~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 356679999999999999643
No 244
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=47.98 E-value=17 Score=38.02 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=17.8
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.++.+++..+..|+|||.++-
T Consensus 146 ~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 457889999999999998754
No 245
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=47.64 E-value=25 Score=35.73 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=18.5
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.|+++++..+..|+|||..+-.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHH
Confidence 5678999999999999997543
No 246
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=47.64 E-value=18 Score=40.95 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCcHHHHhhHHh-HhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccc
Q psy8712 24 LPTDVQAEAIPL-ILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRD 97 (651)
Q Consensus 24 ~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 97 (651)
+|...|++.|+. +.+++|++++||||||||.+|.+|+++. ..++++++|+++|+.|...
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------------g~~vLVl~PTReLA~Qia~ 275 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------------GYKVLVLNPSVAATLGFGA 275 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------------TCCEEEEESCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------------CCeEEEEcchHHHHHHHHH
Confidence 355555555555 5578899999999999999999998861 3378999999999988755
No 247
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=47.61 E-value=6.7 Score=39.87 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=19.0
Q ss_pred hhHHhHhcCCceEeeecCCCCccc
Q psy8712 31 EAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 31 ~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.+.-.+..|+.+++.+|+|+|||.
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTL 61 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHH
Confidence 334445578999999999999993
No 248
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.59 E-value=12 Score=42.20 Aligned_cols=76 Identities=20% Similarity=0.141 Sum_probs=62.3
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccc-cccccc
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWD-RDTAMA 101 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~~~~~ 101 (651)
..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+..... .....++++++|+++|..|. .+....
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH------HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999998766321 01125689999999999998 776655
Q ss_pred cCC
Q psy8712 102 ITP 104 (651)
Q Consensus 102 ~~~ 104 (651)
..+
T Consensus 80 ~~~ 82 (699)
T 4gl2_A 80 FLK 82 (699)
T ss_dssp HHT
T ss_pred HcC
Confidence 543
No 249
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=47.45 E-value=27 Score=34.89 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=16.5
Q ss_pred CCCCeEEEecCCCCceeeee
Q psy8712 250 PPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~ 269 (651)
++.+++..+..|+|||..+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 45689999999999998643
No 250
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=47.23 E-value=5.3 Score=41.00 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=11.2
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++.+|||||||
T Consensus 6 i~i~GptgsGKt 17 (322)
T 3exa_A 6 VAIVGPTAVGKT 17 (322)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCcCCHH
Confidence 678999999999
No 251
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=46.95 E-value=3.1 Score=43.25 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.0
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+|+.+|+|+|||.
T Consensus 84 ~~~iLL~GppGtGKT~ 99 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSY 99 (355)
T ss_dssp CCCEEEECSTTSCHHH
T ss_pred CceEEEECCCCCcHHH
Confidence 3579999999999994
No 252
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=46.79 E-value=25 Score=34.98 Aligned_cols=79 Identities=37% Similarity=0.560 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCc
Q psy8712 9 VLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPT 88 (651)
Q Consensus 9 l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 88 (651)
|+|+|.++|+++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++. ..++++++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 6799999999999999999999999999999999999999999999999998862 3468999999
Q ss_pred eeeecccccccccc
Q psy8712 89 WILSVWDRDTAMAI 102 (651)
Q Consensus 89 ~~l~~~~~~~~~~~ 102 (651)
++|..|..+....+
T Consensus 66 ~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 66 RELTRQVASHIRDI 79 (337)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877766554
No 253
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=46.49 E-value=5.5 Score=40.77 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=11.2
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++++|||||||
T Consensus 13 i~i~GptgsGKt 24 (316)
T 3foz_A 13 IFLMGPTASGKT 24 (316)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCccCHH
Confidence 688999999999
No 254
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.32 E-value=15 Score=37.23 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=13.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
..|++.+|+|+|||.
T Consensus 56 ~~vll~G~~GtGKT~ 70 (338)
T 3pfi_A 56 DHILFSGPAGLGKTT 70 (338)
T ss_dssp CCEEEECSTTSSHHH
T ss_pred CeEEEECcCCCCHHH
Confidence 579999999999994
No 255
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=46.21 E-value=5.6 Score=41.17 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=12.6
Q ss_pred CceEeeecCCCCcc
Q psy8712 40 GDVLMAAETGSGKT 53 (651)
Q Consensus 40 ~dvl~~a~TGsGKT 53 (651)
.-+++.+|||||||
T Consensus 41 ~lIvI~GPTgsGKT 54 (339)
T 3a8t_A 41 KLLVLMGATGTGKS 54 (339)
T ss_dssp EEEEEECSTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 35889999999999
No 256
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=46.16 E-value=6.4 Score=39.42 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.0
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+..+++.+|+|+|||.
T Consensus 67 ~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTT 82 (309)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4579999999999994
No 257
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=45.65 E-value=10 Score=38.93 Aligned_cols=16 Identities=50% Similarity=0.850 Sum_probs=14.0
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+++.+|+|+|||.
T Consensus 70 ~~~vLl~GppGtGKT~ 85 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTA 85 (368)
T ss_dssp TCEEEEEESTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3579999999999993
No 258
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=45.59 E-value=8.7 Score=40.11 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=17.8
Q ss_pred HHhHhcCCc--eEeeecCCCCcccee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af 56 (651)
|..++.|-+ |++-+.||||||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 444567866 666789999999665
No 259
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=45.40 E-value=32 Score=36.64 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.|+.+++..+..|+|||.++-.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4678999999999999997643
No 260
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.39 E-value=5.5 Score=43.04 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=31.9
Q ss_pred ccccCCCCHHHHHHHHHc-CCC--CCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DWL--LPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~~--~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
+|++.|=..++.+.|.+. -|. .|--.+.-- +---+-||+.+|+|+|||+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTl 258 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTL 258 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHH
Confidence 688999888888888762 221 221122111 1124789999999999994
No 261
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=44.96 E-value=2.9 Score=41.37 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=13.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
+.+++.+|+|+|||.
T Consensus 65 ~~vLl~G~~GtGKT~ 79 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTA 79 (272)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 579999999999994
No 262
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.35 E-value=5.7 Score=42.68 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=30.3
Q ss_pred ccccCCCCHHHHHHHHHc-CC--CCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DW--LLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~--~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
+|++.|=..+..+.|.+. -| ..|--.+.-- +---+-||+.+|+|+|||+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTl 230 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTL 230 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHH
Confidence 588888777877777552 11 1222222111 1123789999999999994
No 263
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=44.03 E-value=9.4 Score=38.65 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.1
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
....|++.+|||+|||.
T Consensus 24 ~~~~vLi~Ge~GtGKt~ 40 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKEL 40 (304)
T ss_dssp TTSCEEEESCTTSCHHH
T ss_pred CCCcEEEECCCCchHHH
Confidence 46789999999999994
No 264
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=43.74 E-value=4.9 Score=43.28 Aligned_cols=92 Identities=26% Similarity=0.489 Sum_probs=80.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
.+|++++|+|+++++|.++||..|||+|.+|||.++.| +|++++||||||||++|++|+++.+.. ....
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---------~~~~ 162 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------ANKY 162 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT---------TSCS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh---------cCCC
Confidence 47999999999999999999999999999999999987 999999999999999999999985532 1223
Q ss_pred CccccccCceeeecccccccccc
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
+++++++|+++|+.|.......+
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQM 185 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHHHHHHHHHHH
Confidence 47999999999999886655444
No 265
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=43.73 E-value=37 Score=36.46 Aligned_cols=72 Identities=18% Similarity=0.055 Sum_probs=60.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccccc
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
.|+|+|.++||.++.|+|++++||||||||++|++|+++.+... ......++++++|+++|..|.......+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKF-------PCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhc-------ccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999877541 1112457899999999998877766554
No 266
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=43.65 E-value=17 Score=37.56 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+|+.+|+|+|||.
T Consensus 117 ~~~vLl~GppGtGKT~ 132 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTL 132 (357)
T ss_dssp CSEEEEESSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4689999999999993
No 267
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=43.54 E-value=6.9 Score=37.41 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.0
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|+-|++.+|||+|||
T Consensus 33 ~g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKS 48 (205)
T ss_dssp TTEEEEEECCCTTTTH
T ss_pred CCEEEEEECCCCCCHH
Confidence 4567999999999998
No 268
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=43.14 E-value=4.4 Score=41.60 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=25.8
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
...-++||||+|.+.++ +.+..+++. +.. ...+.-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~q---~~L~~l~~~-~~~--~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLSE---KILQYFEKW-ISS--KNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCCT---HHHHHHHHH-HHC--SSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhcc---hHHHHHHhc-ccc--cCCcEEEEEEecCcc
Confidence 34568999999999832 233344432 110 112467778888874
No 269
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.90 E-value=5.6 Score=42.61 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=30.0
Q ss_pred ccccCCCCHHHHHHHHHc-CC--CCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DW--LLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~--~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
+|++.|=..++.+.|.+. -| ..|--.+.-- +---+-+|+.+|+|+|||+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~ 221 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTM 221 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHH
Confidence 688888777877777551 11 1121122111 1123679999999999993
No 270
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=42.60 E-value=14 Score=34.09 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=13.2
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
..+++.+|+|+|||.
T Consensus 39 ~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 39 PHLLFSGPPGTGKTA 53 (226)
T ss_dssp CCEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 359999999999993
No 271
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.41 E-value=7.4 Score=41.65 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred ccccCCCCHHHHHHHHHc-C--CCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-D--WLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
+|++.|=..++.+.|.+. . +..|--.+.--++ --+-||+.+|+|+|||+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTL 231 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHH
Confidence 688898777777777652 1 2233333322211 23679999999999994
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=41.90 E-value=7.2 Score=38.31 Aligned_cols=13 Identities=46% Similarity=0.447 Sum_probs=11.6
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+++.+|||||||-
T Consensus 4 i~I~G~~GSGKST 16 (253)
T 2ze6_A 4 HLIYGPTCSGKTD 16 (253)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 6889999999993
No 273
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=41.60 E-value=12 Score=38.58 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=18.3
Q ss_pred HHhHhcCCc--eEeeecCCCCccceee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAFC 57 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af~ 57 (651)
|..++.|-+ |++-+.||||||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 334567866 6777999999997653
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=41.57 E-value=8.1 Score=36.29 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=13.1
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|+=+.+.+|+|||||
T Consensus 3 ~g~~i~lvGpsGaGKS 18 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKS 18 (198)
T ss_dssp --CCEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4677899999999999
No 275
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=41.35 E-value=23 Score=35.26 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHh-hHHhHhcCC-----ceEeeecCCCCcccee
Q psy8712 11 PEIGKAVEEMDWLLPTDVQAE-AIPLILGGG-----DVLMAAETGSGKTGAF 56 (651)
Q Consensus 11 ~~l~~~l~~~~~~~pt~iQ~~-aip~il~g~-----dvl~~a~TGsGKT~af 56 (651)
..|.+-|+-.|+. |++.. ++-..+.|+ -+++.+|.|+|||..+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3588888888875 55533 345556553 4999999999999544
No 276
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=41.20 E-value=5.9 Score=42.54 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=28.0
Q ss_pred ccccCCCCHHHHHHHHHc-CCC--CCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DWL--LPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~~--~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.|++++=..++.+.|.+. -|. .|.-.+ ......+.+|+.+|+|+|||.
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~ 182 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSY 182 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHH
Confidence 477777677777777542 110 000000 011234689999999999993
No 277
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=41.17 E-value=45 Score=34.64 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCce
Q psy8712 11 PEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTW 89 (651)
Q Consensus 11 ~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 89 (651)
+++.+.+++ +|| .|||+|.++||.++.|+|++++||||||||++|++|+++.... +.++++++|++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~------------~~~~lil~Pt~ 74 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK------------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT------------TCCEEEEESSH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC------------CCEEEEEECCH
Confidence 456666766 566 7999999999999999999999999999999999998875521 56799999999
Q ss_pred eeeccccccccccCC
Q psy8712 90 ILSVWDRDTAMAITP 104 (651)
Q Consensus 90 ~l~~~~~~~~~~~~~ 104 (651)
+|..|..+....+.+
T Consensus 75 ~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD 89 (414)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcc
Confidence 999998887766543
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.79 E-value=7.8 Score=34.60 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.6
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+++.+++|||||.
T Consensus 4 I~l~G~~GsGKsT 16 (179)
T 3lw7_A 4 ILITGMPGSGKSE 16 (179)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999994
No 279
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=40.75 E-value=22 Score=39.96 Aligned_cols=84 Identities=15% Similarity=0.040 Sum_probs=65.2
Q ss_pred HHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeee
Q psy8712 13 IGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILS 92 (651)
Q Consensus 13 l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~ 92 (651)
+.++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+... .......+++++|+++|.
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-------PQGQKGKVVFFANQIPVY 74 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS-------CTTCCCCEEEECSSHHHH
T ss_pred CCCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhC-------ccCCCCeEEEEECCHHHH
Confidence 4578889999999999999999999999999999999999999999999877541 111125789999999999
Q ss_pred ccccccccccC
Q psy8712 93 VWDRDTAMAIT 103 (651)
Q Consensus 93 ~~~~~~~~~~~ 103 (651)
.|..+......
T Consensus 75 ~Q~~~~~~~~~ 85 (696)
T 2ykg_A 75 EQNKSVFSKYF 85 (696)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 98877765554
No 280
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=40.61 E-value=11 Score=39.10 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=17.1
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|-+ |++-+.||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34567766 566789999999764
No 281
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=40.53 E-value=12 Score=38.76 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=17.3
Q ss_pred HHhHhcCCc--eEeeecCCCCcccee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af 56 (651)
|..++.|.+ |++-+.||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 334567866 566689999999664
No 282
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=40.18 E-value=28 Score=37.22 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccccc
Q psy8712 21 DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAM 100 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~ 100 (651)
|+...+.+| ...+..|+|++++||||||||++|++|+++.+.. .+.++++++|+++|+.|..+...
T Consensus 6 g~~q~~~~~---~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 6 GGQQMGRGS---PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp ------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTT
T ss_pred cHHHHHHHH---HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhc
Confidence 444444444 4456778999999999999999999999997764 14578999999999998877663
No 283
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=40.05 E-value=13 Score=38.73 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=17.6
Q ss_pred HHhHhcCCc--eEeeecCCCCcccee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af 56 (651)
|..++.|.+ |++-+.||||||.+.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344567876 566689999999764
No 284
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=39.95 E-value=13 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHhHhcCCc--eEeeecCCCCcccee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af 56 (651)
|..++.|.+ |++-+.||||||.+.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 344567876 566789999999765
No 285
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=39.73 E-value=13 Score=38.89 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=16.5
Q ss_pred hHhcCCc--eEeeecCCCCcccee
Q psy8712 35 LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 35 ~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.|-+ |++-+.||||||.+.
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3567866 566789999999664
No 286
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=39.56 E-value=13 Score=38.64 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=16.7
Q ss_pred hHhcCCc--eEeeecCCCCcccee
Q psy8712 35 LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 35 ~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.|-+ |++-+.||||||...
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 3467765 666799999999765
No 287
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=39.56 E-value=11 Score=39.93 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=17.0
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|.+ |++-+.||||||.+.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34567765 666789999999664
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=39.48 E-value=8.5 Score=35.12 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.5
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
..+.-+++.+++|||||.
T Consensus 9 ~~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTT 26 (180)
T ss_dssp CCCCCEEEECSTTSSHHH
T ss_pred ccCCeEEEEeCCCCCHHH
Confidence 456789999999999994
No 289
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=39.40 E-value=13 Score=38.30 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=18.9
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.+..++.|-+ |++-+.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4555678876 566799999999665
No 290
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=39.39 E-value=14 Score=38.45 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=17.3
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|-+ |++-+.||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34567765 666799999999765
No 291
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=39.28 E-value=13 Score=38.70 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=17.0
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|.+ |++-+.||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 33567766 566789999999664
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.10 E-value=8.5 Score=39.88 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.8
Q ss_pred ceEeeecCCCCcc
Q psy8712 41 DVLMAAETGSGKT 53 (651)
Q Consensus 41 dvl~~a~TGsGKT 53 (651)
-+++++|||||||
T Consensus 9 lI~I~GptgSGKT 21 (340)
T 3d3q_A 9 LIVIVGPTASGKT 21 (340)
T ss_dssp EEEEECSTTSSHH
T ss_pred eEEEECCCcCcHH
Confidence 4789999999999
No 293
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=38.97 E-value=13 Score=38.64 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=16.7
Q ss_pred hHhcCCc--eEeeecCCCCcccee
Q psy8712 35 LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 35 ~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.|-+ |++-+.||||||.+.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3567765 666799999999765
No 294
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=38.96 E-value=13 Score=38.77 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=16.8
Q ss_pred hHhcCCc--eEeeecCCCCcccee
Q psy8712 35 LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 35 ~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.|-+ |++-+.||||||.+.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3567766 566799999999765
No 295
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=38.77 E-value=9.5 Score=36.04 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.1
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|.=+++.+|+|||||-
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 45668889999999993
No 296
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.68 E-value=19 Score=47.97 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCcHHHH-hhHHh---HhcCCceEeeecCCCCcccee
Q psy8712 11 PEIGKAVEEMDWLLPTDVQA-EAIPL---ILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 11 ~~l~~~l~~~~~~~pt~iQ~-~aip~---il~g~dvl~~a~TGsGKT~af 56 (651)
..|.+++.++|+. |+|.|. ++|.+ +.-..-|++.+|||||||.++
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH
Confidence 4566777789985 566554 34433 335567999999999999765
No 297
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=38.65 E-value=68 Score=36.21 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=78.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.|++|||++++.+.++++||..|+|+|.++|+. ++.|++++++||||||||.+|.+|+++.+... +.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----------GG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----------CS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----------CC
Confidence 4699999999999999999999999999999999 78999999999999999999999999876541 35
Q ss_pred ccccccCceeeecccccccc
Q psy8712 81 KAQVISPTWILSVWDRDTAM 100 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~ 100 (651)
++++++|+++|+.+......
T Consensus 77 ~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHG
T ss_pred eEEEEeCcHHHHHHHHHHHH
Confidence 78999999999988776653
No 298
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=38.38 E-value=98 Score=36.55 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hccC---CcEEEECchhhHHHHhCCC
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSSG---VDIVVGTPGRMEDLISGGH 356 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~~---~dIlV~TP~rL~~ll~~~~ 356 (651)
.+.++||.+++++-+..+.+.+.... ++++..+.|+.+..+.... ++++ ++|+|+|. +-...
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~------v~~~G 569 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRERE------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE------IGSEG 569 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTT------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC------CTTCS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc------hhhcC
Confidence 46689999999999998888876421 2788899999776544433 3343 89999993 23445
Q ss_pred cccCCcceEeeccch
Q psy8712 357 LSLTHCRFFVLDEAD 371 (651)
Q Consensus 357 l~l~~l~~lViDEaD 371 (651)
+++..+.++|+-+.+
T Consensus 570 lDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 570 RNFQFASHMVMFDLP 584 (968)
T ss_dssp SCCTTCCEEECSSCC
T ss_pred CCcccCcEEEEecCC
Confidence 778889999987665
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=38.22 E-value=9 Score=34.96 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=13.7
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|.=+.+.+|+|||||-
T Consensus 8 ~gei~~l~G~nGsGKST 24 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKST 24 (171)
T ss_dssp SSEEEEEECCTTSCHHH
T ss_pred CCEEEEEECCCCCCHHH
Confidence 34557889999999993
No 300
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.19 E-value=14 Score=37.44 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=14.1
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+++.+|+|+|||.
T Consensus 45 ~~~vLl~G~~GtGKT~ 60 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKST 60 (350)
T ss_dssp GCCEEEECCGGGCTTH
T ss_pred CceEEEECCCCccHHH
Confidence 4679999999999994
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=38.10 E-value=9.9 Score=35.51 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=14.5
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.+.-+++.+++|||||
T Consensus 24 ~~~~i~l~G~~GsGKs 39 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKT 39 (199)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCCEEEEEcCCCCCHH
Confidence 4678999999999999
No 302
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=38.02 E-value=10 Score=38.36 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.1
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+++.+|+|+|||.
T Consensus 37 ~~~lll~G~~GtGKT~ 52 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTH 52 (324)
T ss_dssp CSSEEEECSSSSSHHH
T ss_pred CCeEEEECCCCCcHHH
Confidence 4689999999999993
No 303
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=37.96 E-value=14 Score=34.47 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.7
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++.+|+|+|||.
T Consensus 47 ~~ll~G~~G~GKT~ 60 (250)
T 1njg_A 47 AYLFSGTRGVGKTS 60 (250)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58999999999994
No 304
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=37.76 E-value=9.1 Score=39.34 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.3
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++++|||||||-
T Consensus 7 ~i~i~GptGsGKTt 20 (323)
T 3crm_A 7 AIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999993
No 305
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=37.75 E-value=14 Score=38.34 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=18.6
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.|..++.|-+ |++-+.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 3455677876 566799999999765
No 306
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=37.69 E-value=24 Score=36.83 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.4
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.||+.+|+|+|||.
T Consensus 148 ~~~vLL~GppGtGKT~ 163 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTM 163 (389)
T ss_dssp CSEEEEESSTTSCHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4789999999999994
No 307
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=37.68 E-value=13 Score=38.50 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.9
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.|..++.|-+ |++-+.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4555678876 456689999999765
No 308
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=37.64 E-value=14 Score=38.52 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=16.9
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|-+ |++-+.||||||.+.
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 34567865 567799999999654
No 309
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=37.58 E-value=12 Score=41.72 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=12.8
Q ss_pred ceEeeecCCCCcc
Q psy8712 41 DVLMAAETGSGKT 53 (651)
Q Consensus 41 dvl~~a~TGsGKT 53 (651)
+||+.+|+|+|||
T Consensus 329 ~vLL~GppGtGKT 341 (595)
T 3f9v_A 329 HILIIGDPGTAKS 341 (595)
T ss_dssp CEEEEESSCCTHH
T ss_pred ceEEECCCchHHH
Confidence 8999999999999
No 310
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=37.30 E-value=9.7 Score=40.41 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=11.2
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++++|||||||
T Consensus 5 i~i~GptgsGKt 16 (409)
T 3eph_A 5 IVIAGTTGVGKS 16 (409)
T ss_dssp EEEEECSSSSHH
T ss_pred EEEECcchhhHH
Confidence 678999999999
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=37.16 E-value=9.7 Score=35.76 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=12.5
Q ss_pred CceEeeecCCCCcc
Q psy8712 40 GDVLMAAETGSGKT 53 (651)
Q Consensus 40 ~dvl~~a~TGsGKT 53 (651)
+-++++||+|+|||
T Consensus 2 RpIVi~GPSG~GK~ 15 (186)
T 1ex7_A 2 RPIVISGPSGTGKS 15 (186)
T ss_dssp CCEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 45899999999999
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=36.88 E-value=10 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.8
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+..+++.+++|||||.
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4578999999999993
No 313
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=36.80 E-value=11 Score=37.75 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.8
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
...|++.+|+|+|||
T Consensus 38 ~~~vll~G~~GtGKT 52 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKT 52 (324)
T ss_dssp CCCCEEECCTTCCCH
T ss_pred CCcEEEECCCCCCHH
Confidence 368999999999999
No 314
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.80 E-value=15 Score=38.99 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=18.8
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.|..++.|-+ |++-+.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4555678877 456689999999775
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=36.77 E-value=10 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.1
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.=+.+.+|+|||||
T Consensus 5 ~g~~i~l~G~~GsGKS 20 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKG 20 (207)
T ss_dssp CCCEEEEECSTTSCHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4667889999999999
No 316
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=36.70 E-value=15 Score=38.35 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=17.0
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|-+ |++-+.||||||.+.
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34567865 566789999999665
No 317
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.69 E-value=34 Score=36.15 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.6
Q ss_pred CCCCCCCeEEEecCCCCceeeee
Q psy8712 247 KHEPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 247 ~~~~~~~~i~~~~~gsGKT~~~~ 269 (651)
..+||++++..++-|+|||..+-
T Consensus 178 gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHH
Confidence 35689999999999999998643
No 318
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=36.48 E-value=10 Score=38.08 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=13.3
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
+-+++.+|+|+|||.
T Consensus 37 ~~lLl~GppGtGKT~ 51 (293)
T 3t15_A 37 LILGIWGGKGQGKSF 51 (293)
T ss_dssp SEEEEEECTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 568999999999994
No 319
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=36.18 E-value=14 Score=38.66 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=18.6
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.+..++.|-+ |++-+.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3455678866 566799999999765
No 320
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=36.04 E-value=11 Score=35.72 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=23.8
Q ss_pred cceEeeccchhhhhcc--chHHHHHHHhcCCCccCCCCceeEEEEeec
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~il~~lp~~~~~~~~~Q~l~~SAT 407 (651)
-.+|||||||.++... ..+. .+++..+...+. ...++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~--~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRH--QGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTT--TTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCc--CCeEEEEECCC
Confidence 4589999999985321 1111 123333332221 24688888776
No 321
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=35.94 E-value=12 Score=35.69 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.3
Q ss_pred hcCCceEeeecCCCCcc
Q psy8712 37 LGGGDVLMAAETGSGKT 53 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT 53 (651)
-.|.=+.+.+|+|||||
T Consensus 21 ~~G~~~~lvGpsGsGKS 37 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKG 37 (218)
T ss_dssp -CCCCEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 35777889999999999
No 322
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=35.80 E-value=19 Score=47.27 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCcHHHH-hhHH---hHhcCCceEeeecCCCCcccee
Q psy8712 11 PEIGKAVEEMDWLLPTDVQA-EAIP---LILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 11 ~~l~~~l~~~~~~~pt~iQ~-~aip---~il~g~dvl~~a~TGsGKT~af 56 (651)
..+.+++.++|+. |++.+. +++. .+.....|++.+|||||||.++
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 4566777888875 666553 3332 2345678999999999999754
No 323
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=35.70 E-value=15 Score=38.59 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=16.4
Q ss_pred hHhcCCc--eEeeecCCCCcccee
Q psy8712 35 LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 35 ~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.|-+ |++-+.||||||.+.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3567765 666789999999654
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=35.67 E-value=11 Score=35.71 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=15.3
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
..|+=+++.+|+|+|||-
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 367778999999999993
No 325
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=35.66 E-value=8.9 Score=35.23 Aligned_cols=17 Identities=41% Similarity=0.775 Sum_probs=14.4
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|.-+++.+|+|||||-
T Consensus 8 ~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKST 24 (191)
T ss_dssp TTEEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46678899999999993
No 326
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=35.66 E-value=15 Score=38.72 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=17.1
Q ss_pred HhHhcCCc--eEeeecCCCCcccee
Q psy8712 34 PLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 34 p~il~g~d--vl~~a~TGsGKT~af 56 (651)
..++.|.+ |++-+.||||||.+.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 34567765 666789999999764
No 327
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.59 E-value=16 Score=38.86 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.7
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.|..++.|-+ |++-+.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555678876 456689999999765
No 328
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=35.41 E-value=11 Score=38.52 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+++.+|+|+|||.
T Consensus 44 ~~~vll~G~~G~GKT~ 59 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTA 59 (387)
T ss_dssp CCCEEECBCTTSSHHH
T ss_pred CCcEEEECCCCCCHHH
Confidence 4689999999999993
No 329
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=35.29 E-value=58 Score=36.91 Aligned_cols=89 Identities=25% Similarity=0.182 Sum_probs=80.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.|++|||++++.+.++++||..|+|+|.++|+. ++.|++++++||||||||.+|.+|+++.+... +.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----------GGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----------CSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CCE
Confidence 599999999999999999999999999999998 89999999999999999999999999877641 357
Q ss_pred cccccCceeeecccccccccc
Q psy8712 82 AQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~ 102 (651)
+++++|+++|+.+.......+
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGG
T ss_pred EEEEcCcHHHHHHHHHHHHHH
Confidence 899999999998887766433
No 330
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=35.27 E-value=8 Score=39.87 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+++.++..+ +.+..+.|+.+..++...+. ...+|+|+|. .-...+++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gldi 325 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC-------CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC------hhhcCCCc
Confidence 4589999999999988888876542 67778888876555443332 2568999994 22334566
Q ss_pred CCcceEee
Q psy8712 360 THCRFFVL 367 (651)
Q Consensus 360 ~~l~~lVi 367 (651)
.+++++|.
T Consensus 326 ~~~~~Vi~ 333 (394)
T 1fuu_A 326 QQVSLVIN 333 (394)
T ss_dssp --------
T ss_pred ccCCEEEE
Confidence 77777764
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=35.06 E-value=11 Score=35.25 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.4
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..|.=+++++|+|||||
T Consensus 9 ~~~~~~i~l~G~sGsGKs 26 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKG 26 (204)
T ss_dssp CCCCCCEEEECCTTSCHH
T ss_pred cccCCEEEEECCCCCCHH
Confidence 345778899999999999
No 332
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=34.95 E-value=22 Score=33.42 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=25.9
Q ss_pred CcHHHHhhHHhHhcCC--ceEeeecCCCCccceee
Q psy8712 25 PTDVQAEAIPLILGGG--DVLMAAETGSGKTGAFC 57 (651)
Q Consensus 25 pt~iQ~~aip~il~g~--dvl~~a~TGsGKT~af~ 57 (651)
.++-|+.|+..++... =.++.+.-||+||-..+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~ 69 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERV 69 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHH
Confidence 4567999999998665 46778999999996653
No 333
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=34.88 E-value=23 Score=36.19 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHcCCCC-----CcH-HHHhhHHhHhc----------------CCceEeeecCCCCcc
Q psy8712 8 GVLPEIGKAVEEMDWLL-----PTD-VQAEAIPLILG----------------GGDVLMAAETGSGKT 53 (651)
Q Consensus 8 ~l~~~l~~~l~~~~~~~-----pt~-iQ~~aip~il~----------------g~dvl~~a~TGsGKT 53 (651)
-.++++++..++.|+.. +|. .-.+..+.+.. |+-|++.++.|+|||
T Consensus 91 ~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKS 158 (314)
T 1ko7_A 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKS 158 (314)
T ss_dssp CCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHH
T ss_pred CCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHH
Confidence 35788999999988862 222 22222333332 778999999999996
No 334
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=34.84 E-value=21 Score=35.57 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.+-+++||||+|.+... ....+..++...+. +..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~------~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSS------NVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTT------TEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCC------CCeEEEEe
Confidence 35578999999988542 23345555555443 45555544
No 335
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.61 E-value=11 Score=33.94 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=11.7
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+++.++.|||||.
T Consensus 5 I~i~G~~GsGKST 17 (181)
T 1ly1_A 5 ILTIGCPGSGKST 17 (181)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEecCCCCCHHH
Confidence 6889999999994
No 336
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=34.35 E-value=13 Score=37.17 Aligned_cols=15 Identities=47% Similarity=0.694 Sum_probs=13.4
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
..+++.+|+|+|||.
T Consensus 48 ~~~ll~G~~GtGKt~ 62 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTE 62 (311)
T ss_dssp EEEEEESCSSSSHHH
T ss_pred eEEEEECCCCcCHHH
Confidence 479999999999994
No 337
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.32 E-value=70 Score=34.00 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=19.6
Q ss_pred CCCCCCCeEEEecCCCCceeeee
Q psy8712 247 KHEPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 247 ~~~~~~~~i~~~~~gsGKT~~~~ 269 (651)
..+||++++..+.-|+|||..+-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHH
Confidence 35789999999999999999643
No 338
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=34.26 E-value=16 Score=38.56 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=22.0
Q ss_pred CcHHHHhhHH--------hHhcCCc--eEeeecCCCCcccee
Q psy8712 25 PTDVQAEAIP--------LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 25 pt~iQ~~aip--------~il~g~d--vl~~a~TGsGKT~af 56 (651)
|..-|.++.. .++.|.+ |++-+.||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4455665543 3567766 566799999999765
No 339
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=34.10 E-value=15 Score=38.26 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=15.4
Q ss_pred cCCc--eEeeecCCCCcccee
Q psy8712 38 GGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 38 ~g~d--vl~~a~TGsGKT~af 56 (651)
+|.+ |++-+.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 688899999999654
No 340
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.07 E-value=20 Score=36.35 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=23.7
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
..++|+|||+|.+... ....+..++...+. +..+++.+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~------~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSG------VTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTT------TEEEEEEE
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCC------CceEEEEe
Confidence 4579999999988642 23445556665544 35555544
No 341
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.97 E-value=13 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.0
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|.=+.+.+|+|||||-
T Consensus 6 ~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 45667889999999993
No 342
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=33.86 E-value=26 Score=34.77 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.8
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
.+++.+|+|+|||.
T Consensus 40 ~~ll~G~~G~GKt~ 53 (319)
T 2chq_A 40 HLLFSGPPGTGKTA 53 (319)
T ss_dssp CEEEESSSSSSHHH
T ss_pred eEEEECcCCcCHHH
Confidence 59999999999993
No 343
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=33.82 E-value=18 Score=37.97 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=17.6
Q ss_pred HHhHhcCCc--eEeeecCCCCcccee
Q psy8712 33 IPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 33 ip~il~g~d--vl~~a~TGsGKT~af 56 (651)
|..++.|-+ |++-+.||||||.+.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344567866 566689999999665
No 344
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=33.77 E-value=12 Score=33.90 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=13.0
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
+.-+++.++.|||||
T Consensus 3 ~~~i~l~G~~GsGKS 17 (178)
T 1qhx_A 3 TRMIILNGGSSAGKS 17 (178)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred ceEEEEECCCCCCHH
Confidence 445899999999999
No 345
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=33.69 E-value=13 Score=34.93 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=13.7
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|.=|.+.+|+|||||-
T Consensus 21 ~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST 37 (208)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35567889999999993
No 346
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=33.62 E-value=9.6 Score=37.25 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=13.7
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+++.+|+|+|||.
T Consensus 44 ~~~vll~G~~GtGKT~ 59 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTL 59 (268)
T ss_dssp CSCCCCBCSSCSSHHH
T ss_pred CceEEEECCCCCcHHH
Confidence 3569999999999993
No 347
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=33.34 E-value=14 Score=38.40 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.3
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
...+++.+|+|+|||.
T Consensus 72 ~~~ill~Gp~GtGKT~ 87 (376)
T 1um8_A 72 KSNILLIGPTGSGKTL 87 (376)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CCCEEEECCCCCCHHH
Confidence 5689999999999993
No 348
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=33.03 E-value=8.9 Score=41.78 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=62.5
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 4 f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
|...++++++.+++.+.||..|+++|.+||+.++.| +|++++||||||||++|++|+++.+.. ...+.+
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~---------~~~~~~ 191 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA---------SVPKPQ 191 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT---------TCCSCC
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh---------CCCCce
Confidence 566788999999999999999999999999999998 999999999999999999999986633 112447
Q ss_pred cccccCceeeeccccccccccC
Q psy8712 82 AQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
+++++|+++|..|..+......
T Consensus 192 vLvl~P~~~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 192 AICLAPSRELARQIMDVVTEMG 213 (508)
T ss_dssp EEEECSCHHHHHHHHHHHHHHS
T ss_pred EEEEECcHHHHHHHHHHHHHhC
Confidence 8999999999988877665553
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=32.91 E-value=18 Score=34.04 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=21.4
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.++.+.+. +.+-.|.-+++.++.|||||-
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHH
Confidence 45665555 345567788999999999993
No 350
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=32.62 E-value=14 Score=34.00 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=11.9
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
=+.+.+|+|||||-
T Consensus 3 ii~l~GpsGaGKsT 16 (186)
T 3a00_A 3 PIVISGPSGTGKST 16 (186)
T ss_dssp CEEEESSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999993
No 351
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=32.56 E-value=13 Score=37.73 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCcHHHHhhHHhHhcC----CceEeeecCCCCccceeehhhHH
Q psy8712 24 LPTDVQAEAIPLILGG----GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g----~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.||.+. .+..+++| .=++++|++|+||| +|++-+..
T Consensus 51 i~TG~~--~LD~~lgGl~~G~l~li~G~pG~GKT-tl~l~ia~ 90 (315)
T 3bh0_A 51 VPSGFT--ELDRMTYGYKRRNFVLIAARPSMGKT-AFALKQAK 90 (315)
T ss_dssp BCCSCH--HHHHHHSSBCTTCEEEEECCTTSSHH-HHHHHHHH
T ss_pred ccCChH--HHHhhcCCCCCCcEEEEEeCCCCCHH-HHHHHHHH
Confidence 455543 45555643 45888999999999 55554443
No 352
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=32.52 E-value=13 Score=33.26 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=11.6
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+++.++.|||||.
T Consensus 4 i~l~G~~GsGKsT 16 (173)
T 3kb2_A 4 IILEGPDCCFKST 16 (173)
T ss_dssp EEEECSSSSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999993
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.49 E-value=13 Score=33.77 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.4
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
+=.++.+|+|||||.
T Consensus 27 g~~~i~G~NGsGKSt 41 (182)
T 3kta_A 27 GFTAIVGANGSGKSN 41 (182)
T ss_dssp SEEEEEECTTSSHHH
T ss_pred CcEEEECCCCCCHHH
Confidence 356789999999993
No 354
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.37 E-value=12 Score=35.29 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=13.2
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
|.-+++.+|+|||||
T Consensus 23 G~~~~i~G~~GsGKT 37 (235)
T 2w0m_A 23 GFFIALTGEPGTGKT 37 (235)
T ss_dssp TCEEEEECSTTSSHH
T ss_pred CCEEEEEcCCCCCHH
Confidence 456889999999999
No 355
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=32.17 E-value=14 Score=38.54 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=28.2
Q ss_pred CcceEeeccchhhhhc---cchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 361 HCRFFVLDEADGLLKQ---GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~---gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
.-.++|+||||.++.. .+.+.+..+++..++. +.-+++.|=++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~-----g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKY-----NGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGG-----TCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhh-----CeEEEEEcCCHH
Confidence 3568899999998852 2445567777776663 455555555543
No 356
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=32.15 E-value=15 Score=33.04 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=13.7
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+.-+++.++.|||||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4568999999999993
No 357
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=32.09 E-value=40 Score=34.80 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
++..-++..+..|+|||. ||.|+...+..-+ -++..+.......
T Consensus 59 ~~G~iv~I~G~pGsGKTt-----------------------------Lal~la~~~~~~g-------~~vlyi~~E~~~~ 102 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTT-----------------------------VALHAVANAQAAG-------GIAAFIDAEHALD 102 (349)
T ss_dssp ETTSEEEEEESTTSSHHH-----------------------------HHHHHHHHHHHTT-------CCEEEEESSCCCC
T ss_pred cCCeEEEEECCCCCCHHH-----------------------------HHHHHHHHHHhCC-------CeEEEEECCCCcC
Q ss_pred HHHHHhcc--CCcEEEECchhhHHHHhCCCcccCC--cceEeeccchhhh----------hc-------cchHHHHHHHh
Q psy8712 329 DQMSVLSS--GVDIVVGTPGRMEDLISGGHLSLTH--CRFFVLDEADGLL----------KQ-------GYGNLIDRMHK 387 (651)
Q Consensus 329 ~q~~~L~~--~~dIlV~TP~rL~~ll~~~~l~l~~--l~~lViDEaD~ll----------~~-------gf~~~i~~il~ 387 (651)
........ .-++.|..|..+.+.+..-.-...+ +++|||||...++ +. .....+..+..
T Consensus 103 ~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~ 182 (349)
T 2zr9_A 103 PEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 182 (349)
T ss_dssp HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHH
Q ss_pred cCCCccCCCCceeEEEEe
Q psy8712 388 QIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 388 ~lp~~~~~~~~~Q~l~~S 405 (651)
.+... ++-+++.+
T Consensus 183 ~a~~~-----~~tVI~in 195 (349)
T 2zr9_A 183 ALNNS-----GTTAIFIN 195 (349)
T ss_dssp HHHHH-----TCEEEEEE
T ss_pred HHHHh-----CCEEEEEe
No 358
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=31.73 E-value=13 Score=39.85 Aligned_cols=16 Identities=50% Similarity=0.810 Sum_probs=14.1
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+|+.+|+|+|||.
T Consensus 63 ~~~iLl~GppGtGKT~ 78 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTA 78 (456)
T ss_dssp TCEEEEECCTTSSHHH
T ss_pred CCeEEEECCCcCCHHH
Confidence 3689999999999993
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=31.72 E-value=14 Score=33.13 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.4
Q ss_pred ceEeeecCCCCccce
Q psy8712 41 DVLMAAETGSGKTGA 55 (651)
Q Consensus 41 dvl~~a~TGsGKT~a 55 (651)
=.++.+|+|||||-.
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467899999999943
No 360
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=31.66 E-value=16 Score=40.10 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.8
Q ss_pred CCceEeeecCCCCccce
Q psy8712 39 GGDVLMAAETGSGKTGA 55 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~a 55 (651)
+..+++++.||||||.+
T Consensus 167 ~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG 183 (512)
T ss_dssp SCSEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999944
No 361
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.61 E-value=13 Score=35.50 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=13.6
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.-+++.+|+|||||.
T Consensus 23 G~~~~i~G~~GsGKTt 38 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTI 38 (247)
T ss_dssp TCEEEEEECTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4568999999999993
No 362
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=31.52 E-value=20 Score=38.44 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=16.8
Q ss_pred hHhcCCc--eEeeecCCCCcccee
Q psy8712 35 LILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 35 ~il~g~d--vl~~a~TGsGKT~af 56 (651)
.++.|-+ |++-+.||||||.+.
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 3467866 566789999999765
No 363
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=31.46 E-value=93 Score=35.05 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=76.6
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 3 AFEEMG--VLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 3 ~f~~l~--l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
.|++|+ |+|++.++++++||..|+|+|.++++.++.|+|++++||||||||.+|.+|+++.+.. +.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 599999 9999999999999999999999999999999999999999999999999999987653 35
Q ss_pred ccccccCceeeecccccccccc
Q psy8712 81 KAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
++++++|+++|+.+.......+
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTT
T ss_pred cEEEEeCcHHHHHHHHHHHHHH
Confidence 7899999999998887766433
No 364
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=31.34 E-value=13 Score=35.69 Aligned_cols=31 Identities=6% Similarity=0.192 Sum_probs=20.8
Q ss_pred CCcceEeeccchhhhh-----ccchHHHHHHHhcCC
Q psy8712 360 THCRFFVLDEADGLLK-----QGYGNLIDRMHKQIP 390 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~-----~gf~~~i~~il~~lp 390 (651)
.+.+++|+||.-.+++ ......+..+++.+.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~ 169 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL 169 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 3567899999988876 333444666666653
No 365
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.10 E-value=15 Score=34.48 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=14.9
Q ss_pred hHhcCCceEeeecCCCCccc
Q psy8712 35 LILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 35 ~il~g~dvl~~a~TGsGKT~ 54 (651)
.+-.|.=+.+.+|+|||||-
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 45567778899999999993
No 366
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=30.71 E-value=10 Score=41.08 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHcC--CCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMD--WLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.|++++=..+..+.|.++- +..|...+.-. +--.+.|++.+|+|+|||.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~ 64 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTL 64 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHH
Confidence 5888887777766665521 11121111100 0012459999999999994
No 367
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=30.66 E-value=9.3 Score=39.05 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHHHcCCCCCcH--------------HHHhhHHhH--------hcCCceEeeecCCCCcc-ce
Q psy8712 6 EMGVLPEIGKAVEEMDWLLPTD--------------VQAEAIPLI--------LGGGDVLMAAETGSGKT-GA 55 (651)
Q Consensus 6 ~l~l~~~l~~~l~~~~~~~pt~--------------iQ~~aip~i--------l~g~dvl~~a~TGsGKT-~a 55 (651)
.+..++++++..++.++...+. +..+-.|.+ ..|.-|++.++.|+||| +|
T Consensus 92 g~~pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~~~~H~~~v~~~g~gvli~G~sG~GKStla 164 (312)
T 1knx_A 92 SFTDPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQIHGVLLEVFGVGVLLTGRSGIGKSECA 164 (312)
T ss_dssp TTCCCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCCEEEEEEEEEETTEEEEEEESSSSSHHHHH
T ss_pred CCCCCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhcceeEEEEEEECCEEEEEEcCCCCCHHHHH
Confidence 4557889999999988874431 111111111 14678999999999996 44
No 368
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=30.39 E-value=15 Score=39.94 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.||+.+|+|+|||.
T Consensus 238 ~~~vLL~GppGtGKT~ 253 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTL 253 (489)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCcEEEECcCCCCHHH
Confidence 4679999999999995
No 369
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.73 E-value=30 Score=35.07 Aligned_cols=42 Identities=14% Similarity=0.378 Sum_probs=27.6
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.+.+++||||+|. ++......+.+++...+. +..+|+.|-..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~------~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSK------NIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT------TEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC------CCEEEEEeCCH
Confidence 4668999999999 454445566677776554 46666665544
No 370
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.72 E-value=38 Score=36.87 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
+.+++.+|+|+|||.
T Consensus 78 ~~lLL~GppGtGKTt 92 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTT 92 (516)
T ss_dssp SEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 679999999999993
No 371
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=29.66 E-value=14 Score=35.29 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=17.8
Q ss_pred HHhHhcC-----CceEeeecCCCCccceeeh
Q psy8712 33 IPLILGG-----GDVLMAAETGSGKTGAFCL 58 (651)
Q Consensus 33 ip~il~g-----~dvl~~a~TGsGKT~af~l 58 (651)
+..+++| .=++++|++|+||| +|++
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT-~l~l 48 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKT-TFAA 48 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHH-HHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHH-HHHH
Confidence 4455653 35899999999999 4443
No 372
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=29.52 E-value=12 Score=35.87 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCCCcHHHHhhHHhHhcC----CceEeeecCCCCccceeehhhHH
Q psy8712 13 IGKAVEEMDWLLPTDVQAEAIPLILGG----GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 13 l~~~l~~~~~~~pt~iQ~~aip~il~g----~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
|.+-|+=.|+ .|... -.++..++.+ +.+++.+|.|+|||. |++.++.
T Consensus 30 I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt-~a~ala~ 80 (212)
T 1tue_A 30 IVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSY-FGMSFIH 80 (212)
T ss_dssp HHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHH-HHHHHHH
T ss_pred HHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHH-HHHHHHH
Confidence 4444443332 23333 3444445544 359999999999993 3344444
No 373
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=28.96 E-value=17 Score=36.32 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=12.4
Q ss_pred CceEeeecCCCCcc
Q psy8712 40 GDVLMAAETGSGKT 53 (651)
Q Consensus 40 ~dvl~~a~TGsGKT 53 (651)
.=+++++++|||||
T Consensus 34 ~livl~G~sGsGKS 47 (287)
T 1gvn_B 34 TAFLLGGQPGSGKT 47 (287)
T ss_dssp EEEEEECCTTSCTH
T ss_pred eEEEEECCCCCCHH
Confidence 34889999999999
No 374
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=28.93 E-value=15 Score=34.35 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=12.9
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
|.=+++.+|+|||||
T Consensus 20 G~~~~i~G~~GsGKT 34 (220)
T 2cvh_A 20 GVLTQVYGPYASGKT 34 (220)
T ss_dssp TSEEEEECSTTSSHH
T ss_pred CEEEEEECCCCCCHH
Confidence 345789999999999
No 375
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=28.84 E-value=19 Score=34.41 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=10.2
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.|.=+.+.+|+|||||-
T Consensus 26 ~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTT 42 (231)
T ss_dssp CCCEEEEECSCC----C
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46667889999999993
No 376
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=28.75 E-value=17 Score=33.99 Aligned_cols=16 Identities=38% Similarity=0.210 Sum_probs=12.8
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.=+.+.+|+|||||.
T Consensus 6 ~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 6 PFVIGIAGGTASGKTT 21 (211)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred cEEEEEECCCCCCHHH
Confidence 3447789999999993
No 377
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=28.60 E-value=19 Score=36.71 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=14.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+++.+|+|+|||.
T Consensus 45 ~~~vli~G~~G~GKTt 60 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTA 60 (386)
T ss_dssp CCCEEEEECTTSSHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5689999999999993
No 378
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=28.54 E-value=18 Score=33.74 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=14.1
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.-+++.++.|||||
T Consensus 28 ~g~~i~l~G~~GsGKS 43 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKT 43 (200)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3667899999999999
No 379
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.48 E-value=16 Score=33.67 Aligned_cols=29 Identities=14% Similarity=0.446 Sum_probs=18.3
Q ss_pred CCcceEeeccch--hhhhccchHHHHHHHhc
Q psy8712 360 THCRFFVLDEAD--GLLKQGYGNLIDRMHKQ 388 (651)
Q Consensus 360 ~~l~~lViDEaD--~ll~~gf~~~i~~il~~ 388 (651)
.+.+++|+||++ ..++..+...+..++..
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 455789999965 33444455666666654
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.36 E-value=18 Score=34.73 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.3
Q ss_pred hcCCceEeeecCCCCcc
Q psy8712 37 LGGGDVLMAAETGSGKT 53 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT 53 (651)
-.|.=+++.+|+|||||
T Consensus 14 ~~G~ii~l~GpsGsGKS 30 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKS 30 (219)
T ss_dssp -CCCEEEEECCTTSCHH
T ss_pred CCCcEEEEECCCCCCHH
Confidence 45677889999999999
No 381
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.32 E-value=17 Score=37.83 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=0.0
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
.++.+|||+|||
T Consensus 28 ~vi~G~NGaGKT 39 (371)
T 3auy_A 28 VAIIGENGSGKS 39 (371)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
No 382
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=28.01 E-value=77 Score=34.24 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=34.9
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhh
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFK 308 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~ 308 (651)
.....+-+|++|+.+....... . ...+|||+|+..+|.|+++.++.|.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~-------~-~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER-------H-AGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH-------S-SSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCchHHHHHHHHHHHH-------h-CCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 3566777899998864433211 1 1247999999999999999998875
No 383
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=27.96 E-value=19 Score=38.47 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=21.1
Q ss_pred HHhHhcC----CceEeeecCCCCccceeehhhHHHH
Q psy8712 33 IPLILGG----GDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 33 ip~il~g----~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
+..+++| .=++++|++|+||| +|++-+...+
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT-~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKT-AFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHH-HHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHH-HHHHHHHHHH
Confidence 4555544 34788999999999 6665555443
No 384
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=27.82 E-value=17 Score=33.30 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.8
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
=+++.+|+|||||.
T Consensus 4 ii~l~G~~GaGKST 17 (189)
T 2bdt_A 4 LYIITGPAGVGKST 17 (189)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCcHHH
Confidence 36789999999993
No 385
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=27.80 E-value=21 Score=32.97 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCCcccccccccCCceeeeeccCccccccc-ccchhhhhccCcchhh
Q psy8712 186 GMHDVIGCLLDLDNMTVAFTKNGQHLGLAF-NISQQLKNSAFYPAVV 231 (651)
Q Consensus 186 ~~~d~ig~~~~~~~~~~~~~~ng~~~g~af-~~~~~~~~~~~~p~~~ 231 (651)
..||++|-+++ .+|.+.|..||.+.|+.+ ..|. .+++++-+.
T Consensus 107 ~~g~~l~f~v~-~~G~l~~~iNg~~~g~~~~~V~~---~~pLwavvD 149 (168)
T 2yue_A 107 EKDNILYYYVN-GAGDVIYGINNEEKGVILTGIDT---RSLLWTVID 149 (168)
T ss_dssp CSSCEEEEEEC-TTSEEEEEESSCEEEEEEECCCC---SSCCEEEEE
T ss_pred cCCCEEEEEEc-CCCEEEEEECCCccEEEEcCCCC---CCceEEEEE
Confidence 45899998887 788999999999999999 5773 344554444
No 386
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.75 E-value=1e+02 Score=25.66 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECch
Q psy8712 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346 (651)
Q Consensus 296 La~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~ 346 (651)
|+..+.+.+.+.+- .+.+. ..+-...... ...+|+++.||.
T Consensus 20 l~~kl~~~~~~~gi-----~~~i~-~~~~~~~~~~----~~~~D~Ii~t~~ 60 (109)
T 2l2q_A 20 LVQRIEKYAKSKNI-----NATIE-AIAETRLSEV----VDRFDVVLLAPQ 60 (109)
T ss_dssp HHHHHHHHHHHHTC-----SEEEE-EECSTTHHHH----TTTCSEEEECSC
T ss_pred HHHHHHHHHHHCCC-----CeEEE-EecHHHHHhh----cCCCCEEEECCc
Confidence 56677777766542 13322 2222222221 246899999985
No 387
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=27.36 E-value=17 Score=33.69 Aligned_cols=15 Identities=33% Similarity=0.745 Sum_probs=13.0
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.-+++.++.|||||-
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468999999999993
No 388
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.22 E-value=17 Score=35.30 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=24.0
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
..+-++|++||-=.-+|......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 35677999999888887666667777776664
No 389
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=27.06 E-value=19 Score=32.72 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.6
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.-+++.++.|||||.
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4568999999999993
No 390
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=27.01 E-value=19 Score=32.87 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.3
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+.-+++.++.|||||.
T Consensus 5 ~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT 20 (193)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3457899999999994
No 391
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=26.97 E-value=20 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.5
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.+.-+++.++.|||||.
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 9 KGINILITGTPGTGKTS 25 (184)
T ss_dssp SSCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 35679999999999993
No 392
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=26.86 E-value=31 Score=35.85 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=15.2
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.+.++++.++||||||.
T Consensus 34 ~~~~~~i~G~~G~GKs~ 50 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSF 50 (392)
T ss_dssp CCCCEEEECCTTSSHHH
T ss_pred ccCceEEEcCCCCCHHH
Confidence 56789999999999994
No 393
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.63 E-value=27 Score=37.54 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.6
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
..+++|+.+|+|+|||.
T Consensus 200 ~~~~~LL~G~pG~GKT~ 216 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTA 216 (468)
T ss_dssp SSCEEEEESCTTTTTHH
T ss_pred CCCCeEEECCCCCCHHH
Confidence 34689999999999993
No 394
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=26.61 E-value=11 Score=35.18 Aligned_cols=21 Identities=29% Similarity=0.078 Sum_probs=16.1
Q ss_pred HhHhcCCceEeeecCCCCccc
Q psy8712 34 PLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 34 p~il~g~dvl~~a~TGsGKT~ 54 (651)
|.+-.+.=+.+.+++|||||.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHH
T ss_pred ccCCCCeEEEEECCCCCCHHH
Confidence 444456668899999999993
No 395
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=26.57 E-value=20 Score=38.43 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=23.9
Q ss_pred CCcHHHHhhHHhHhcC----CceEeeecCCCCccceeehhhHHHH
Q psy8712 24 LPTDVQAEAIPLILGG----GDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g----~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
.||.+. .+..+++| .=++++|++|+||| +|++-+...+
T Consensus 186 i~tG~~--~LD~~~gGl~~G~liiI~G~pG~GKT-tl~l~ia~~~ 227 (454)
T 2r6a_A 186 IPTGFT--ELDRMTSGFQRSDLIIVAARPSVGKT-AFALNIAQNV 227 (454)
T ss_dssp BCCSCH--HHHHHHSSBCTTCEEEEECCTTSCHH-HHHHHHHHHH
T ss_pred CCCCcH--HHHhhcCCCCCCCEEEEECCCCCCHH-HHHHHHHHHH
Confidence 445443 35555543 45788899999999 5555554433
No 396
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.56 E-value=50 Score=33.39 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=23.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.|+++--..++.+.|...=... -....+++.+|+|+|||.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTt 51 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKT 51 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHH
Confidence 3555555666666665421000 012349999999999994
No 397
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.51 E-value=18 Score=41.91 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=32.0
Q ss_pred ccccCCCCHHHHHHHHHc-CCCCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEM-DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~-~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.|+++|...++.+.|.+. -|..-.|-+-+-. -+--.+-+|+.+|.|+|||+
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchH
Confidence 588888888988888763 3332222211110 01123579999999999993
No 398
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=26.50 E-value=18 Score=37.58 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=13.7
Q ss_pred CceEeeecCCCCcccee
Q psy8712 40 GDVLMAAETGSGKTGAF 56 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af 56 (651)
+-.++.+|||||||-.|
T Consensus 24 g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36789999999999433
No 399
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=26.47 E-value=21 Score=38.27 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCcHHHHhhHHhHhcC----CceEeeecCCCCccceeehhhHHHH
Q psy8712 24 LPTDVQAEAIPLILGG----GDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g----~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
.||.+. .+..+++| .=++++|++|+||| +|++-+...+
T Consensus 180 i~TG~~--~LD~~lgGl~~G~liiIaG~pG~GKT-tlal~ia~~~ 221 (444)
T 3bgw_A 180 VPSGFT--ELDRMTYGYKRRNFVLIAARPSMGKT-AFALKQAKNM 221 (444)
T ss_dssp BCCSCH--HHHHHHSSBCSSCEEEEEECSSSSHH-HHHHHHHHHH
T ss_pred cCCCcH--HHHhhcCCCCCCcEEEEEeCCCCChH-HHHHHHHHHH
Confidence 345443 35556554 34888999999999 5655555433
No 400
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=26.44 E-value=21 Score=36.69 Aligned_cols=16 Identities=38% Similarity=0.248 Sum_probs=13.8
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
++.+++.+|+|+|||.
T Consensus 45 ~~~vll~G~~G~GKT~ 60 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTF 60 (384)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CCcEEEECCCCCCHHH
Confidence 3569999999999994
No 401
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=26.31 E-value=17 Score=34.56 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=13.5
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.-+++.+|+|+|||.
T Consensus 24 G~~~~i~G~~GsGKTt 39 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQ 39 (243)
T ss_dssp TSEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCcHHH
Confidence 4568899999999993
No 402
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=26.28 E-value=19 Score=36.88 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.9
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
.+++.+|+|+|||.
T Consensus 46 ~~li~G~~G~GKTt 59 (389)
T 1fnn_A 46 RATLLGRPGTGKTV 59 (389)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 69999999999993
No 403
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=26.14 E-value=16 Score=34.48 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=12.9
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
|.=+.+.+|+|||||
T Consensus 25 G~~~~l~G~nGsGKS 39 (231)
T 4a74_A 25 QAITEVFGEFGSGKT 39 (231)
T ss_dssp SEEEEEEESTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 345888999999999
No 404
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=25.96 E-value=17 Score=32.71 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.6
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.-+++.++.|||||.
T Consensus 8 g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSA 23 (175)
T ss_dssp SEEEEEECSTTSCHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4568899999999994
No 405
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=25.89 E-value=54 Score=35.28 Aligned_cols=76 Identities=21% Similarity=0.120 Sum_probs=60.0
Q ss_pred cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 20 MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 20 ~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
++...|||+|.++||.++.|+|++++||||||||++|++|+++.+... ......++++++|+++|..|..+..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhC-------cccCCCeEEEEeCCHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999877541 1112457899999999998887766
Q ss_pred ccc
Q psy8712 100 MAI 102 (651)
Q Consensus 100 ~~~ 102 (651)
..+
T Consensus 76 ~~~ 78 (556)
T 4a2p_A 76 KHH 78 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 406
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=25.64 E-value=20 Score=32.66 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.-+++.+++|||||.
T Consensus 4 ~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 4 LVVFVLGGPGAGKGT 18 (196)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 347899999999993
No 407
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=25.56 E-value=21 Score=32.46 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=11.3
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++.++.|||||
T Consensus 4 I~i~G~~GsGKs 15 (194)
T 1nks_A 4 GIVTGIPGVGKS 15 (194)
T ss_dssp EEEEECTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 688999999999
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=25.40 E-value=24 Score=34.66 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.9
Q ss_pred hcCCceEeeecCCCCccc
Q psy8712 37 LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 37 l~g~dvl~~a~TGsGKT~ 54 (651)
+.|.-+++.++.|||||.
T Consensus 46 l~g~~i~l~G~~GsGKST 63 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTT 63 (250)
T ss_dssp HTTCCEEEECSTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 348999999999999993
No 409
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=25.15 E-value=1.1e+02 Score=33.37 Aligned_cols=76 Identities=20% Similarity=0.123 Sum_probs=44.1
Q ss_pred CCcHHHHhhHHhHhc----C-CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccc-c
Q psy8712 24 LPTDVQAEAIPLILG----G-GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDR-D 97 (651)
Q Consensus 24 ~pt~iQ~~aip~il~----g-~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~-~ 97 (651)
.|+|+|.+||+.++. | ++++++++||||||+++ ++++..+..... .........++++++|+.+|..|.. .
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~--~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARW--NRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTC--CSSCSSSCCCEEEEEC-----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhccc--ccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 699999999999885 4 67999999999999995 455544443100 0000113467899999999999887 5
Q ss_pred ccccc
Q psy8712 98 TAMAI 102 (651)
Q Consensus 98 ~~~~~ 102 (651)
.....
T Consensus 255 ~~~~~ 259 (590)
T 3h1t_A 255 TFTPF 259 (590)
T ss_dssp CCTTT
T ss_pred HHHhc
Confidence 44433
No 410
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=25.14 E-value=1e+02 Score=32.77 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=18.1
Q ss_pred CCCCCeEEEecCCCCceeeeeccc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
++..-+++.+..|+|||..+...+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 344557888999999999876544
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=24.91 E-value=24 Score=36.44 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=20.4
Q ss_pred hHHhHhcC----CceEeeecCCCCccceeehhhHHH
Q psy8712 32 AIPLILGG----GDVLMAAETGSGKTGAFCLPIIQI 63 (651)
Q Consensus 32 aip~il~g----~dvl~~a~TGsGKT~af~lp~l~~ 63 (651)
.+..+++| .=++++|++|+||| +|++-+...
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKT-t~al~ia~~ 69 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKT-SLMMNMVLS 69 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHH-HHHHHHHHH
Confidence 34445544 34788999999999 555544443
No 412
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.69 E-value=9.1 Score=41.83 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=27.1
Q ss_pred ccccCCCCHHHHHHHHHcC--CCCCcHHHHhhHHhHh--cCCceEeeecCCCCccc
Q psy8712 3 AFEEMGVLPEIGKAVEEMD--WLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~--~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT~ 54 (651)
.|+++.-..+..+.+.++- +..|. .+..+- -.+.|++.+|+|+|||.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTt 79 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTH 79 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHH
Confidence 5788877777777766531 11111 010000 01349999999999993
No 413
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=24.59 E-value=16 Score=34.12 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.8
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|+-|++.++.|+|||
T Consensus 15 ~G~gvli~G~SGaGKS 30 (181)
T 3tqf_A 15 DKMGVLITGEANIGKS 30 (181)
T ss_dssp TTEEEEEEESSSSSHH
T ss_pred CCEEEEEEcCCCCCHH
Confidence 5778999999999999
No 414
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.44 E-value=15 Score=42.49 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=21.1
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.+.++|.+++++||+|||.++.+++
T Consensus 386 ~~~~~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 386 SEKPMNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp SSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred ccCCCcEEEEcCCCCCHHHHHHHHH
Confidence 4566899999999999999987654
No 415
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=24.43 E-value=22 Score=33.72 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.4
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+.-+++.+++|||||.
T Consensus 7 ~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGT 22 (227)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3458999999999993
No 416
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=24.42 E-value=76 Score=33.89 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=18.2
Q ss_pred CCCCeEEEecCCCCceeeeeccc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+|.-++..+..|+|||+.+...+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45667888999999999876554
No 417
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=24.34 E-value=22 Score=32.35 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.4
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.-+++.++.|||||.
T Consensus 4 g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGT 19 (186)
T ss_dssp EEEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4468899999999993
No 418
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=24.34 E-value=26 Score=37.52 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=14.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
.+.+++.+|+|+|||.
T Consensus 50 ~~~iLl~GppGtGKT~ 65 (444)
T 1g41_A 50 PKNILMIGPTGVGKTE 65 (444)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CceEEEEcCCCCCHHH
Confidence 4689999999999994
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=24.31 E-value=20 Score=34.71 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=18.6
Q ss_pred CCcceEeeccchhhhhccchHHHHHHH
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMH 386 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il 386 (651)
.+-+++++||-=.-+|......+..++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 455789999988777765555555555
No 420
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.25 E-value=82 Score=29.65 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCcceEeeccchhhhhccc--hHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 360 THCRFFVLDEADGLLKQGY--GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf--~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
.+.++||+||+-..+..++ .+++..++...|. +.-+|+.+--.|+ .+.+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~------~~~vIlTGr~ap~-~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPG------HQTVIITGRGCHR-DILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT------TCEEEEECSSCCH-HHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC------CCEEEEECCCCcH-HHHHhCc
Confidence 5678999999987766554 3456667776665 3555555555554 6666554
No 421
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=24.15 E-value=23 Score=36.13 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=13.4
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
..+++.+|+|+|||.
T Consensus 52 ~~~ll~Gp~G~GKTT 66 (334)
T 1in4_A 52 DHVLLAGPPGLGKTT 66 (334)
T ss_dssp CCEEEESSTTSSHHH
T ss_pred CeEEEECCCCCcHHH
Confidence 579999999999993
No 422
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=24.02 E-value=32 Score=39.28 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=19.2
Q ss_pred hHHhHhcCCc--eEeeecCCCCcccee
Q psy8712 32 AIPLILGGGD--VLMAAETGSGKTGAF 56 (651)
Q Consensus 32 aip~il~g~d--vl~~a~TGsGKT~af 56 (651)
.|..++.|.+ |++-+.||||||.+-
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788876 555689999999664
No 423
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=24.01 E-value=23 Score=32.43 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.7
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+.-+++.++.|||||.
T Consensus 12 ~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGT 27 (199)
T ss_dssp SCEEEEEECTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4568999999999993
No 424
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=23.87 E-value=22 Score=46.78 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.8
Q ss_pred HhcCCceEeeecCCCCccc
Q psy8712 36 ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT~ 54 (651)
+..|+.||+.+|||+|||.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~ 1282 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTM 1282 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHH
T ss_pred HHCCCeEEEECCCCCCHHH
Confidence 4478999999999999994
No 425
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.84 E-value=52 Score=33.28 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=0.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCc--eEeeecCCCCcc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGD--VLMAAETGSGKT 53 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~d--vl~~a~TGsGKT 53 (651)
..|++.--.+++++.|... +..|+- +++.+|+|+|||
T Consensus 22 ~~~~~~~g~~~~~~~L~~~---------------i~~g~~~~~ll~Gp~G~GKT 60 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKF---------------VDEGKLPHLLFYGPPGTGKT 60 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHH---------------HHTTCCCCEEEECSSSSSHH
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCceEEEECCCCCCHH
No 426
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.58 E-value=24 Score=32.01 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=12.2
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++.++.|||||.
T Consensus 8 ~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 8 VVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999994
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.54 E-value=23 Score=35.25 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=13.5
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.=+++.|++|+|||
T Consensus 34 ~G~~~~i~G~~G~GKT 49 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKS 49 (296)
T ss_dssp TTCEEEEEESTTSSHH
T ss_pred CCeEEEEEeCCCCCHH
Confidence 3456789999999999
No 428
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=23.37 E-value=23 Score=33.49 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=12.1
Q ss_pred eEeeecCCCCccce
Q psy8712 42 VLMAAETGSGKTGA 55 (651)
Q Consensus 42 vl~~a~TGsGKT~a 55 (651)
.++.++.|||||..
T Consensus 8 ~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 8 CLITGTPGSGKTLK 21 (199)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 57899999999963
No 429
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=23.34 E-value=22 Score=34.08 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.8
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
..+-+++++||--.-+|......+..+++.+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 45678999999988787666666777766653
No 430
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=23.24 E-value=24 Score=32.17 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.4
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.+.-+++.++.|||||.
T Consensus 8 ~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp TSCEEEEEECTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45678999999999993
No 431
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=23.20 E-value=25 Score=37.49 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.7
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
+..+++.+|+|+|||
T Consensus 130 ~~~lll~Gp~G~GKT 144 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKT 144 (440)
T ss_dssp SCCEEEECSSSSSHH
T ss_pred CCeEEEECCCCCCHH
Confidence 358999999999999
No 432
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=23.19 E-value=23 Score=33.30 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=12.5
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.-+.+.+++|||||.
T Consensus 6 ~~i~i~G~~GsGKST 20 (227)
T 1cke_A 6 PVITIDGPSGAGKGT 20 (227)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 347889999999993
No 433
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=23.15 E-value=23 Score=33.08 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=11.1
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++.++.|||||
T Consensus 3 I~l~G~~GsGKs 14 (216)
T 3fb4_A 3 IVLMGLPGAGKG 14 (216)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 688999999999
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.09 E-value=23 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.2
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++.++.|||||.
T Consensus 4 ~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 4 PIFMVGARGCGMTT 17 (173)
T ss_dssp CEEEESCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 47899999999993
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.03 E-value=24 Score=33.77 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=25.3
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
+.+-+++++||--.-+|......+.+++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 45678999999998888777777777777664
No 436
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.02 E-value=22 Score=34.26 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=18.5
Q ss_pred CCcceEeeccchhhhhccchHHHHHH
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRM 385 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~i 385 (651)
.+-+++++||--.-+|......+.++
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHH
Confidence 56679999998877776555555553
No 437
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.94 E-value=82 Score=37.04 Aligned_cols=78 Identities=19% Similarity=0.075 Sum_probs=60.0
Q ss_pred HHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccc
Q psy8712 18 EEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRD 97 (651)
Q Consensus 18 ~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 97 (651)
.-.|+..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+.. .......++++++|+.+|..|...
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~-------~~~~~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQN-------MPAGRKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTT-------CCSSCCCCEEEECSSHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHh-------ccccCCCeEEEEeCCHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999886543 111114578999999999988877
Q ss_pred ccccc
Q psy8712 98 TAMAI 102 (651)
Q Consensus 98 ~~~~~ 102 (651)
.....
T Consensus 315 ~~~~~ 319 (936)
T 4a2w_A 315 VFKHH 319 (936)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 438
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=22.91 E-value=29 Score=36.13 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=23.1
Q ss_pred hHHhHhc-C-----CceEeeecCCCCccceeehhhHHHH
Q psy8712 32 AIPLILG-G-----GDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 32 aip~il~-g-----~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
.+..+|+ | .-+++.+++||||| +|++.++..+
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKT-tlal~la~~~ 98 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKT-TLALAIVAQA 98 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHH-HHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChH-HHHHHHHHHH
Confidence 4566676 3 46888999999999 6666665544
No 439
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.89 E-value=23 Score=37.90 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=13.2
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
..+++.+|+|+|||.
T Consensus 51 ~~vLL~GppGtGKTt 65 (447)
T 3pvs_A 51 HSMILWGPPGTGKTT 65 (447)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCcHHH
Confidence 369999999999993
No 440
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=22.86 E-value=24 Score=34.03 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=13.2
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
+.-+++.++.|||||
T Consensus 27 ~~~i~l~G~~GsGKS 41 (246)
T 2bbw_A 27 LLRAVILGPPGSGKG 41 (246)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 456899999999999
No 441
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=22.83 E-value=35 Score=37.97 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.7
Q ss_pred HhHhcCCceEeeecCCCCccc
Q psy8712 34 PLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 34 p~il~g~dvl~~a~TGsGKT~ 54 (651)
..+..|..+++.+|+|+|||.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTt 75 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSM 75 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHH
T ss_pred ccccCCCEEEEEeCCCCCHHH
Confidence 345578999999999999993
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=22.74 E-value=23 Score=34.96 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.9
Q ss_pred HhcCCceEeeecCCCCccc
Q psy8712 36 ILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT~ 54 (651)
+..|.=+++.+|+|||||.
T Consensus 27 l~~G~i~~i~G~~GsGKTt 45 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSM 45 (279)
T ss_dssp EETTSEEEEEESTTSSHHH
T ss_pred ccCCCEEEEEcCCCCCHHH
Confidence 4467788999999999993
No 443
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=22.72 E-value=17 Score=46.44 Aligned_cols=41 Identities=5% Similarity=-0.085 Sum_probs=29.9
Q ss_pred CCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCC
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPS 293 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PT 293 (651)
.+++.+++..++.|+|||..+...++... ..+.+++++...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~-----~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEEEcc
Confidence 56888999999999999999866553221 235567777655
No 444
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=22.66 E-value=24 Score=32.36 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=11.2
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++.++.|||||
T Consensus 3 I~i~G~~GsGKs 14 (205)
T 2jaq_A 3 IAIFGTVGAGKS 14 (205)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCccCHH
Confidence 688999999999
No 445
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=22.66 E-value=29 Score=38.47 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=15.5
Q ss_pred CCceEeeecCCCCccceee
Q psy8712 39 GGDVLMAAETGSGKTGAFC 57 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~af~ 57 (651)
...+++++.||||||.+.-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp SCCEEEECCTTSSHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHH
Confidence 3689999999999995443
No 446
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=22.63 E-value=34 Score=35.45 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=22.4
Q ss_pred hhHHhHhc-C-----CceEeeecCCCCccceeehhhHHH
Q psy8712 31 EAIPLILG-G-----GDVLMAAETGSGKTGAFCLPIIQI 63 (651)
Q Consensus 31 ~aip~il~-g-----~dvl~~a~TGsGKT~af~lp~l~~ 63 (651)
..+..+|+ | .=+++.+|+||||| .+++.++..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKS-TLal~la~~ 84 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKT-TLALHAIAE 84 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHH-HHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHH-HHHHHHHHH
Confidence 34666777 4 35888999999999 455555543
No 447
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=22.62 E-value=35 Score=34.74 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.9
Q ss_pred cHHHHhhHHhHh----cCC---ceEeeecCCCCcc
Q psy8712 26 TDVQAEAIPLIL----GGG---DVLMAAETGSGKT 53 (651)
Q Consensus 26 t~iQ~~aip~il----~g~---dvl~~a~TGsGKT 53 (651)
.|.|.+++..+. .|+ -+++.+|.|+|||
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt 38 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDD 38 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHH
Confidence 577777765553 343 4899999999999
No 448
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=22.42 E-value=23 Score=32.92 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.9
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.-+.+.++.|||||
T Consensus 24 ~g~~i~l~G~sGsGKS 39 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKS 39 (200)
T ss_dssp CCEEEEEECSTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 4667888999999999
No 449
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=22.40 E-value=26 Score=32.43 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.6
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+.+.++.|||||.
T Consensus 4 i~i~G~~GsGKST 16 (204)
T 2if2_A 4 IGLTGNIGCGKST 16 (204)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 6889999999993
No 450
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=22.25 E-value=25 Score=31.71 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.4
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
.+++.++.|||||-
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 58899999999993
No 451
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.23 E-value=24 Score=34.80 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
.+-+++++||--.-+|......+..++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 4557899999888777666666777776653
No 452
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=22.12 E-value=26 Score=32.29 Aligned_cols=13 Identities=31% Similarity=0.192 Sum_probs=11.3
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+.+++++|||||.
T Consensus 7 i~i~G~sGsGKTT 19 (169)
T 1xjc_A 7 WQVVGYKHSGKTT 19 (169)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999994
No 453
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=22.08 E-value=25 Score=35.69 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=14.2
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.=+.+.+|+|||||
T Consensus 125 ~Ge~vaIvGpsGsGKS 140 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKS 140 (305)
T ss_dssp TCSEEEEECSSSSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 5677889999999999
No 454
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.02 E-value=26 Score=31.84 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=12.3
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++.++.|||||.
T Consensus 4 ~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 4 KAVLVGLPGSGKST 17 (184)
T ss_dssp SEEEECSTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 48899999999993
No 455
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=21.95 E-value=39 Score=31.05 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=29.3
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
+...++++||.+.-+|......+..+++.+.. ..|+++.|
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~------~~~~ivit 124 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSK------ESQFIVIT 124 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT------TSEEEEEC
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhcc------CCEEEEEE
Confidence 34579999999998887666667777766544 46777775
No 456
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=21.89 E-value=20 Score=37.58 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=14.3
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.-+++.+|+|||||
T Consensus 168 ~~~~i~l~G~~GsGKS 183 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKT 183 (377)
T ss_dssp TCCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678899999999999
No 457
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.83 E-value=26 Score=32.82 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=11.1
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
+++.++.|||||
T Consensus 3 I~l~G~~GsGKs 14 (216)
T 3dl0_A 3 LVLMGLPGAGKG 14 (216)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 688999999999
No 458
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=21.67 E-value=26 Score=35.18 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.8
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
=|.+++++|||||-
T Consensus 33 ii~I~G~sGsGKST 46 (290)
T 1odf_A 33 FIFFSGPQGSGKSF 46 (290)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999993
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=21.65 E-value=24 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=23.1
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
.+-+++++||-=.-+|......+..+++.+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 5667899999887777666667777776653
No 460
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.50 E-value=29 Score=46.27 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=16.2
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..|+.||+++|||+|||
T Consensus 1301 l~~~~pvLL~GptGtGKT 1318 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKT 1318 (3245)
T ss_dssp HHTTCCCEEESSTTSSHH
T ss_pred HHCCCcEEEECCCCCCHH
Confidence 347889999999999999
No 461
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=21.42 E-value=25 Score=34.37 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=22.8
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQI 389 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~l 389 (651)
+.+-+++++||--.-+|......+..++..+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3566789999988877766666677766665
No 462
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=21.42 E-value=28 Score=32.41 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=12.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.=+.+.+++|||||.
T Consensus 23 ~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTT 37 (201)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 347889999999993
No 463
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=21.31 E-value=15 Score=33.88 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=11.3
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+.+.+++|||||.
T Consensus 5 v~IvG~SGsGKST 17 (171)
T 2f1r_A 5 LSIVGTSDSGKTT 17 (171)
T ss_dssp EEEEESCHHHHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999993
No 464
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.30 E-value=28 Score=31.96 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.6
Q ss_pred ceEeeecCCCCcc
Q psy8712 41 DVLMAAETGSGKT 53 (651)
Q Consensus 41 dvl~~a~TGsGKT 53 (651)
-+.+.+++|||||
T Consensus 10 ~I~i~G~~GsGKS 22 (203)
T 1uf9_A 10 IIGITGNIGSGKS 22 (203)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 3788999999999
No 465
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=21.27 E-value=27 Score=32.17 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=11.4
Q ss_pred ceEeeecCCCCcc
Q psy8712 41 DVLMAAETGSGKT 53 (651)
Q Consensus 41 dvl~~a~TGsGKT 53 (651)
=+++.+++|||||
T Consensus 8 ~i~i~G~sGsGKT 20 (174)
T 1np6_A 8 LLAFAAWSGTGKT 20 (174)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEEeCCCCCHH
Confidence 3678999999999
No 466
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=21.26 E-value=30 Score=32.26 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=20.9
Q ss_pred cCCcceEeeccchhh--hhccchHHHHHHHhc
Q psy8712 359 LTHCRFFVLDEADGL--LKQGYGNLIDRMHKQ 388 (651)
Q Consensus 359 l~~l~~lViDEaD~l--l~~gf~~~i~~il~~ 388 (651)
..+.++||+||++.+ .+..|...+.++++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 456779999998877 344566667666653
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.24 E-value=22 Score=34.61 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQI 389 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~l 389 (651)
.+-+++++||--.-+|......+..++..+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 355689999998888876666777776665
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=21.22 E-value=27 Score=32.81 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.8
Q ss_pred CceEeeecCCCCccce
Q psy8712 40 GDVLMAAETGSGKTGA 55 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~a 55 (651)
+=.++.+|+|||||-.
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 4467889999999943
No 469
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=21.20 E-value=28 Score=32.79 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.0
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
+.-+++.++.|||||
T Consensus 5 ~~~I~l~G~~GsGKs 19 (222)
T 1zak_A 5 PLKVMISGAPASGKG 19 (222)
T ss_dssp SCCEEEEESTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 346899999999999
No 470
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=21.18 E-value=77 Score=36.41 Aligned_cols=77 Identities=19% Similarity=0.091 Sum_probs=61.1
Q ss_pred HcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeecccccc
Q psy8712 19 EMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDT 98 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~ 98 (651)
.+|+..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+... ......++++++|+++|..|..+.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc-------cccCCCeEEEEeCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999877541 111245789999999999888776
Q ss_pred cccc
Q psy8712 99 AMAI 102 (651)
Q Consensus 99 ~~~~ 102 (651)
....
T Consensus 316 ~~~~ 319 (797)
T 4a2q_A 316 FKHH 319 (797)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 471
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=21.18 E-value=29 Score=31.32 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=9.5
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
+.-+++.++.|||||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 5 SPIIWINGPFGVGKTH 20 (183)
T ss_dssp CCEEEEECCC----CH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4558899999999993
No 472
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.08 E-value=32 Score=34.78 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=0.0
Q ss_pred eEeeecCCCCcc
Q psy8712 42 VLMAAETGSGKT 53 (651)
Q Consensus 42 vl~~a~TGsGKT 53 (651)
.++.+|||||||
T Consensus 27 ~~i~G~NGsGKS 38 (322)
T 1e69_A 27 TAIVGPNGSGKS 38 (322)
T ss_dssp EEEECCTTTCST
T ss_pred EEEECCCCCcHH
No 473
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=21.04 E-value=28 Score=32.21 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=12.2
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++.++.|||||.
T Consensus 17 ~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 17 VIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999993
No 474
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.01 E-value=28 Score=32.24 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.9
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.-+++.++.|||||.
T Consensus 21 ~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGT 35 (201)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 458899999999993
No 475
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.84 E-value=25 Score=34.73 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=21.3
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
+-++|++||-=.-+|......+..+++.+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 567899999877666555666666666654
No 476
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=20.82 E-value=25 Score=35.00 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=22.3
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
..+-++|++||-=.-+|......+..+++.+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 35667899999877777655566666666653
No 477
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=20.75 E-value=30 Score=34.75 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|+-+++.+++|+|||.
T Consensus 105 g~vi~lvG~~GsGKTT 120 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTT 120 (296)
T ss_dssp SSEEEEEESTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 5568889999999994
No 478
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=20.73 E-value=28 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.8
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.=+.+.+|+|||||-
T Consensus 100 g~vi~lvG~nGsGKTT 115 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTT 115 (302)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 3346789999999994
No 479
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=20.71 E-value=1.6e+02 Score=30.48 Aligned_cols=24 Identities=0% Similarity=-0.281 Sum_probs=18.3
Q ss_pred CCCCCeEEEecCCCCceeeeeccc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
++..-+++.+..|+|||..+...+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHH
Confidence 455568889999999999875544
No 480
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=20.70 E-value=59 Score=32.45 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.1
Q ss_pred ceEeeecCCCCccc
Q psy8712 41 DVLMAAETGSGKTG 54 (651)
Q Consensus 41 dvl~~a~TGsGKT~ 54 (651)
-+++.+|+|+|||.
T Consensus 50 ~~L~~G~~G~GKT~ 63 (324)
T 3u61_B 50 IILHSPSPGTGKTT 63 (324)
T ss_dssp EEEECSSTTSSHHH
T ss_pred EEEeeCcCCCCHHH
Confidence 35777889999993
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.67 E-value=26 Score=33.97 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=23.8
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
..+-+++++||--.-+|......+..+++.+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 35667999999988888766667777776653
No 482
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=20.59 E-value=27 Score=34.45 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=23.3
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
..+-+++++||-=.-+|......+..+++.+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35667999999888777666666777766653
No 483
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=20.54 E-value=28 Score=35.58 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.4
Q ss_pred ceEeeecCCCCccce
Q psy8712 41 DVLMAAETGSGKTGA 55 (651)
Q Consensus 41 dvl~~a~TGsGKT~a 55 (651)
=.++.+|+|||||..
T Consensus 25 ~~~i~G~NGsGKS~l 39 (339)
T 3qkt_A 25 INLIIGQNGSGKSSL 39 (339)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999953
No 484
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=20.50 E-value=24 Score=31.91 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=12.9
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.|.=+.+.+|.|+|||
T Consensus 32 ~Ge~v~L~G~nGaGKT 47 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKT 47 (158)
T ss_dssp SCEEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3445678899999999
No 485
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=20.48 E-value=28 Score=30.89 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=11.6
Q ss_pred eEeeecCCCCccc
Q psy8712 42 VLMAAETGSGKTG 54 (651)
Q Consensus 42 vl~~a~TGsGKT~ 54 (651)
+++.++.|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (168)
T 2pt5_A 3 IYLIGFMCSGKST 15 (168)
T ss_dssp EEEESCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999993
No 486
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.40 E-value=30 Score=34.98 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=13.2
Q ss_pred CCceEeeecCCCCccc
Q psy8712 39 GGDVLMAAETGSGKTG 54 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~ 54 (651)
|.=+.+.+|+|||||-
T Consensus 102 g~vi~lvG~nGsGKTT 117 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT 117 (304)
T ss_dssp SSEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCcHHH
Confidence 4567789999999994
No 487
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=20.35 E-value=29 Score=32.03 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.9
Q ss_pred CCceEeeecCCCCcc
Q psy8712 39 GGDVLMAAETGSGKT 53 (651)
Q Consensus 39 g~dvl~~a~TGsGKT 53 (651)
|.=+++.++.|||||
T Consensus 4 ~~~I~i~G~~GsGKs 18 (213)
T 2plr_A 4 GVLIAFEGIDGSGKS 18 (213)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred CeEEEEEcCCCCCHH
Confidence 445889999999999
No 488
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=20.06 E-value=31 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.9
Q ss_pred cCCceEeeecCCCCcc
Q psy8712 38 GGGDVLMAAETGSGKT 53 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT 53 (651)
.+..+++.++.|||||
T Consensus 15 ~~~~I~l~G~~GsGKs 30 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKG 30 (233)
T ss_dssp CCCEEEEECCTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3467999999999999
Done!