BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>psy8712
MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
IQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGC
RANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRFGFGFGGTGKKSNNKQFDN
YGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN
FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQT
FNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLT
HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL
MYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISG
LPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNT
QLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFD
GKVVYGQKRVNMGSSYENHVTQMEPSVNKLSKLESKAQLIYLKHHQAKQRA
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with Ddx1 Ddx1 Ddx1 Dead-box-1	protein from Drosophila melanogaster	6.3e-225
BLAST match view associations BLAST with DDX1 DDX1 DDX1 ATP-dependent RNA helicase DDX1	protein from Homo sapiens	6.1e-183
BLAST match view associations BLAST with DDX1 DDX1 DDX1 ATP-dependent RNA helicase DDX1	protein from Pongo abelii	6.1e-183
BLAST match view associations BLAST with Ddx1 Ddx1 Ddx1 DEAD (Asp-Glu-Ala-Asp) box helicase 1	gene from Rattus norvegicus	1.3e-182
BLAST match view associations BLAST with DDX1 DDX1 DDX1 ATP-dependent RNA helicase DDX1	protein from Macaca fascicularis	1.6e-182
BLAST match view associations BLAST with DDX1 DDX1 DDX1 ATP-dependent RNA helicase DDX1	protein from Bos taurus	4.3e-182
BLAST match view associations BLAST with Ddx1 Ddx1 Ddx1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein from Mus musculus	1.8e-181
BLAST match view associations BLAST with ddx1 ddx1 ddx1 ATP-dependent RNA helicase DDX1	protein from Xenopus laevis	3.8e-181
BLAST match view associations BLAST with DDX1 DDX1 DDX1 Uncharacterized protein	protein from Canis lupus familiaris	4.9e-181
BLAST match view associations BLAST with DDX1 DDX1 DDX1 ATP-dependent RNA helicase DDX1	protein from Gallus gallus	1.6e-180
BLAST match view associations BLAST with ddx1 ddx1 ddx1 ATP-dependent RNA helicase DDX1	protein from Xenopus (Silurana) tropicalis	7.1e-180
BLAST match view associations BLAST with DDX1 DDX1 DDX1 ATP-dependent RNA helicase DDX1	protein from Gallus gallus	9.1e-180
BLAST match view associations BLAST with DDX1 DDX1 DDX1 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-178
BLAST match view associations BLAST with ddx1 ddx1 ddx1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	gene_product from Danio rerio	5.7e-178
BLAST match view associations BLAST with F1SCS1 F1SCS1 F1SCS1 Uncharacterized protein	protein from Sus scrofa	1.2e-164
BLAST match view associations BLAST with Y55F3BR.1 Y55F3BR.1 Y55F3BR.1	gene from Caenorhabditis elegans	6.3e-127
BLAST match view associations BLAST with ddx1 ddx1 ddx1 SPla/RYanodine receptor SPRY domain-containing protein	gene from Dictyostelium discoideum	4.0e-116
BLAST match view associations BLAST with I3LGP0 I3LGP0 I3LGP0 Uncharacterized protein	protein from Sus scrofa	1.4e-93
BLAST match view associations BLAST with Ddx1 Ddx1 Ddx1 ATP-dependent RNA helicase Ddx1	protein from Drosophila virilis	5.5e-92
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	8.9e-40
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	8.9e-40
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	5.5e-38
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	5.5e-38
BLAST match view associations BLAST with F20A1.9 F20A1.9 F20A1.9	gene from Caenorhabditis elegans	2.7e-36
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	3.1e-35
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.0e-35
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.0e-35
BLAST match view associations BLAST with VC_A0804 VC_A0804 VC_A0804 ATP-dependent RNA helicase DeaD	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.5e-34
BLAST match view associations BLAST with VC_A0804 VC_A0804 VC_A0804 ATP-dependent RNA helicase DeaD	protein from Vibrio cholerae O1 biovar El Tor	1.5e-34
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Geobacillus kaustophilus HTA426	3.6e-34
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	1.1e-33
BLAST match view associations BLAST with CPS_3401 CPS_3401 CPS_3401 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	2.6e-33
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	7.5e-33
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	7.8e-33
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.4e-32
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	1.4e-32
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.5e-32
BLAST match view associations BLAST with SO_1501 SO_1501 SO_1501 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	4.9e-32
BLAST match view associations BLAST with SO_1501 SO_1501 SO_1501 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	4.9e-32
BLAST match view associations BLAST with HNE_0695 HNE_0695 HNE_0695 Putative ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	8.0e-32
BLAST match view associations BLAST with GSU_0491 GSU_0491 GSU_0491 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	8.4e-32
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.8e-30
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	2.6e-30
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	3.6e-30
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	3.6e-30
BLAST match view associations BLAST with deaD deaD deaD ATP-dependent RNA helicase DeaD	protein from Mycobacterium tuberculosis	3.8e-30
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	7.0e-30
BLAST match view associations BLAST with tifA tifA tifA eukaryotic translation initiation factor 4A	gene from Dictyostelium discoideum	1.4e-29
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	1.4e-29
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	1.4e-29
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 10987	4.6e-29
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis str. Al Hakam	4.8e-29
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus E33L	4.8e-29
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis serovar konkukian str. 97-27	4.8e-29
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus anthracis	4.8e-29
BLAST match view associations BLAST with BA_0247 BA_0247 BA_0247 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	4.8e-29
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 14579	5.0e-29
BLAST match view associations BLAST with CPS_1590 CPS_1590 CPS_1590 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.2e-29
BLAST match view associations BLAST with VC1407 VC1407 VC1407 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	7.2e-29
BLAST match view associations BLAST with VC_1407 VC_1407 VC_1407 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	7.2e-29
BLAST match view associations BLAST with CPS_1418 CPS_1418 CPS_1418 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	7.5e-29
BLAST match view associations BLAST with CPS_2658 CPS_2658 CPS_2658 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	8.1e-29
BLAST match view associations BLAST with BAS5307 BAS5307 BAS5307 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis	8.3e-29
BLAST match view associations BLAST with BA_5703 BA_5703 BA_5703 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	8.3e-29
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 Putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	8.8e-29
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	8.8e-29
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	8.8e-29
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	8.8e-29
BLAST match view associations BLAST with eIF-4a eIF-4a eIF-4a Eukaryotic initiation factor 4a	protein from Drosophila melanogaster	1.5e-28
BLAST match view associations BLAST with DDB_G0292108 DDB_G0292108 DDB_G0292108 DEAD-box ATP-dependent RNA helicase	gene from Dictyostelium discoideum	2.3e-28
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus subtilis subsp. subtilis str. 168	5.0e-28
BLAST match view associations BLAST with BAS2301 BAS2301 BAS2301 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis	6.1e-28
BLAST match view associations BLAST with BA_2475 BA_2475 BA_2475 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	6.1e-28
BLAST match view associations BLAST with deaD deaD deaD DeaD, DEAD-box RNA helicase	protein from Escherichia coli K-12	6.2e-28
BLAST match view associations BLAST with PFE0925c PFE0925c PFE0925c snrnp protein, putative	gene from Plasmodium falciparum	7.6e-28
BLAST match view associations BLAST with PFE0925c PFE0925c PFE0925c Snrnp protein, putative	protein from Plasmodium falciparum 3D7	7.6e-28
BLAST match view associations BLAST with cgh-1 cgh-1 cgh-1	gene from Caenorhabditis elegans	1.1e-27
BLAST match view associations BLAST with cgh-1 cgh-1 cgh-1 ATP-dependent RNA helicase cgh-1	protein from Caenorhabditis elegans	1.1e-27
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	1.2e-27
BLAST match view associations BLAST with bel bel bel belle	protein from Drosophila melanogaster	1.5e-27
BLAST match view associations BLAST with TIF1 TIF1 TIF1 ATP-dependent RNA helicase eIF4A	protein from Magnaporthe oryzae 70-15	1.9e-27
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus licheniformis DSM 13 = ATCC 14580	2.3e-27
BLAST match view associations BLAST with SO_4034 SO_4034 SO_4034 ATP-dependent RNA helicase DeaD	protein from Shewanella oneidensis MR-1	3.4e-27
BLAST match view associations BLAST with VC_0660 VC_0660 VC_0660 ATP-dependent RNA helicase SrmB	protein from Vibrio cholerae O1 biovar El Tor str. N16961	7.8e-27
BLAST match view associations BLAST with VC_0660 VC_0660 VC_0660 ATP-dependent RNA helicase SrmB	protein from Vibrio cholerae O1 biovar El Tor	7.8e-27
BLAST match view associations BLAST with AT4G33370 AT4G33370 AT4G33370	protein from Arabidopsis thaliana	9.8e-27
BLAST match view associations BLAST with abs abs abs abstrakt	protein from Drosophila melanogaster	1.0e-26
BLAST match view associations BLAST with RVBD_3211 RVBD_3211 RVBD_3211 ATP-dependent RNA helicase rhlE	protein from Mycobacterium tuberculosis H37Rv	1.1e-26
BLAST match view associations BLAST with helA helA helA putative RNA helicase	gene from Dictyostelium discoideum	1.2e-26
BLAST match view associations BLAST with TIF TIF TIF	gene_product from Candida albicans	2.0e-26
BLAST match view associations BLAST with TIF1 TIF1 TIF1 ATP-dependent RNA helicase eIF4A	protein from Candida albicans SC5314	2.0e-26
BLAST match view associations BLAST with SO_2571 SO_2571 SO_2571 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	2.0e-26
BLAST match view associations BLAST with SO_2571 SO_2571 SO_2571 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.0e-26
BLAST match view associations BLAST with vasa vasa vasa vasa homolog	gene_product from Danio rerio	2.4e-26
BLAST match view associations BLAST with DDB_G0281925 DDB_G0281925 DDB_G0281925 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.0e-26
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy8712
        (651 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0015075 - symbol:Ddx1 "Dead-box-1" species:7227 "D...  1615  6.3e-225  2
UNIPROTKB|Q92499 - symbol:DDX1 "ATP-dependent RNA helicas...  1528  6.1e-183  2
UNIPROTKB|Q5NVJ8 - symbol:DDX1 "ATP-dependent RNA helicas...  1528  6.1e-183  2
RGD|619903 - symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box heli...  1526  1.3e-182  2
UNIPROTKB|Q4R7L5 - symbol:DDX1 "ATP-dependent RNA helicas...  1524  1.6e-182  2
UNIPROTKB|Q0IIK5 - symbol:DDX1 "ATP-dependent RNA helicas...  1520  4.3e-182  2
MGI|MGI:2144727 - symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box...  1515  1.8e-181  2
UNIPROTKB|A2VD92 - symbol:ddx1 "ATP-dependent RNA helicas...  1515  3.8e-181  2
UNIPROTKB|F6V659 - symbol:DDX1 "Uncharacterized protein" ...  1510  4.9e-181  2
UNIPROTKB|F1NV49 - symbol:DDX1 "ATP-dependent RNA helicas...  1510  1.6e-180  2
UNIPROTKB|Q5XH91 - symbol:ddx1 "ATP-dependent RNA helicas...  1503  7.1e-180  2
UNIPROTKB|Q90WU3 - symbol:DDX1 "ATP-dependent RNA helicas...  1503  9.1e-180  2
UNIPROTKB|F1NRD9 - symbol:DDX1 "ATP-dependent RNA helicas...  1489  2.7e-178  2
UNIPROTKB|E2QRW3 - symbol:DDX1 "Uncharacterized protein" ...  1482  4.5e-178  2
ZFIN|ZDB-GENE-041001-215 - symbol:ddx1 "DEAD (Asp-Glu-Ala...  1488  5.7e-178  2
UNIPROTKB|F1SCS1 - symbol:F1SCS1 "Uncharacterized protein...  1355  1.2e-164  2
WB|WBGene00021938 - symbol:Y55F3BR.1 species:6239 "Caenor...  1009  6.3e-127  2
DICTYBASE|DDB_G0269966 - symbol:ddx1 "SPla/RYanodine rece...   590  4.0e-116  3
UNIPROTKB|I3LGP0 - symbol:I3LGP0 "Uncharacterized protein...   682  1.4e-93   2
UNIPROTKB|Q24731 - symbol:Ddx1 "ATP-dependent RNA helicas...   431  5.5e-92   3
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas...   246  8.9e-40   3
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he...   246  8.9e-40   3
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli...   215  5.5e-38   3
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli...   215  5.5e-38   3
WB|WBGene00017620 - symbol:F20A1.9 species:6239 "Caenorha...   395  2.7e-36   1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   226  3.1e-35   3
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel...   223  7.0e-35   3
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he...   223  7.0e-35   3
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel...   258  1.5e-34   3
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he...   258  1.5e-34   3
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN...   211  3.6e-34   3
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h...   213  1.1e-33   3
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he...   206  2.6e-33   3
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli...   210  7.5e-33   3
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ...   209  7.8e-33   3
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel...   195  1.4e-32   3
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he...   195  1.4e-32   3
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli...   204  2.5e-32   3
UNIPROTKB|Q8EGU0 - symbol:SO_1501 "ATP-dependent RNA heli...   216  4.9e-32   3
TIGR_CMR|SO_1501 - symbol:SO_1501 "ATP-dependent RNA heli...   216  4.9e-32   3
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen...   206  8.0e-32   3
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he...   211  8.4e-32   3
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he...   199  1.8e-30   3
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he...   200  2.6e-30   3
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli...   198  3.6e-30   3
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli...   198  3.6e-30   3
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote...   206  3.8e-30   3
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he...   196  7.0e-30   3
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat...   228  1.4e-29   3
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel...   183  1.4e-29   3
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he...   183  1.4e-29   3
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN...   186  4.6e-29   3
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN...   186  4.8e-29   3
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN...   186  4.8e-29   3
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN...   186  4.8e-29   3
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN...   186  4.8e-29   3
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli...   186  4.8e-29   3
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN...   186  5.0e-29   3
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he...   190  7.2e-29   3
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic...   182  7.2e-29   3
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli...   182  7.2e-29   3
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he...   189  7.5e-29   3
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he...   186  8.1e-29   3
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli...   213  8.3e-29   3
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli...   213  8.3e-29   3
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen...   216  8.8e-29   3
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende...   216  8.8e-29   3
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel...   189  8.8e-29   3
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he...   189  8.8e-29   3
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac...   215  1.5e-28   4
DICTYBASE|DDB_G0292108 - symbol:DDB_G0292108 "DEAD-box AT...   194  2.3e-28   3
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN...   191  5.0e-28   3
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli...   188  6.1e-28   3
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli...   188  6.1e-28   3
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica...   176  6.2e-28   4
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot...   195  7.6e-28   3
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati...   195  7.6e-28   3
WB|WBGene00000479 - symbol:cgh-1 species:6239 "Caenorhabd...   202  1.1e-27   3
UNIPROTKB|Q95YF3 - symbol:cgh-1 "ATP-dependent RNA helica...   202  1.1e-27   3
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini...   194  1.2e-27   4
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli...   178  1.2e-27   3
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph...   211  1.5e-27   3
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer...   207  1.7e-27   4
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas...   206  1.9e-27   3
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN...   184  2.3e-27   3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer...   165  2.3e-27   3
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli...   183  3.4e-27   3
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R...   158  3.5e-27   3
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli...   161  7.8e-27   3
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli...   161  7.8e-27   3
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi...   216  9.8e-27   3
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros...   196  1.0e-26   3
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN...   188  1.1e-26   3
DICTYBASE|DDB_G0292992 - symbol:helA "putative RNA helica...   180  1.2e-26   3
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican...   202  2.0e-26   3
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas...   202  2.0e-26   3
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli...   159  2.0e-26   3
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli...   159  2.0e-26   3
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe...   189  2.4e-26   3
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b...   210  3.0e-26   3

WARNING:  Descriptions of 798 database sequences were not reported due to the
          limiting value of parameter V = 100.


>FB|FBgn0015075 [details] [associations]
            symbol:Ddx1 "Dead-box-1" species:7227 "Drosophila
            melanogaster" [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0006446 "regulation of translational initiation"
            evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
            [GO:0001700 "embryonic development via the syncytial blastoderm"
            evidence=IEP] [GO:0000245 "spliceosomal complex assembly"
            evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:AE014296 GO:GO:0001700 GO:GO:0003682 GO:GO:0042254
            InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302
            GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
            GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 EMBL:AF057167
            GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653 KO:K13177
            OMA:TLNNVKQ EMBL:U34773 EMBL:AY119661 RefSeq:NP_524212.2
            UniGene:Dm.2501 ProteinModelPortal:Q9VNV3 SMR:Q9VNV3 IntAct:Q9VNV3
            STRING:Q9VNV3 PaxDb:Q9VNV3 PRIDE:Q9VNV3 EnsemblMetazoa:FBtr0078492
            GeneID:40457 KEGG:dme:Dmel_CG9054 UCSC:CG9054-RA
            FlyBase:FBgn0015075 InParanoid:Q9VNV3 OrthoDB:EOG43FFBW
            PhylomeDB:Q9VNV3 GenomeRNAi:40457 NextBio:818872 Bgee:Q9VNV3
            GermOnline:CG9054 Uniprot:Q9VNV3
        Length = 727

 Score = 1615 (573.6 bits), Expect = 6.3e-225, Sum P(2) = 6.3e-225
 Identities = 310/478 (64%), Positives = 363/478 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M AFEE GVLPE+G A +E+DW LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
Sbjct:     1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60

Query:    61 IQIVCETLKEIXXXXXXXXXXXX-VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHG 119
             +QIV ETL+++              ++P W +S +DR  A+A+TP+GLRCQSRE KEWHG
Sbjct:    61 LQIVWETLRDLEEGKAGKGGAIGGAVTP-WTMSFFDRGNALAVTPDGLRCQSREFKEWHG 119

Query:   120 CRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQFD 179
             CRA  GV G+GK+Y+EATVTDEGLCRVGWST QA                 KKSNN+QFD
Sbjct:   120 CRATTGVRGKGKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFD 179

Query:   180 NYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSF 239
             +YGEAFG  DVIGCLLDL N  V+FTKNGQ+LG+AF +   L    FYPAVVLKNAEM F
Sbjct:   180 DYGEAFGKADVIGCLLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQF 239

Query:   240 NFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAG-P-VKLVNNAPQAIIIEPSRELA 297
             NFG T FK+ P   ++  C A  ++ K +     +AG P  K   NAPQAII+EPSRELA
Sbjct:   240 NFGKTDFKYAPGNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELA 299

Query:   298 EQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL 357
             EQT+NQI KFK  +++P++R LL+IGGV +++Q + L  G  IVVGTPGR+E++I+ G +
Sbjct:   300 EQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSGLV 359

Query:   358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMA 417
              LTHCRFFVLDEAD LLKQGY  LIDR+HKQIPKITSDG+RLQM+VCSATLH F+VKKMA
Sbjct:   360 LLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSATLHAFEVKKMA 419

Query:   418 ERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPG 475
             ERLM+FPTWVDLKGEDAVPETVHHVV  +DPQ D TW  LR  I TDGVH RDN  PG
Sbjct:   420 ERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPG 477

 Score = 579 (208.9 bits), Expect = 6.3e-225, Sum P(2) = 6.3e-225
 Identities = 106/174 (60%), Positives = 137/174 (78%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  G+DI+GLPF+IN+TLPDDK NYVHRIGRVGRAERMGLAISLV+TVPEKVWYHGEW
Sbjct:   566 DVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHGEW 625

Query:   530 CATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589
             C +RGR+C+NT LT+V+G                CCIW++E  +L E+E+HLN+TIQQVD
Sbjct:   626 CKSRGRSCNNTNLTEVRG----------------CCIWYNEPNLLAEVEDHLNITIQQVD 669

Query:   590 DKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQMEPSVNKLSKLESKAQLIYLK 643
               +++P ++FDGKVVYGQK +  GS YE+HV Q+ P+V KL++LE ++Q ++LK
Sbjct:   670 KTMDVPVNDFDGKVVYGQKNLRTGSGYEDHVEQLVPTVRKLTELELQSQSLFLK 723


>UNIPROTKB|Q92499 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003725 "double-stranded RNA
            binding" evidence=IEA] [GO:0009615 "response to virus"
            evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=NAS] [GO:0000245 "spliceosomal complex assembly"
            evidence=NAS] [GO:0007275 "multicellular organismal development"
            evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0033677
            "DNA/RNA helicase activity" evidence=IDA] [GO:0032508 "DNA duplex
            unwinding" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=IDA] [GO:0004518 "nuclease activity" evidence=IDA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003712
            "transcription cofactor activity" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IDA] [GO:0072669 "tRNA-splicing ligase complex"
            evidence=IDA] [GO:0071920 "cleavage body" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0003724 "RNA helicase
            activity" evidence=TAS] [GO:0090305 "nucleic acid phosphodiester
            bond hydrolysis" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006446 GO:GO:0006351
            GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
            GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
            InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
            GO:GO:0004518 GO:GO:0010494 GO:GO:0000245 GO:GO:0008026
            GO:GO:0043330 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
            GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
            OrthoDB:EOG46HG95 HOGENOM:HOG000251633 EMBL:X70649 EMBL:BC012132
            EMBL:BC053673 IPI:IPI00293655 RefSeq:NP_004930.1 UniGene:Hs.440599
            ProteinModelPortal:Q92499 SMR:Q92499 IntAct:Q92499
            MINT:MINT-5005493 STRING:Q92499 PhosphoSite:Q92499 DMDM:6919862
            REPRODUCTION-2DPAGE:IPI00293655 PaxDb:Q92499 PeptideAtlas:Q92499
            PRIDE:Q92499 Ensembl:ENST00000233084 Ensembl:ENST00000381341
            GeneID:1653 KEGG:hsa:1653 UCSC:uc002rce.3 GeneCards:GC02P015731
            HGNC:HGNC:2734 HPA:CAB012280 HPA:HPA034502 HPA:HPA034503 MIM:601257
            neXtProt:NX_Q92499 PharmGKB:PA27199 InParanoid:Q92499
            PhylomeDB:Q92499 ChiTaRS:DDX1 GenomeRNAi:1653 NextBio:6806
            ArrayExpress:Q92499 Bgee:Q92499 CleanEx:HS_DDX1
            Genevestigator:Q92499 GermOnline:ENSG00000079785 Uniprot:Q92499
        Length = 740

 Score = 1528 (542.9 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
 Identities = 298/481 (61%), Positives = 361/481 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCRA KG+  +GK+YYE +  D+GLCRVGWST QA                 KKS+NKQ
Sbjct:   120 HGCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
              FNFG   FK  PPKD ++A+  AP    VK   S +      K + NAP+A+I+EPSRE
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N I +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+RMH QIP++TSDGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL +SHI+TD VHA+DN RP
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 269 (99.8 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEDGG 648

 Score = 256 (95.2 bits), Expect = 1.4e-181, Sum P(2) = 1.4e-181
 Identities = 57/144 (39%), Positives = 83/144 (57%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G SY+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|Q5NVJ8 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9601
            "Pongo abelii" [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
            "DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
            activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
            GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
            GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
            PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
            GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 CTD:1653
            HOVERGEN:HBG005462 KO:K13177 HSSP:P10081 EMBL:CR926030
            RefSeq:NP_001127099.1 UniGene:Pab.18409 ProteinModelPortal:Q5NVJ8
            GeneID:100174133 KEGG:pon:100174133 InParanoid:Q5NVJ8
            Uniprot:Q5NVJ8
        Length = 740

 Score = 1528 (542.9 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
 Identities = 298/481 (61%), Positives = 361/481 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCRA KG+  +GK+YYE +  D+GLCRVGWST QA                 KKS+NKQ
Sbjct:   120 HGCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
              FNFG   FK  PPKD ++A+  AP    VK   S +      K + NAP+A+I+EPSRE
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N I +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+RMH QIP++TSDGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL +SHI+TD VHA+DN RP
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 269 (99.8 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEDGG 648

 Score = 253 (94.1 bits), Expect = 3.0e-181, Sum P(2) = 3.0e-181
 Identities = 57/144 (39%), Positives = 82/144 (56%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G SY+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V  L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQGLAALEKEAQTSFL 727


>RGD|619903 [details] [associations]
            symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box helicase 1" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003712
            "transcription cofactor activity" evidence=ISO;ISS] [GO:0003725
            "double-stranded RNA binding" evidence=IEA;ISO] [GO:0004518
            "nuclease activity" evidence=ISO;ISS] [GO:0004527 "exonuclease
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0006302 "double-strand break repair"
            evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007275 "multicellular organismal development"
            evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISO;ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISO;ISS] [GO:0009615 "response to virus" evidence=IEA;ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0032508
            "DNA duplex unwinding" evidence=ISO;ISS] [GO:0033677 "DNA/RNA
            helicase activity" evidence=ISO;ISS] [GO:0043330 "response to
            exogenous dsRNA" evidence=IEA;ISO] [GO:0071920 "cleavage body"
            evidence=ISO;ISS] [GO:0072669 "tRNA-splicing ligase complex"
            evidence=ISO;ISS] [GO:0090305 "nucleic acid phosphodiester bond
            hydrolysis" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:619903 GO:GO:0007275
            GO:GO:0005524 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
            GO:GO:0006351 GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985
            SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0004527 GO:GO:0006302
            GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
            GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
            GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
            GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653
            HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95
            HOGENOM:HOG000251633 EMBL:BC082049 IPI:IPI00555314
            RefSeq:NP_445866.1 UniGene:Rn.65536 ProteinModelPortal:Q641Y8
            IntAct:Q641Y8 STRING:Q641Y8 PRIDE:Q641Y8 Ensembl:ENSRNOT00000009100
            GeneID:84474 KEGG:rno:84474 InParanoid:Q641Y8 NextBio:616970
            ArrayExpress:Q641Y8 Genevestigator:Q641Y8
            GermOnline:ENSRNOG00000006652 Uniprot:Q641Y8
        Length = 740

 Score = 1526 (542.2 bits), Expect = 1.3e-182, Sum P(2) = 1.3e-182
 Identities = 299/483 (61%), Positives = 365/483 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKATIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCRA +G+  RGK+YYE +  D+GLCRVGWST QA                 KKS+NKQ
Sbjct:   120 HGCRATRGLL-RGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQNV---KHSESADVSAGPVKLVNNAPQAIIIEPS 293
              FNFG   FK  PPKD ++A+  AP   V   +H+ +A VS    K + NAP+A+I+EPS
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALSKAPDSYVVKSQHTGNAQVSQ--TKFLPNAPKALIVEPS 295

Query:   294 RELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS 353
             RELAEQT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S
Sbjct:   296 RELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVS 355

Query:   354 GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV 413
              G L+L+  RF VLDEADGLL QGY + I+RMH QIP+ITSDGKRLQ+IVCSATLH FDV
Sbjct:   356 TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDV 415

Query:   414 KKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNA 472
             KK++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL ++HI+TD VHA+DN 
Sbjct:   416 KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNT 475

Query:   473 RPG 475
             RPG
Sbjct:   476 RPG 478

 Score = 268 (99.4 bits), Expect = 1.3e-182, Sum P(2) = 1.3e-182
 Identities = 52/78 (66%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C+ RG+ C NT+L +  G
Sbjct:   631 CSNRGKGCYNTRLKEDGG 648

 Score = 252 (93.8 bits), Expect = 6.2e-181, Sum P(2) = 6.2e-181
 Identities = 56/144 (38%), Positives = 82/144 (56%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C+ RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G +Y+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|Q4R7L5 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9541
            "Macaca fascicularis" [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
            "DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
            activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
            GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
            GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
            PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
            GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 HOVERGEN:HBG005462
            OrthoDB:EOG46HG95 HSSP:P10081 EMBL:AB168800
            ProteinModelPortal:Q4R7L5 PRIDE:Q4R7L5 Uniprot:Q4R7L5
        Length = 740

 Score = 1524 (541.5 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
 Identities = 297/481 (61%), Positives = 361/481 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCRA KG+  +GK+YYE +  D+GLCRVGWST QA                 KKS+NKQ
Sbjct:   120 HGCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
              FNFG   FK  PPKD ++A+  AP    VK   S +      K + NAP+A+I+EPSRE
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N I +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+RMH QIP++TSDGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLTQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL ++HI+TD VHA+DN RP
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 269 (99.8 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEDGG 648

 Score = 256 (95.2 bits), Expect = 3.8e-181, Sum P(2) = 3.8e-181
 Identities = 57/144 (39%), Positives = 83/144 (57%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G SY+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|Q0IIK5 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=ISS] [GO:0033677
            "DNA/RNA helicase activity" evidence=ISS] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004518 "nuclease activity" evidence=ISS] [GO:0003712
            "transcription cofactor activity" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0032508 "DNA duplex
            unwinding" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0043330 "response to exogenous dsRNA"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004527 "exonuclease activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
            GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
            GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
            InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
            GO:GO:0004518 GO:GO:0010494 GO:GO:0008026 GO:GO:0043330
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
            GO:GO:0008143 GO:GO:0071920 GeneTree:ENSGT00660000095174
            GO:GO:0033677 EMBL:BC122599 IPI:IPI00716534 RefSeq:NP_001068936.1
            UniGene:Bt.1784 ProteinModelPortal:Q0IIK5 STRING:Q0IIK5
            PRIDE:Q0IIK5 Ensembl:ENSBTAT00000013075 GeneID:510816
            KEGG:bta:510816 CTD:1653 HOVERGEN:HBG005462 InParanoid:Q0IIK5
            KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95 NextBio:20869630
            ArrayExpress:Q0IIK5 Uniprot:Q0IIK5
        Length = 740

 Score = 1520 (540.1 bits), Expect = 4.3e-182, Sum P(2) = 4.3e-182
 Identities = 298/483 (61%), Positives = 366/483 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKATIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCRA KG+  +GK+YYE +  D+GLCRVGWS+ QA                 KKS+NKQ
Sbjct:   120 HGCRATKGLT-KGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQNV---KHSESADVSAGPVKLVNNAPQAIIIEPS 293
              FNFG   FK  PPKD ++A+  AP+  V   +H+ SA V+    K + NAP+A+I+EPS
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALSKAPESFVVKSQHTGSAQVAQ--TKFLPNAPKALIVEPS 295

Query:   294 RELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS 353
             RELAEQT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S
Sbjct:   296 RELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVS 355

Query:   354 GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV 413
              G L+L+  RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDV
Sbjct:   356 TGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDV 415

Query:   414 KKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNA 472
             KK++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL +SHI+TD VHA+DN 
Sbjct:   416 KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDEVHAKDNT 475

Query:   473 RPG 475
             RPG
Sbjct:   476 RPG 478

 Score = 269 (99.8 bits), Expect = 4.3e-182, Sum P(2) = 4.3e-182
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEDGG 648

 Score = 253 (94.1 bits), Expect = 2.1e-180, Sum P(2) = 2.1e-180
 Identities = 56/144 (38%), Positives = 83/144 (57%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G +Y+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDVLAPTVQELAALEKEAQTSFL 727


>MGI|MGI:2144727 [details] [associations]
            symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=ISO] [GO:0003712 "transcription cofactor
            activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302 "double-strand
            break repair" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISO] [GO:0008143 "poly(A) RNA binding"
            evidence=ISO] [GO:0009615 "response to virus" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;IDA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0033677 "DNA/RNA helicase activity"
            evidence=ISO] [GO:0043330 "response to exogenous dsRNA"
            evidence=IMP] [GO:0071920 "cleavage body" evidence=ISO] [GO:0072669
            "tRNA-splicing ligase complex" evidence=ISO] [GO:0090305 "nucleic
            acid phosphodiester bond hydrolysis" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2144727 GO:GO:0007275
            GO:GO:0005524 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
            GO:GO:0006351 GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985
            SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0004527 GO:GO:0006302
            GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
            GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
            GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
            GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653
            HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95
            HOGENOM:HOG000251633 EMBL:AK028341 EMBL:AK153335 EMBL:AK160982
            EMBL:BC010624 IPI:IPI00127172 RefSeq:NP_598801.1 UniGene:Mm.251255
            ProteinModelPortal:Q91VR5 SMR:Q91VR5 IntAct:Q91VR5 STRING:Q91VR5
            PhosphoSite:Q91VR5 REPRODUCTION-2DPAGE:Q91VR5 PaxDb:Q91VR5
            PRIDE:Q91VR5 Ensembl:ENSMUST00000071103 GeneID:104721
            KEGG:mmu:104721 UCSC:uc007nbh.1 InParanoid:Q91VR5 NextBio:357236
            Bgee:Q91VR5 CleanEx:MM_DDX1 Genevestigator:Q91VR5
            GermOnline:ENSMUSG00000037149 Uniprot:Q91VR5
        Length = 740

 Score = 1515 (538.4 bits), Expect = 1.8e-181, Sum P(2) = 1.8e-181
 Identities = 293/481 (60%), Positives = 360/481 (74%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCR  +G+  +GK+YYE +  D+GLCRVGWST QA                 KKS+NKQ
Sbjct:   120 HGCRGTRGLL-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
              FNFG   FK  PPKD ++A+  AP    VK   + +      K + NAP+A+I+EPSRE
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALSKAPDNYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+RMH QIP+IT DGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITCDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D+ W RL ++HI+TD VHA+DN RP
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 268 (99.4 bits), Expect = 1.8e-181, Sum P(2) = 1.8e-181
 Identities = 52/78 (66%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C+ RG+ C NT+L +  G
Sbjct:   631 CSNRGKGCYNTRLKEDGG 648

 Score = 253 (94.1 bits), Expect = 7.1e-180, Sum P(2) = 7.1e-180
 Identities = 56/144 (38%), Positives = 82/144 (56%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C+ RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G +Y+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDVLAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|A2VD92 [details] [associations]
            symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8355
            "Xenopus laevis" [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033677
            "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
            "tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
            acid phosphodiester bond hydrolysis" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
            GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
            GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
            SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
            GO:GO:0008143 GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177
            EMBL:BC129617 RefSeq:NP_001091352.1 UniGene:Xl.75260
            ProteinModelPortal:A2VD92 IntAct:A2VD92 PRIDE:A2VD92
            GeneID:100037192 KEGG:xla:100037192 Xenbase:XB-GENE-969102
            Uniprot:A2VD92
        Length = 740

 Score = 1515 (538.4 bits), Expect = 3.8e-181, Sum P(2) = 3.8e-181
 Identities = 291/480 (60%), Positives = 361/480 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLKEIXXXXXXXXX--XXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
             IQIV ETLK+                +   W ++ +DR +A AI  +GL CQSRE KEWH
Sbjct:    61 IQIVYETLKDQQEGKKGKASVKTGSTVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH 120

Query:   119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
             GCR+ +GV  +GKYYYE +  D+GLCRVGWST  A                 KKS+NKQF
Sbjct:   121 GCRSTRGV-NKGKYYYEVSCHDQGLCRVGWSTLSASLDLGTDKFGFGFGGTGKKSHNKQF 179

Query:   179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
             DNYGE F MHD IGC LD+DN  V F+KNG+ LGLAF I   +KN AF+ + VLKNAE+ 
Sbjct:   180 DNYGEEFTMHDTIGCYLDIDNSIVKFSKNGKDLGLAFQIPSHMKNQAFFTSCVLKNAELK 239

Query:   239 FNFGATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSREL 296
             FNFG   FK  PPKD ++A+  AP  +V K   +        K + NAP+A+IIEPSREL
Sbjct:   240 FNFGEEDFKF-PPKDGFVALSKAPDGHVVKSQNTGSAQVSQTKSLPNAPKALIIEPSREL 298

Query:   297 AEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH 356
             AEQT N + +FKK++ +PK+RELLIIGGV  K+Q+++L +GVDIVVGTPGR++DLIS G 
Sbjct:   299 AEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIVVGTPGRIDDLISTGK 358

Query:   357 LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416
             LSL+  RF VLDEADGLL QGY + I+R++ QIP+ITSDGKRLQ+IVCSATLH FDVKK+
Sbjct:   359 LSLSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQITSDGKRLQVIVCSATLHSFDVKKL 418

Query:   417 AERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             +E++M+FPTWVDLKGED+VPETVHHVVV ++P++D+ W +L ++HI+TDGVH +DN RPG
Sbjct:   419 SEKIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWEKLAKNHIRTDGVHDKDNTRPG 478

 Score = 265 (98.3 bits), Expect = 3.8e-181, Sum P(2) = 3.8e-181
 Identities = 51/78 (65%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV++  EKVWYH   
Sbjct:   573 DVAARGIDIRGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVASEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEDGG 648

 Score = 244 (91.0 bits), Expect = 6.3e-179, Sum P(2) = 6.3e-179
 Identities = 54/144 (37%), Positives = 82/144 (56%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVASEKEKVWYHVCSSRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHL  TI QV+  +++P D+FDGKVVYGQ+R   G  Y+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLTCTISQVEPDIKVPLDDFDGKVVYGQRRATGGGLYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELASLEKEAQTSFL 727


>UNIPROTKB|F6V659 [details] [associations]
            symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
            SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 CTD:1653 KO:K13177
            OMA:TLNNVKQ Ensembl:ENSCAFT00000005957 EMBL:AAEX03010740
            EMBL:AAEX03010739 RefSeq:XP_848865.1 GeneID:475671 KEGG:cfa:475671
            Uniprot:F6V659
        Length = 740

 Score = 1510 (536.6 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
 Identities = 293/481 (60%), Positives = 360/481 (74%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
             IQIV ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEW
Sbjct:    61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119

Query:   118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
             HGCRA KG+  +GK+YYE +  D+GLCRVGWS+ QA                 KKS+NKQ
Sbjct:   120 HGCRATKGLT-KGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQ 178

Query:   178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
             FDNYGE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+
Sbjct:   179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238

Query:   238 SFNFGATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
              FNFG   FK  PPKD ++A+  A    V K   + +      K + NAP+A+I+EPSRE
Sbjct:   239 KFNFGEEEFKF-PPKDGFVALAKASDSYVVKSQHTGNAQVAQTKFLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL ++HI+TD VHA+DN RP
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKADRLWERLGKNHIRTDDVHAKDNTRP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 269 (99.8 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEDGG 648

 Score = 252 (93.8 bits), Expect = 3.1e-179, Sum P(2) = 3.1e-179
 Identities = 56/144 (38%), Positives = 83/144 (57%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G +Y+ 
Sbjct:   648 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAIGGGNYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|F1NV49 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
            SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 IPI:IPI00585086
            EMBL:AADN02018635 EMBL:AADN02018636 Ensembl:ENSGALT00000026560
            ArrayExpress:F1NV49 Uniprot:F1NV49
        Length = 740

 Score = 1510 (536.6 bits), Expect = 1.6e-180, Sum P(2) = 1.6e-180
 Identities = 295/481 (61%), Positives = 360/481 (74%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLKEIXXXXXXXXXXXX--VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
             IQIV ETLK+                +   W ++ +DR +A AI  +GL CQSRE KEWH
Sbjct:    61 IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH 120

Query:   119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
             GCRA +GV  +GKYYYE +  D+GLCRVGWST QA                 KKS+NKQF
Sbjct:   121 GCRATRGVT-KGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF 179

Query:   179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
             D+YGE F MHD IGC LD+D   + F+KNG+ LGLAF     ++N A + A VLKNAE+ 
Sbjct:   180 DSYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELK 239

Query:   239 FNFGATPFKHEPPKD-YIAVCNAPKQNVKHSESADVSAGPVKLVN--NAPQAIIIEPSRE 295
             FNFG   FK  PPKD YI +C AP  NV  S+    +A  V+  N  NAP+A+I+EPSRE
Sbjct:   240 FNFGEEDFKF-PPKDGYIGLCKAPDGNVVKSQHTG-NAQVVQTQNLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL  GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VPETVHHVVV ++P+ D+ W RL ++HI+TD VHA+DN RP
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTRP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 264 (98.0 bits), Expect = 1.6e-180, Sum P(2) = 1.6e-180
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+   EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAKEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEEGG 648

 Score = 253 (94.1 bits), Expect = 2.4e-179, Sum P(2) = 2.4e-179
 Identities = 56/144 (38%), Positives = 84/144 (58%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L + +G           
Sbjct:   600 VHRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKE-EG----------- 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++LGEIEEHLN TI QV+  +++P D+FDGKV YGQKR   G  Y+ 
Sbjct:   648 ----GCTIWYNEMQLLGEIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|Q5XH91 [details] [associations]
            symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin binding"
            evidence=ISS] [GO:0003712 "transcription cofactor activity"
            evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
            break repair" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
            [GO:0033677 "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
            "tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
            acid phosphodiester bond hydrolysis" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
            GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
            GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
            SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0032508 GO:GO:0008143 GeneTree:ENSGT00660000095174
            GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
            OrthoDB:EOG46HG95 HSSP:P10081 HOGENOM:HOG000251633 EMBL:CR855610
            EMBL:BC084181 RefSeq:NP_001011133.1 UniGene:Str.3470
            ProteinModelPortal:Q5XH91 STRING:Q5XH91 PRIDE:Q5XH91
            Ensembl:ENSXETT00000038646 GeneID:496549 KEGG:xtr:496549
            Xenbase:XB-GENE-969096 InParanoid:Q5XH91 Bgee:Q5XH91 Uniprot:Q5XH91
        Length = 740

 Score = 1503 (534.1 bits), Expect = 7.1e-180, Sum P(2) = 7.1e-180
 Identities = 289/480 (60%), Positives = 360/480 (75%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+ EI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLKEIXXXXXXXXX--XXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
             IQIV ETLK+                +   W ++ +DR ++ AI  +GL CQSRE KEWH
Sbjct:    61 IQIVYETLKDQQEGKKGKTSVKTGSTVLNKWQMNPYDRGSSFAIGSDGLCCQSREIKEWH 120

Query:   119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
             GCR+ +GV  +GKYYYE +  D+GLCRVGWST QA                 KKS+NKQF
Sbjct:   121 GCRSTRGV-NKGKYYYEVSCHDQGLCRVGWSTLQASLDLGTDKFGFGFGGTGKKSHNKQF 179

Query:   179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
             DNYGE F MHD IGC +D+DN TV ++KNG+ LGLAF I   LKN A + + VLKNAE+ 
Sbjct:   180 DNYGEEFTMHDTIGCYIDIDNGTVKYSKNGKDLGLAFQIPAHLKNQAVFASCVLKNAELK 239

Query:   239 FNFGATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSREL 296
             FNFG   FK  PPKD ++A+  AP  +V K   +        K + NAP+A+IIEPSREL
Sbjct:   240 FNFGEEDFKF-PPKDGFVALSKAPDGHVVKSQNTGSAQVSQAKNLPNAPKALIIEPSREL 298

Query:   297 AEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH 356
             AEQT N + +FKK++  PK+RELLIIGGV  K+Q+++L +GVDIVVGTPGR++DLIS G 
Sbjct:   299 AEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIVVGTPGRIDDLISTGK 358

Query:   357 LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416
             L+L+  RF VLDEADGLL QGY + I+R+H QIP++TSDGKRLQ+IVCSATLH FDVKK+
Sbjct:   359 LNLSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQVTSDGKRLQVIVCSATLHSFDVKKL 418

Query:   417 AERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             +E++M+FPTWVDLKGED+VPETVHHVVV ++P++D+ W RL ++HI+TDGVH +DN RPG
Sbjct:   419 SEKIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWERLGKNHIRTDGVHDKDNTRPG 478

 Score = 265 (98.3 bits), Expect = 7.1e-180, Sum P(2) = 7.1e-180
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+   EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAAEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCHNTRLKEDGG 648

 Score = 247 (92.0 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
 Identities = 55/144 (38%), Positives = 82/144 (56%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   600 VHRIGRVGRAERMGLAISLVAAEKEKVWYHVCSSRGKGCHNTRLKE------------DG 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHL  TI QV+  +++P DEFDGKVVYGQ+R   G  Y+ 
Sbjct:   648 ----GCTIWYNETQLLSEIEEHLTCTISQVEPDIKVPLDEFDGKVVYGQRRATGGGLYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|Q90WU3 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0090305
            "nucleic acid phosphodiester bond hydrolysis" evidence=ISS]
            [GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003712 "transcription
            cofactor activity" evidence=ISS] [GO:0006302 "double-strand break
            repair" evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0033677
            "DNA/RNA helicase activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006397 GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985
            SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
            InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
            GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0033677 CTD:1653
            HOVERGEN:HBG005462 KO:K13177 OrthoDB:EOG46HG95 EMBL:AY057383
            IPI:IPI00585086 RefSeq:NP_989894.1 UniGene:Gga.14606 HSSP:P10081
            ProteinModelPortal:Q90WU3 STRING:Q90WU3 PRIDE:Q90WU3 GeneID:395249
            KEGG:gga:395249 HOGENOM:HOG000251633 NextBio:20815338
            Uniprot:Q90WU3
        Length = 740

 Score = 1503 (534.1 bits), Expect = 9.1e-180, Sum P(2) = 9.1e-180
 Identities = 294/481 (61%), Positives = 359/481 (74%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLKEIXXXXXXXXXXXX--VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
             IQIV ETLK+                +   W ++ +DR +A AI  +GL CQSRE KEWH
Sbjct:    61 IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH 120

Query:   119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
             GCRA +GV  +GKYYYE +  D+GLCRVGWST QA                 KKS+NKQF
Sbjct:   121 GCRATRGVT-KGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF 179

Query:   179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
             D+YGE F MHD IGC LD+D   + F+KNG+ LGLAF     ++N A + A VLKNAE+ 
Sbjct:   180 DSYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELK 239

Query:   239 FNFGATPFKHEPPKD-YIAVCNAPKQNVKHSESADVSAGPVKLVN--NAPQAIIIEPSRE 295
             FNFG   FK  PPKD YI +C AP  NV  S+    +A  V+  N  NAP+A+I+EPSRE
Sbjct:   240 FNFGEEDFKF-PPKDGYIGLCKAPDGNVVKSQHTG-NAQVVQTQNLPNAPKALIVEPSRE 297

Query:   296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
             LAEQT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL  GVDIVVGTPGR++DL+S G
Sbjct:   298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTG 357

Query:   356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
              L+L+  RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK
Sbjct:   358 KLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKK 417

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
             ++E++M+FPTWVDLKGED+VPETVHHVVV ++P+ D+ W RL ++HI+TD VHA+DN  P
Sbjct:   418 LSEKIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTLP 477

Query:   475 G 475
             G
Sbjct:   478 G 478

 Score = 264 (98.0 bits), Expect = 9.1e-180, Sum P(2) = 9.1e-180
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+   EKVWYH   
Sbjct:   573 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAKEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   631 CSSRGKGCYNTRLKEEGG 648

 Score = 253 (94.1 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
 Identities = 56/144 (38%), Positives = 84/144 (58%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L + +G           
Sbjct:   600 VHRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKE-EG----------- 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++LGEIEEHLN TI QV+  +++P D+FDGKV YGQKR   G  Y+ 
Sbjct:   648 ----GCTIWYNEMQLLGEIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELAALEKEAQTSFL 727


>UNIPROTKB|F1NRD9 [details] [associations]
            symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
            "Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043330
            "response to exogenous dsRNA" evidence=IEA] [GO:0071920 "cleavage
            body" evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IEA]
            [GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0004518
            "nuclease activity" evidence=IEA] [GO:0006302 "double-strand break
            repair" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0032508
            "DNA duplex unwinding" evidence=IEA] [GO:0033677 "DNA/RNA helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003682
            InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0006302
            GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
            GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
            GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
            GO:GO:0008143 GO:GO:0071920 GeneTree:ENSGT00660000095174
            GO:GO:0033677 OMA:TLNNVKQ EMBL:AADN02018635 EMBL:AADN02018636
            IPI:IPI00819903 ProteinModelPortal:F1NRD9
            Ensembl:ENSGALT00000036885 ArrayExpress:F1NRD9 Uniprot:F1NRD9
        Length = 742

 Score = 1489 (529.2 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
 Identities = 291/478 (60%), Positives = 357/478 (74%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVC 65
             EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+IQIV 
Sbjct:     6 EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY 65

Query:    66 ETLKEIXXX----XXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCR 121
             ETLK+                 ++   W ++ +DR +A AI  +GL CQSRE KEWHGCR
Sbjct:    66 ETLKDQMEGKKGKATIKTGGADLVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCR 125

Query:   122 ANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQFDNY 181
             A +GV  +GKYYYE +  D+GLCRVGWST QA                 KKS+NKQFD+Y
Sbjct:   126 ATRGVT-KGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDSY 184

Query:   182 GEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241
             GE F MHD IGC LD+D   + F+KNG+ LGLAF     ++N A + A VLKNAE+ FNF
Sbjct:   185 GEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELKFNF 244

Query:   242 GATPFKHEPPKD-YIAVCNAPKQNVKHSESADVSAGPVKLVN--NAPQAIIIEPSRELAE 298
             G   FK  PPKD YI +C AP  NV  S+    +A  V+  N  NAP+A+I+EPSRELAE
Sbjct:   245 GEEDFKF-PPKDGYIGLCKAPDGNVVKSQHTG-NAQVVQTQNLPNAPKALIVEPSRELAE 302

Query:   299 QTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS 358
             QT N + +FKK+I +PK+RELLIIGGV  +DQ+SVL  GVDIVVGTPGR++DL+S G L+
Sbjct:   303 QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN 362

Query:   359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418
             L+  RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK++E
Sbjct:   363 LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE 422

Query:   419 RLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             ++M+FPTWVDLKGED+VPETVHHVVV ++P+ D+ W RL ++HI+TD VHA+DN RPG
Sbjct:   423 KIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTRPG 480

 Score = 264 (98.0 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+   EKVWYH   
Sbjct:   575 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAKEKEKVWYHV-- 632

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   633 CSSRGKGCYNTRLKEEGG 650

 Score = 253 (94.1 bits), Expect = 4.0e-177, Sum P(2) = 4.0e-177
 Identities = 56/144 (38%), Positives = 84/144 (58%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L + +G           
Sbjct:   602 VHRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKE-EG----------- 649

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++LGEIEEHLN TI QV+  +++P D+FDGKV YGQKR   G  Y+ 
Sbjct:   650 ----GCTIWYNEMQLLGEIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKG 705

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   706 HVDILAPTVQELAALEKEAQTSFL 729


>UNIPROTKB|E2QRW3 [details] [associations]
            symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
            SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 Ensembl:ENSCAFT00000005957 Uniprot:E2QRW3
        Length = 785

 Score = 1482 (526.7 bits), Expect = 4.5e-178, Sum P(2) = 4.5e-178
 Identities = 289/477 (60%), Positives = 356/477 (74%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVC 65
             EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+IQIV 
Sbjct:    50 EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY 109

Query:    66 ETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRA 122
             ETLK   E             V++  W ++ +DR +A AI  +GL CQSRE KEWHGCRA
Sbjct:   110 ETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA 168

Query:   123 NKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQFDNYG 182
              KG+  +GK+YYE +  D+GLCRVGWS+ QA                 KKS+NKQFDNYG
Sbjct:   169 TKGLT-KGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYG 227

Query:   183 EAFGMHDVIGCLLDLDNMTVAFTKN-GQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241
             E F MHD IGC LD+D   V F+KN G+ LGLAF I   +KN A +PA VLKNAE+ FNF
Sbjct:   228 EEFTMHDTIGCYLDIDKGHVKFSKNVGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNF 287

Query:   242 GATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQ 299
             G   FK  PPKD ++A+  A    V K   + +      K + NAP+A+I+EPSRELAEQ
Sbjct:   288 GEEEFKF-PPKDGFVALAKASDSYVVKSQHTGNAQVAQTKFLPNAPKALIVEPSRELAEQ 346

Query:   300 TFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSL 359
             T N + +FKK+I +PK+RELLIIGGV  +DQ+SVL +GVDIVVGTPGR++DL+S G L+L
Sbjct:   347 TLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNL 406

Query:   360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAER 419
             +  RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK++E+
Sbjct:   407 SQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEK 466

Query:   420 LMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             +M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL ++HI+TD VHA+DN RPG
Sbjct:   467 IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKADRLWERLGKNHIRTDDVHAKDNTRPG 523

 Score = 269 (99.8 bits), Expect = 4.5e-178, Sum P(2) = 4.5e-178
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   618 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 675

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   676 CSSRGKGCYNTRLKEDGG 693

 Score = 252 (93.8 bits), Expect = 2.8e-176, Sum P(2) = 2.8e-176
 Identities = 56/144 (38%), Positives = 83/144 (57%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   645 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 692

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G +Y+ 
Sbjct:   693 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAIGGGNYKG 748

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   749 HVDILAPTVQELAALEKEAQTSFL 772


>ZFIN|ZDB-GENE-041001-215 [details] [associations]
            symbol:ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-041001-215
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
            InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            CTD:1653 KO:K13177 EMBL:BX649472 EMBL:BX005358 IPI:IPI00511501
            RefSeq:NP_001184253.1 UniGene:Dr.19466 ProteinModelPortal:F1R2L8
            Ensembl:ENSDART00000023963 GeneID:556790 KEGG:dre:556790
            NextBio:20881663 ArrayExpress:F1R2L8 Bgee:F1R2L8 Uniprot:F1R2L8
        Length = 740

 Score = 1488 (528.9 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
 Identities = 285/479 (59%), Positives = 358/479 (74%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct:     1 MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60

Query:    61 IQIVCETLKEIXXXXXXXXXXXX--VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
             IQIV ET+K++               +   W ++ +DR TA AI  +GL CQSRE KEWH
Sbjct:    61 IQIVYETIKDLQEGKKGRSAVKTGGAVFSKWQMNPFDRSTAFAIGSDGLCCQSREFKEWH 120

Query:   119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
             GCR  K V  +G+YYYE    D+GLCRVGWST+QA                 KKS+NKQF
Sbjct:   121 GCRTTKAVT-KGRYYYEVACHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQF 179

Query:   179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
             D+YGE F MHD IGC +DL+   V+F+KNG  LGLAF I QQL++  F+ + VLKNAE+ 
Sbjct:   180 DSYGEEFTMHDTIGCYIDLEKGHVSFSKNGNDLGLAFEIPQQLRSQPFFASCVLKNAELK 239

Query:   239 FNFGATPFKHEPPKDYIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSRELA 297
             FNFG   FKH+P   Y+A+  AP+ +V K S++       VK  +NAP+A+IIEPS+ELA
Sbjct:   240 FNFGDEAFKHQPKDGYVALNQAPEGHVVKSSQTGSAKVTQVKSSSNAPRALIIEPSKELA 299

Query:   298 EQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL 357
             EQT N + +FKK++ +PK+RELLIIGGV  K+Q++VL SGVDIVVGTPGR++DLIS G L
Sbjct:   300 EQTLNNVNQFKKYVDNPKLRELLIIGGVAAKEQLNVLESGVDIVVGTPGRLDDLISTGKL 359

Query:   358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMA 417
              L+  RF VLDE DGLL  G  + I R++ QIP++TSDGKRLQ+IVCSATLH FDVKK++
Sbjct:   360 DLSQVRFLVLDECDGLLSAGNTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLS 419

Query:   418 ERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             E++M+FPTWVDLKGED+VPETVHHVVV ++P+ D+ W RL ++HI+TD VHA+D+ RPG
Sbjct:   420 EKIMHFPTWVDLKGEDSVPETVHHVVVTVNPKNDKLWERLGKNHIRTDEVHAKDDTRPG 478

 Score = 262 (97.3 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
 Identities = 50/78 (64%), Positives = 62/78 (79%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GID+ G+P++IN+TLPD+K NYVHRIGRVGRA+RMGLAISLV+   EKVWYH   
Sbjct:   573 DVAARGIDVRGVPYVINVTLPDEKENYVHRIGRVGRADRMGLAISLVAMEKEKVWYHV-- 630

Query:   530 CATRGRNCSNTQLTDVKG 547
             CA+RG+ C NT+L +  G
Sbjct:   631 CASRGKGCYNTRLKENGG 648

 Score = 244 (91.0 bits), Expect = 4.5e-176, Sum P(2) = 4.5e-176
 Identities = 55/144 (38%), Positives = 80/144 (55%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       CA+RG+ C NT+L   K N          
Sbjct:   600 VHRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTRL---KENG--------- 647

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++EK +L +IEEHL  TI Q +  +++P DEFDGKV YGQ+R   G  Y+ 
Sbjct:   648 ----GCTIWYNEKELLSDIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRATGGGLYKG 703

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   704 HVDILAPTVQELANLEREAQTSFL 727


>UNIPROTKB|F1SCS1 [details] [associations]
            symbol:F1SCS1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
            SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:TLNNVKQ
            EMBL:CU469153 Ensembl:ENSSSCT00000009430 Uniprot:F1SCS1
        Length = 689

 Score = 1355 (482.0 bits), Expect = 1.2e-164, Sum P(2) = 1.2e-164
 Identities = 272/477 (57%), Positives = 337/477 (70%)

Query:     7 MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
             MGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+IQIV E
Sbjct:     1 MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE 60

Query:    67 TLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAM--AITPEGLRCQSREQKEWHGCR 121
             TLK   E             V++  W ++ +DR +A   AI  +GL CQSRE KEWHGCR
Sbjct:    61 TLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFDPAIGSDGLCCQSREVKEWHGCR 119

Query:   122 ANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQFDNY 181
             A KG+  +GK+YYE +  D+GLCRVGWS+ QA                 KKS+NKQFDNY
Sbjct:   120 ATKGLT-KGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNY 178

Query:   182 GEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241
             GE F MHD IGC LD+D   V F+KNG+ LGLAF I   +KN A +PA VLKNAE+ FNF
Sbjct:   179 GEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNF 238

Query:   242 GATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQ 299
             G   FK  PPKD ++A+  A    V K   S +      K + NAP+A+I+EPSRELAEQ
Sbjct:   239 GEEEFKF-PPKDGFVALSKASDSFVVKSQHSGNAQVAQTKFLPNAPKALIVEPSRELAEQ 297

Query:   300 TFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSL 359
             T N I +FKK+I +PK+RELLIIGGV  +DQ+SVL +GV   +     +  L     L+L
Sbjct:   298 TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVSCTLIFKKNLLQLCLSPKLNL 357

Query:   360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAER 419
             +     +L   DGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK++E+
Sbjct:   358 SPVLCLMLGAEDGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEK 417

Query:   420 LMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             +M+FPTWVDLKGED+VP+TVHHVVV ++P+ D  W RL ++HI+TD VHA+DN RPG
Sbjct:   418 IMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPG 474

 Score = 269 (99.8 bits), Expect = 1.2e-164, Sum P(2) = 1.2e-164
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   569 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 626

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   627 CSSRGKGCYNTRLKEDGG 644

 Score = 181 (68.8 bits), Expect = 2.4e-155, Sum P(2) = 2.4e-155
 Identities = 42/110 (38%), Positives = 62/110 (56%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   596 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 643

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQK 608
                 GC IW++E ++L EIEEHLN TI QV+ ++++P DEFD KV YGQK
Sbjct:   644 ----GCTIWYNEMQLLSEIEEHLNCTIPQVEPEIKVPVDEFDVKVTYGQK 689


>WB|WBGene00021938 [details] [associations]
            symbol:Y55F3BR.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0040010
            GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 InterPro:IPR008985
            SUPFAM:SSF49899 EMBL:FO080861 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
            PROSITE:PS50188 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 KO:K13177 OMA:TLNNVKQ
            HSSP:P10081 HOGENOM:HOG000251633 PIR:T33691 RefSeq:NP_500004.2
            ProteinModelPortal:Q9N341 SMR:Q9N341 IntAct:Q9N341 STRING:Q9N341
            PaxDb:Q9N341 EnsemblMetazoa:Y55F3BR.1 GeneID:176913
            KEGG:cel:CELE_Y55F3BR.1 UCSC:Y55F3BR.1 CTD:176913
            WormBase:Y55F3BR.1 InParanoid:Q9N341 NextBio:894562 Uniprot:Q9N341
        Length = 728

 Score = 1009 (360.2 bits), Expect = 6.3e-127, Sum P(2) = 6.3e-127
 Identities = 208/483 (43%), Positives = 286/483 (59%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M AFEE G++PE+  A+  ++W LPT VQ+EAIP ILGG D L+AAETGSGKTGAF LPI
Sbjct:     1 MTAFEEFGIIPELSDALSSLNWTLPTAVQSEAIPAILGGADALIAAETGSGKTGAFSLPI 60

Query:    61 IQIVCETLKEIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGC 120
              QIV E  K                S  + L+  DRD ++ I   GL C+SR  KEWHG 
Sbjct:    61 AQIVWERRKSAEKSQNSGQKPEN--SREFQLNREDRDVSLQIDKTGLNCESRVAKEWHGA 118

Query:   121 RANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQFDN 180
             RA  G+YG GKYYYE TVT +GLCRVGW+T                    KKS  K+FD+
Sbjct:   119 RATAGLYGNGKYYYEVTVTRDGLCRVGWATLSGSLKIGTDFESFGYGGTGKKSFGKKFDD 178

Query:   181 YGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSA--FYPAVVLKNAEMS 238
             YG +F  +DV+GC LDLD + + ++KNG    +A+ I ++ K +A   YPA++ +N+ + 
Sbjct:   179 YGTSFTTNDVLGCFLDLDELKIWWSKNGVQFPVAYQIDKKFKTAATCLYPAILCQNSGLG 238

Query:   239 FNFGATP-FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELA 297
              NFG +  FK+ P   Y+AV  A   N+K   +A+     + + ++ P  +I+EP+REL 
Sbjct:   239 VNFGGSAAFKYPPGTQYVAVAQAEDGNLKWWSAAE----QLSIDSSTPLCVILEPTRELV 294

Query:   298 EQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL 357
             +QTF  I  F   +  PKIR + +  G N+   +  L +G DIVVGTP R+ DLI  G L
Sbjct:   295 QQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGCDIVVGTPSRVFDLIHTGKL 354

Query:   358 SLTHCRFFVLDEADGLL--KQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
             +  + +F V+DE D  L  K    + I+ + + +P +  DG R Q+I CSATLH+F+V +
Sbjct:   355 ATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQVIACSATLHNFEVCR 414

Query:   416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL---RSHIQTDGVHARDNA 472
              A+R M FP W+DLKG D V   VHHVV  +D  +D+ W R    + H++ D VH  D  
Sbjct:   415 FADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQVHLEDDHVHDGDQI 474

Query:   473 RPG 475
             RPG
Sbjct:   475 RPG 477

 Score = 258 (95.9 bits), Expect = 6.3e-127, Sum P(2) = 6.3e-127
 Identities = 63/152 (41%), Positives = 89/152 (58%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEW---CATRGRNCSNTQLTDV-KGNSQVPIF 554
             + R+GR  R   + +S +S V E  +    W   C +RG NC+NT+  D+ KG       
Sbjct:   590 VHRIGRVGRAERMGLS-ISLVSE--YEEKAWYHKCRSRGVNCTNTK--DISKG------- 637

Query:   555 LLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGS 614
                     GC IW  EK+MLGEIEEHL  TI  VD    +P DEFDGKVVYG++R   G+
Sbjct:   638 --------GCTIWLQEKKMLGEIEEHLGATISTVDSDFNVPVDEFDGKVVYGERRTG-GA 688

Query:   615 SYENHVTQMEPSVNKLSKLESKAQLIYLKHHQ 646
             +++ HV Q+  S ++L+ LE+K QL YL +++
Sbjct:   689 NFDTHVLQLASSASQLADLETKMQLEYLNNNR 720

 Score = 246 (91.7 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
 Identities = 55/119 (46%), Positives = 76/119 (63%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRG 534
             G+D+ G+PF+I++TLPD+K+ YVHRIGRVGRAERMGL+ISLVS   EK WYH   C +RG
Sbjct:   568 GLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEEKAWYHK--CRSRG 625

Query:   535 RNCSNTQLTDV-KGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKL 592
              NC+NT+  D+ KG     I+L    M+    I       +  ++   NV + + D K+
Sbjct:   626 VNCTNTK--DISKGGCT--IWLQEKKMLGE--IEEHLGATISTVDSDFNVPVDEFDGKV 678


>DICTYBASE|DDB_G0269966 [details] [associations]
            symbol:ddx1 "SPla/RYanodine receptor SPRY
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=IEA;ISS] [GO:0033677 "DNA/RNA helicase activity"
            evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0006302
            "double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0004518 "nuclease activity" evidence=IEA;ISS]
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003712
            "transcription cofactor activity" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0269966 GO:GO:0005524 GO:GO:0005634
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003682
            InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302
            GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
            GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143
            GO:GO:0033677 KO:K13177 OMA:TLNNVKQ RefSeq:XP_646435.1
            ProteinModelPortal:Q55CP6 STRING:Q55CP6 EnsemblProtists:DDB0233650
            GeneID:8617394 KEGG:ddi:DDB_G0269966 ProtClustDB:CLSZ2431424
            Uniprot:Q55CP6
        Length = 765

 Score = 590 (212.7 bits), Expect = 4.0e-116, Sum P(3) = 4.0e-116
 Identities = 130/261 (49%), Positives = 161/261 (61%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M+AFE++GVLPEI KA+EE+DWLLPT +Q EAIPLILGGGDVL AAETGSGKTGAF LPI
Sbjct:     1 MSAFEDLGVLPEIIKAIEELDWLLPTPIQTEAIPLILGGGDVLAAAETGSGKTGAFALPI 60

Query:    61 IQIVCETLK---EIXXXXXXXXXXXXVIS---------PTWILSVWDRDTAMAITPEGLR 108
             +QI  ETL    EI              S          T  L   DRD  MA+  +GL 
Sbjct:    61 LQITYETLNKKAEIPIIAPTNTSGEDGTSGGGGGGGGGDTIELDQIDRDKNMAV--DGLI 118

Query:   109 CQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXX 168
             CQSR   +W G +A KG+   GK+YYE+ V DEGLCR+G++  ++               
Sbjct:   119 CQSRSS-DWCGIKATKGI-SSGKFYYESIVRDEGLCRIGFALKKSSRNIGTDKFSWGYGG 176

Query:   169 XXKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYP 228
               KKS+  +F +YG+ FG +DVIGC ++ D   + FTKNGQ  G AF  +   K   FYP
Sbjct:   177 TGKKSHESKFIDYGKPFGNNDVIGCYINFDEEIIGFTKNGQDFGEAFTFNS--KAGIFYP 234

Query:   229 AVVLKNAEMSFNFGATPFKHE 249
             A+VLKNAEM FNFG+ P KH+
Sbjct:   235 ALVLKNAEMEFNFGSKPMKHD 255

 Score = 358 (131.1 bits), Expect = 4.0e-116, Sum P(3) = 4.0e-116
 Identities = 76/187 (40%), Positives = 115/187 (61%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             ++IIEP+RELA+Q ++ I+ F K++  PKI+  L IGG       + +    DI++GTPG
Sbjct:   321 SLIIEPTRELADQAYSAILNFSKYLDSPKIQVSLCIGGEKSNGGRNKIEG--DIIIGTPG 378

Query:   347 RMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406
             R+E L+  G + L+  +FFVLDEAD L+      +++ ++ ++P     G+ LQ++  SA
Sbjct:   379 RLESLVKEGSIDLSSIKFFVLDEADQLIDDNLA-IVNFIYNKLPI----GQNLQVLFFSA 433

Query:   407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDET-WGRLRS--HIQT 463
             TLH   V K  E++   PTWVDLKG D +P+ + H  VK DP + E+ W    +   I+T
Sbjct:   434 TLHSTKVIKFCEQITKNPTWVDLKGRDFIPDLITHAYVKADPIKFESLWRNSENPLRIRT 493

Query:   464 DGVHARD 470
             DGVHA D
Sbjct:   494 DGVHASD 500

 Score = 231 (86.4 bits), Expect = 4.0e-116, Sum P(3) = 4.0e-116
 Identities = 44/78 (56%), Positives = 58/78 (74%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI GLP++IN TLP+   +Y+HR+GRVGR++R+GLAISLV+   EKVWYH   
Sbjct:   603 DVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDRIGLAISLVAYEQEKVWYHT-- 660

Query:   530 CATRGRNCSNTQLTDVKG 547
             C  +G+ C NT+LT+  G
Sbjct:   661 CRDKGKGCHNTKLTENGG 678

 Score = 127 (49.8 bits), Expect = 3.5e-105, Sum P(3) = 3.5e-105
 Identities = 39/144 (27%), Positives = 65/144 (45%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             I RVGR  R   + +++     E+       C  +G+ C NT+LT+            +G
Sbjct:   630 IHRVGRVGRSDRIGLAISLVAYEQEKVWYHTCRDKGKGCHNTKLTE------------NG 677

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GCCIW+DE ++   I+E  N+   ++D   ++P D          K     + Y+ 
Sbjct:   678 ----GCCIWYDEPQLFTAIQE--NIGPIELDSDFQLPKDMKQLNFGGSTKLTGASADYKP 731

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             H  ++   V +LS+LE   Q+ YL
Sbjct:   732 HTEELRSRVLQLSQLEETIQIDYL 755


>UNIPROTKB|I3LGP0 [details] [associations]
            symbol:I3LGP0 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
            GO:GO:0008026 GeneTree:ENSGT00660000095174 EMBL:AEMK01181162
            EMBL:CU896557 Ensembl:ENSSSCT00000026319 OMA:NREREWH Uniprot:I3LGP0
        Length = 524

 Score = 682 (245.1 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
 Identities = 142/270 (52%), Positives = 189/270 (70%)

Query:   208 GQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKD-YIAVCNAPKQNVK 266
             G+ LGLAF I   +KN A +PA VLKNAE+ FNFG   FK  PPKD ++A+  A    V 
Sbjct:     1 GKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKF-PPKDGFVALSKASDSFVV 59

Query:   267 HSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326
              S+ +    G  ++  +   A    PS  L++  F+ I  F ++ +    RELLIIGGV 
Sbjct:    60 KSQHS----GRAQVRGHXLPA---PPSGRLSQAIFSSIHMFLEYYSGIYFRELLIIGGVA 112

Query:   327 VKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMH 386
              +DQ+SVL +GV IVVGT  R +DL+    L++   +FFV ++ DGLL QGY + I+R+H
Sbjct:   113 ARDQLSVLDNGVMIVVGTHIRDKDLMPTVTLNMKKTQFFVKNQNDGLLSQGYSDFINRIH 172

Query:   387 KQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI 446
              QIP+ITSDGKRLQ+IVCSATLH FDVKK++E++M+FPTWVDLKGED+VP+TVHHVVV +
Sbjct:   173 NQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV 232

Query:   447 DPQQDETWGRL-RSHIQTDGVHARDNARPG 475
             +P+ D  W RL ++HI+TD VHA+DN RPG
Sbjct:   233 NPKTDRLWERLGKNHIRTDEVHAKDNTRPG 262

 Score = 269 (99.8 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             D A  GIDI G+P++IN+TLPD+K NYVHRIGRVGRAERMGLAISLV+T  EKVWYH   
Sbjct:   357 DVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV-- 414

Query:   530 CATRGRNCSNTQLTDVKG 547
             C++RG+ C NT+L +  G
Sbjct:   415 CSSRGKGCYNTRLKEDGG 432

 Score = 252 (93.8 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
 Identities = 56/144 (38%), Positives = 83/144 (57%)

Query:   500 IGRVGRAERMG-LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSG 558
             + R+GR  R   + +++     EK       C++RG+ C NT+L +             G
Sbjct:   384 VHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE------------DG 431

Query:   559 TMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYEN 618
                 GC IW++E ++L EIEEHLN TI QV+  +++P DEFDGKV YGQKR   G +Y+ 
Sbjct:   432 ----GCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKG 487

Query:   619 HVTQMEPSVNKLSKLESKAQLIYL 642
             HV  + P+V +L+ LE +AQ  +L
Sbjct:   488 HVDILAPTVQELAALEKEAQTSFL 511


>UNIPROTKB|Q24731 [details] [associations]
            symbol:Ddx1 "ATP-dependent RNA helicase Ddx1" species:7244
            "Drosophila virilis" [GO:0001700 "embryonic development via the
            syncytial blastoderm" evidence=ISS] [GO:0003682 "chromatin binding"
            evidence=ISS] [GO:0003712 "transcription cofactor activity"
            evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033677
            "DNA/RNA helicase activity" evidence=ISS] [GO:0090305 "nucleic acid
            phosphodiester bond hydrolysis" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0001700 GO:GO:0003682 GO:GO:0004527 GO:GO:0006302
            GO:GO:0003712 PROSITE:PS51192 GO:GO:0004518 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0032508 GO:GO:0008143 GO:GO:0033677
            OrthoDB:EOG43FFBW EMBL:U34779 ProteinModelPortal:Q24731
            STRING:Q24731 FlyBase:FBgn0015207 InParanoid:Q24731 Uniprot:Q24731
        Length = 400

 Score = 431 (156.8 bits), Expect = 5.5e-92, Sum P(3) = 5.5e-92
 Identities = 81/107 (75%), Positives = 89/107 (83%)

Query:   368 DEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
             DEAD LLKQGY +LI+R+HKQIPKITSDG RLQMIVCSATLH F+VKKMAERLM+FPTW 
Sbjct:     2 DEADRLLKQGYTDLIERLHKQIPKITSDGCRLQMIVCSATLHAFEVKKMAERLMHFPTWG 61

Query:   428 DLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARP 474
             DLKGEDAVPETVHHVV  +DP  D +W +LR  I TDGVH  DN  P
Sbjct:    62 DLKGEDAVPETVHHVVCMVDPHTDSSWQQLRQPIHTDGVHDHDNVHP 108

 Score = 261 (96.9 bits), Expect = 5.5e-92, Sum P(3) = 5.5e-92
 Identities = 44/82 (53%), Positives = 65/82 (79%)

Query:   562 NGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYENHVT 621
             +G CIW++E  +L E+E+HLN+TIQQV   L++P ++FDGKVVYGQK +NMG+ YE+HV 
Sbjct:   282 SGSCIWYNEPNLLAEVEDHLNITIQQVVKSLDVPVNDFDGKVVYGQKNLNMGTGYEDHVE 341

Query:   622 QMEPSVNKLSKLESKAQLIYLK 643
             Q+ P+V K + LE ++Q ++LK
Sbjct:   342 QLGPTVRKQTDLELQSQSLFLK 363

 Score = 259 (96.2 bits), Expect = 5.5e-92, Sum P(3) = 5.5e-92
 Identities = 47/55 (85%), Positives = 51/55 (92%)

Query:   484 IINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCS 538
             +IN+TLPDDK+NYVHRIGRVGR E MGLAISLVSTVPEKVWYHGEWC TRGR+ S
Sbjct:   230 VINITLPDDKSNYVHRIGRVGRPESMGLAISLVSTVPEKVWYHGEWCKTRGRSGS 284

 Score = 47 (21.6 bits), Expect = 9.8e-70, Sum P(3) = 9.8e-70
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query:   470 DNARPGIDISGLPFIINMT-LPDDKANY 496
             D A  G+DI+GLPF  ++  L ++  N+
Sbjct:   198 DVAARGLDITGLPFSKDLKYLSENTLNF 225


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 246 (91.7 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
 Identities = 58/165 (35%), Positives = 102/165 (61%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA Q F  +  + K++  P ++  ++ GGV++K Q++ L  GVDI+V TP
Sbjct:    88 RALILTPTRELAVQVFECVRAYGKYL--P-LKATVVHGGVSIKPQINHLRRGVDILVATP 144

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL++ G L+L+   FFVLDEAD +L  G+   I R+ K +P+      R Q ++ S
Sbjct:   145 GRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE-----SR-QNLLFS 198

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT    ++K++ ++L++ P  +++   +     + HVV  +D Q+
Sbjct:   199 ATFSK-EIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQR 242

 Score = 145 (56.1 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +FE +G+  E+ +A+ E  ++ PT VQ +AIP+IL   DV++ A+TG+GKT  F LP++Q
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

 Score = 141 (54.7 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
 Identities = 33/63 (52%), Positives = 41/63 (65%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G++R  + TD V AR     G+DI  LP +IN  LPD   +YVHR+GR GRA   G+AIS
Sbjct:   305 GKIRVLVATD-VAAR-----GLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAIS 358

Query:   515 LVS 517
             LVS
Sbjct:   359 LVS 361


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 246 (91.7 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
 Identities = 58/165 (35%), Positives = 102/165 (61%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA Q F  +  + K++  P ++  ++ GGV++K Q++ L  GVDI+V TP
Sbjct:    88 RALILTPTRELAVQVFECVRAYGKYL--P-LKATVVHGGVSIKPQINHLRRGVDILVATP 144

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL++ G L+L+   FFVLDEAD +L  G+   I R+ K +P+      R Q ++ S
Sbjct:   145 GRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE-----SR-QNLLFS 198

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT    ++K++ ++L++ P  +++   +     + HVV  +D Q+
Sbjct:   199 ATFSK-EIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQR 242

 Score = 145 (56.1 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
 Identities = 27/60 (45%), Positives = 43/60 (71%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +FE +G+  E+ +A+ E  ++ PT VQ +AIP+IL   DV++ A+TG+GKT  F LP++Q
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

 Score = 141 (54.7 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
 Identities = 33/63 (52%), Positives = 41/63 (65%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G++R  + TD V AR     G+DI  LP +IN  LPD   +YVHR+GR GRA   G+AIS
Sbjct:   305 GKIRVLVATD-VAAR-----GLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAIS 358

Query:   515 LVS 517
             LVS
Sbjct:   359 LVS 361


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 215 (80.7 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 55/188 (29%), Positives = 102/188 (54%)

Query:   263 QNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322
             Q +  ++SAD SAG V+        +++ P+RELA+Q  +  + +       +++ +   
Sbjct:    69 QRLSEAKSADKSAGVVR-------CLVLVPTRELAQQVADSFLSYASHFNG-QLKIVAAF 120

Query:   323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLI 382
             GGV+V  QM  L +G D++V TPGR+ DL++   L LT    FVLDEAD +L  G+   +
Sbjct:   121 GGVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEEL 180

Query:   383 DRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442
             +++   +P+      + Q ++ SAT  + +V+ +  +L++ P    L+ E     T+   
Sbjct:   181 EQVLAALPR------QKQTLLFSATFPE-EVRALTTKLLHQPLEYHLQSEQE--STIEQR 231

Query:   443 VVKIDPQQ 450
             V+ ++ +Q
Sbjct:   232 VITVNREQ 239

 Score = 165 (63.1 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +A+F E+G++  +G  + E+ ++ PT VQA  IP +L G DVL  A TGSGKT AF LP+
Sbjct:     8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67

Query:    61 IQIVCE 66
             +Q + E
Sbjct:    68 LQRLSE 73

 Score = 142 (55.0 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  GIDI  LP +IN  LP   A+Y+HRIGR GRA   GLA++L+S    + ++H 
Sbjct:   309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLIS---HEEYHHF 365

Query:   528 EWCATRGR-NCSNTQLTDVKGNSQVPIFLLS 557
                  + +      Q+   + N+++P+ +L+
Sbjct:   366 GVIEKKNKIKLVREQIPGFEANAEIPLEVLA 396


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 215 (80.7 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 55/188 (29%), Positives = 102/188 (54%)

Query:   263 QNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322
             Q +  ++SAD SAG V+        +++ P+RELA+Q  +  + +       +++ +   
Sbjct:    69 QRLSEAKSADKSAGVVR-------CLVLVPTRELAQQVADSFLSYASHFNG-QLKIVAAF 120

Query:   323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLI 382
             GGV+V  QM  L +G D++V TPGR+ DL++   L LT    FVLDEAD +L  G+   +
Sbjct:   121 GGVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEEL 180

Query:   383 DRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442
             +++   +P+      + Q ++ SAT  + +V+ +  +L++ P    L+ E     T+   
Sbjct:   181 EQVLAALPR------QKQTLLFSATFPE-EVRALTTKLLHQPLEYHLQSEQE--STIEQR 231

Query:   443 VVKIDPQQ 450
             V+ ++ +Q
Sbjct:   232 VITVNREQ 239

 Score = 165 (63.1 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +A+F E+G++  +G  + E+ ++ PT VQA  IP +L G DVL  A TGSGKT AF LP+
Sbjct:     8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67

Query:    61 IQIVCE 66
             +Q + E
Sbjct:    68 LQRLSE 73

 Score = 142 (55.0 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  GIDI  LP +IN  LP   A+Y+HRIGR GRA   GLA++L+S    + ++H 
Sbjct:   309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLIS---HEEYHHF 365

Query:   528 EWCATRGR-NCSNTQLTDVKGNSQVPIFLLS 557
                  + +      Q+   + N+++P+ +L+
Sbjct:   366 GVIEKKNKIKLVREQIPGFEANAEIPLEVLA 396


>WB|WBGene00017620 [details] [associations]
            symbol:F20A1.9 species:6239 "Caenorhabditis elegans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR003877 InterPro:IPR007421 Pfam:PF00622 Pfam:PF04326
            GO:GO:0005524 GO:GO:0009792 InterPro:IPR008985 SUPFAM:SSF49899
            InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
            GeneTree:ENSGT00660000095174 EMBL:FO080766 PIR:T30040
            RefSeq:NP_504786.2 ProteinModelPortal:Q19614 SMR:Q19614
            STRING:Q19614 PaxDb:Q19614 EnsemblMetazoa:F20A1.9 GeneID:179089
            KEGG:cel:CELE_F20A1.9 UCSC:F20A1.9 CTD:179089 WormBase:F20A1.9
            eggNOG:NOG263681 InParanoid:Q19614 NextBio:903872 Uniprot:Q19614
        Length = 433

 Score = 395 (144.1 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 76/177 (42%), Positives = 106/177 (59%)

Query:    91 LSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWST 150
             L+  D+D  + I   GL C+S  +K W G R   G+YG GKYYYE T+T +GLCRVGW+T
Sbjct:    11 LNKQDQDLHLEIDETGLACKSEVKKRWLGARGTAGLYGNGKYYYEVTITSKGLCRVGWAT 70

Query:   151 SQAVXXXXXXXXXXXXXXXXKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQH 210
                                  KS +K+FD+YG  F ++DVIGC LDLD+ T+ ++KNG+ 
Sbjct:    71 LGGSLNIGKGLDSFGYGGTGMKSTHKKFDDYGLPFTLNDVIGCYLDLDSRTIWWSKNGEQ 130

Query:   211 LGLAFNISQQLKNS--AFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNV 265
                AF+I  + KNS    +PAV+ +N+ +S NFG+ PFK  P   + AV +AP +NV
Sbjct:   131 FPAAFSIDVKYKNSNTCLFPAVLCQNSSLSVNFGSQPFKFPPGNQFTAVSDAPNENV 187


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 226 (84.6 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
 Identities = 58/161 (36%), Positives = 91/161 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA Q    +  + K++    IR L++ GGV++  QM  L  GVD++V TP
Sbjct:    77 RALILTPTRELAAQIGENVRDYSKYLN---IRSLVVFGGVSINPQMMKLRGGVDVLVATP 133

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL     + L      VLDEAD +L  G+ + I R+  ++P      KR Q ++ S
Sbjct:   134 GRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP-----AKR-QNLLFS 187

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLK----GEDAVPETVHHV 442
             AT  D D+K +AE+L++ P  +++       D V + VH V
Sbjct:   188 ATFSD-DIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFV 227

 Score = 146 (56.5 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
 Identities = 26/60 (43%), Positives = 43/60 (71%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+ +G+ P+I +AV E  +  PT +Q +AIP +L G D++ +A+TG+GKT  F LP++Q
Sbjct:     2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

 Score = 124 (48.7 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
 Identities = 27/56 (48%), Positives = 34/56 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             A D A  G+DI  LP ++N  LP+   +YVHRIGR GRA   G A+SLV     K+
Sbjct:   301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 223 (83.6 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
 Identities = 54/162 (33%), Positives = 92/162 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+++ P+RELA+Q       + +F TD  I   +  GGV+ K Q+S L  GVDI++ TP
Sbjct:    78 RALVLTPTRELAQQVHKSFCHYGQF-TDVTIG--IAYGGVSTKKQISELKVGVDILIATP 134

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL+    +SL++    V DEAD +L  G+   ID++ + +PK        Q ++ S
Sbjct:   135 GRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK------QTLLFS 188

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
             AT  D D+ KM++ ++  P  V++  ++   + V  +V  +D
Sbjct:   189 ATFAD-DIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVD 229

 Score = 140 (54.3 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
 Identities = 36/70 (51%), Positives = 44/70 (62%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G++R+ I TD V AR     GIDI GL  +IN  LP +  +YVHRIGR  RA   GLA+S
Sbjct:   295 GKVRALIATD-VAAR-----GIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVS 348

Query:   515 LVSTVPEKVW 524
             LVS  P + W
Sbjct:   349 LVS--PGEEW 356

 Score = 127 (49.8 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query:    15 KAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             KA+ E  +  PT++Q ++IPLIL   DV+  A+TG+GKT AF LPI+Q
Sbjct:    18 KAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 223 (83.6 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
 Identities = 54/162 (33%), Positives = 92/162 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+++ P+RELA+Q       + +F TD  I   +  GGV+ K Q+S L  GVDI++ TP
Sbjct:    78 RALVLTPTRELAQQVHKSFCHYGQF-TDVTIG--IAYGGVSTKKQISELKVGVDILIATP 134

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL+    +SL++    V DEAD +L  G+   ID++ + +PK        Q ++ S
Sbjct:   135 GRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK------QTLLFS 188

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
             AT  D D+ KM++ ++  P  V++  ++   + V  +V  +D
Sbjct:   189 ATFAD-DIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVD 229

 Score = 140 (54.3 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
 Identities = 36/70 (51%), Positives = 44/70 (62%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G++R+ I TD V AR     GIDI GL  +IN  LP +  +YVHRIGR  RA   GLA+S
Sbjct:   295 GKVRALIATD-VAAR-----GIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVS 348

Query:   515 LVSTVPEKVW 524
             LVS  P + W
Sbjct:   349 LVS--PGEEW 356

 Score = 127 (49.8 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query:    15 KAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             KA+ E  +  PT++Q ++IPLIL   DV+  A+TG+GKT AF LPI+Q
Sbjct:    18 KAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65


>UNIPROTKB|Q9KLE2 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
            process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 258 (95.9 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
 Identities = 70/182 (38%), Positives = 101/182 (55%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             PQAI++ P+RELA Q   +I    + I   K+ E  I GG ++ DQM  L SG  IVVGT
Sbjct:    95 PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLE--IYGGASILDQMRALKSGAHIVVGT 152

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR++DLI+   L L  C  F+LDEAD +LK G+ + +  + +Q P+        Q ++ 
Sbjct:   153 PGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESA------QRVLF 206

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--HVVVKIDPQQDETWGRLRSHIQ 462
             SAT+    VK++ ER +  P  VD+ G +     V   + VVK   ++DE   RL    +
Sbjct:   207 SATMPPM-VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVK-GVEKDEAMARLLETEE 264

Query:   463 TD 464
             TD
Sbjct:   265 TD 266

 Score = 129 (50.5 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F ++ +   I  A+ EM ++ PT +QA AIP++L G D L  A+TG+GKT AF LP++
Sbjct:    28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

 Score = 110 (43.8 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D    G+D+  +  + N  +P D  +Y+HRIGR GRA R G AI LV T
Sbjct:   321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRT 371

 Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query:   324 GVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH 356
             GV VKD +  L++ + +  G+ G ++  ++ GH
Sbjct:   514 GVQVKDIVGALANELGLTKGSIGAIK--LAQGH 544


>TIGR_CMR|VC_A0804 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 258 (95.9 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
 Identities = 70/182 (38%), Positives = 101/182 (55%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             PQAI++ P+RELA Q   +I    + I   K+ E  I GG ++ DQM  L SG  IVVGT
Sbjct:    95 PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLE--IYGGASILDQMRALKSGAHIVVGT 152

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR++DLI+   L L  C  F+LDEAD +LK G+ + +  + +Q P+        Q ++ 
Sbjct:   153 PGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESA------QRVLF 206

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--HVVVKIDPQQDETWGRLRSHIQ 462
             SAT+    VK++ ER +  P  VD+ G +     V   + VVK   ++DE   RL    +
Sbjct:   207 SATMPPM-VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVK-GVEKDEAMARLLETEE 264

Query:   463 TD 464
             TD
Sbjct:   265 TD 266

 Score = 129 (50.5 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F ++ +   I  A+ EM ++ PT +QA AIP++L G D L  A+TG+GKT AF LP++
Sbjct:    28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85

 Score = 110 (43.8 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D    G+D+  +  + N  +P D  +Y+HRIGR GRA R G AI LV T
Sbjct:   321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRT 371

 Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query:   324 GVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH 356
             GV VKD +  L++ + +  G+ G ++  ++ GH
Sbjct:   514 GVQVKDIVGALANELGLTKGSIGAIK--LAQGH 544


>UNIPROTKB|Q5L3G9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
            ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
            KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
            BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
        Length = 467

 Score = 211 (79.3 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
 Identities = 56/160 (35%), Positives = 90/160 (56%)

Query:   278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
             V + N+A QA+++ P+RELA Q   ++ K        ++R L I GG +++ Q+  L   
Sbjct:    64 VNVKNSAVQALVVAPTRELAIQVSEELYKIGAV---KRVRVLPIYGGQDIERQIRALKKH 120

Query:   338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397
               ++VGTPGR+ D I+ G L L H    VLDEAD +L  G+   I+ +   +P      +
Sbjct:   121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP-----AE 175

Query:   398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED-AVP 436
             R Q ++ SAT+ D  ++++AER M  P  V +K ++  VP
Sbjct:   176 R-QTLLFSATMPD-PIRRIAERFMNEPELVKVKAKEMTVP 213

 Score = 142 (55.0 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F+E+G+  E+ KA+E M +   T +QA+ IPL L   DV+  A+TG+GKT AF +PI
Sbjct:     1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query:    61 IQIV 64
             ++ V
Sbjct:    61 VEKV 64

 Score = 136 (52.9 bits), Expect = 3.6e-34, Sum P(3) = 3.6e-34
 Identities = 41/123 (33%), Positives = 63/123 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVW--Y 525
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A++ V+  P ++   +
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVT--PREIGQLH 353

Query:   526 HGEWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEI-EEHLN 582
             H E    R          D  ++G  ++ I  L   +      ++  KR   E+ EEH +
Sbjct:   354 HIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFY--KRAAEELLEEHDS 411

Query:   583 VTI 585
             VTI
Sbjct:   412 VTI 414


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 213 (80.0 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
 Identities = 54/181 (29%), Positives = 94/181 (51%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +++ P+RELA Q       FK +  D K     I GGV +  Q+  +S GVD++V  
Sbjct:    80 PRVLVLTPTRELAAQVHES---FKLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVAC 136

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL   G + L+H    VLDEAD +L  G+ + + ++  ++P      KR Q ++ 
Sbjct:   137 PGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP-----AKR-QNLLF 190

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTD 464
             SAT  + D+  +A +L++ P  +++   +   E +   V ++      +   L +H+ T 
Sbjct:   191 SATFSN-DITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRS---LLAHLITV 246

Query:   465 G 465
             G
Sbjct:   247 G 247

 Score = 141 (54.7 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F  +G+   + +A+E   +  PT VQ  AIP +L G D+++AA+TG+GKTG F LPI++
Sbjct:     2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

 Score = 138 (53.6 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
 Identities = 30/56 (53%), Positives = 37/56 (66%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             A D A  G+DI  LP ++N  LP+   +YVHRIGR GRA R G AISLV+   EK+
Sbjct:   305 ATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

 Score = 39 (18.8 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   255 IAVCNAPKQNVKHSESADVSAGPVKLV 281
             +A+     QN +    AD  AG V+++
Sbjct:   277 VAIHGNKSQNARTKALADFKAGDVRIM 303


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 206 (77.6 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
 Identities = 54/163 (33%), Positives = 84/163 (51%)

Query:   272 DVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM 331
             D+S+G      N    +++ P+RELA+Q  + I  +       +I+ L + GGV+V  QM
Sbjct:    73 DISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNG-EIKTLAVFGGVSVNIQM 131

Query:   332 SVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
               L  GVDI+V TPGR+ DLIS   + L   +  VLDEAD +L  G+   +  +    PK
Sbjct:   132 LALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPK 191

Query:   392 ITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA 434
                   + Q ++ SAT  +  V  + + L+  P  + L+  DA
Sbjct:   192 ------KKQTLLFSATFPE-QVTTLTQELLNNPIEIQLQSADA 227

 Score = 140 (54.3 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query:     2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             A F E+G++  +   + E+++  PT +QA AIP +  G D++  A TGSGKT  F LP++
Sbjct:     8 ATFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPML 67

Query:    62 QIVCETLKEIXXXXXXXXXXXXVISPT 88
             Q + E +               V+ PT
Sbjct:    68 QKLREDISSGSKNSKGNFVTGLVLVPT 94

 Score = 133 (51.9 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D A  G+DI  LP +IN  LP   ++Y+HRIGR GRA  +GLAISL+
Sbjct:   311 ATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLI 359


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 210 (79.0 bits), Expect = 7.5e-33, Sum P(3) = 7.5e-33
 Identities = 55/174 (31%), Positives = 92/174 (52%)

Query:   277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
             P + + +  + +I+ P+RELA Q    +  + K++       L I GGV V+ Q   L  
Sbjct:    67 PSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLN---FSVLTIYGGVKVETQAQKLKR 123

Query:   337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396
             G DI+V TPGR+ + ++  +LSL+   F VLDEAD +L  G+   I ++ + + K     
Sbjct:   124 GADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNK----- 178

Query:   397 KRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             KR Q ++ SAT     VKK+A  +M  P  +    ++   +TV  VV  ++ ++
Sbjct:   179 KR-QNLLFSATFSSA-VKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRR 230

 Score = 141 (54.7 bits), Expect = 7.5e-33, Sum P(3) = 7.5e-33
 Identities = 30/67 (44%), Positives = 41/67 (61%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FE     PEI +A+ +  +   T +Q +AIP I  G DVL +A+TG+GKT AF LPI+Q 
Sbjct:     3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query:    64 VCETLKE 70
             + E   E
Sbjct:    63 MVENPSE 69

 Score = 123 (48.4 bits), Expect = 7.5e-33, Sum P(3) = 7.5e-33
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A + A  G+DI  L +++N  LP    +YVHRIGR GRA + G+AIS VS   E+
Sbjct:   300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 209 (78.6 bits), Expect = 7.8e-33, Sum P(3) = 7.8e-33
 Identities = 53/181 (29%), Positives = 93/181 (51%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +++ P+RELA Q  +    FK +  D K     I GGV +  Q+  ++ GVD++V  
Sbjct:    80 PRVLVLTPTRELAAQVHDS---FKLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVAC 136

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL   G + L+H    VLDEAD +L  G+ + + ++  ++P      KR Q ++ 
Sbjct:   137 PGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP-----AKR-QNLLF 190

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTD 464
             SAT    D+  +A +L++ P  +++   +   E +   V ++          L +H+ T 
Sbjct:   191 SATFSK-DITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRA---LLAHLITA 246

Query:   465 G 465
             G
Sbjct:   247 G 247

 Score = 138 (53.6 bits), Expect = 7.8e-33, Sum P(3) = 7.8e-33
 Identities = 30/56 (53%), Positives = 37/56 (66%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             A D A  G+DI  LP ++N  LP+   +YVHRIGR GRA R G AISLV+   EK+
Sbjct:   305 ATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

 Score = 137 (53.3 bits), Expect = 7.8e-33, Sum P(3) = 7.8e-33
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F  +G+   +  A+E   +  PT VQ  AIP +L G D+++AA+TG+GKTG F LPI++
Sbjct:     2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

 Score = 39 (18.8 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   255 IAVCNAPKQNVKHSESADVSAGPVKLV 281
             +A+     QN +    AD  AG V+++
Sbjct:   277 VAIHGNKSQNARTKALADFKAGEVRIL 303


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 195 (73.7 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
 Identities = 51/175 (29%), Positives = 94/175 (53%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             ++ GP K+  N  +A+I+ P+RELA Q  + ++ + + +  P ++  ++ GGV +  QM 
Sbjct:    63 LAKGP-KVRANQVRALILTPTRELAAQIQDNVMLYGRHL--P-LKSAVVFGGVKINPQMQ 118

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392
              +  G DI+V TPGR+ DL +   +        VLDEAD +L  G+   I ++ K +P+ 
Sbjct:   119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE- 177

Query:   393 TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
                 KR Q ++ SAT    +++++A+ L+  P  + +   ++   TV   +   D
Sbjct:   178 ----KR-QNLLFSATFST-EIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD 226

 Score = 146 (56.5 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
 Identities = 27/63 (42%), Positives = 43/63 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F  +G+   I KA+EE  +  P+ +Q +AIP +L G DV+ AA+TG+GKT  F LPI+++
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:    64 VCE 66
             + +
Sbjct:    63 LAK 65

 Score = 134 (52.2 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
 Identities = 31/56 (55%), Positives = 36/56 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV--PE 521
             A D A  GIDI  LP ++N  LP    +YVHRIGR GRA  +G AISLVS +  PE
Sbjct:   299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 195 (73.7 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
 Identities = 51/175 (29%), Positives = 94/175 (53%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             ++ GP K+  N  +A+I+ P+RELA Q  + ++ + + +  P ++  ++ GGV +  QM 
Sbjct:    63 LAKGP-KVRANQVRALILTPTRELAAQIQDNVMLYGRHL--P-LKSAVVFGGVKINPQMQ 118

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392
              +  G DI+V TPGR+ DL +   +        VLDEAD +L  G+   I ++ K +P+ 
Sbjct:   119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE- 177

Query:   393 TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
                 KR Q ++ SAT    +++++A+ L+  P  + +   ++   TV   +   D
Sbjct:   178 ----KR-QNLLFSATFST-EIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD 226

 Score = 146 (56.5 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
 Identities = 27/63 (42%), Positives = 43/63 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F  +G+   I KA+EE  +  P+ +Q +AIP +L G DV+ AA+TG+GKT  F LPI+++
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:    64 VCE 66
             + +
Sbjct:    63 LAK 65

 Score = 134 (52.2 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
 Identities = 31/56 (55%), Positives = 36/56 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV--PE 521
             A D A  GIDI  LP ++N  LP    +YVHRIGR GRA  +G AISLVS +  PE
Sbjct:   299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 204 (76.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
 Identities = 51/172 (29%), Positives = 91/172 (52%)

Query:   279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV 338
             K  +   +A+++ P+RELA Q    +  + K++  P +R  ++ GGV +  Q++ L  GV
Sbjct:    68 KAKSGQTRALVLTPTRELAAQVGESVETYGKYL--P-LRSAVVFGGVPINPQINKLRHGV 124

Query:   339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
             D++V TPGR+ DL+    +        VLDEAD +L  G+   I ++   +P      KR
Sbjct:   125 DVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP-----AKR 179

Query:   399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              Q ++ SAT  D +++++A+ L+  P  + +   +A   TV   +  +D  Q
Sbjct:   180 -QNLMFSATFSD-EIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQ 229

 Score = 144 (55.7 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
 Identities = 26/64 (40%), Positives = 44/64 (68%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F  +G+   + KAV E  +  P+ +QA+AIP +L G DV+ AA+TG+GKT  F LP+++
Sbjct:     2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query:    63 IVCE 66
             ++ +
Sbjct:    62 LLAK 65

 Score = 128 (50.1 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D A  G+DI  LP ++N  LP+   +YVHRIGR GRA   G A+SLVS+
Sbjct:   299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSS 349

 Score = 42 (19.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query:   328 KDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLT-HCRFFVLDEADGLLKQGYGNLIDRMH 386
             KD M+   +G     G    + +L++ GH + +   R  VL     L  Q  G  ++   
Sbjct:    39 KDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTRALVLTPTRELAAQ-VGESVETYG 97

Query:   387 KQIP 390
             K +P
Sbjct:    98 KYLP 101

 Score = 40 (19.1 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query:   256 AVCNAPKQNVKHSESADVSAGPVKLVNNA 284
             AV  +PK   KH +    +A      NNA
Sbjct:   446 AVARSPKPKSKHPQRDGGTANSATAGNNA 474

 Score = 39 (18.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLI 36
             E+ V P    A     W+ P D   ++  LI
Sbjct:   205 EISVTPRNAAATTVKQWICPVDKTQKSALLI 235


>UNIPROTKB|Q8EGU0 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 216 (81.1 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
 Identities = 53/165 (32%), Positives = 95/165 (57%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+++ P+RELA Q    I K+ +F+  P ++ L + GG N+  Q   +  GVDI+V TP
Sbjct:    74 RALVMTPTRELAIQVCANIQKYSQFL--P-LKTLAVYGGANMNPQRKGVEQGVDILVATP 130

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I   +L L+     V+DEAD +L  G+   I+++ + I  +       Q ++ S
Sbjct:   131 GRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH------QTMLFS 184

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT  D  VK+++ +++  P WV++  E+    TV  +V ++D ++
Sbjct:   185 ATYSDA-VKQLSHKMLNQPQWVNV-AENTTASTVEQLVYRVDKRR 227

 Score = 131 (51.2 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
 Identities = 33/69 (47%), Positives = 42/69 (60%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G+LR  + TD V AR     G+DI  LP +IN+ LP    +YVHRIGR GRA   G AIS
Sbjct:   290 GKLRVLVATD-VAAR-----GLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAIS 343

Query:   515 LVSTVPEKV 523
              VS   +++
Sbjct:   344 FVSPADDEM 352

 Score = 120 (47.3 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+ +G+   +  A+ E  +   T VQ + IPL L G D++  A+TG+GKT AF LP+++
Sbjct:     3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61


>TIGR_CMR|SO_1501 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 216 (81.1 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
 Identities = 53/165 (32%), Positives = 95/165 (57%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+++ P+RELA Q    I K+ +F+  P ++ L + GG N+  Q   +  GVDI+V TP
Sbjct:    74 RALVMTPTRELAIQVCANIQKYSQFL--P-LKTLAVYGGANMNPQRKGVEQGVDILVATP 130

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I   +L L+     V+DEAD +L  G+   I+++ + I  +       Q ++ S
Sbjct:   131 GRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH------QTMLFS 184

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT  D  VK+++ +++  P WV++  E+    TV  +V ++D ++
Sbjct:   185 ATYSDA-VKQLSHKMLNQPQWVNV-AENTTASTVEQLVYRVDKRR 227

 Score = 131 (51.2 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
 Identities = 33/69 (47%), Positives = 42/69 (60%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G+LR  + TD V AR     G+DI  LP +IN+ LP    +YVHRIGR GRA   G AIS
Sbjct:   290 GKLRVLVATD-VAAR-----GLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAIS 343

Query:   515 LVSTVPEKV 523
              VS   +++
Sbjct:   344 FVSPADDEM 352

 Score = 120 (47.3 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+ +G+   +  A+ E  +   T VQ + IPL L G D++  A+TG+GKT AF LP+++
Sbjct:     3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 206 (77.6 bits), Expect = 8.0e-32, Sum P(3) = 8.0e-32
 Identities = 52/167 (31%), Positives = 91/167 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA Q      K+ K++   K+   L+IGGV+ K+Q ++L  GVD+++ T
Sbjct:    76 PRCLILCPTRELAAQVAENFEKYGKYL---KLTMALLIGGVSFKEQETLLQRGVDVLIAT 132

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D    G L +      ++DEAD +L  G+   I+++  ++P       R Q ++ 
Sbjct:   133 PGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLP-----ANR-QTLLF 186

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD 451
             SAT    D++++A+     P  +++       ET+   VVK+ P  D
Sbjct:   187 SATFPT-DIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKL-PTND 231

 Score = 152 (58.6 bits), Expect = 8.0e-32, Sum P(3) = 8.0e-32
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F + G+   I KAV E  + +PT +Q EAIP IL GGDV   A+TG+GKT AF LP+IQ
Sbjct:     6 FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64

 Score = 113 (44.8 bits), Expect = 8.0e-32, Sum P(3) = 8.0e-32
 Identities = 34/96 (35%), Positives = 48/96 (50%)

Query:   431 GEDAVPETVHHVVVKIDPQ--QDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMT 488
             G DA P  +H  +    PQ  + ET  R R   +   + A D A  G+DI  +  + N  
Sbjct:   272 GHDAAP--IHGDL----PQSVRSETLQRFRDG-KLKLLVASDVAARGLDIPDVGHVFNFG 324

Query:   489 LPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVW 524
              P    +YVHRIGR GRA R G + ++V+   +K W
Sbjct:   325 PPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSW 360


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 211 (79.3 bits), Expect = 8.4e-32, Sum P(3) = 8.4e-32
 Identities = 57/192 (29%), Positives = 100/192 (52%)

Query:   275 AGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL 334
             + P +     P+ +++ P+RELA+Q  + +  +  F+   ++R   I+GG+    Q+ +L
Sbjct:    64 SSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFM---RVRSGAILGGMPYHAQLRLL 120

Query:   335 SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS 394
             S+ VD +V TPGR+ DL+    L L+     VLDEAD +L  G+ + +DR+    P    
Sbjct:   121 SAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATR- 179

Query:   395 DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH-HVVVKIDPQQD-E 452
                  Q ++ +AT+ D  + ++A RL+  P  +D+ G     +T H H+  ++    D  
Sbjct:   180 -----QTLLFTATM-DSAMARLAGRLLREPERIDIAGT----KTTHEHIEQRLHVADDLH 229

Query:   453 TWGRLRSHIQTD 464
                RL  H+ TD
Sbjct:   230 HKNRLLRHLITD 241

 Score = 127 (49.8 bits), Expect = 8.4e-32, Sum P(3) = 8.4e-32
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F E+ + P I KAV    +  PT VQA A+P  L   D+L  A+TG+GKT AF LP +Q
Sbjct:     3 FAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61

 Score = 127 (49.8 bits), Expect = 8.4e-32, Sum P(3) = 8.4e-32
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             GR+R  + TD V AR     G+D++G+  +IN  LP    +YVHRIGR GRA   G+AIS
Sbjct:   293 GRIRLLVATD-VAAR-----GLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAIS 346

Query:   515 LVS 517
               S
Sbjct:   347 FAS 349


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 199 (75.1 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
 Identities = 49/172 (28%), Positives = 94/172 (54%)

Query:   279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV 338
             K+ +N  +A+I+ P+RELA Q    I  + K++    +  +++ GGV +  Q++ L  GV
Sbjct:    75 KVSSNNVRALILTPTRELAAQISESIEVYGKYLN---LHSMVVFGGVKINPQIARLRQGV 131

Query:   339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
             D++V TPGR+ DL +   +  +    F+LDEAD +L  G+   I ++   +PK      R
Sbjct:   132 DVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPK-----DR 186

Query:   399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              Q ++ SAT    +++ +A+ ++  P  + +  E++  E V   +  +D ++
Sbjct:   187 -QNLLFSATFSP-EIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKR 236

 Score = 139 (54.0 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F ++G+   + KAV +  +  P+ +QA+AIP ++ G DV+ AA+TG+GKT  F LP++Q
Sbjct:     8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQ 66

 Score = 117 (46.2 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
 Identities = 26/49 (53%), Positives = 31/49 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D A  GIDI  LP ++N  LP+   +YVHRIGR  RA   G A+SLV
Sbjct:   306 ATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLV 354


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 200 (75.5 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
 Identities = 55/182 (30%), Positives = 93/182 (51%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A++I P+RELAEQ  +  +   +     ++R + + GGV V  Q+  L +G ++VV  P
Sbjct:    72 RALVIAPTRELAEQINDSFVTLGR---QTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+ G + L+     VLDEAD +   G+   I R+ K +P       R Q ++ S
Sbjct:   129 GRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPP------RRQTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ-QDETWGRLRSHIQTD 464
             AT+   D++ +A+ ++  P  V + G  A   TV H +  ++   +      L  H  T+
Sbjct:   183 ATM-PIDIRTLAQDILVDPVTVQV-GTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTE 240

Query:   465 GV 466
              V
Sbjct:   241 SV 242

 Score = 131 (51.2 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F+  G  P +   +    +  PT +QA+AIP ++ G DV+  A+TG+GKT AF LPI+
Sbjct:     3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60

 Score = 121 (47.7 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D A  GID+S +  +IN  +PD    Y+HRIGR GRA R G A +LV++
Sbjct:   295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTS 345


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 198 (74.8 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
 Identities = 52/164 (31%), Positives = 90/164 (54%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A +A+++ P+RELA Q     +K+ K  TD  IR  +  GGV+++ Q +V ++G+D+++ 
Sbjct:    75 AIRALVLVPTRELALQVQQSFVKYAKG-TD--IRVGIAYGGVSIEAQQAVFNAGIDVLIA 131

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D +  G L+L      V DEAD +L  G+ + I  + KQ+P      +R Q ++
Sbjct:   132 TPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP-----AQR-QTLL 185

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
              SATL D  +   ++ L+  P  +++   +     +   V  ID
Sbjct:   186 FSATLDD-SIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAID 228

 Score = 129 (50.5 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F  + +  ++   + E+ +  PT +Q EAIP IL   DV+  A+TG+GKT AF LPI+Q
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:    63 IV 64
             ++
Sbjct:    62 LL 63

 Score = 121 (47.7 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI+ L ++IN  LP    +Y+HRIGR GRA   GLAI+L S
Sbjct:   301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFS 350


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 198 (74.8 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
 Identities = 52/164 (31%), Positives = 90/164 (54%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A +A+++ P+RELA Q     +K+ K  TD  IR  +  GGV+++ Q +V ++G+D+++ 
Sbjct:    75 AIRALVLVPTRELALQVQQSFVKYAKG-TD--IRVGIAYGGVSIEAQQAVFNAGIDVLIA 131

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D +  G L+L      V DEAD +L  G+ + I  + KQ+P      +R Q ++
Sbjct:   132 TPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP-----AQR-QTLL 185

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
              SATL D  +   ++ L+  P  +++   +     +   V  ID
Sbjct:   186 FSATLDD-SIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAID 228

 Score = 129 (50.5 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F  + +  ++   + E+ +  PT +Q EAIP IL   DV+  A+TG+GKT AF LPI+Q
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:    63 IV 64
             ++
Sbjct:    62 LL 63

 Score = 121 (47.7 bits), Expect = 3.6e-30, Sum P(3) = 3.6e-30
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI+ L ++IN  LP    +Y+HRIGR GRA   GLAI+L S
Sbjct:   301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFS 350


>UNIPROTKB|Q11039 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A homolog"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
            RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
            PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
            EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
            GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
            PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
            ProtClustDB:CLSK791051 Uniprot:Q11039
        Length = 563

 Score = 206 (77.6 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
 Identities = 50/174 (28%), Positives = 94/174 (54%)

Query:   278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
             + + +  PQA+++ P+RELA Q      ++  +++  ++  L I GG +   Q++ L  G
Sbjct:    75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLS--QLNVLPIYGGSSYAVQLAGLRRG 132

Query:   338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397
               +VVGTPGRM D +    L L+   F VLDEAD +L  G+ + ++R+  + P+      
Sbjct:   133 AQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK---- 188

Query:   398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD 451
               Q+ + SAT+    ++K++ + ++ P  V  K + AV E +    +++  + D
Sbjct:   189 --QVALFSATMPPA-IRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMD 239

 Score = 129 (50.5 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
 Identities = 24/68 (35%), Positives = 43/68 (63%)

Query:     2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             A F ++ + P + +A+ ++ +  PT +QA  IP ++ G DV+  A+TG+GKT AF +P++
Sbjct:    13 ATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML 72

Query:    62 QIVCETLK 69
               +  T K
Sbjct:    73 SKIDITSK 80

 Score = 121 (47.7 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query:   449 QQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508
             Q++ T   LR     D + A D A  G+D+  +  ++N  +P D  +YVHRIGR GRA R
Sbjct:   288 QRERTITALRDG-DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGR 346

Query:   509 MGLAISLVS 517
              G A+  VS
Sbjct:   347 SGAALIFVS 355


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 196 (74.1 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
 Identities = 54/186 (29%), Positives = 97/186 (52%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+++++ P+RELA Q       + K +   K+ + L+IGGV+ K+Q +++  GVD+++ T
Sbjct:    74 PRSLVLCPTRELAAQVAENFDTYTKHL---KLTKALLIGGVSFKEQDALIDRGVDVLIAT 130

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D    G L LT  +  V+DEAD +L  G+   I+R+    P  T      Q +  
Sbjct:   131 PGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTP-FTR-----QTLFF 184

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV-----KIDPQQDETWGRLRS 459
             SAT+   +++++    +  P  +++  +    ET+   VV     + D +  E    LR+
Sbjct:   185 SATMAP-EIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRA 243

Query:   460 HIQTDG 465
              I  +G
Sbjct:   244 LIDAEG 249

 Score = 146 (56.5 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+ + P++ KA+EE  +  PT +QA AIP  L G DVL  A+TG+GKT +F LP+
Sbjct:     1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query:    61 IQIV 64
             I ++
Sbjct:    61 ITLL 64

 Score = 108 (43.1 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  G+D+  +  + N  +P    +YVHRIGR GRA R G AI+L     EK
Sbjct:   308 ASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEK 362


>DICTYBASE|DDB_G0269192 [details] [associations]
            symbol:tifA "eukaryotic translation initiation factor
            4A" species:44689 "Dictyostelium discoideum" [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
            "translational initiation" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
            "translation initiation factor activity" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
            SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
            KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
        Length = 405

 Score = 228 (85.3 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 60/192 (31%), Positives = 103/192 (53%)

Query:   269 ESADVSAGPVKLVN---NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV 325
             ++A  S G ++ V     +PQ +I+ P+RELA+Q     +   +F+    I+    +GG 
Sbjct:    82 KTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMN---IQVHACVGGK 138

Query:   326 NVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRM 385
             N+ D +  L +GV IV GTPGR+ D+I+   L   H +  +LDEAD +L  G+   I+ +
Sbjct:   139 NLSDDVKKLETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDV 198

Query:   386 HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK 445
             ++ +P  T      Q+++ SATL   DV  M E+ M  P  + LK ++   + +    V 
Sbjct:   199 YRYLPNGT------QIVLVSATLTQ-DVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVS 251

Query:   446 IDPQQDETWGRL 457
             ++ ++D  +G L
Sbjct:   252 VE-KEDWKFGTL 262

 Score = 116 (45.9 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             GID+  +  +IN  LP D+ NY+HRIGR GR  R G+AI+ V
Sbjct:   334 GIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFV 375

 Score = 92 (37.4 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FE MG+  E+ + +    +  P+ +Q  AI  I+ G D +  A++G+GKT  F +  +Q 
Sbjct:    34 FESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQC 93

Query:    64 V 64
             V
Sbjct:    94 V 94


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 183 (69.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 50/170 (29%), Positives = 89/170 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q +I+ P+RELA Q  +++ K  K++   K+R L + GG  ++ Q+  L  GV+++VGTP
Sbjct:    71 QVLIVTPTRELALQVADEVAKLGKYL---KVRALAVYGGQAIERQIRGLRQGVEVIVGTP 127

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I          +  +LDEAD +L  G+   ID +   +  +T+   R Q ++ S
Sbjct:   128 GRILDHIGRKTFPAAEIKIVILDEADEMLDMGF---IDDIEAILNTLTN---RQQTLLFS 181

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWG 455
             ATL    +K + ++ +     V L G +     +  V  ++ P+ ++  G
Sbjct:   182 ATL-PAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYEL-PETEKIEG 229

 Score = 143 (55.4 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F+++G++  + KAV ++ + +PT +Q EAIPLIL G +++  A TG+GKT A+ LP+
Sbjct:     1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60

Query:    61 IQ 62
             +Q
Sbjct:    61 LQ 62

 Score = 120 (47.3 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             +T+ + A D A  G+DI  +  +IN  +P +  +Y+HRIGR GRA R G AI+L++
Sbjct:   289 KTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN 344


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 183 (69.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 50/170 (29%), Positives = 89/170 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q +I+ P+RELA Q  +++ K  K++   K+R L + GG  ++ Q+  L  GV+++VGTP
Sbjct:    71 QVLIVTPTRELALQVADEVAKLGKYL---KVRALAVYGGQAIERQIRGLRQGVEVIVGTP 127

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I          +  +LDEAD +L  G+   ID +   +  +T+   R Q ++ S
Sbjct:   128 GRILDHIGRKTFPAAEIKIVILDEADEMLDMGF---IDDIEAILNTLTN---RQQTLLFS 181

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWG 455
             ATL    +K + ++ +     V L G +     +  V  ++ P+ ++  G
Sbjct:   182 ATL-PAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYEL-PETEKIEG 229

 Score = 143 (55.4 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F+++G++  + KAV ++ + +PT +Q EAIPLIL G +++  A TG+GKT A+ LP+
Sbjct:     1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60

Query:    61 IQ 62
             +Q
Sbjct:    61 LQ 62

 Score = 120 (47.3 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             +T+ + A D A  G+DI  +  +IN  +P +  +Y+HRIGR GRA R G AI+L++
Sbjct:   289 KTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN 344


>UNIPROTKB|Q73EU1 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
            RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
            DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
            GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
            Uniprot:Q73EU1
        Length = 525

 Score = 186 (70.5 bits), Expect = 4.6e-29, Sum P(3) = 4.6e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 4.6e-29, Sum P(3) = 4.6e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 4.6e-29, Sum P(3) = 4.6e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>UNIPROTKB|A0R8U6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
            ProteinModelPortal:A0R8U6 STRING:A0R8U6
            EnsemblBacteria:EBBACT00000069056 GeneID:4546566
            GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
        Length = 528

 Score = 186 (70.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>UNIPROTKB|Q63GX5 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
            "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
            ProteinModelPortal:Q63GX5 STRING:Q63GX5
            EnsemblBacteria:EBBACT00000041470 GeneID:3022962
            GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
            BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
        Length = 528

 Score = 186 (70.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>UNIPROTKB|Q6HPE6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:281309 "Bacillus thuringiensis serovar konkukian str.
            97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
            ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
            GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
            PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
        Length = 528

 Score = 186 (70.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>UNIPROTKB|Q81VG0 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 186 (70.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>TIGR_CMR|BA_0247 [details] [associations]
            symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 186 (70.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>UNIPROTKB|Q81IT9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
            STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
            GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
            PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
        Length = 533

 Score = 186 (70.5 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q I+I P+RELA Q   ++ K  K     ++R L I GG ++  Q+  L     I+VGTP
Sbjct:    72 QGIVIAPTRELAIQVGEELYKIGKH---KRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   L L +    VLDEAD +L  G+   I+ +   +P+        Q ++ S
Sbjct:   129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D  ++++AER M  P  + +K ++     +    +++  ++
Sbjct:   183 ATMPD-PIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKK 226

 Score = 132 (51.5 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
 Identities = 30/70 (42%), Positives = 44/70 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M  F E+G+   + ++VE M +   T +QAE IP  L G D++  A+TG+GKT AF LP+
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query:    61 IQIVCETLKE 70
             +  V +T KE
Sbjct:    61 LDKV-DTHKE 69

 Score = 128 (50.1 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A+  V+        + 
Sbjct:   296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355

Query:   528 EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGE-IEEHLNVT 584
             E    R  +  +    D  ++G  ++    L  T+ N    ++  KR+  E +EE+ +VT
Sbjct:   356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYY--KRIAEEMLEENDSVT 413

Query:   585 I 585
             +
Sbjct:   414 V 414


>TIGR_CMR|CPS_1590 [details] [associations]
            symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
            STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
            OMA:AISECGY ProtClustDB:CLSK768209
            BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
        Length = 455

 Score = 190 (71.9 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 56/195 (28%), Positives = 102/195 (52%)

Query:   250 PPKDYIAVCN-APKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFK 308
             P  D IA  N A K +   ++  + SA        A +A+I+ P+RELA Q  + I +F 
Sbjct:    58 PILDAIAKANHAAKSSTTSTD--ENSAEEKSASGQAIRALILTPTRELANQVADNIKQFS 115

Query:   309 KFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLD 368
             +++  P I+  ++ GG  +  Q  +L  G+D++V TPGR+ + ++  ++ L+  +F VLD
Sbjct:   116 QYL--P-IKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLD 172

Query:   369 EADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVD 428
             EAD +L  G+   I+++      + +   + Q ++ SAT  D  VK +A +L+  P  + 
Sbjct:   173 EADRMLDMGFLTDIEKL------LLAVKHKHQTLMFSATFSD-RVKSLANQLLKSPKTIS 225

Query:   429 LKGEDAVPETVHHVV 443
             +  E+     +   V
Sbjct:   226 VSKENTTSGKIKQAV 240

 Score = 129 (50.5 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 28/55 (50%), Positives = 35/55 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  G+DI  L F++N  LP    +YVHR+GR GRA + G AISLVS   E+
Sbjct:   317 ATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDER 371

 Score = 121 (47.7 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 25/62 (40%), Positives = 41/62 (66%)

Query:     5 EEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIV 64
             + +G+  ++ KAV+   +   T +Q EAIP+I  G D+L +A+TG+GKT AF LPI+  +
Sbjct:     4 DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAI 63

Query:    65 CE 66
              +
Sbjct:    64 AK 65


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 182 (69.1 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 52/176 (29%), Positives = 92/176 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA Q   ++ ++ K   D  ++ L + GGV+ + Q   L  GVD++V TP
Sbjct:    75 RALILVPTRELAMQVAEKVEQYGK---DTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATP 131

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL     +        VLDEAD +L  G+   I+ ++K I  + S+   +Q ++ S
Sbjct:   132 GRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGF---IESINKIIDCLPSE---VQFLLFS 185

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHI 461
             ATL    V+++A+  +  P  + +    A    +   ++ +D    +T   L SH+
Sbjct:   186 ATLSR-KVRELAKTAVRDPHEISIAANQASKSNISQWLITVDK---DTKSALLSHL 237

 Score = 135 (52.6 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 24/60 (40%), Positives = 43/60 (71%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F ++G+   + + V ++ +  PT +Q +AIP+IL G D++ AA+TG+GKT +F LPI++
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

 Score = 120 (47.3 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 32/68 (47%), Positives = 40/68 (58%)

Query:   450 QDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509
             +D   G+++  + T GV AR     GIDI  L  ++N  LP     YVHRIGR GRAE +
Sbjct:   287 EDFKSGKIKYLVAT-GVAAR-----GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAV 340

Query:   510 GLAISLVS 517
             G AIS VS
Sbjct:   341 GEAISFVS 348


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 182 (69.1 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 52/176 (29%), Positives = 92/176 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA Q   ++ ++ K   D  ++ L + GGV+ + Q   L  GVD++V TP
Sbjct:    75 RALILVPTRELAMQVAEKVEQYGK---DTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATP 131

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL     +        VLDEAD +L  G+   I+ ++K I  + S+   +Q ++ S
Sbjct:   132 GRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGF---IESINKIIDCLPSE---VQFLLFS 185

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHI 461
             ATL    V+++A+  +  P  + +    A    +   ++ +D    +T   L SH+
Sbjct:   186 ATLSR-KVRELAKTAVRDPHEISIAANQASKSNISQWLITVDK---DTKSALLSHL 237

 Score = 135 (52.6 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 24/60 (40%), Positives = 43/60 (71%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F ++G+   + + V ++ +  PT +Q +AIP+IL G D++ AA+TG+GKT +F LPI++
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

 Score = 120 (47.3 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
 Identities = 32/68 (47%), Positives = 40/68 (58%)

Query:   450 QDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509
             +D   G+++  + T GV AR     GIDI  L  ++N  LP     YVHRIGR GRAE +
Sbjct:   287 EDFKSGKIKYLVAT-GVAAR-----GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAV 340

Query:   510 GLAISLVS 517
             G AIS VS
Sbjct:   341 GEAISFVS 348


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 189 (71.6 bits), Expect = 7.5e-29, Sum P(3) = 7.5e-29
 Identities = 55/178 (30%), Positives = 94/178 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA Q    I ++ K++    I  + + GGV+ ++Q   L  GVDI+V TP
Sbjct:    80 RALILVPTRELAVQVEASISQYAKYLD---ISSMAMYGGVDAQEQKQRLIWGVDILVATP 136

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+     L        VLDEAD +L  G+   ID ++K I ++    +  Q ++ S
Sbjct:   137 GRLLDMTHQRVLHFDELDMLVLDEADRMLDMGF---IDDINKIIERLP---EHRQNLLFS 190

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQT 463
             AT+ + +V+ +A+R ++ P  + +  + A    +   +V +D         L SHI T
Sbjct:   191 ATMSE-EVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSA---LLSHIIT 244

 Score = 137 (53.3 bits), Expect = 7.5e-29, Sum P(3) = 7.5e-29
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F  + +   I  A+ ++ +  PT +Q +AIP++L G D++ AA+TG+GKT +F LP+++
Sbjct:     2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61

Query:    63 IVCETLKEIXXXXXXXXXXXXVISPTWILSV 93
              +    KE             ++ PT  L+V
Sbjct:    62 QLNSQYKETGKKLRAKRIRALILVPTRELAV 92

 Score = 110 (43.8 bits), Expect = 7.5e-29, Sum P(3) = 7.5e-29
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A  G+DI  L  +IN  LP    +Y+HRIGR GRA   G AISLVS
Sbjct:   308 AARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVS 353


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 186 (70.5 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
 Identities = 49/161 (30%), Positives = 89/161 (55%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +++I+ P+RELA Q    I  +   +    ++  ++ GGV  + Q+  +  G+DI+V TP
Sbjct:    77 RSLILTPTRELASQIMQNIDDYSDGLG---LKTKVVYGGVGRQAQVDSIELGLDILVATP 133

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G ++      FVLDEAD +L  G+   +  +  ++PK      R Q ++ S
Sbjct:   134 GRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPK-----SR-QTLLFS 187

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGE----DAVPETVHHV 442
             AT+   +++ +AE ++  PT + +  E    D V ++V+H+
Sbjct:   188 ATM-PAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHL 227

 Score = 128 (50.1 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A D A  GID+  +  +IN  LP+D  NY+HRIGR  RA + G+AIS
Sbjct:   301 ATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAIS 347

 Score = 122 (48.0 bits), Expect = 8.1e-29, Sum P(3) = 8.1e-29
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M+ F+   +L  I   V    +  PT +Q E IP ++ G D+L  A+TG+GKT AF LPI
Sbjct:     1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60

Query:    61 I 61
             I
Sbjct:    61 I 61


>UNIPROTKB|Q81JK1 [details] [associations]
            symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 213 (80.0 bits), Expect = 8.3e-29, Sum P(3) = 8.3e-29
 Identities = 56/173 (32%), Positives = 92/173 (53%)

Query:   278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
             V+   N PQA+++ P+RELA Q    I    +F    +I+   I G      Q   L   
Sbjct:    66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRF---KRIKAAAIYGKSPFARQKLELKQK 122

Query:   338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397
               IVVGTPGR+ D I  G LSL   ++ V+DEAD +L  G+   ID++   I ++ +  K
Sbjct:   123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGF---IDQVEAIIDELPT--K 177

Query:   398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             R+ M+  SATL + DV++++   M  PT +++K      + + H + ++  ++
Sbjct:   178 RMTMLF-SATLPE-DVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEE 228

 Score = 114 (45.2 bits), Expect = 8.3e-29, Sum P(3) = 8.3e-29
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  GIDI  +  +IN  +P +K +YVHR GR GRA   G AI+ ++   ++
Sbjct:   298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDR 352

 Score = 111 (44.1 bits), Expect = 8.3e-29, Sum P(3) = 8.3e-29
 Identities = 21/62 (33%), Positives = 40/62 (64%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F    +  E+ +A+  + +  PT+VQ E IP+ L   D+++ ++TGSGKT +F +P+ +
Sbjct:     5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query:    63 IV 64
             +V
Sbjct:    65 MV 66


>TIGR_CMR|BA_5703 [details] [associations]
            symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 213 (80.0 bits), Expect = 8.3e-29, Sum P(3) = 8.3e-29
 Identities = 56/173 (32%), Positives = 92/173 (53%)

Query:   278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
             V+   N PQA+++ P+RELA Q    I    +F    +I+   I G      Q   L   
Sbjct:    66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRF---KRIKAAAIYGKSPFARQKLELKQK 122

Query:   338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397
               IVVGTPGR+ D I  G LSL   ++ V+DEAD +L  G+   ID++   I ++ +  K
Sbjct:   123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGF---IDQVEAIIDELPT--K 177

Query:   398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             R+ M+  SATL + DV++++   M  PT +++K      + + H + ++  ++
Sbjct:   178 RMTMLF-SATLPE-DVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEE 228

 Score = 114 (45.2 bits), Expect = 8.3e-29, Sum P(3) = 8.3e-29
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  GIDI  +  +IN  +P +K +YVHR GR GRA   G AI+ ++   ++
Sbjct:   298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDR 352

 Score = 111 (44.1 bits), Expect = 8.3e-29, Sum P(3) = 8.3e-29
 Identities = 21/62 (33%), Positives = 40/62 (64%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F    +  E+ +A+  + +  PT+VQ E IP+ L   D+++ ++TGSGKT +F +P+ +
Sbjct:     5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64

Query:    63 IV 64
             +V
Sbjct:    65 MV 66


>UNIPROTKB|Q47Z59 [details] [associations]
            symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
            "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 216 (81.1 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 47/140 (33%), Positives = 80/140 (57%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA+Q F+Q+   + F  + + + +LI+GG N  DQ+ VL    + +V T
Sbjct:    74 PRVVILTPTRELAKQVFSQL---RLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVAT 130

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D ++ GH  L      +LDEAD +L  G+   + +++K      +D ++ Q ++ 
Sbjct:   131 PGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINK-----AADHRKRQTLLF 185

Query:   405 SATLHDFDVKKMAERLMYFP 424
             SATL    V + A  L+  P
Sbjct:   186 SATLDHAQVNEFATELLTKP 205

 Score = 117 (46.2 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F + G+   +   +E M +  PT +Q +AIP  + G D++ +++TGSGKT AF +P +Q
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61

 Score = 102 (41.0 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             D A  G+D+  +  +IN  +P     +VHRIGR GRA   G AISLV
Sbjct:   304 DLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLV 350

 Score = 46 (21.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query:   262 KQNVKHSESADVS-AGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITD 313
             K   + +  A VS A   K V+N P+ +I +   ++ +    +IIK KK   D
Sbjct:   385 KPKKEKAVKAKVSVAKDKKAVSNKPRKVIKKTFLDIEDAGAMKIIKRKKLTPD 437


>TIGR_CMR|CPS_3215 [details] [associations]
            symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 216 (81.1 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 47/140 (33%), Positives = 80/140 (57%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA+Q F+Q+   + F  + + + +LI+GG N  DQ+ VL    + +V T
Sbjct:    74 PRVVILTPTRELAKQVFSQL---RLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVAT 130

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D ++ GH  L      +LDEAD +L  G+   + +++K      +D ++ Q ++ 
Sbjct:   131 PGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINK-----AADHRKRQTLLF 185

Query:   405 SATLHDFDVKKMAERLMYFP 424
             SATL    V + A  L+  P
Sbjct:   186 SATLDHAQVNEFATELLTKP 205

 Score = 117 (46.2 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F + G+   +   +E M +  PT +Q +AIP  + G D++ +++TGSGKT AF +P +Q
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61

 Score = 102 (41.0 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             D A  G+D+  +  +IN  +P     +VHRIGR GRA   G AISLV
Sbjct:   304 DLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLV 350

 Score = 46 (21.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query:   262 KQNVKHSESADVS-AGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITD 313
             K   + +  A VS A   K V+N P+ +I +   ++ +    +IIK KK   D
Sbjct:   385 KPKKEKAVKAKVSVAKDKKAVSNKPRKVIKKTFLDIEDAGAMKIIKRKKLTPD 437


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 189 (71.6 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 52/165 (31%), Positives = 90/165 (54%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+++ P+RELA+Q  + +  + K  T+ KI  + + GG ++K Q++ L  GVDI++ TP
Sbjct:    83 RALVLVPTRELAQQVLDSLQAYAKG-TELKI--VAVYGGTSMKVQLNHLRGGVDILIATP 139

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D      L L      VLDEAD +L  G+   + R+ +++  +       Q +  S
Sbjct:   140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR------QTLFFS 193

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT  D  +K +A R+M  P  V +   ++  ETV  +V  +D ++
Sbjct:   194 ATF-DSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR 237

 Score = 127 (49.8 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F ++G+   +   + E+    PT +Q +AIP +L G DVL  A+TG+GKT AF LP+IQ
Sbjct:     8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

 Score = 121 (47.7 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G++R+ I TD V AR     G+DI+ L  ++N  +P    +YVHRIGR GRA   GLA+S
Sbjct:   300 GKVRALIATD-VAAR-----GLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVS 353

Query:   515 LVS 517
             L+S
Sbjct:   354 LLS 356


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 189 (71.6 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 52/165 (31%), Positives = 90/165 (54%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+++ P+RELA+Q  + +  + K  T+ KI  + + GG ++K Q++ L  GVDI++ TP
Sbjct:    83 RALVLVPTRELAQQVLDSLQAYAKG-TELKI--VAVYGGTSMKVQLNHLRGGVDILIATP 139

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D      L L      VLDEAD +L  G+   + R+ +++  +       Q +  S
Sbjct:   140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR------QTLFFS 193

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT  D  +K +A R+M  P  V +   ++  ETV  +V  +D ++
Sbjct:   194 ATF-DSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR 237

 Score = 127 (49.8 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F ++G+   +   + E+    PT +Q +AIP +L G DVL  A+TG+GKT AF LP+IQ
Sbjct:     8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

 Score = 121 (47.7 bits), Expect = 8.8e-29, Sum P(3) = 8.8e-29
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G++R+ I TD V AR     G+DI+ L  ++N  +P    +YVHRIGR GRA   GLA+S
Sbjct:   300 GKVRALIATD-VAAR-----GLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVS 353

Query:   515 LVS 517
             L+S
Sbjct:   354 LLS 356


>FB|FBgn0001942 [details] [associations]
            symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
            "Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0006413 "translational initiation"
            evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
            factor 4F complex" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
            evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
            ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
            unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
            cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
            [GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
            "instar larval development" evidence=TAS] [GO:0009950
            "dorsal/ventral axis specification" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
            damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
            cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
            maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
            [GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
            organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
            GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
            GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
            GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
            GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
            EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
            RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
            RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
            ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
            MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
            EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
            EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
            EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
            KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
            InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
            GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
            Uniprot:Q02748
        Length = 403

 Score = 215 (80.7 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
 Identities = 56/169 (33%), Positives = 93/169 (55%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA Q    ++   +++   K+     IGG NV++   +L SG  +VVGTP
Sbjct:   100 QALILAPTRELATQIQRVVMALGEYM---KVHSHACIGGTNVREDARILESGCHVVVGTP 156

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I+   L   + + FVLDEAD +L +G+ + I  + K +P    D   +Q+I+ S
Sbjct:   157 GRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPP---D---VQVILLS 210

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETW 454
             AT+   DV +++   M  P  + +K E+   E +    V +   + E W
Sbjct:   211 ATMPP-DVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNV---KQENW 255

 Score = 113 (44.8 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ ++
Sbjct:   332 GIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFIT 374

 Score = 91 (37.1 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
 Identities = 19/67 (28%), Positives = 39/67 (58%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F++M +  E+ + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q 
Sbjct:    32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 91

Query:    64 VCETLKE 70
             +  +++E
Sbjct:    92 IDTSIRE 98

 Score = 44 (20.5 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
 Identities = 7/20 (35%), Positives = 16/20 (80%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             D++R+L +IE+  + TI+++
Sbjct:   376 DDRRILKDIEQFYHTTIEEM 395


>DICTYBASE|DDB_G0292108 [details] [associations]
            symbol:DDB_G0292108 "DEAD-box ATP-dependent RNA
            helicase" species:44689 "Dictyostelium discoideum" [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292108 GO:GO:0005524
            EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_629833.1 ProteinModelPortal:Q54DN9
            EnsemblProtists:DDB0184228 GeneID:8628514 KEGG:ddi:DDB_G0292108
            OMA:HVSEDYL Uniprot:Q54DN9
        Length = 829

 Score = 194 (73.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
 Identities = 54/139 (38%), Positives = 76/139 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFIT--------DPKIRELLIIGGVNVKDQMSVLSS 336
             P  +I+ PS+EL  Q  N+I +  K I           KIR L ++GGVN   Q+  L S
Sbjct:   285 PIGLILLPSKELVTQVSNEINQLIKNIRIEESTIEGGGKIRVLSLMGGVNEPKQVKTLKS 344

Query:   337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396
             GVDI++GTPGR+  L++   LSL   R  V+DE D L   G+   I  + + +P+I S  
Sbjct:   345 GVDIIIGTPGRIYQLLNQEQLSLQQVRMTVIDEFDKLFNLGFFPDIRDIFQYLPQIRSRT 404

Query:   397 K--RLQMIVCSATL-HDFD 412
             K   +Q ++ SATL H  D
Sbjct:   405 KPFSMQTVLTSATLTHRMD 423

 Score = 153 (58.9 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+E G+  E+ ++++E +W  PTDVQ + IPLI  G + + ++ TGSGKTGA+ LP IQI
Sbjct:    96 FKEFGLSNELIESIKENNWEKPTDVQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPFIQI 155

Query:    64 V 64
             +
Sbjct:   156 L 156

 Score = 101 (40.6 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH-GE 528
             G+ I GL  ++N+ +P    +Y+HRIGRVGR    G +++ VS  P+++ +  GE
Sbjct:   546 GVHIEGLDAVVNLDVPHVSEDYLHRIGRVGRNGENGFSLTFVS--PDRLIFKVGE 598

 Score = 38 (18.4 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query:   322 IGGVNVKDQMSVLSSGVDI 340
             IGG NV     VL+ GV I
Sbjct:   531 IGGTNVLICTDVLTRGVHI 549


>UNIPROTKB|P96614 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI] [GO:0010501 "RNA secondary
            structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
            GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
            EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
            ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
            EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
            PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
            GO:GO:0010501 Uniprot:P96614
        Length = 494

 Score = 191 (72.3 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
 Identities = 53/173 (30%), Positives = 92/173 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QAI+I P+RELA Q   ++ K  +   D + + L I GG ++  Q+  L    +I+VGTP
Sbjct:    73 QAIVIAPTRELAIQVSEELYKIGQ---DKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTP 129

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   + L +    V+DEAD +L  G+   ID +   +  + S+    Q ++ S
Sbjct:   130 GRLLDHINRRTIRLNNVNTVVMDEADEMLNMGF---IDDIESILSNVPSEH---QTLLFS 183

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD-ETWGRL 457
             AT+    +K++AER M  P  V +K ++     +    +++  ++  +T  RL
Sbjct:   184 ATM-PAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRL 235

 Score = 128 (50.1 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
 Identities = 40/122 (32%), Positives = 59/122 (48%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A++ + T  EK     
Sbjct:   297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFI-TPREKSMLRA 355

Query:   528 -EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMV-NGCCIWFDEKRMLGEIEEHLNV 583
              E    R  +       D  ++G  QV +  L  T+  N    +      L  +E+H  V
Sbjct:   356 IEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAEL--LEDHDAV 413

Query:   584 TI 585
             T+
Sbjct:   414 TV 415

 Score = 115 (45.5 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++  +  ++ KA+  M +   T +QA+ IPL L   DV+  A+TG+GKT AF +P+++
Sbjct:     5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63


>UNIPROTKB|Q81QF0 [details] [associations]
            symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 188 (71.2 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
 Identities = 54/160 (33%), Positives = 85/160 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA Q   +I K    +    I  L I GG +V  Q+  L     IVV TP
Sbjct:    75 QALIVAPTRELALQITTEIKKM--LVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATP 132

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I    + L++    VLDEAD +L  G+   I+ +  + P     G + Q ++ S
Sbjct:   133 GRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP-----GSK-QTMLFS 186

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK 445
             AT+   D+KK+A+R M  P  + ++ E+   +T+   V++
Sbjct:   187 ATIPK-DIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIE 225

 Score = 130 (50.8 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  G+D+ G+  + N  +P+D  +Y+HRIGR GRA   GLAI+ V+   EK
Sbjct:   300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEK 354

 Score = 113 (44.8 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F E+G+       + E      T +Q +AIP+IL G D++  A+TG+GKT AF LPI++
Sbjct:     7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65


>TIGR_CMR|BA_2475 [details] [associations]
            symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 188 (71.2 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
 Identities = 54/160 (33%), Positives = 85/160 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA Q   +I K    +    I  L I GG +V  Q+  L     IVV TP
Sbjct:    75 QALIVAPTRELALQITTEIKKM--LVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATP 132

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I    + L++    VLDEAD +L  G+   I+ +  + P     G + Q ++ S
Sbjct:   133 GRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP-----GSK-QTMLFS 186

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK 445
             AT+   D+KK+A+R M  P  + ++ E+   +T+   V++
Sbjct:   187 ATIPK-DIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIE 225

 Score = 130 (50.8 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  G+D+ G+  + N  +P+D  +Y+HRIGR GRA   GLAI+ V+   EK
Sbjct:   300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEK 354

 Score = 113 (44.8 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F E+G+       + E      T +Q +AIP+IL G D++  A+TG+GKT AF LPI++
Sbjct:     7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE 65


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 176 (67.0 bits), Expect = 6.2e-28, Sum P(4) = 6.2e-28
 Identities = 48/147 (32%), Positives = 77/147 (52%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             APQ +++ P+RELA Q    +  F K +    +  + + GG     Q+  L  G  IVVG
Sbjct:    74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNV--VALYGGQRYDVQLRALRQGPQIVVG 131

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D +  G L L+     VLDEAD +L+ G+   ++ +  QIP    +G   Q  +
Sbjct:   132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP----EGH--QTAL 185

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLK 430
              SAT+ +  ++++  R M  P  V ++
Sbjct:   186 FSATMPEA-IRRITRRFMKEPQEVRIQ 211

 Score = 138 (53.6 bits), Expect = 6.2e-28, Sum P(4) = 6.2e-28
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F ++G+   I +A+ ++ +  P+ +QAE IP +L G DVL  A+TGSGKT AF LP++Q 
Sbjct:     8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query:    64 VCETLK 69
             +   LK
Sbjct:    68 LDPELK 73

 Score = 119 (46.9 bits), Expect = 6.2e-28, Sum P(4) = 6.2e-28
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:   450 QDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509
             +++T  RL+   + D + A D A  G+D+  +  ++N  +P D  +YVHRIGR GRA R 
Sbjct:   284 REQTLERLKDG-RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342

Query:   510 GLAISLV 516
             G A+  V
Sbjct:   343 GRALLFV 349

 Score = 47 (21.6 bits), Expect = 6.2e-28, Sum P(4) = 6.2e-28
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query:   570 EKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGK 602
             E+R+L  IE  + +TI +V    E+P  E  GK
Sbjct:   353 ERRLLRNIERTMKLTIPEV----ELPNAELLGK 381


>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
            symbol:PFE0925c "snrnp protein, putative"
            species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
            HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
            ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
            GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
            ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
        Length = 1123

 Score = 195 (73.7 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             + P A++I PSRELA Q + +  KF  + +    R + ++GG N + Q   L  GV+IV+
Sbjct:   773 DGPYALVIAPSRELAIQIYEETNKFASYCS---CRTVAVVGGRNAEAQAFELRRGVEIVI 829

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             GTPGR++D +   +  L  C + +LDEAD ++  G+ + +  +  +IP
Sbjct:   830 GTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIP 877

 Score = 128 (50.1 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             A D A  GID+ G+  +IN  +P D  +Y HRIGR GRA   GLAIS ++     ++Y
Sbjct:  1023 ATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLFY 1080

 Score = 125 (49.1 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             +EE  +  ++ KA+++  +  PT +Q +AIP+ L   D++  AETGSGKT AF LP++  
Sbjct:   700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 759

Query:    64 VCETLKEIXXXXXXXXXXXXVISPTWILSV 93
             V + L  +            VI+P+  L++
Sbjct:   760 V-KQLPPLTYETSQDGPYALVIAPSRELAI 788

 Score = 40 (19.1 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query:   216 NISQQLKNSAFYPAVVLKNAEMSFN 240
             ++ +Q K + FY  +V     MS N
Sbjct:   519 DVREQRKKNNFYDKLVQNRLNMSLN 543


>UNIPROTKB|Q8I0W7 [details] [associations]
            symbol:PFE0925c "Snrnp protein, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
            HOGENOM:HOG000268796 RefSeq:XP_001351742.1
            ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
            GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
            ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
        Length = 1123

 Score = 195 (73.7 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             + P A++I PSRELA Q + +  KF  + +    R + ++GG N + Q   L  GV+IV+
Sbjct:   773 DGPYALVIAPSRELAIQIYEETNKFASYCS---CRTVAVVGGRNAEAQAFELRRGVEIVI 829

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             GTPGR++D +   +  L  C + +LDEAD ++  G+ + +  +  +IP
Sbjct:   830 GTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIP 877

 Score = 128 (50.1 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             A D A  GID+ G+  +IN  +P D  +Y HRIGR GRA   GLAIS ++     ++Y
Sbjct:  1023 ATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLFY 1080

 Score = 125 (49.1 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             +EE  +  ++ KA+++  +  PT +Q +AIP+ L   D++  AETGSGKT AF LP++  
Sbjct:   700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSY 759

Query:    64 VCETLKEIXXXXXXXXXXXXVISPTWILSV 93
             V + L  +            VI+P+  L++
Sbjct:   760 V-KQLPPLTYETSQDGPYALVIAPSRELAI 788

 Score = 40 (19.1 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query:   216 NISQQLKNSAFYPAVVLKNAEMSFN 240
             ++ +Q K + FY  +V     MS N
Sbjct:   519 DVREQRKKNNFYDKLVQNRLNMSLN 543


>WB|WBGene00000479 [details] [associations]
            symbol:cgh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
            to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0017148 "negative regulation of translation"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
            GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
            GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
            GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
            RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
            DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
            PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
            GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
            WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
            NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            Uniprot:Q95YF3
        Length = 430

 Score = 202 (76.2 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 51/149 (34%), Positives = 87/149 (58%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA++I P+RELA QT    ++  K I   +++ ++  GG +++D +  L+  V +V+ 
Sbjct:   111 AIQAMVIVPTRELALQTSQICVELSKHI---QLKVMVTTGGTDLRDDIMRLNGTVHLVIA 167

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ DL+  G   + HC+  VLDEAD LL Q +  ++DR+   +PK     +R Q+++
Sbjct:   168 TPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPK-----ER-QVML 221

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGE 432
              SAT  +  V    ++ M+ P  ++L  E
Sbjct:   222 YSATFPN-TVTSFMQKHMHKPYEINLMEE 249

 Score = 122 (48.0 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 24/68 (35%), Positives = 41/68 (60%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FE+  +  ++   + E  W  P+ +Q  +I + L G D+L  A+ G+GKTGA+C+P+I+ 
Sbjct:    45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104

Query:    64 VCETLKEI 71
             +   LK I
Sbjct:   105 IQPALKAI 112

 Score = 101 (40.6 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P +   Y+HRIGR GR   +G+AI+L++
Sbjct:   343 GIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT 385

 Score = 40 (19.1 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQ----VDDKLEIPADE 598
             G  +N   I ++++  L  IE+ L   I+     VD KL + AD+
Sbjct:   378 GVAIN--LITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYV-ADQ 419


>UNIPROTKB|Q95YF3 [details] [associations]
            symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
            GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
            GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
            GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
            RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
            DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
            PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
            GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
            WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
            NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            Uniprot:Q95YF3
        Length = 430

 Score = 202 (76.2 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 51/149 (34%), Positives = 87/149 (58%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA++I P+RELA QT    ++  K I   +++ ++  GG +++D +  L+  V +V+ 
Sbjct:   111 AIQAMVIVPTRELALQTSQICVELSKHI---QLKVMVTTGGTDLRDDIMRLNGTVHLVIA 167

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ DL+  G   + HC+  VLDEAD LL Q +  ++DR+   +PK     +R Q+++
Sbjct:   168 TPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPK-----ER-QVML 221

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGE 432
              SAT  +  V    ++ M+ P  ++L  E
Sbjct:   222 YSATFPN-TVTSFMQKHMHKPYEINLMEE 249

 Score = 122 (48.0 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 24/68 (35%), Positives = 41/68 (60%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FE+  +  ++   + E  W  P+ +Q  +I + L G D+L  A+ G+GKTGA+C+P+I+ 
Sbjct:    45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104

Query:    64 VCETLKEI 71
             +   LK I
Sbjct:   105 IQPALKAI 112

 Score = 101 (40.6 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P +   Y+HRIGR GR   +G+AI+L++
Sbjct:   343 GIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT 385

 Score = 40 (19.1 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQ----VDDKLEIPADE 598
             G  +N   I ++++  L  IE+ L   I+     VD KL + AD+
Sbjct:   378 GVAIN--LITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYV-ADQ 419


>POMBASE|SPAC1006.07 [details] [associations]
            symbol:SPAC1006.07 "translation initiation factor eIF4A
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
            "cytoplasmic translational initiation" evidence=NAS] [GO:0003743
            "translation initiation factor activity" evidence=ISO] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
            "ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
            "eukaryotic translation initiation factor 4F complex" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
            EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
            ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
            EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
            OMA:PILEMED NextBio:20803983 Uniprot:P47943
        Length = 392

 Score = 194 (73.4 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
 Identities = 50/165 (30%), Positives = 88/165 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA+Q    ++     +    +     IGG  V+D M+ L +GV +VVGTP
Sbjct:    89 QALILAPTRELAQQIQKVVVALGDLMN---VECHACIGGTLVRDDMAALQAGVHVVVGTP 145

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I    L     + FVLDEAD +L +G+ + I  + + +P         Q+++ S
Sbjct:   146 GRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA------QVVLLS 199

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+   DV ++  + M  P  + +K ++   E +    V ++ ++
Sbjct:   200 ATMPQ-DVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEE 243

 Score = 112 (44.5 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F++M + PE+ + +    +  P+ +Q  AI  ILG  DVL  A++G+GKT  F + ++Q 
Sbjct:    21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80

Query:    64 VCETLKE 70
             +  +LK+
Sbjct:    81 IDTSLKQ 87

 Score = 109 (43.4 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G++I+ V+
Sbjct:   321 GIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVT 363

 Score = 43 (20.2 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             D+ RM+ EIE+  N  I+++
Sbjct:   365 DDVRMMREIEQFYNTHIEEM 384


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 178 (67.7 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
 Identities = 54/167 (32%), Positives = 85/167 (50%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A + +I+ P+RELA Q  + +    +F     I   LI+GG++ K Q   L    D+V+ 
Sbjct:   261 AIRVLILLPTRELALQCQSVMENLAQF---SNITSCLIVGGLSNKAQEVELRKSPDVVIA 317

Query:   344 TPGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             TPGR+ D +   H + L      +LDEAD LL  G+ + I+++ +  P         Q +
Sbjct:   318 TPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPT------NRQTM 371

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ 449
             + SATL+D +VK +A+  +  P  V +     V  T+    VKI PQ
Sbjct:   372 LFSATLND-EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQ 417

 Score = 150 (57.9 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
 Identities = 29/62 (46%), Positives = 44/62 (70%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +  FEE+ +   + KAV+++ +  PT +QA+AIPL L G D+L +A TGSGKT AF LP+
Sbjct:   189 LPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPV 248

Query:    61 IQ 62
             ++
Sbjct:   249 LE 250

 Score = 113 (44.8 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521
             Q + + A D A  G+DI G+  +IN  +P++ ANY+HR+GR  RA   G + S ++    
Sbjct:   486 QVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDR 545

Query:   522 KV 523
             K+
Sbjct:   546 KL 547


>FB|FBgn0263231 [details] [associations]
            symbol:bel "belle" species:7227 "Drosophila melanogaster"
            [GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
            development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
            [GO:0016442 "RNA-induced silencing complex" evidence=IDA]
            [GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
            "regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
            sister chromatid segregation" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
            GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
            GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
            RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
            SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
            EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
            UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
            OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
            NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
        Length = 798

 Score = 211 (79.3 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
 Identities = 48/123 (39%), Positives = 74/123 (60%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P  +++ P+RELA Q F +    KKF    ++R  ++ GG N  +QM  L  G  ++V T
Sbjct:   379 PLGLVLAPTRELATQIFEEA---KKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVAT 435

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ED+I+ G + L + RF VLDEAD +L  G+   I R+ +Q+  +   G+R Q ++ 
Sbjct:   436 PGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQL-NMPPTGQR-QTLMF 493

Query:   405 SAT 407
             SAT
Sbjct:   494 SAT 496

 Score = 115 (45.5 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
 Identities = 22/42 (52%), Positives = 30/42 (71%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
             PT VQ  AIP+I+ G D++  A+TGSGKT AF +PI+  + E
Sbjct:   318 PTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYE 359

 Score = 112 (44.5 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
 Identities = 35/92 (38%), Positives = 45/92 (48%)

Query:   430 KGEDAVPETVH---HVVVKI--DPQQDETWGRLRSHIQTDG--VHARDNARPGIDISGLP 482
             KG D++ E ++   H V  I  D  Q E    LR     D   + A   A  G+DI  + 
Sbjct:   570 KGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVK 629

Query:   483 FIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
              +IN  LP D   YVHRIGR GR   +G+A S
Sbjct:   630 HVINFDLPSDVEEYVHRIGRTGRMGNLGVATS 661


>ASPGD|ASPL0000037981 [details] [associations]
            symbol:AN2932 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
            PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
            Uniprot:Q5B948
        Length = 398

 Score = 207 (77.9 bits), Expect = 1.7e-27, Sum P(4) = 1.7e-27
 Identities = 53/167 (31%), Positives = 90/167 (53%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA+I+ P+RELA+Q    +I    F+    I+    IGG  V+D M+ L  G  IVVG
Sbjct:    93 ACQALIVAPTRELAQQIQKVVIAIGDFMN---IQCHACIGGTAVRDDMNALREGPQIVVG 149

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D+I    L     + F+LDEAD +L +G+   I  + + +P+ T      Q+++
Sbjct:   150 TPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQST------QVVL 203

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              SAT+   DV ++  + M  P  + +K ++   E +    + ++ ++
Sbjct:   204 LSATMPQ-DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEE 249

 Score = 114 (45.2 bits), Expect = 1.7e-27, Sum P(4) = 1.7e-27
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D    GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+
Sbjct:   320 ATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT 369

 Score = 94 (38.1 bits), Expect = 1.7e-27, Sum P(4) = 1.7e-27
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+ M + PE+ + V    +  P+ +Q  AI  I+ G DV+  A++G+GKT  F +  +Q
Sbjct:    26 SFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQ 85

 Score = 39 (18.8 bits), Expect = 1.7e-27, Sum P(4) = 1.7e-27
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             D+ RM+ EIE+  +  I+++
Sbjct:   371 DDVRMMREIEQFYSTQIEEM 390


>UNIPROTKB|A4QVP2 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
            RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
            EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
            Uniprot:A4QVP2
        Length = 396

 Score = 206 (77.6 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
 Identities = 51/165 (30%), Positives = 88/165 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA+Q    ++    F+    I     IGG +V+D M  L  G  +VVGTP
Sbjct:    93 QALILAPTRELAQQIQKVVVAIGDFMN---IECHACIGGTSVRDDMKALQDGPQVVVGTP 149

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I    L     + FVLDEAD +L +G+   I  + + +P+ T      Q+++ S
Sbjct:   150 GRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQST------QVVLLS 203

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+   DV ++  + M  P  + +K ++   E +    + ++ ++
Sbjct:   204 ATMPQ-DVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEE 247

 Score = 114 (45.2 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D    GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+
Sbjct:   318 ATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT 367

 Score = 99 (39.9 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
 Identities = 19/68 (27%), Positives = 40/68 (58%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM +  E+ + +    +  P+ +Q  AI  ++ G DV+  A++G+GKT  F + ++Q
Sbjct:    24 SFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 83

Query:    63 IVCETLKE 70
              +   +K+
Sbjct:    84 KIDTNVKQ 91


>UNIPROTKB|Q65N62 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
            EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
            ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
            EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
            GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
            GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
            PATRIC:18946609 ProtClustDB:CLSK886742
            BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
        Length = 487

 Score = 184 (69.8 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 54/173 (31%), Positives = 88/173 (50%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QAI+I P+RELA Q   ++ K  +   D + R L I GG ++  Q+  L     I+VGTP
Sbjct:    73 QAIVIAPTRELAIQVSEELYKIGQ---DKRARVLPIYGGQDIGRQIRALKKNPHIIVGTP 129

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I+   + L      VLDEAD +L  G+   I+ +   +P         Q ++ S
Sbjct:   130 GRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPA------EHQTLLFS 183

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD-ETWGRL 457
             AT+    +K++AER M  P  V +K ++     +    +++  ++  +T  RL
Sbjct:   184 ATM-PAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRL 235

 Score = 129 (50.5 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 38/121 (31%), Positives = 60/121 (49%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DISG+  + N  +P D  +YVHRIGR GRA + G+A++ + T  EK     
Sbjct:   297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFI-TPREKDMLRA 355

Query:   528 -EWCATRGRNCSNTQLTD--VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVT 584
              E    R  +       D  ++G  QV +  +  T++    + F        +E+H +VT
Sbjct:   356 IEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIR-TIIEENNLNFYMTAAAELLEDHDSVT 414

Query:   585 I 585
             +
Sbjct:   415 V 415

 Score = 115 (45.5 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++  +  ++ KA++ M +   T +QA+ IPL L   DV+  A+TG+GKT AF +P+++
Sbjct:     5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63


>ASPGD|ASPL0000013201 [details] [associations]
            symbol:AN4233 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
            STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
            KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
        Length = 465

 Score = 165 (63.1 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 31/64 (48%), Positives = 47/64 (73%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+E+G++ ++ +A E M +  PT +Q++AIPL L G DV+  AETGSGKT AF LP++Q
Sbjct:    47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106

Query:    63 IVCE 66
              + E
Sbjct:   107 ALME 110

 Score = 133 (51.9 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 35/112 (31%), Positives = 62/112 (55%)

Query:   284 APQAI---IIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDI 340
             APQ +   ++ P+RELA Q  +Q   F+   +   +R  +I+GG+++  Q   L     I
Sbjct:   111 APQTLFGLVLAPTRELAYQ-ISQA--FETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHI 167

Query:   341 VVGTPGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             +V TPGR+ D +      SL + ++  +DEAD LL   +G  +D++ + +P+
Sbjct:   168 IVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPR 219

 Score = 131 (51.2 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G+ RS  + D + A D A  G+DI  +  + N  LP D   Y+HR+GR  RA + G+AIS
Sbjct:   329 GKFRSRSR-DILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAIS 387

Query:   515 LVSTVPEKVW 524
              V+    +VW
Sbjct:   388 FVTQYDVEVW 397


>TIGR_CMR|SO_4034 [details] [associations]
            symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
            acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
            ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
            PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
        Length = 623

 Score = 183 (69.5 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
 Identities = 50/183 (27%), Positives = 94/183 (51%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             PQ +++ P+RELA Q       + KF+ +  +  L I GG +++ Q++ L  G  ++VGT
Sbjct:    74 PQILVLAPTRELAVQVAEAFSSYAKFMKNFHV--LPIYGGQSMQQQLNALKRGPQVIVGT 131

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D +  G L L   +  VLDEAD +LK G+ + I+ + +  P       + Q+ + 
Sbjct:   132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPP------QRQLALF 185

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD-ETWGRLRSHIQT 463
             SAT+ +  +K++A + +   T + +       +++    V++      E   R+     T
Sbjct:   186 SATMPE-QIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENT 244

Query:   464 DGV 466
             +G+
Sbjct:   245 EGI 247

 Score = 134 (52.2 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
 Identities = 25/69 (36%), Positives = 47/69 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-Q 62
             F E+G+   + +A++E+ +  PT +Q+ +I  ++ G D+L  A+TG+GKTGAF LP++ +
Sbjct:     8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67

Query:    63 IVCETLKEI 71
             +  +T  +I
Sbjct:    68 VTSQTTPQI 76

 Score = 115 (45.5 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D A  G+D+  +  ++N  +P D   YVHRIGR GRA R G+AI  V++
Sbjct:   300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTS 350


>POMBASE|SPAC823.08c [details] [associations]
            symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
            SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
            KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
        Length = 465

 Score = 158 (60.7 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+E+GV+ E+ +A E++ +  PT +Q EAIP++L   DV+  A+TGSGKT AF LP+IQ
Sbjct:    48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106

 Score = 158 (60.7 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
 Identities = 49/164 (29%), Positives = 90/164 (54%)

Query:   279 KLVNN-APQ-AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
             +L NN +P  A+++ P+RELA Q   Q   F+       +R ++I+GG+++  Q   LS 
Sbjct:   107 ELWNNPSPFFAVVLAPTRELAYQISEQ---FEAIGGSIGVRSVVIVGGMDMVTQAVALSK 163

Query:   337 GVDIVVGTPGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSD 395
                ++V TPGR+ D +      SL + ++ ++DEAD LL   +G +ID++ K IP     
Sbjct:   164 KPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH---- 219

Query:   396 GKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV 439
              +R + ++ SAT+    V+K+    ++ P  V +  + +  +T+
Sbjct:   220 -ER-RTLLFSATMTS-KVEKLQRASLHQPVRVAVSSKFSTVDTL 260

 Score = 112 (44.5 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DI  +  +IN  +P D   Y+HR+GR  RA R G +I+LV+    + +   
Sbjct:   341 ATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRI 400

Query:   528 EWCATRGRNCSNTQLTDVKGNSQVPIFLLS 557
             E  AT G+     ++ D +G     +FLLS
Sbjct:   401 E--ATIGKKMQEYEI-DKEG-----VFLLS 422


>UNIPROTKB|Q9KU63 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
            RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
            GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 161 (61.7 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
 Identities = 45/141 (31%), Positives = 68/141 (48%)

Query:   288 IIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGR 347
             +I+ P+RELA Q   Q     K   + ++    I GGV  ++   +L++  DIVV TPGR
Sbjct:    79 LILTPTRELAMQVAEQAQALAK---NTRLNIFTITGGVQYQEHADILATTQDIVVATPGR 135

Query:   348 MEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407
             + + I           + +LDEAD +L  G+G  +DR+       T    R Q ++ SAT
Sbjct:   136 LLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLS------TECRWRKQTLLFSAT 189

Query:   408 LHDFDVKKMAERLMYFPTWVD 428
             L    V+     L+  P  VD
Sbjct:   190 LEGRGVEGFTADLLKDPAHVD 210

 Score = 144 (55.7 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F ++ + P + +A+EEM +  PT VQAEAIP  L G DVL +A TG+GKT AF +P +Q 
Sbjct:     5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query:    64 VCE 66
             + +
Sbjct:    65 LLD 67

 Score = 117 (46.2 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D A  GID+  +  +IN  LP     Y+HRIGR GRA + G+AISLV
Sbjct:   302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350


>TIGR_CMR|VC_0660 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
            ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
            KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 161 (61.7 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
 Identities = 45/141 (31%), Positives = 68/141 (48%)

Query:   288 IIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGR 347
             +I+ P+RELA Q   Q     K   + ++    I GGV  ++   +L++  DIVV TPGR
Sbjct:    79 LILTPTRELAMQVAEQAQALAK---NTRLNIFTITGGVQYQEHADILATTQDIVVATPGR 135

Query:   348 MEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407
             + + I           + +LDEAD +L  G+G  +DR+       T    R Q ++ SAT
Sbjct:   136 LLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLS------TECRWRKQTLLFSAT 189

Query:   408 LHDFDVKKMAERLMYFPTWVD 428
             L    V+     L+  P  VD
Sbjct:   190 LEGRGVEGFTADLLKDPAHVD 210

 Score = 144 (55.7 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F ++ + P + +A+EEM +  PT VQAEAIP  L G DVL +A TG+GKT AF +P +Q 
Sbjct:     5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query:    64 VCE 66
             + +
Sbjct:    65 LLD 67

 Score = 117 (46.2 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D A  GID+  +  +IN  LP     Y+HRIGR GRA + G+AISLV
Sbjct:   302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV 350


>TAIR|locus:2119176 [details] [associations]
            symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
            IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
            ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
            EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
            GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
            PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
            Uniprot:Q9SZB4
        Length = 542

 Score = 216 (81.1 bits), Expect = 9.8e-27, Sum P(3) = 9.8e-27
 Identities = 44/97 (45%), Positives = 67/97 (69%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKF-KKFITD--PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P A++I PSRELA+QT++ + +F    + D  P++R LL IGGV+++ Q+ V+  GV IV
Sbjct:   174 PIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIV 233

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
             V TPGR++D+++   +SL  CR   LDEAD L+  G+
Sbjct:   234 VATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGF 270

 Score = 109 (43.4 bits), Expect = 9.8e-27, Sum P(3) = 9.8e-27
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P +  NYVHRIGR GR  + G+A + ++
Sbjct:   400 DVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453

 Score = 96 (38.9 bits), Expect = 9.8e-27, Sum P(3) = 9.8e-27
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             PT +Q + +P++L G D++  A TGSGKT  F LP+I
Sbjct:   120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156


>FB|FBgn0015331 [details] [associations]
            symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
            "establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
            system development" evidence=NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
            GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
            EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
            ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
            MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
            EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
            UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
            OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
            NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
        Length = 619

 Score = 196 (74.1 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
 Identities = 42/100 (42%), Positives = 61/100 (61%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGV 338
             N  P  +II PSRELA+QT   I  + K +     P+IR  L +GG+ V + + V+S GV
Sbjct:   251 NEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGV 310

Query:   339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
              IVV TPGR+ D++    L+L  CR+  +DEAD ++  G+
Sbjct:   311 HIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGF 350

 Score = 130 (50.8 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             D + A D A  G+D   +  +IN  +PDD  NYVHRIGR GR+   GLA +L++   E+
Sbjct:   480 DVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQ 538

 Score = 100 (40.3 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
             PT +Q + +P +L G D++  A TGSGKT  F LP+I    E
Sbjct:   200 PTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALE 241


>UNIPROTKB|O05855 [details] [associations]
            symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
            species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
            wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
            EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
            RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
            EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
            GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
            KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
            TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
            Uniprot:O05855
        Length = 527

 Score = 188 (71.2 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
 Identities = 59/171 (34%), Positives = 88/171 (51%)

Query:   281 VNNAPQAIIIEPSRELAEQTFNQIIKFKKFIT-DPK------IRELL----IIGGVNVKD 329
             +  AP+A+++ P+REL  Q  + +    K++T  P       +R  L    I GG   + 
Sbjct:    81 LTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEP 140

Query:   330 QMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQI 389
             Q+  L +G D+VVGTPGR+ DL   GHL L      VLDEAD +L  G+   I+R+ +QI
Sbjct:   141 QIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQI 200

Query:   390 PKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH 440
             P   +D    Q ++ SAT+ D  +  +A   M  PT +  + E      VH
Sbjct:   201 P---ADR---QSMLFSATMPD-PIITLARTFMVRPTHI--RAEAPHSSAVH 242

 Score = 128 (50.1 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
 Identities = 27/53 (50%), Positives = 35/53 (66%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             D + A D A  GIDI  +  +IN   P+D+  YVHRIGR GRA R G+A++LV
Sbjct:   322 DVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 374

 Score = 107 (42.7 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query:     2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             + F ++GV  EI +A+ E     P  +Q   +PL L G DV+  A TG GKT AF +P++
Sbjct:    10 STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 69

Query:    62 Q 62
             Q
Sbjct:    70 Q 70


>DICTYBASE|DDB_G0292992 [details] [associations]
            symbol:helA "putative RNA helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
            GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
            RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
            EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
            OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
        Length = 1091

 Score = 180 (68.4 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
 Identities = 45/124 (36%), Positives = 78/124 (62%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA QTF  +   K F    ++R +LI+GG +++DQ + L+   DI++ TP
Sbjct:   302 RAVILSPTRELAIQTFKVV---KDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATP 358

Query:   346 GR-MEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             GR M  L+  G +SL+  ++ V DEAD L + G+    +++ + + K+ S+ +  Q ++ 
Sbjct:   359 GRLMHHLLETG-MSLSKVQYIVFDEADRLFEMGFN---EQLTEILSKL-SENR--QTLLF 411

Query:   405 SATL 408
             SATL
Sbjct:   412 SATL 415

 Score = 135 (52.6 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+ M +   + KA+ +  + +PT +Q ++IP+IL G D++  A TGSGKTGAF +P+IQ
Sbjct:   232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQ 290

 Score = 122 (48.0 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
 Identities = 31/70 (44%), Positives = 41/70 (58%)

Query:   456 RLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
             + RSH Q   +   D A  GIDI  L  +IN   P  +  ++HR+GRV RA R G+A SL
Sbjct:   542 KFRSH-QVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSL 600

Query:   516 VSTVPEKVWY 525
             VS  P++V Y
Sbjct:   601 VS--PDEVPY 608

 Score = 41 (19.5 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query:   174 NNKQFDNYGEAFGMHD 189
             +N  FDN G+ F   D
Sbjct:   150 DNSNFDNNGDQFNSED 165


>CGD|CAL0004095 [details] [associations]
            symbol:TIF species:5476 "Candida albicans" [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 202 (76.2 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 51/164 (31%), Positives = 86/164 (52%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA+I+ P+RELA Q  N I     ++   K+     IGG ++ D +    SGV IVVG
Sbjct:    91 ATQALILAPTRELALQIKNVITAIGLYL---KVTVHASIGGTSMSDDIEAFRSGVQIVVG 147

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D+I   +      + F+LDEAD +L  G+   I  + + +P+ T      Q+++
Sbjct:   148 TPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT------QIVL 201

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
              SAT+   DV ++  + M  P  + +K ++   E +    + ++
Sbjct:   202 LSATMPQ-DVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE 244

 Score = 115 (45.5 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP +K NY+HRIGR GR  R G+AI+ V+
Sbjct:   325 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 367

 Score = 93 (37.8 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++ + P I + +    +  P+ +Q  AI  I  G DVL  A++G+GKT  F +  +Q 
Sbjct:    25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query:    64 VCETLK 69
             + E  K
Sbjct:    85 INENEK 90


>UNIPROTKB|P87206 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:237561 "Candida albicans SC5314" [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
            EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 202 (76.2 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 51/164 (31%), Positives = 86/164 (52%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA+I+ P+RELA Q  N I     ++   K+     IGG ++ D +    SGV IVVG
Sbjct:    91 ATQALILAPTRELALQIKNVITAIGLYL---KVTVHASIGGTSMSDDIEAFRSGVQIVVG 147

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D+I   +      + F+LDEAD +L  G+   I  + + +P+ T      Q+++
Sbjct:   148 TPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETT------QIVL 201

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
              SAT+   DV ++  + M  P  + +K ++   E +    + ++
Sbjct:   202 LSATMPQ-DVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE 244

 Score = 115 (45.5 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP +K NY+HRIGR GR  R G+AI+ V+
Sbjct:   325 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 367

 Score = 93 (37.8 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++ + P I + +    +  P+ +Q  AI  I  G DVL  A++G+GKT  F +  +Q 
Sbjct:    25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84

Query:    64 VCETLK 69
             + E  K
Sbjct:    85 INENEK 90


>UNIPROTKB|Q8EE19 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 159 (61.0 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 48/176 (27%), Positives = 90/176 (51%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             ++II+ P+RELA Q    I ++ K++  P +  + + GGV+   Q   L  GVD++V TP
Sbjct:    75 RSIILTPTRELALQVEQNINQYAKYL--P-LTAMAMYGGVDAAPQKKRLIEGVDLLVATP 131

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+ +   +        VLDEAD +L  G+   I+ + +++P+      + Q ++ S
Sbjct:   132 GRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPE------QRQNLLFS 185

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHI 461
             ATL    VK +A+  +     +++  ++A    +   +  +D  +      L SH+
Sbjct:   186 ATLSK-QVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSA---LLSHL 237

 Score = 140 (54.3 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F ++G+   + KAV E+ +  PT +Q +AIP IL G +VL AA+TG+GKT +F LP++
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

 Score = 122 (48.0 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 25/43 (58%), Positives = 29/43 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  L  +IN  LPD+  +Y+HRIGR GRA   G AIS VS
Sbjct:   306 GIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS 348

 Score = 40 (19.1 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query:   183 EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             EA  M D+ G + D++N+     +  Q+L  +  +S+Q+K
Sbjct:   155 EADRMLDM-GFIEDINNIIEKLPEQRQNLLFSATLSKQVK 193


>TIGR_CMR|SO_2571 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 159 (61.0 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 48/176 (27%), Positives = 90/176 (51%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             ++II+ P+RELA Q    I ++ K++  P +  + + GGV+   Q   L  GVD++V TP
Sbjct:    75 RSIILTPTRELALQVEQNINQYAKYL--P-LTAMAMYGGVDAAPQKKRLIEGVDLLVATP 131

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+ +   +        VLDEAD +L  G+   I+ + +++P+      + Q ++ S
Sbjct:   132 GRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPE------QRQNLLFS 185

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHI 461
             ATL    VK +A+  +     +++  ++A    +   +  +D  +      L SH+
Sbjct:   186 ATLSK-QVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSA---LLSHL 237

 Score = 140 (54.3 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F ++G+   + KAV E+ +  PT +Q +AIP IL G +VL AA+TG+GKT +F LP++
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

 Score = 122 (48.0 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
 Identities = 25/43 (58%), Positives = 29/43 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  L  +IN  LPD+  +Y+HRIGR GRA   G AIS VS
Sbjct:   306 GIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVS 348

 Score = 40 (19.1 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query:   183 EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             EA  M D+ G + D++N+     +  Q+L  +  +S+Q+K
Sbjct:   155 EADRMLDM-GFIEDINNIIEKLPEQRQNLLFSATLSKQVK 193


>ZFIN|ZDB-GENE-990415-272 [details] [associations]
            symbol:vasa "vasa homolog" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
            EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
            ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
            GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
            NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
        Length = 716

 Score = 189 (71.6 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
 Identities = 57/182 (31%), Positives = 98/182 (53%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+AII+ P+REL  Q +   ++ +KF     +R +++ GG+N    +  +  G +++  T
Sbjct:   355 PEAIIVAPTRELINQIY---LEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 411

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQI--PKITSDGKRLQMI 402
             PGR+ DLI  G + L+  R+ VLDEAD +L  G+      M K +  P + S  +R Q +
Sbjct:   412 PGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFE---PEMRKLVASPGMPSKEER-QTL 467

Query:   403 VCSATLHDFDVKKMAERLM---YFPTWVDLKGEDAVPETVHHVVVKIDP--QQDETWGRL 457
             + SAT  + D+++MA   +   Y    V + G  A  + V   VV++D   ++D+    L
Sbjct:   468 MFSATYPE-DIQRMAADFLKVDYIFLAVGVVG-GACSD-VEQTVVQVDQYSKRDQLLELL 524

Query:   458 RS 459
             R+
Sbjct:   525 RA 526

 Score = 143 (55.4 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FEE G+   + K V +  ++ PT VQ   IP+I  G D++  A+TGSGKT AF LPI+Q
Sbjct:   279 FEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 337

 Score = 94 (38.1 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521
             A  G+DI  +  ++N  +P     YVHRIGR GR    G A+S  +  PE
Sbjct:   589 AARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN--PE 636


>DICTYBASE|DDB_G0281925 [details] [associations]
            symbol:DDB_G0281925 "DEAD/DEAH box helicase"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
            ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
            GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
            Uniprot:Q54T87
        Length = 586

 Score = 210 (79.0 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 59/168 (35%), Positives = 91/168 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P  +++ P+RELA+Q   ++ K    I    IR+L   GG+   DQ  +L +GVDIV+GT
Sbjct:   185 PLVLVMAPTRELAQQ-IEEVCKTS--IRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGT 241

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL+   HLS    ++ VLDEAD +L  G+   I+ +  QIPK     +R Q ++ 
Sbjct:   242 PGRLNDLLRKHHLSSV--QYLVLDEADRMLDMGFMPQIESLIDQIPK-----ER-QTLMF 293

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE-TVHHVVVKIDPQQD 451
             SAT    +VK +A + +  P  + +  ++      V   +V ID   D
Sbjct:   294 SATWPK-EVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSD 340

 Score = 106 (42.4 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D A  G+DI  +  + N  LP +  +YVHRIGR GRA + G A S V+T
Sbjct:   417 ATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTT 467

 Score = 103 (41.3 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 21/41 (51%), Positives = 31/41 (75%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP-IIQIV 64
             PT +Q ++ P+ILGG D++  A TGSGKT AF LP +++I+
Sbjct:   133 PTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKII 173


>FB|FBgn0004419 [details] [associations]
            symbol:me31B "maternal expression at 31B" species:7227
            "Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
            processing body assembly" evidence=IMP] [GO:0005875 "microtubule
            associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
            evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
            GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
            PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
            ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
            STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
            GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
            InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
            GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
            Uniprot:P23128
        Length = 459

 Score = 182 (69.1 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 49/147 (33%), Positives = 80/147 (54%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+++ P+RELA QT    I+  K +    IR ++  GG  +KD +  +   V +++ TP
Sbjct:   128 QALVMVPTRELALQTSQICIELAKHLD---IRVMVTTGGTILKDDILRIYQKVQLIIATP 184

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL+      ++HCR  VLDEAD LL   +  ++D +  ++PK   D    Q+++ S
Sbjct:   185 GRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPK---DP---QILLFS 238

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGE 432
             AT     VK   E+ +  P  ++L  E
Sbjct:   239 ATF-PLTVKNFMEKHLREPYEINLMEE 264

 Score = 137 (53.3 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FEE  +  E+   + E  W  P+ +Q  AIP+ L G DVL  A+ G+GKTGA+C+P+++ 
Sbjct:    60 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query:    64 VCET 67
             +  T
Sbjct:   120 IDPT 123

 Score = 97 (39.2 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN   P     Y+HRIGR GR   +G+AI+L++
Sbjct:   358 GIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLIT 400

 Score = 43 (20.2 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query:   481 LPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNT 540
             L   IN+   +D+ + +HRI +      +G  I  +  V +   Y     A+ G  C+N+
Sbjct:   392 LGIAINLITYEDRFD-LHRIEK-----ELGTEIKPIPKVIDPALYVANVGASVGDTCNNS 445

Query:   541 QLTD 544
              L +
Sbjct:   446 DLNN 449


>TAIR|locus:2176192 [details] [associations]
            symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
            OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
            RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
            SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
            EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
            GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
            ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
            Uniprot:Q9LU46
        Length = 591

 Score = 205 (77.2 bits), Expect = 3.5e-26, Sum P(3) = 3.5e-26
 Identities = 41/97 (42%), Positives = 64/97 (65%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +I+ PSRELA QT+  + +F   + +   P +R LL IGG++++ Q+ V+  GV IV
Sbjct:   223 PIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIV 282

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
             V TPGR++D+++   +SL  CR+  LDEAD L+  G+
Sbjct:   283 VATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGF 319

 Score = 108 (43.1 bits), Expect = 3.5e-26, Sum P(3) = 3.5e-26
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P +  NYVHRIGR GR  + G+A + ++
Sbjct:   449 DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502

 Score = 106 (42.4 bits), Expect = 3.5e-26, Sum P(3) = 3.5e-26
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F++M     +   ++E   + PT +Q + +P+IL G D++  A TGSGKT  F LP+I I
Sbjct:   148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207

Query:    64 VCE 66
               +
Sbjct:   208 ALQ 210


>WB|WBGene00017162 [details] [associations]
            symbol:ddx-23 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0010172 "embryonic body morphogenesis" evidence=IMP]
            [GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0040021 "hermaphrodite germ-line sex determination"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
            GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
            GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
            OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
            ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
            EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
            CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
            Uniprot:Q95QN2
        Length = 730

 Score = 187 (70.9 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
 Identities = 39/106 (36%), Positives = 65/106 (61%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P AII+ P+RELA+Q   +  KF K +    I+ + +IGG + +DQ   L  GV++V+ T
Sbjct:   379 PYAIIMAPTRELAQQIEEETNKFGKLLG---IKTVSVIGGASREDQGMKLRMGVEVVIAT 435

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             PGR+ D++   +L L  C + +LDEAD +L  G+   + ++ + +P
Sbjct:   436 PGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481

 Score = 140 (54.3 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             +EE G   E+ +AV+E+ +L PT +Q +AIP+ L   DV+  AETGSGKT AF LP++
Sbjct:   303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLL 360

 Score = 96 (38.9 bits), Expect = 5.6e-26, Sum P(3) = 5.6e-26
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query:   463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             +D + A D A  GID+  +  ++N  +     +Y HRIGR GRA + G AI+ ++     
Sbjct:   624 SDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTA 683

Query:   523 VWY 525
             V++
Sbjct:   684 VYF 686


>TIGR_CMR|BA_4509 [details] [associations]
            symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
            RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
            ProteinModelPortal:Q81LV0 SMR:Q81LV0
            EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
            EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
            GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
            ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
            BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
        Length = 436

 Score = 201 (75.8 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
 Identities = 50/160 (31%), Positives = 84/160 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFIT-DPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             Q +I  P+RELA+Q + +I+K  KF   D  I    +IGG + +  +  L     IVVGT
Sbjct:    74 QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHIVVGT 133

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR++DL+    L +      ++DEAD +L  G+ + +D++  ++PK       LQM+V 
Sbjct:   134 PGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPK------NLQMLVF 187

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV 444
             SAT+    +K   ++ M  P  + +  +      + H +V
Sbjct:   188 SATIPQ-KLKPFLKKYMENPEHIHINPKQVAAGNIEHYLV 226

 Score = 114 (45.2 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  GIDI G+  +IN  LP D   +VHR+GR  RA   G+A+++     E+
Sbjct:   302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEE 356

 Score = 94 (38.1 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F +    P +  AV E+ +  PT +Q +  P++  G  V+  ++TGSGKT A+ LP +  
Sbjct:     6 FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65

Query:    64 VCETLKEI 71
             +    +E+
Sbjct:    66 INPGREEV 73

 Score = 45 (20.9 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query:   183 EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             EA  M D+ G + D+D +     KN Q L  +  I Q+LK
Sbjct:   158 EADLMLDM-GFIHDVDKIAARMPKNLQMLVFSATIPQKLK 196


>WB|WBGene00002083 [details] [associations]
            symbol:inf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
            GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
            EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
            UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
            DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
            PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
            EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
            UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
            InParanoid:P27639 NextBio:890522 Uniprot:P27639
        Length = 402

 Score = 207 (77.9 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
 Identities = 52/169 (30%), Positives = 95/169 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+++ P+RELA+Q    +    +++    +  L  IGG +V+D    L +G+ +VVGTP
Sbjct:    99 QALVMAPTRELAQQIQKVMSALGEYLN---VNILPCIGGTSVRDDQRKLEAGIHVVVGTP 155

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I+   L  +  + FVLDEAD +L +G+ + I  + + +P+   D   +Q+++ S
Sbjct:   156 GRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQ---D---VQVVLLS 209

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETW 454
             AT+   +V  +  R M  P  + +K ++   E +    + +  Q+DE W
Sbjct:   210 ATMPS-EVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINV--QKDE-W 254

 Score = 115 (45.5 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+
Sbjct:   331 GIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVT 373

 Score = 83 (34.3 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F++M +  E+ + +    +  P+ +Q  AI     G DV+  A++G+GKT  F + I+Q
Sbjct:    30 SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 200 (75.5 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
 Identities = 50/187 (26%), Positives = 94/187 (50%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             + P+ +++ P+RELA QT+  +      I    ++ +++ GG   K + +  +    +++
Sbjct:   235 SVPRVLVVSPTRELAIQTYENL---NSLIQGTNLKAVVVYGGAP-KSEQARAAKNASVII 290

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             GTPGR+ DLI+ G +  +   + VLDEAD +L  G+   I  +    P  T +G R Q +
Sbjct:   291 GTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSR-QTV 349

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGED-AVPETVHHVV-VKIDPQQDETW--GRLR 458
               SAT  +  V+ +A   +  P  + +  ++ A  + +  +V +  DP+  E      LR
Sbjct:   350 FFSATWPE-SVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLR 408

Query:   459 SHIQTDG 465
              H+ + G
Sbjct:   409 KHLSSGG 415

 Score = 109 (43.4 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527
             A D A  G+DI  +  +IN+T P    +YVHRIGR GRA   G AI+  +  P+   + G
Sbjct:   472 ATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFT--PQDKSHAG 529

Query:   528 E 528
             E
Sbjct:   530 E 530

 Score = 107 (42.7 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+E+ V  ++ + ++  ++  PT +QA   P +L G DV+  AETGSGKT AF +P +Q
Sbjct:   169 FDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225


>POMBASE|SPCC10H11.01 [details] [associations]
            symbol:prp11 "ATP-dependent RNA helicase Prp11"
            species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
            RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
            IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
            GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
            NextBio:20800113 Uniprot:Q9P7C7
        Length = 1014

 Score = 200 (75.5 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
 Identities = 61/184 (33%), Positives = 96/184 (52%)

Query:   277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
             P+K     P AII+ P+RELA Q F +   F K +    IR     GG  +KDQ++ L  
Sbjct:   485 PLK-TGEGPIAIIMTPTRELAVQIFRECKPFLKLLN---IRACCAYGGAPIKDQIADLKR 540

Query:   337 GVDIVVGTPGRMEDLISG--GHLSLTH-CRFFVLDEADGLLKQGYGNLIDRMHKQIPKIT 393
             G +IVV TPGRM D++S   G ++  H C + VLDEAD +   G+   + R+   I  I 
Sbjct:   541 GAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRI---INNIR 597

Query:   394 SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDET 453
              D    Q ++ SAT     ++ +A +++  P  + + G   V   V  +V ++ P++ + 
Sbjct:   598 PDR---QTVLFSATFPRA-MEALARKVLKKPVEITVGGRSVVASEVEQIV-EVRPEESK- 651

Query:   454 WGRL 457
             + RL
Sbjct:   652 FSRL 655

 Score = 116 (45.9 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             + ++ + G+  +    +  + +  PT +QA+AIP I  G DV+  A+TGSGKT AF LP+
Sbjct:   417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476

Query:    61 IQ 62
              +
Sbjct:   477 FR 478

 Score = 110 (43.8 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             G+D+  L  ++N   P+   +YVHR+GR GRA   G+A++ ++   EK
Sbjct:   731 GLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEK 778


>CGD|CAL0005725 [details] [associations]
            symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 200 (75.5 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 55/174 (31%), Positives = 94/174 (54%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             N  P  +I+ P+RELA Q   +I+ F K   +  +R     GG ++++Q++ L  GV+I+
Sbjct:   365 NQGPIGLILSPTRELALQIEKEILNFTK--RNNNLRVCCCYGGSSIENQINELKKGVEII 422

Query:   342 VGTPGRMEDLI---SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
             VGTPGR+ DL+   SG  L+L  C F VLDEAD +   G+     +++K + +I  D   
Sbjct:   423 VGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFE---PQVNKILTQIRPDR-- 477

Query:   399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDE 452
              Q ++ SAT     ++ +A++++  P  + + G   V   +   VV  +   +E
Sbjct:   478 -QTVLFSATFPR-KMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEE 529

 Score = 107 (42.7 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV-PEKVW 524
             A  G+D+  L  +IN   P+   +YVHR+GR GRA   G AI+ VS+  P++V+
Sbjct:   616 AARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVF 669

 Score = 99 (39.9 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 18/38 (47%), Positives = 30/38 (78%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             P+ +Q++A+P IL G DV+  A+TGSGKT ++ LP+++
Sbjct:   317 PSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR 354

 Score = 58 (25.5 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query:   581 LNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQMEPSVNKLSKLESK 636
             L ++   +D KLE  A++F  KV  G+++++ G   +      E   NKL KLE +
Sbjct:   675 LKLSHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQEVRDNKL-KLEKQ 729


>UNIPROTKB|Q5ADL0 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 200 (75.5 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 55/174 (31%), Positives = 94/174 (54%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             N  P  +I+ P+RELA Q   +I+ F K   +  +R     GG ++++Q++ L  GV+I+
Sbjct:   365 NQGPIGLILSPTRELALQIEKEILNFTK--RNNNLRVCCCYGGSSIENQINELKKGVEII 422

Query:   342 VGTPGRMEDLI---SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
             VGTPGR+ DL+   SG  L+L  C F VLDEAD +   G+     +++K + +I  D   
Sbjct:   423 VGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFE---PQVNKILTQIRPDR-- 477

Query:   399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDE 452
              Q ++ SAT     ++ +A++++  P  + + G   V   +   VV  +   +E
Sbjct:   478 -QTVLFSATFPR-KMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEE 529

 Score = 107 (42.7 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV-PEKVW 524
             A  G+D+  L  +IN   P+   +YVHR+GR GRA   G AI+ VS+  P++V+
Sbjct:   616 AARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVF 669

 Score = 99 (39.9 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 18/38 (47%), Positives = 30/38 (78%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             P+ +Q++A+P IL G DV+  A+TGSGKT ++ LP+++
Sbjct:   317 PSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR 354

 Score = 58 (25.5 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query:   581 LNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQMEPSVNKLSKLESK 636
             L ++   +D KLE  A++F  KV  G+++++ G   +      E   NKL KLE +
Sbjct:   675 LKLSHSDIDPKLEEIANKFVTKVKAGKEKISSGFGGKGLDNLQEVRDNKL-KLEKQ 729


>UNIPROTKB|Q5ZLB0 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
            HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
            EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
            RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
            Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
            InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
        Length = 453

 Score = 167 (63.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
 Identities = 30/64 (46%), Positives = 47/64 (73%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+++GV   + +A +++ W +PT +Q EAIP+ L G D++  AETGSGKTGAF LPI+Q
Sbjct:    26 SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85

Query:    63 IVCE 66
              + +
Sbjct:    86 ALLD 89

 Score = 142 (55.0 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
 Identities = 35/113 (30%), Positives = 61/113 (53%)

Query:   283 NAPQ---AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD 339
             +APQ   A+++ P+RELA Q   Q   F+   +   +   +I+GG++   Q   L+    
Sbjct:    89 DAPQRLFALVLTPTRELAFQISEQ---FEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 145

Query:   340 IVVGTPGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             I++ TPGR+ D +      +L   +F V+DEAD +L   +   +D++ K IP+
Sbjct:   146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPR 198

 Score = 103 (41.3 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  +IN  +P    +Y+HR+GR  RA R G +I+ V+
Sbjct:   320 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 369

 Score = 41 (19.5 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query:   175 NKQFDNYGEAFGMHD-VIGCLLDLDNMTVAFTKNGQHLGLAF--NISQQLKNSAFYPAVV 231
             ++QF+  G + G+H  VI   +D  + ++A  K   H+ +A    +   L+N+  +    
Sbjct:   110 SEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKK-PHIIIATPGRLVDHLENTKGFNLRA 168

Query:   232 LK 233
             LK
Sbjct:   169 LK 170


>CGD|CAL0001638 [details] [associations]
            symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
            evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
            RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
            SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
            KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
        Length = 399

 Score = 174 (66.3 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
 Identities = 51/168 (30%), Positives = 87/168 (51%)

Query:   269 ESADVSAGPVKLVNNAP---QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV 325
             ++A  S G +++++      QA+I+ P+RELA Q  N +     ++    I     IGG 
Sbjct:    76 KTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMN---IHTHACIGGK 132

Query:   326 NVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRM 385
             NV + +  L  G  IV GTPGR+ D+I   +L   + +  +LDEAD L  +G+   I  +
Sbjct:   133 NVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEI 192

Query:   386 HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433
             +K +P        +Q++V SATL   +V +M  +    P  + +K ++
Sbjct:   193 YKHLPP------SVQVVVVSATLPR-EVLEMTSKFTTDPVKILVKRDE 233

 Score = 127 (49.8 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
 Identities = 31/63 (49%), Positives = 38/63 (60%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G  R  I TD V AR     GID+  +  +IN  LP DK NY+HRIGR GR  R G AI+
Sbjct:   314 GNSRVLISTD-VWAR-----GIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAIN 367

Query:   515 LVS 517
             L++
Sbjct:   368 LIT 370

 Score = 106 (42.4 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
 Identities = 20/67 (29%), Positives = 39/67 (58%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FE M + P++ K +    +  P+ +Q+ AI  I+ G D +  A++G+GKT  F + ++++
Sbjct:    28 FESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87

Query:    64 VCETLKE 70
             +    KE
Sbjct:    88 IDTKSKE 94

 Score = 40 (19.1 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query:   246 FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLV 281
             +KH PP   + V +A         ++  +  PVK++
Sbjct:   193 YKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKIL 228


>RGD|1311758 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
            "defense response to virus" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
            RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
            Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
            UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
            Uniprot:B2RYL8
        Length = 622

 Score = 187 (70.9 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   258 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 317

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   318 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 371

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   372 LLFSATMPK-KIQNFAKSALVKPVTINV 398

 Score = 117 (46.2 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM +   I + +++   L PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   182 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   242 FCLEQEKRL 250

 Score = 112 (44.5 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537


>WB|WBGene00019245 [details] [associations]
            symbol:sacy-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
            GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
            OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
            ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
            EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
            UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
            NextBio:875413 Uniprot:Q9N5K1
        Length = 630

 Score = 184 (69.8 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
 Identities = 41/100 (41%), Positives = 61/100 (61%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGV 338
             +  P  +II PSRELA Q F+ II+    +     P++R  L IGGV + +Q   +  G+
Sbjct:   264 SEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGI 323

Query:   339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
              IVV TPGR+ D+++   ++L  CR+ VLDEAD +L  G+
Sbjct:   324 HIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGF 363

 Score = 133 (51.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521
             + D + A D A  G+D  G+  +IN  +P+D  NYVHRIGR GR+ R GLA + ++   E
Sbjct:   491 EKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSE 550

 Score = 99 (39.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
             PT +Q + IP+ L G D++  A TGSGKT  F LP++    E
Sbjct:   213 PTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLE 254


>UNIPROTKB|E2R4Y9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
        Length = 623

 Score = 192 (72.6 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
 Identities = 47/167 (28%), Positives = 95/167 (56%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             +  P A+I+ P+RELA Q  NQ  +    +  P+++ +L++GG+ +  Q+  L   V ++
Sbjct:   270 SKTPSALILTPTRELAIQIENQAKELMSGL--PRMKTVLLVGGLPLPPQLYRLRQHVKVI 327

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             + TPGR+ D+I    + L   +  V+DEAD +LK G+   +  + + +P   +D    Q 
Sbjct:   328 IATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVP---NDS---QT 381

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP-ETVHHVVVKID 447
             I+ SAT+    ++++A +L++ P  + + GE  +P  +V  +++ ++
Sbjct:   382 ILVSATIPT-SIEQLASQLLHNPVRI-ITGEKNLPCSSVRQIILWVE 426

 Score = 124 (48.7 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-Q 62
             FE  G    +   ++   + +PT +Q + IP+ L G DVL +A+TGSGKT AF LP+I +
Sbjct:   206 FEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITR 265

Query:    63 IVCET 67
              +CE+
Sbjct:   266 ALCES 270

 Score = 99 (39.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
 Identities = 28/109 (25%), Positives = 56/109 (51%)

Query:   426 WVDLK-GEDAVPETVHHVV----VKIDPQQDETWGR--LRSHIQTDG--VHARDNARPGI 476
             +VD K G D + E V  +     V I  ++ +T  +  L+  ++ D   V +      G+
Sbjct:   451 FVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGL 510

Query:   477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             D+  +  ++N  +P     YVH++GRVGR  + G AI+ ++   +++++
Sbjct:   511 DLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 559


>UNIPROTKB|Q8EHT1 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 173 (66.0 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
 Identities = 50/153 (32%), Positives = 83/153 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKF-KKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             P A+++ P+RELA Q    +     +  T   +   L+ GGV ++ Q++ LS+   +VV 
Sbjct:    96 PLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVA 155

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ DL +  H+SL   +  VLDEAD LL+ G+   + ++   +PK      R Q ++
Sbjct:   156 TPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK------RKQTLL 209

Query:   404 CSATLHDFDVKKMAERLMYF-PTWVDLKGEDAV 435
              SATL +  +  +A +L+   P  V+    +AV
Sbjct:   210 FSATLPEA-LDSLAGKLLTNDPLKVEASTRNAV 241

 Score = 119 (46.9 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F E+G+   + KA+       PT VQ  AIP IL G D+L  ++TGSGKT AF LP++QI
Sbjct:    19 FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77

Query:    64 VCETL 68
             + + +
Sbjct:    78 LWQQI 82

 Score = 117 (46.2 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
 Identities = 26/49 (53%), Positives = 29/49 (59%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D    GI +  LP +IN+ LP     YVHRIGR  RA   GLAISLV
Sbjct:   326 ATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374


>TIGR_CMR|SO_1136 [details] [associations]
            symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
            KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
            Uniprot:Q8EHT1
        Length = 447

 Score = 173 (66.0 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
 Identities = 50/153 (32%), Positives = 83/153 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKF-KKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             P A+++ P+RELA Q    +     +  T   +   L+ GGV ++ Q++ LS+   +VV 
Sbjct:    96 PLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVA 155

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ DL +  H+SL   +  VLDEAD LL+ G+   + ++   +PK      R Q ++
Sbjct:   156 TPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK------RKQTLL 209

Query:   404 CSATLHDFDVKKMAERLMYF-PTWVDLKGEDAV 435
              SATL +  +  +A +L+   P  V+    +AV
Sbjct:   210 FSATLPEA-LDSLAGKLLTNDPLKVEASTRNAV 241

 Score = 119 (46.9 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F E+G+   + KA+       PT VQ  AIP IL G D+L  ++TGSGKT AF LP++QI
Sbjct:    19 FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77

Query:    64 VCETL 68
             + + +
Sbjct:    78 LWQQI 82

 Score = 117 (46.2 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
 Identities = 26/49 (53%), Positives = 29/49 (59%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D    GI +  LP +IN+ LP     YVHRIGR  RA   GLAISLV
Sbjct:   326 ATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374


>UNIPROTKB|Q9H0S4 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
            processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
            EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
            EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
            IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
            PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
            MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
            SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
            Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
            KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
            HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
            PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
            ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
            NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
            Genevestigator:Q9H0S4 Uniprot:Q9H0S4
        Length = 455

 Score = 169 (64.5 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++GV   + +A +++ W  PT +Q EAIPL L G D++  AETGSGKTGAF LPI+  
Sbjct:    26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85

Query:    64 VCET 67
             + ET
Sbjct:    86 LLET 89

 Score = 135 (52.6 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
 Identities = 31/106 (29%), Positives = 58/106 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA Q   Q   F+   +   ++  +I+GG++   Q   L+    I++ TPG
Sbjct:    95 ALVLTPTRELAFQISEQ---FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPG 151

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             R+ D +      +L   ++ V+DEAD +L   +   +D++ K IP+
Sbjct:   152 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

 Score = 105 (42.0 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  ++N  +P    +Y+HR+GR  RA R G AI+ V+
Sbjct:   319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368


>MGI|MGI:1920185 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
            RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
            SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
            PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
            KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
            CleanEx:MM_DDX41 Genevestigator:Q91VN6
            GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
        Length = 622

 Score = 187 (70.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   258 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 317

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   318 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 371

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   372 LLFSATMPK-KIQNFAKSALVKPVTINV 398

 Score = 115 (45.5 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++   L PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   242 FCLEQEKRL 250

 Score = 112 (44.5 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537


>UNIPROTKB|Q90ZF6 [details] [associations]
            symbol:olvas "VASA" species:8090 "Oryzias latipes"
            [GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
            RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
            SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
        Length = 617

 Score = 195 (73.7 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 48/133 (36%), Positives = 79/133 (59%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+A+I+ P+REL  Q + +  KF  F T   +R +++ GGVN   QM  +  G +++ GT
Sbjct:   259 PEAVIVAPTRELINQIYQEARKFS-FGTC--VRPVVVYGGVNTGYQMREIEKGCNVLCGT 315

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+I  G + L+  R  VLDEAD +L  G+   + R+    P + S  +R Q ++ 
Sbjct:   316 PGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLVGS-PGMPSKEER-QTLMF 373

Query:   405 SATLHDFDVKKMA 417
             SAT  + D++++A
Sbjct:   374 SATFPE-DIQRLA 385

 Score = 122 (48.0 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FEE  +   +   +    ++ PT VQ   +P+I  G D++  A+TGSGKT AF LPI+Q
Sbjct:   183 FEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQ 241

 Score = 96 (38.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DI  +  ++N  LP+   +YVHRIGR GR    G A+S
Sbjct:   493 ASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVS 535

 Score = 41 (19.5 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query:   298 EQTFNQIIKFKK 309
             EQTF Q+ KF K
Sbjct:   409 EQTFLQVTKFNK 420


>UNIPROTKB|E2RN03 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
            NextBio:20853120 Uniprot:E2RN03
        Length = 482

 Score = 169 (64.5 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++GV   + +A +++ W  PT +Q EAIPL L G D++  AETGSGKTGAF LPI+  
Sbjct:    52 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 111

Query:    64 VCET 67
             + ET
Sbjct:   112 LLET 115

 Score = 136 (52.9 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 32/106 (30%), Positives = 58/106 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA Q   Q   F+   +   ++  +I+GG++   Q   L+    IV+ TPG
Sbjct:   121 ALVLTPTRELAFQISEQ---FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPG 177

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             R+ D +      +L   ++ V+DEAD +L   +   +D++ K IP+
Sbjct:   178 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 223

 Score = 105 (42.0 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  ++N  +P    +Y+HR+GR  RA R G AI+ V+
Sbjct:   345 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 394


>RGD|1559513 [details] [associations]
            symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
            IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
            NextBio:667517 Uniprot:D4ADJ9
        Length = 621

 Score = 185 (70.2 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
 Identities = 49/148 (33%), Positives = 80/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +   L IGGV++K+QM  +  GV I+
Sbjct:   257 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIM 316

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   317 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 370

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   371 LLFSATMPK-KIQNFAKSALVKPVTINV 397

 Score = 117 (46.2 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM +   I + +++   L PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   181 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   241 FCLEQEKRL 249

 Score = 112 (44.5 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   483 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 203 (76.5 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
 Identities = 58/172 (33%), Positives = 90/172 (52%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P A++I P+RELA Q ++Q++KF + +    I+   I GGV   +Q   L S   +VV T
Sbjct:   147 PLAVVISPTRELAMQIYDQLVKFAEKVD---IQVACIFGGVKKDEQREALKSAA-VVVAT 202

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR++DL + G L L   ++ VLDEAD +L +G+   I  +   +P      KR Q ++ 
Sbjct:   203 PGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPV----SKR-QTVMF 257

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGE-DAVPET---VHHVVVKIDPQQDE 452
             +AT     V+ +A   M  P  V + G+  A P     +  VV  + P + E
Sbjct:   258 TATWPPI-VRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKE 308

 Score = 104 (41.7 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
             A D A  G+DI  +  ++N+T P    +YVHRIGR GRA   G AI+L
Sbjct:   379 ATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITL 426

 Score = 99 (39.9 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
 Identities = 28/64 (43%), Positives = 35/64 (54%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIXXXXXXXXXXXXV 84
             PT +Q+   PL+  G DV+  AETGSGKT AF LP ++ V + LK              V
Sbjct:    96 PTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLD-LK---TKQKSCRPLAVV 151

Query:    85 ISPT 88
             ISPT
Sbjct:   152 ISPT 155


>POMBASE|SPAC1F5.10 [details] [associations]
            symbol:SPAC1F5.10 "ATP-dependent RNA helicase
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
            OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
            ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
            EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
            NextBio:20802696 Uniprot:Q10055
        Length = 394

 Score = 181 (68.8 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
 Identities = 49/165 (29%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA Q  N ++     +    ++    IGG +V + +  L  G  +V GTP
Sbjct:    91 QALILSPTRELAVQIQNVVLALGDHMN---VQCHACIGGTSVGNDIKKLDYGQHVVSGTP 147

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I   +L   + +  +LDEAD LL QG+   I  +++ +P  T      Q++V S
Sbjct:   148 GRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT------QVVVVS 201

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             ATL   DV +M  +    P  + +K ++   E +    + ++ ++
Sbjct:   202 ATLPQ-DVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEE 245

 Score = 118 (46.6 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
 Identities = 30/68 (44%), Positives = 40/68 (58%)

Query:   450 QDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509
             QD   G  R  I TD + AR     GID+  +  +IN  LP ++ NY+HRIGR GR  R 
Sbjct:   304 QDFRQGNSRVLICTD-IWAR-----GIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRK 357

Query:   510 GLAISLVS 517
             G+AI+ V+
Sbjct:   358 GVAINFVT 365

 Score = 103 (41.3 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
 Identities = 27/102 (26%), Positives = 56/102 (54%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +++FEEM +  ++ + +    +  P+ VQ+ AI  I  G DV+  A++G+GKT  F + I
Sbjct:    20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79

Query:    61 IQIVCETLKEIXXXXXXXXXXXXVISPTWILSVWDRDTAMAI 102
             +Q +  ++++             ++SPT  L+V  ++  +A+
Sbjct:    80 LQSIDLSVRD---------TQALILSPTRELAVQIQNVVLAL 112

 Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query:    97 DTAMAITPEGLRCQSREQKEW 117
             DT + IT   + C SR + +W
Sbjct:   256 DT-LTITQAVIFCNSRRKVDW 275


>UNIPROTKB|F1NAH6 [details] [associations]
            symbol:LOC100859810 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0035458 "cellular response to interferon-beta" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
            to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
            EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
            Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
        Length = 607

 Score = 190 (71.9 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
 Identities = 41/97 (42%), Positives = 60/97 (61%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   I  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   254 PYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMM 313

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+
Sbjct:   314 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 350

 Score = 112 (44.5 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   480 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 533

 Score = 110 (43.8 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++     PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   178 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 237

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   238 FCLEQEKRL 246


>TAIR|locus:2076351 [details] [associations]
            symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
            evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
            GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
            EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
            IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
            RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
            UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
            STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
            EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
            KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
            OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
            Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
        Length = 612

 Score = 178 (67.7 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 46/137 (33%), Positives = 75/137 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P A+I+ P+RELA Q  ++    KKF     ++ ++  GG  +  Q+  L  G DI+V T
Sbjct:   230 PFAVILSPTRELACQIHDEA---KKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVAT 286

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL+    +S+   RF  LDEAD +L  G+   I ++ +Q+  +   G R Q ++ 
Sbjct:   287 PGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD-MPPRGVR-QTMLF 344

Query:   405 SATLHDFDVKKMAERLM 421
             SAT     ++++A   M
Sbjct:   345 SATFPS-QIQRLAADFM 360

 Score = 122 (48.0 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 30/84 (35%), Positives = 43/84 (51%)

Query:    17 VEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ-IVCETLKEIXXXX 75
             +    ++ PT VQ  AIP++L   D++  A+TGSGKT AFC PII  I+ +   E     
Sbjct:   166 IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGS 225

Query:    76 XXXXXXXXVISPTWILSVWDRDTA 99
                     ++SPT  L+    D A
Sbjct:   226 RAVYPFAVILSPTRELACQIHDEA 249

 Score = 113 (44.8 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 29/68 (42%), Positives = 39/68 (57%)

Query:   447 DPQQDETWGRLRSHI--QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504
             D  Q E    LRS    +T  + A D A  G+DI  +  ++N  LP+D  +YVHRIGR G
Sbjct:   441 DRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 500

Query:   505 RAERMGLA 512
             RA + G+A
Sbjct:   501 RAGKSGIA 508


>UNIPROTKB|P54475 [details] [associations]
            symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
            [GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
            SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
            GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
            HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
            BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
        Length = 438

 Score = 187 (70.9 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 51/177 (28%), Positives = 91/177 (51%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q +I  P+RELA Q + + +K  +     +IR    IGG + +  +  L     +VVGTP
Sbjct:    74 QVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTP 133

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI    LS+      V+DEAD +L  G+   +D +  ++P+   D   LQM+V S
Sbjct:   134 GRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPE---D---LQMLVFS 187

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ-QDETWGRLRSHI 461
             AT+ +  +K   ++ M  P +  ++ +      + H+++    + +D+    + SH+
Sbjct:   188 ATIPE-KLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHL 243

 Score = 116 (45.9 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 25/54 (46%), Positives = 31/54 (57%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521
             A D A  GIDI G+  +IN  LPDD   YVHR+GR  RA   G A+++     E
Sbjct:   301 ATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDE 354

 Score = 101 (40.6 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             FE   + P I  AV  + +  PTD+Q   IP +L    V+  ++TG+GKT A+ LP++  
Sbjct:     6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNK 65

Query:    64 VCETLKEI 71
             + +  K++
Sbjct:    66 I-DPAKDV 72


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 185 (70.2 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 55/152 (36%), Positives = 83/152 (54%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDI 340
             NN  QA+II P+RELA QT +Q+ K   K +   KI+ ++  GG ++KD +  L   V +
Sbjct:   197 NNVIQAVIIVPTRELALQT-SQVCKELGKHL---KIQVMVTTGGTSLKDDIMRLYQPVHL 252

Query:   341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
             +VGTPGR+ DL   G   L  C   V+DEAD LL Q +   ++ +   +P+      R Q
Sbjct:   253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPE-----SR-Q 306

Query:   401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
             +++ SAT     VK   +R +  P  ++L  E
Sbjct:   307 ILMFSATF-PVTVKDFKDRFLTNPYVINLMDE 337

 Score = 120 (47.3 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + E  +  P+ +Q E+IP+ L G D+L  A+ G+GKT AFC+P+++
Sbjct:   133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191

 Score = 103 (41.3 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P +   Y+HR+GR GR   +GLA++L++
Sbjct:   431 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT 473

 Score = 37 (18.1 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  VN   I ++++  L  IE+ L   I+Q+   ++
Sbjct:   466 GLAVN--LITYEDRFNLYRIEQELGTEIKQIPPHID 499


>SGD|S000001107 [details] [associations]
            symbol:RRP3 "Protein involved in rRNA processing"
            species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
            SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
            LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
            GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
            RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
            DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
            PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
            KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
            GermOnline:YHR065C Uniprot:P38712
        Length = 501

 Score = 153 (58.9 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 38/105 (36%), Positives = 56/105 (53%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A I+ P+RELA+Q           +    +R   I+GG+N+ DQ   L     I++ TPG
Sbjct:   152 ACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             R+ D +      SL   +F V+DEAD LL   +G ++DR+ K IP
Sbjct:   209 RLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 253

 Score = 139 (54.0 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 25/59 (42%), Positives = 43/59 (72%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             +F E+ ++PE+ +A + +++  PT +Q++AIP  L G D++  A+TGSGKT AF +PI+
Sbjct:    82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL 140

 Score = 119 (46.9 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  ++N  +P D  +Y+HR+GR  RA R G +ISLVS
Sbjct:   377 ATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426


>MGI|MGI:1915005 [details] [associations]
            symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
            GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
            GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
            EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
            ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
            PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
            Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
            InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
            Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
        Length = 455

 Score = 169 (64.5 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++GV   + +A +++ W  PT +Q EAIPL L G D++  AETGSGKTGAF LPI+  
Sbjct:    26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85

Query:    64 VCET 67
             + ET
Sbjct:    86 LLET 89

 Score = 132 (51.5 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
 Identities = 32/106 (30%), Positives = 58/106 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA Q   Q   F+   +   ++  +I+GG++   Q   L+    IV+ TPG
Sbjct:    95 ALVLTPTRELAFQISEQ---FEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPG 151

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             R+ D +      +L   ++ V+DEAD +L   +   +D++ K IP+
Sbjct:   152 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

 Score = 105 (42.0 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  ++N  +P    +Y+HR+GR  RA R G AI+ V+
Sbjct:   319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368


>UNIPROTKB|G3V727 [details] [associations]
            symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
            GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
            RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
            GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
            Uniprot:G3V727
        Length = 455

 Score = 169 (64.5 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++GV   + +A +++ W  PT +Q EAIPL L G D++  AETGSGKTGAF LPI+  
Sbjct:    26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85

Query:    64 VCET 67
             + ET
Sbjct:    86 LLET 89

 Score = 132 (51.5 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
 Identities = 32/106 (30%), Positives = 58/106 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA Q   Q   F+   +   ++  +I+GG++   Q   L+    IV+ TPG
Sbjct:    95 ALVLTPTRELAFQISEQ---FEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPG 151

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             R+ D +      +L   ++ V+DEAD +L   +   +D++ K IP+
Sbjct:   152 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

 Score = 105 (42.0 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  ++N  +P    +Y+HR+GR  RA R G AI+ V+
Sbjct:   319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368


>UNIPROTKB|Q29S22 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
            process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
            IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
            ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
            Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
            HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
        Length = 457

 Score = 169 (64.5 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++GV   + +A +++ W  PT +Q EAIPL L G D++  AETGSGKTGAF LPI+  
Sbjct:    28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87

Query:    64 VCET 67
             + ET
Sbjct:    88 LLET 91

 Score = 132 (51.5 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
 Identities = 32/106 (30%), Positives = 58/106 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA Q   Q   F+   +   ++  +I+GG++   Q   L+    IV+ TPG
Sbjct:    97 ALVLTPTRELAFQISEQ---FEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPG 153

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             R+ D +      +L   ++ V+DEAD +L   +   +D++ K IP+
Sbjct:   154 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 199

 Score = 105 (42.0 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  ++N  +P    +Y+HR+GR  RA R G AI+ V+
Sbjct:   321 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370


>UNIPROTKB|Q3MSQ8 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
            ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
        Length = 724

 Score = 175 (66.7 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
 Identities = 49/165 (29%), Positives = 88/165 (53%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+AII+ P+REL  Q +   +  +KF     +R ++I GG  +   +  +S G +I+  T
Sbjct:   364 PEAIIVAPTRELINQIY---LDARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCAT 420

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+I    + LT  R+ VLDEAD +L  G+   I+ + K    + S  +R Q ++ 
Sbjct:   421 PGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKS-SGMPSKEER-QTLMF 478

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLK-GE-DAVPETVHHVVVKID 447
             SAT     ++ +A  ++  P ++ +  G+       V  +V+++D
Sbjct:   479 SATFPS-SIQSLAREILK-PDYLFVVVGQVGGACSDVEQMVIEVD 521

 Score = 121 (47.7 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FEE  +   + K V +  ++  T +Q  +IP+I+ G D++  A+TGSGKT AF LPI+
Sbjct:   288 FEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345

 Score = 119 (46.9 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
 Identities = 33/85 (38%), Positives = 42/85 (49%)

Query:   432 EDAVPETVHHVVVKIDPQQDETWGRLRSHI--QTDGVHARDNARPGIDISGLPFIINMTL 489
             ++ VP T  H     D +Q E    LR     Q   + A   A  G+DI  + ++IN  +
Sbjct:   560 QEKVPSTSIHG----DREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDI 615

Query:   490 PDDKANYVHRIGRVGRAERMGLAIS 514
             PDD   YVHRIGR GR    G AIS
Sbjct:   616 PDDIDEYVHRIGRTGRCGNTGRAIS 640


>UNIPROTKB|Q4K4K3 [details] [associations]
            symbol:dbpA "ATP-independent RNA helicase DbpA"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
            ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
            KEGG:pfl:PFL_5772 PATRIC:19881049
            BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
        Length = 461

 Score = 186 (70.5 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
 Identities = 52/166 (31%), Positives = 89/166 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA+Q   ++ +  +   +  I+ L + GGV+   Q++ L  G  I+VGTP
Sbjct:    76 QALVICPTRELADQVAKEVRRLAR--AEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTP 133

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR++  +  G L L      VLDEAD +L  G+ + I+ + ++ P       R Q ++ S
Sbjct:   134 GRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPS------RRQTLLFS 187

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPET-VHHVVVKIDPQQ 450
             AT +   +K++A + M  P  V  K E    +T +     +I P++
Sbjct:   188 AT-YPVGIKQLASKFMRDPQTV--KAEAFHDDTQIEQRFYEISPEE 230

 Score = 116 (45.9 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  L  +IN+ L  D   ++HR+GR GRA   G+A+SLV+
Sbjct:   300 ATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVA 349

 Score = 101 (40.6 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
 Identities = 20/59 (33%), Positives = 38/59 (64%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             AF  + + P +   ++ + +   T +QA+++P+IL G D++  A+TGSGKT AF + ++
Sbjct:     7 AFNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLL 65


>UNIPROTKB|Q5ZKB9 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
            eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
            OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
            EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
            ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
            HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
            ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
        Length = 483

 Score = 177 (67.4 bits), Expect = 5.9e-25, Sum P(4) = 5.9e-25
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 5.9e-25, Sum P(4) = 5.9e-25
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 5.9e-25, Sum P(4) = 5.9e-25
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 41 (19.5 bits), Expect = 5.9e-25, Sum P(4) = 5.9e-25
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE--IPADEFDGKVVYGQKR 609
             G  +N   I +D++  L  IEE L   I+ +   ++  +   E+  + V  +K+
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKQ 483

 Score = 37 (18.1 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>UNIPROTKB|Q8JFP1 [details] [associations]
            symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003743 "translation initiation factor
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
            KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
            EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
            ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
            Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
            KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
            ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
        Length = 407

 Score = 189 (71.6 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
 Identities = 49/166 (29%), Positives = 96/166 (57%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K++++   +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLSTN---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATM-PMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 86 (35.3 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q 
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94

Query:    64 VCETLKE 70
             +   LKE
Sbjct:    95 LEIDLKE 101

 Score = 44 (20.5 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 156 (60.0 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
 Identities = 49/165 (29%), Positives = 79/165 (47%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             + +++ P+RELA Q       F+      +IRE  I GGVN+  Q+  L SGVD+VV  P
Sbjct:    72 RTLVLAPTRELACQIAES---FRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACP 128

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D I  G + +      ++DEAD +   G+   I  + K + +        Q ++ S
Sbjct:   129 GRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPH------QTLLFS 182

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+   +V+K+       P  + + G  A   +V H V  +   Q
Sbjct:   183 ATMPP-EVRKLTLETQTNPVTIQI-GTQAPASSVSHSVYPVKNHQ 225

 Score = 134 (52.2 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +FE     P +   V    +  PT +QA+AIP IL G DV+  A+TG+GKT A+ LP+IQ
Sbjct:     2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61

Query:    63 IVCET 67
              +  T
Sbjct:    62 KMLST 66

 Score = 120 (47.3 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  +IN  +PD   +Y HRIGR GR +R G A+SLV+
Sbjct:   295 ATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVT 344


>TAIR|locus:2008296 [details] [associations]
            symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
            "embryo sac egg cell differentiation" evidence=RCA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
            EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
            RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
            SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
            GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
            InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
            ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
            Uniprot:Q9C8J1
        Length = 392

 Score = 185 (70.2 bits), Expect = 8.0e-25, Sum P(3) = 8.0e-25
 Identities = 51/173 (29%), Positives = 88/173 (50%)

Query:   278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
             V + +   Q +++ PSRELA QT   I   +       I+    IGG ++ + +  L  G
Sbjct:    84 VNISSRKVQVLVLSPSRELASQTEKTI---QAIGAHTNIQAHACIGGKSIGEDIKKLERG 140

Query:   338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397
             V  V GTPGR+ D+I  G L     +  VLDE+D +L +G  + I  +++ +P    D  
Sbjct:   141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPH---D-- 195

Query:   398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              +Q+ + SATL   ++ +M E+ M  P  + +K ++   E +    V +D ++
Sbjct:   196 -IQVCLISATLPQ-EILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEE 246

 Score = 108 (43.1 bits), Expect = 8.0e-25, Sum P(3) = 8.0e-25
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query:   445 KIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504
             K   ++D+   + RS  ++  + A D    GID+  +  +IN  +P++   Y+HRIGR G
Sbjct:   295 KRQKERDDIMNQFRS-FKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAG 353

Query:   505 RAERMGLAISLVST 518
             R  R G+AI+ V +
Sbjct:   354 RFGREGVAINFVKS 367

 Score = 104 (41.7 bits), Expect = 8.0e-25, Sum P(3) = 8.0e-25
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F++MG+  ++ + V +  +  P+++Q  A+  IL G DV+  A++G+GKT    + + Q
Sbjct:    23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82

Query:    63 IV 64
             IV
Sbjct:    83 IV 84


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 182 (69.1 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
 Identities = 42/117 (35%), Positives = 65/117 (55%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             ++A P+    + P  +I+ P+RELA Q   +I KF K     +IR   + GGV    Q+ 
Sbjct:   202 INAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIR 258

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQI 389
              LS GV++ + TPGR+ D++  G  +L    + VLDEAD +L  G+   I ++  QI
Sbjct:   259 DLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI 315

 Score = 113 (44.8 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP-IIQ 62
             F+E G    +   V+   +  PT +Q++  P+ L G DV+  AETGSGKT ++CLP I+ 
Sbjct:   142 FDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVH 201

Query:    63 IVCETL 68
             I  + L
Sbjct:   202 INAQPL 207

 Score = 112 (44.5 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A D A  GID+  +  +IN   P++  +YVHRIGR GRA   G AI+  +T
Sbjct:   443 ATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTT 493


>UNIPROTKB|Q9KNA4 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
            PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
            DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
            Uniprot:Q9KNA4
        Length = 452

 Score = 183 (69.5 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
 Identities = 47/140 (33%), Positives = 71/140 (50%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA+Q + ++   +  +        LI GG N  DQ+  L+ G   +V T
Sbjct:    78 PRGLILVPTRELAKQVYGEL---RSMLGGLSYTATLITGGENFNDQVKALARGPRFIVAT 134

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D +    L L      VLDEAD +L  G+   + R+H       +  +R Q ++ 
Sbjct:   135 PGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHN-----AAKHRRRQTLMF 189

Query:   405 SATLHDFDVKKMAERLMYFP 424
             SATL   DV  MA  L+  P
Sbjct:   190 SATLDHADVNDMAMELLNEP 209

 Score = 112 (44.5 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
 Identities = 22/58 (37%), Positives = 40/58 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F+++G+   + K +   ++   T++Q +AIPL + G D+L +++TGSGKT AF LP++
Sbjct:     7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

 Score = 111 (44.1 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
 Identities = 42/139 (30%), Positives = 68/139 (48%)

Query:   381 LIDRM-HKQ--IPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE 437
             L D + HK+  + +I +D +  Q+I+ +AT  D D  ++ E+L       +LK   A+  
Sbjct:   230 LCDHLDHKEALLDRILADAEYRQVIIFTATRADTD--RLTEKL----NQNNLKAV-ALSG 282

Query:   438 TVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYV 497
              ++        Q++   G+    +    V   D A  G+DI  +  +IN  +P     YV
Sbjct:   283 NLNQT------QRNTIMGQFERAVFKILV-TTDVASRGLDIPAVTHVINFDMPKHTEEYV 335

Query:   498 HRIGRVGRAERMGLAISLV 516
             HR+GR GRA   G A+SLV
Sbjct:   336 HRVGRTGRAGNKGDAMSLV 354

 Score = 106 (42.4 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
 Identities = 25/55 (45%), Positives = 31/55 (56%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVW 524
             D A  G+DI  +  +IN  +P     YVHR+GR GRA   G A+SLV   P K W
Sbjct:   308 DVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVG--P-KDW 359


>TIGR_CMR|VC_A0061 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
            ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
            ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
            KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
        Length = 452

 Score = 183 (69.5 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
 Identities = 47/140 (33%), Positives = 71/140 (50%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA+Q + ++   +  +        LI GG N  DQ+  L+ G   +V T
Sbjct:    78 PRGLILVPTRELAKQVYGEL---RSMLGGLSYTATLITGGENFNDQVKALARGPRFIVAT 134

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D +    L L      VLDEAD +L  G+   + R+H       +  +R Q ++ 
Sbjct:   135 PGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHN-----AAKHRRRQTLMF 189

Query:   405 SATLHDFDVKKMAERLMYFP 424
             SATL   DV  MA  L+  P
Sbjct:   190 SATLDHADVNDMAMELLNEP 209

 Score = 112 (44.5 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
 Identities = 22/58 (37%), Positives = 40/58 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             F+++G+   + K +   ++   T++Q +AIPL + G D+L +++TGSGKT AF LP++
Sbjct:     7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64

 Score = 111 (44.1 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
 Identities = 42/139 (30%), Positives = 68/139 (48%)

Query:   381 LIDRM-HKQ--IPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE 437
             L D + HK+  + +I +D +  Q+I+ +AT  D D  ++ E+L       +LK   A+  
Sbjct:   230 LCDHLDHKEALLDRILADAEYRQVIIFTATRADTD--RLTEKL----NQNNLKAV-ALSG 282

Query:   438 TVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYV 497
              ++        Q++   G+    +    V   D A  G+DI  +  +IN  +P     YV
Sbjct:   283 NLNQT------QRNTIMGQFERAVFKILV-TTDVASRGLDIPAVTHVINFDMPKHTEEYV 335

Query:   498 HRIGRVGRAERMGLAISLV 516
             HR+GR GRA   G A+SLV
Sbjct:   336 HRVGRTGRAGNKGDAMSLV 354

 Score = 106 (42.4 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
 Identities = 25/55 (45%), Positives = 31/55 (56%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVW 524
             D A  G+DI  +  +IN  +P     YVHR+GR GRA   G A+SLV   P K W
Sbjct:   308 DVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVG--P-KDW 359


>TAIR|locus:2050715 [details] [associations]
            symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
            GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
            EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
            RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
            SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
            EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
            GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
            Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
        Length = 528

 Score = 178 (67.7 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
 Identities = 52/149 (34%), Positives = 82/149 (55%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDI 340
             NN  QA+I+ P+RELA QT +Q+ K   K++   KI  ++  GG +++D +  L   V +
Sbjct:   220 NNVIQAVILVPTRELALQT-SQVCKELSKYL---KIEVMVTTGGTSLRDDIMRLYQPVHL 275

Query:   341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
             +VGTPGR+ DL   G   L  C   V+DEAD LL   +   I+ + + +P+      R Q
Sbjct:   276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPE-----SR-Q 329

Query:   401 MIVCSATLHDFDVKKMAERLMYFPTWVDL 429
             +++ SAT     VK   +R +  P  ++L
Sbjct:   330 ILMFSATF-PVTVKSFKDRYLKKPYIINL 357

 Score = 124 (48.7 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  ++ + + E  +  P+ +Q E+IP+ L G D+L  A+ G+GKTGAFC+P ++
Sbjct:   156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 214

 Score = 103 (41.3 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P    +Y+HR+GR GR   +GLA++LV+
Sbjct:   454 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT 496


>FB|FBgn0052344 [details] [associations]
            symbol:CG32344 species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
            GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
            GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
            RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
            STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
            KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
            InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
            NextBio:847633 Uniprot:Q8SY39
        Length = 827

 Score = 170 (64.9 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
 Identities = 46/154 (29%), Positives = 81/154 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA QT+  I +  +F+   +++ +L++GG ++  Q S + +  D++V TP
Sbjct:   111 RALILSPTRELAVQTYKFIKELGRFM---ELKSILVLGGDSMDSQFSAIHTCPDVIVATP 167

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR   L     L L    + V DEAD L + G+G  ++    ++P       R Q ++ S
Sbjct:   168 GRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPS-----SR-QTVMFS 221

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV 439
             ATL    V+  A   +  P  + L  E  +P+ +
Sbjct:   222 ATLPKLLVE-FARAGLNDPVLIRLDVESKLPDAL 254

 Score = 129 (50.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+ MG+  E+ K + +  + +PT +Q + IPLIL G DV+  A+TGSGKT  F +P+ +
Sbjct:    41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE 99

 Score = 115 (45.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             D A  GIDI  L F++N+  P     +VHR+GR  RA R G A S+VST
Sbjct:   339 DVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVST 387


>UNIPROTKB|A3KN07 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
            RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
            Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
            InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
        Length = 622

 Score = 187 (70.9 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   258 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 317

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   318 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 371

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   372 LLFSATMPK-KIQNFAKSALVKPVTINV 398

 Score = 112 (44.5 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

 Score = 108 (43.1 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++     PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   242 FCLEQEKRL 250


>UNIPROTKB|E2R052 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
            RefSeq:XP_536417.2 ProteinModelPortal:E2R052
            Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
            NextBio:20854482 Uniprot:E2R052
        Length = 622

 Score = 187 (70.9 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   258 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 317

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   318 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 371

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   372 LLFSATMPK-KIQNFAKSALVKPVTINV 398

 Score = 112 (44.5 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

 Score = 108 (43.1 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++     PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   242 FCLEQEKRL 250


>UNIPROTKB|Q9UJV9 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
            "cellular response to interferon-beta" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0051607 "defense response to virus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
            GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
            EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
            EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
            UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
            SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
            PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
            PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
            KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
            HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
            PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
            OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
            EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
            ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
            Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
        Length = 622

 Score = 187 (70.9 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   258 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 317

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   318 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 371

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   372 LLFSATMPK-KIQNFAKSALVKPVTINV 398

 Score = 112 (44.5 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537

 Score = 108 (43.1 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++     PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   242 FCLEQEKRL 250


>WB|WBGene00006888 [details] [associations]
            symbol:vbh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0032502 "developmental process"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
            germ-line" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
            GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
            ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
            MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
            EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
            GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
            WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
            ArrayExpress:Q65XX1 Uniprot:Q65XX1
        Length = 660

 Score = 175 (66.7 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGG-VNVKDQMSVLSSGVDIVVG 343
             P A+++ P+RELA Q   +  KF        I+  ++ GG  N +DQ++ L +G  I++ 
Sbjct:   223 PCALVLSPTRELAIQIHKEATKFSY---KSNIQTAILYGGRENYRDQVNRLRAGTHILIA 279

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
             TPGR+ D+I  G + L  CR+ VLDEAD +L  G+
Sbjct:   280 TPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGF 314

 Score = 128 (50.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F E G  P + + V    +  PT VQ  +IP +L   D++  A+TGSGKT AF LPIIQ
Sbjct:   141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ 199

 Score = 106 (42.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DI  +  +IN  LP D   YVHRIGR GR   +G+A S
Sbjct:   458 AARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 500


>CGD|CAL0003204 [details] [associations]
            symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
            EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
            ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
            GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
            Uniprot:Q59LU0
        Length = 562

 Score = 182 (69.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 57/200 (28%), Positives = 98/200 (49%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             ++A P     + P  +++ P+RELA Q   +  KF K     +IR   + GG     Q+ 
Sbjct:   189 INAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGK---SSRIRNTCVYGGAPKGPQIR 245

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392
              L+ GV+I + TPGR+ D++  G  +L    + VLDEAD +L  G+     ++ K + +I
Sbjct:   246 DLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFE---PQIRKIVDQI 302

Query:   393 TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG-EDAVPETVHHVVVKIDPQQD 451
               D    Q ++ SAT    +V+++    +  P  V +   E A   T+  +V  ID    
Sbjct:   303 RPDR---QTLMWSATWPK-EVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSK 358

Query:   452 ETWGRLRSHIQTDGVHARDN 471
                 RL  H+++  ++ +DN
Sbjct:   359 RD--RLVKHLES-ALNEKDN 375

 Score = 115 (45.5 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 32/87 (36%), Positives = 45/87 (51%)

Query:   447 DPQQDET-W--GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRV 503
             D +Q+E  W     R   +T  + A D A  GID+ G+  +IN  +P +  +YVHRIGR 
Sbjct:   407 DKEQNERDWVLDEFRKG-KTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRT 465

Query:   504 GRAERMGLAISLVSTVPEKVWYHGEWC 530
             GR    G AIS  +    K+   G+ C
Sbjct:   466 GRGGASGTAISFFTEGNSKLG--GDLC 490

 Score = 108 (43.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +  F+E G    + + V++  +  PT +Q +  P+ L G D++  A TGSGKT ++CLP 
Sbjct:   126 ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 185

Query:    61 I 61
             I
Sbjct:   186 I 186


>UNIPROTKB|E1BDM8 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
            EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
            UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
            GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
        Length = 483

 Score = 177 (67.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNID 465

 Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>UNIPROTKB|E2RR01 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
            RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
            KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
        Length = 483

 Score = 177 (67.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNID 465

 Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>UNIPROTKB|P26196 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
            [GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
            "RNA-induced silencing complex" evidence=IDA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IDA]
            [GO:0000288 "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
            EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
            RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
            PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
            ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
            STRING:P26196 PhosphoSite:P26196 DMDM:116241327
            DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
            PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
            Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
            KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
            HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
            neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
            PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
            GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
            CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
            Uniprot:P26196
        Length = 483

 Score = 177 (67.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNID 465

 Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>UNIPROTKB|F1SAJ5 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
            RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
            Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
            Uniprot:F1SAJ5
        Length = 483

 Score = 177 (67.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNID 465

 Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>MGI|MGI:104976 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
            evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
            GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
            EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
            IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
            RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
            SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
            PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
            KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
            Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
            GermOnline:ENSMUSG00000032097 Uniprot:P54823
        Length = 483

 Score = 177 (67.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNID 465

 Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>RGD|1564560 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
            species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
            complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
            body assembly" evidence=IEA;ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
            IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
            Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
            UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
        Length = 483

 Score = 177 (67.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNID 465

 Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>UNIPROTKB|A4RGU2 [details] [associations]
            symbol:DBP4 "ATP-dependent RNA helicase DBP4"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
            RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
            EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
            Uniprot:A4RGU2
        Length = 798

 Score = 180 (68.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 51/182 (28%), Positives = 97/182 (53%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA QTF Q+++  K          L+IGG +V+++   LS  ++I++GTPG
Sbjct:   124 ALVLSPTRELAVQTF-QVLR--KIGRHHLFSAGLVIGGKSVREEAEALSR-MNILIGTPG 179

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             R+   +   H   + + +  VLDEAD ++  G+   +D + + +P         Q ++ S
Sbjct:   180 RILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTR------QTLLFS 233

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGE--DAVPETV--HHVVVKIDPQQDETWGRLRSHI 461
             AT     V  +A   +  P +V +  E   A P T+  H++V  +  + D  WG +++++
Sbjct:   234 AT-QSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLWGFIKANL 292

Query:   462 QT 463
             ++
Sbjct:   293 KS 294

 Score = 129 (50.5 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             AF E+ +     K V +  +   TD+QA AIPL L G D+L AA+TGSGKT AF +P+++
Sbjct:    50 AFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE 109

 Score = 103 (41.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAI 513
             A D    GID +G+ +++ +  P+D  +Y+HR+GR  R ER G A+
Sbjct:   351 ATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAV 396


>UNIPROTKB|J3KNN5 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
            Ensembl:ENST00000330503 Uniprot:J3KNN5
        Length = 640

 Score = 187 (70.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   276 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 335

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   336 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 389

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   390 LLFSATMPK-KIQNFAKSALVKPVTINV 416

 Score = 112 (44.5 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   502 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 555

 Score = 108 (43.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++     PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   200 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 259

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   260 FCLEQEKRL 268


>MGI|MGI:1915247 [details] [associations]
            symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
            GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
            EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
            RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
            ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
            PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
            UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
            ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
            Genevestigator:Q9DBN9 Uniprot:Q9DBN9
        Length = 619

 Score = 189 (71.6 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 48/169 (28%), Positives = 96/169 (56%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             +  P A+I+ P+RELA Q   Q  +    +  P+++ +L++GG+ +  Q+  L   V ++
Sbjct:   269 DKTPSALILTPTRELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRLRQHVKVI 326

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             + TPGR+ D+I    +SL+  +  V+DEAD +LK G+   +  + +  P    D    Q 
Sbjct:   327 IATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTP---GD---CQT 380

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP-ETVHHVVVKI-DP 448
             I+ SAT+ D  ++++ ++L++ P  + + G+  +P  +V  +++ + DP
Sbjct:   381 ILVSATIPD-SIEQLTDQLLHNPVRI-ITGDKNLPCASVRQIILWVEDP 427

 Score = 120 (47.3 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FE  G    + + +++  + +PT +Q + IP+ L G D+L +A+TGSGKT AF LP+I
Sbjct:   205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262

 Score = 97 (39.2 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             G+D+  +  ++N  +P     YVH++GRVGR  + G AI+ ++   +++++
Sbjct:   508 GLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558


>UNIPROTKB|A4QSS5 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase DBP2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
            ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
            KEGG:mgr:MGG_16901 Uniprot:A4QSS5
        Length = 548

 Score = 181 (68.8 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
 Identities = 50/145 (34%), Positives = 78/145 (53%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             ++A P+    + P  +I+ P+RELA Q   +I KF K     +IR   + GGV    Q+ 
Sbjct:   187 INAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGK---SSRIRNTCVYGGVPKGPQIR 243

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392
              LS GV++ + TPGR+ D++  G  +L    + VLDEAD +L  G+     ++ K I +I
Sbjct:   244 DLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFE---PQIRKIIGQI 300

Query:   393 TSDGKRLQMIVCSATLHDFDVKKMA 417
               D    Q ++ SAT    +V+ MA
Sbjct:   301 RPDR---QTLMWSATWPK-EVRNMA 321

 Score = 112 (44.5 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP-IIQ 62
             F+E G    +   V+   +  PT +Q++  P+ L G DV+  AETGSGKT  +CLP I+ 
Sbjct:   127 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186

Query:    63 IVCETL 68
             I  + L
Sbjct:   187 INAQPL 192

 Score = 111 (44.1 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  GID+  +  ++N   P++  +Y+HRIGR GRA   G AI+  +T   K
Sbjct:   430 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSK 484


>UNIPROTKB|J9NZF6 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
            Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
        Length = 649

 Score = 187 (70.9 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
 Identities = 49/148 (33%), Positives = 81/148 (54%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITD---PKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             P  +II PSRELA QT   +  + + + +   P +R  L IGG++VK+QM  +  GV ++
Sbjct:   285 PYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMM 344

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ DL+    +SL  CR+  LDEAD ++  G+   I  +          G+R Q 
Sbjct:   345 VATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK-----GQR-QT 398

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429
             ++ SAT+    ++  A+  +  P  +++
Sbjct:   399 LLFSATMPK-KIQNFAKSALVKPVTINV 425

 Score = 112 (44.5 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D + A D A  G+D   +  +IN  +P++  NYVHRIGR GR+   G+A + ++
Sbjct:   511 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 564

 Score = 108 (43.1 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+EM     I + +++     PT +Q + IP IL G D++  A TGSGKT  F LP+I 
Sbjct:   209 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 268

Query:    63 IVCETLKEI 71
                E  K +
Sbjct:   269 FCLEQEKRL 277


>UNIPROTKB|Q8EDC4 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 180 (68.4 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA Q ++Q+   +  + + + + + ++GG N  DQ   L+     +V T
Sbjct:    74 PRVLILLPTRELAHQVYSQL---RLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVAT 130

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D +   +L L      +LDEAD +L  G+   +  +++      +D KR Q ++ 
Sbjct:   131 PGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINE-----AADHKRRQTLMF 185

Query:   405 SATLHDFDVKKMAERLMYFPTWV 427
             SATL   ++ ++A  L+  P  V
Sbjct:   186 SATLDHSEINEIAAALLKNPLHV 208

 Score = 114 (45.2 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F +  +   + ++++ M    PT +Q +A+P+ L G D++ +++TGSGKT AF LP +Q 
Sbjct:     3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query:    64 VCET 67
             V  T
Sbjct:    63 VIST 66

 Score = 110 (43.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 43/141 (30%), Positives = 68/141 (48%)

Query:   381 LIDRM-HKQ--IPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY--FPTWVDLKGEDAV 435
             L D + HK+  + ++ SD    Q+I+ +AT  D   +++A +L    F T   L GE  +
Sbjct:   226 LCDHLDHKEALLSRLLSDESHKQVIIFTATRAD--TERLAAKLSAQGFAT-AALSGE--L 280

Query:   436 PETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKAN 495
              +   + ++       + + R +  I        D A  G+D+  +  +IN  +P     
Sbjct:   281 KQAARNQIM-------DQFARGQQQILV----TTDVASRGLDLLNVSLVINFDMPKFAEE 329

Query:   496 YVHRIGRVGRAERMGLAISLV 516
             YVHRIGR GRA   G AISLV
Sbjct:   330 YVHRIGRTGRAGAKGDAISLV 350

 Score = 105 (42.0 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 26/55 (47%), Positives = 31/55 (56%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVW 524
             D A  G+D+  +  +IN  +P     YVHRIGR GRA   G AISLV   P K W
Sbjct:   304 DVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG--P-KDW 355


>TIGR_CMR|SO_2838 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 180 (68.4 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+ +I+ P+RELA Q ++Q+   +  + + + + + ++GG N  DQ   L+     +V T
Sbjct:    74 PRVLILLPTRELAHQVYSQL---RLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVAT 130

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D +   +L L      +LDEAD +L  G+   +  +++      +D KR Q ++ 
Sbjct:   131 PGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINE-----AADHKRRQTLMF 185

Query:   405 SATLHDFDVKKMAERLMYFPTWV 427
             SATL   ++ ++A  L+  P  V
Sbjct:   186 SATLDHSEINEIAAALLKNPLHV 208

 Score = 114 (45.2 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F +  +   + ++++ M    PT +Q +A+P+ L G D++ +++TGSGKT AF LP +Q 
Sbjct:     3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query:    64 VCET 67
             V  T
Sbjct:    63 VIST 66

 Score = 110 (43.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 43/141 (30%), Positives = 68/141 (48%)

Query:   381 LIDRM-HKQ--IPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY--FPTWVDLKGEDAV 435
             L D + HK+  + ++ SD    Q+I+ +AT  D   +++A +L    F T   L GE  +
Sbjct:   226 LCDHLDHKEALLSRLLSDESHKQVIIFTATRAD--TERLAAKLSAQGFAT-AALSGE--L 280

Query:   436 PETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKAN 495
              +   + ++       + + R +  I        D A  G+D+  +  +IN  +P     
Sbjct:   281 KQAARNQIM-------DQFARGQQQILV----TTDVASRGLDLLNVSLVINFDMPKFAEE 329

Query:   496 YVHRIGRVGRAERMGLAISLV 516
             YVHRIGR GRA   G AISLV
Sbjct:   330 YVHRIGRTGRAGAKGDAISLV 350

 Score = 105 (42.0 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 26/55 (47%), Positives = 31/55 (56%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVW 524
             D A  G+D+  +  +IN  +P     YVHRIGR GRA   G AISLV   P K W
Sbjct:   304 DVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG--P-KDW 355


>UNIPROTKB|Q4K8U0 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
            GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
            ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
            Uniprot:Q4K8U0
        Length = 557

 Score = 171 (65.3 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 49/165 (29%), Positives = 83/165 (50%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             PQA+I+ P+RELA Q       + K +  P +  + + GG  +  Q+  + +G  IVV T
Sbjct:    75 PQALILAPTRELALQVATAFETYAKQM--PGVTVVAVYGGAPMGPQLKAIRNGAQIVVAT 132

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D +      L      VLDEAD +LK G+ + ++ + K +P+        Q ++ 
Sbjct:   133 PGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR------QTVLF 186

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--HVVVKID 447
             SATL    ++ +AER +  P  V ++ +      +   H++V  D
Sbjct:   187 SATLPQ-SIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHAD 230

 Score = 118 (46.6 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +  F  + + P I  AV    +  P+ +Q ++IP+IL G D++  A+TG+GKT AF LPI
Sbjct:     5 IGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPI 64

Query:    61 IQIVCETLKE 70
             +  +  + +E
Sbjct:    65 LHRIDPSKRE 74

 Score = 116 (45.9 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query:   464 DGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             D V A D A  G+D+  +  + N+ +P D  +YVHRIGR GRA R G A+ LV+
Sbjct:   297 DIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVT 350


>WB|WBGene00022148 [details] [associations]
            symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
            ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
            EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
            UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
            OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
        Length = 739

 Score = 163 (62.4 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
 Identities = 45/140 (32%), Positives = 84/140 (60%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             + +++ P+RELA Q F Q+  F+K  T  ++   L  GG+++K Q + L SG D+VV TP
Sbjct:   221 RVLVLVPTRELAIQVF-QV--FRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATP 277

Query:   346 GRMED-LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             GR+ D L +    +L++    VLDEAD +L++ +    D+M++ I ++ +  +  Q ++ 
Sbjct:   278 GRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFR---DQMNELI-RLCAQNR--QTLLF 331

Query:   405 SATLHDFDVKKMAERLMYFP 424
             SAT+ + ++ ++A   +  P
Sbjct:   332 SATMTE-EIDELASMSLQKP 350

 Score = 118 (46.6 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +FE+M +  +I KA     +  PT +Q   IP+ L G D+   A TG+GKT AF LPI++
Sbjct:   149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208

 Score = 118 (46.6 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query:   449 QQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508
             Q+ E+  + +   + D + + D A  G+DI G+  +INM +P     Y+HR+GR  RA +
Sbjct:   431 QRIESLSKFKK-AEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 489

Query:   509 MGLAISLVSTVPEKV 523
              G +ISLV     K+
Sbjct:   490 AGRSISLVGEDERKL 504

 Score = 53 (23.7 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query:   571 KRMLGEIEEHLNVTIQQVD--DKLEIPADEFDGKVVYGQKRV----NMGSSYENHVTQME 624
             +R + E+EE    TIQQ+D  D+ E      +  +   Q  +    N G+  E  V  M+
Sbjct:   531 RRRIDELEE----TIQQIDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMK 586

Query:   625 PS-VNKLSKLESKAQL 639
              S + K  K E K Q+
Sbjct:   587 ESQIEKQRKREEKRQM 602

 Score = 42 (19.8 bits), Expect = 8.0e-17, Sum P(4) = 8.0e-17
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query:   270 SADVSAGPVKLVNNAPQAIIIEPSRELAE 298
             S D     ++ + N  +A+I+E   E AE
Sbjct:    63 SLDEKIAEMRKLKNTGKAVIVEDEAEAAE 91


>UNIPROTKB|P54824 [details] [associations]
            symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
            "Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
            GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
            RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
            GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
        Length = 481

 Score = 176 (67.0 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 52/177 (29%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   165 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 222

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEAD LL Q +  +++ +   +PK        Q+++ S
Sbjct:   223 GRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPK------NRQILLYS 276

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   277 ATF-PLSVQKFMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 332

 Score = 125 (49.1 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 155

 Score = 100 (40.3 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   396 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 438

 Score = 40 (19.1 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   431 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSSID 464

 Score = 37 (18.1 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   334 NQSIIFCNSSQRVELLAKKISQLGYSCFY 362


>TAIR|locus:2098886 [details] [associations]
            symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
            EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
            PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
            UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
            PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
            EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
            GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
            PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
            GermOnline:AT3G61240 Uniprot:Q9M2E0
        Length = 498

 Score = 168 (64.2 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
 Identities = 49/149 (32%), Positives = 80/149 (53%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDI 340
             NN  QA+I+ P+RELA QT +Q+ K   K++    I+ ++  GG +++D +  L   V +
Sbjct:   190 NNVIQAMILVPTRELALQT-SQVCKELSKYLN---IQVMVTTGGTSLRDDIMRLHQPVHL 245

Query:   341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
             +VGTPGR+ DL   G   L  C   V+DEAD LL   +   ++ + + +P+        Q
Sbjct:   246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQ------NRQ 299

Query:   401 MIVCSATLHDFDVKKMAERLMYFPTWVDL 429
              ++ SAT     VK   +R +  P  ++L
Sbjct:   300 FLMFSATF-PVTVKAFKDRHLRKPYVINL 327

 Score = 131 (51.2 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
 Identities = 23/59 (38%), Positives = 40/59 (67%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  ++ K + E  +  P+ +Q E+IP+ L G D+L  A+ G+GKTGAFC+P+++
Sbjct:   126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184

 Score = 103 (41.3 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P    +Y+HR+GR GR   +GLA++LV+
Sbjct:   424 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT 466


>TIGR_CMR|CPS_1726 [details] [associations]
            symbol:CPS_1726 "RNA helicase DeaD" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
            STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
            OMA:WIVKGVE ProtClustDB:CLSK741103
            BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
        Length = 611

 Score = 170 (64.9 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
 Identities = 51/141 (36%), Positives = 70/141 (49%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPK-IRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             PQ +++ P+RELA Q    I  F K   D K +R   + GG +   Q   L  G  +VVG
Sbjct:    84 PQLMVLAPTRELAMQVAEAIESFGK---DMKGLRVATLYGGQSYGPQFQQLERGAQVVVG 140

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D +    L L   R  VLDEAD +L  G+   I  +   IPK        QM +
Sbjct:   141 TPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTA------QMCL 194

Query:   404 CSATLHDFDVKKMAERLMYFP 424
              SAT+    ++K+A R +  P
Sbjct:   195 FSATMPPA-IRKIANRFLKDP 214

 Score = 120 (47.3 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query:     3 AFEEMGVLPE-IGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             AF  +G LPE +  AV  + +   TD+QA  IP +L G DVL  A+TG+GKT AF LP +
Sbjct:    16 AFASLG-LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPAL 74

Query:    62 QIVCETLKE 70
               +  ++K+
Sbjct:    75 AKIDTSIKK 83

 Score = 116 (45.9 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D    G+DI  +  +IN  LP D   YVHRIGR GRA R G++I+ V
Sbjct:   310 ATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFV 358


>CGD|CAL0000056 [details] [associations]
            symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
            ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
            KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
        Length = 539

 Score = 151 (58.2 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
 Identities = 27/59 (45%), Positives = 44/59 (74%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+E+ ++P++ +++E M +  PT +Q+EAIP  L G D++  A+TGSGKT AF +PI+Q
Sbjct:   125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183

 Score = 140 (54.3 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
 Identities = 36/105 (34%), Positives = 57/105 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+REL   TF     F    +   +R   I+GG+++ DQ   L     ++V TPG
Sbjct:   194 ALVLAPTREL---TFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPG 250

Query:   347 R-MEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             R M+ L      SL + ++ V+DEAD LL   +G  +D++ K IP
Sbjct:   251 RIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP 295

 Score = 114 (45.2 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  +IN  +P D   Y+HR+GR  RA R G +ISL++
Sbjct:   418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLIT 467


>UNIPROTKB|E1C8R1 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
            EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
            PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
            KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
        Length = 483

 Score = 172 (65.6 bits), Expect = 2.2e-24, Sum P(4) = 2.2e-24
 Identities = 51/177 (28%), Positives = 85/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TP
Sbjct:   166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   + H +  VLDEA+ LL Q +  +++ +   +PK        Q+++ S
Sbjct:   224 GRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPK------NRQILLYS 277

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 333

 Score = 125 (49.1 bits), Expect = 2.2e-24, Sum P(4) = 2.2e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156

 Score = 100 (40.3 bits), Expect = 2.2e-24, Sum P(4) = 2.2e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   397 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 439

 Score = 41 (19.5 bits), Expect = 2.2e-24, Sum P(4) = 2.2e-24
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE--IPADEFDGKVVYGQKR 609
             G  +N   I +D++  L  IEE L   I+ +   ++  +   E+  + V  +K+
Sbjct:   432 GLAIN--LITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKQ 483

 Score = 37 (18.1 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   335 NQSIIFCNSSQRVELLAKKISQLGYSCFY 363


>TAIR|locus:2030285 [details] [associations]
            symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
            "plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
            membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
            to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
            stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
            GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
            EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
            RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
            SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
            EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
            GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
            PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
            Uniprot:Q9CAI7
        Length = 414

 Score = 191 (72.3 bits), Expect = 2.3e-24, Sum P(4) = 2.3e-24
 Identities = 51/166 (30%), Positives = 91/166 (54%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPK-IRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             QA+++ P+RELA+Q    I K  + + D   ++    +GG +V++   VL SGV +VVGT
Sbjct:   111 QALVLAPTRELAQQ----IEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGT 166

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL+    L     + FVLDEAD +L +G+ + I  + + +P       ++Q+ V 
Sbjct:   167 PGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPS------KVQVGVF 220

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   +  ++  + M  P  + +K ++   E +    V +D ++
Sbjct:   221 SATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEE 265

 Score = 112 (44.5 bits), Expect = 2.3e-24, Sum P(4) = 2.3e-24
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP    NY+HRIGR GR  R G+AI+ +++  E++
Sbjct:   343 GIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERM 391

 Score = 85 (35.0 bits), Expect = 2.3e-24, Sum P(4) = 2.3e-24
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+ M + P++ + +    +  P+ +Q   I     G DV+  A++G+GKT  FC  ++Q
Sbjct:    42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101

 Score = 41 (19.5 bits), Expect = 2.3e-24, Sum P(4) = 2.3e-24
 Identities = 5/20 (25%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             +++RM+ +I+   NV ++++
Sbjct:   387 EDERMMADIQRFYNVVVEEL 406


>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
            symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
            RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
            Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
            NextBio:20787456 Uniprot:E7F1G8
        Length = 483

 Score = 169 (64.5 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
 Identities = 53/177 (29%), Positives = 86/177 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QAI++ P+RELA Q     I   K +   K+  +   GG N++D +  L   V +++ TP
Sbjct:   158 QAIVLVPTRELALQVSQISINMSKHLGGIKV--MATTGGTNLRDDIMRLDEIVHVIIATP 215

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DLI  G   +   +  V+DEAD LL Q +  LI+ +   +PK     KR Q+++ S
Sbjct:   216 GRILDLIKKGVAKVDKVQMAVMDEADKLLSQDFVVLIEDIISFLPK-----KR-QILLYS 269

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             AT     V+K   + +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   270 ATF-PISVQKFMTKHLQKPYEINLMDELTLKGITQYYAYVTERQKVHCLNTLFSRLQ 325

 Score = 125 (49.1 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    90 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 148

 Score = 106 (42.4 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             GIDI  +  +IN   P +   Y+HRIGR GR   +GLAI+L+++
Sbjct:   389 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITS 432


>TIGR_CMR|CPS_0174 [details] [associations]
            symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
            "mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
            RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
            GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
            BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
        Length = 428

 Score = 184 (69.8 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
 Identities = 58/183 (31%), Positives = 93/183 (50%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             +N P+A+I+ P+RELA Q      +  K      +R  ++ GG   + Q   L +GVDI+
Sbjct:    79 HNQPRALIMAPTRELAIQIHRDATEMAK---STGLRLGVVYGGEGYESQRLELEAGVDIL 135

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             +GT GR+ D +  G  +L +    VLDEAD +   G+   I  M  ++P  T   +RL M
Sbjct:   136 IGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPAT---ERLSM 192

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHI 461
             +  SATL  F VK++A   M  PT V+++ E      +   +    P  ++    L++ I
Sbjct:   193 LF-SATL-SFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFY--PSNEDKMTLLQTLI 248

Query:   462 QTD 464
             + D
Sbjct:   249 EED 251

 Score = 114 (45.2 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
 Identities = 30/65 (46%), Positives = 35/65 (53%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL-----VSTVPEK 522
             A D A  G+ I  +  + N  LPDD  +YVHRIGR GRA   G AISL     V  +PE 
Sbjct:   309 ATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEI 368

Query:   523 VWYHG 527
               Y G
Sbjct:   369 ETYIG 373

 Score = 97 (39.2 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56
             F ++ + P++   +E M +   T +QA+++P++L G D+   A+TG GKT AF
Sbjct:    11 FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAF 63

 Score = 55 (24.4 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
 Identities = 38/141 (26%), Positives = 61/141 (43%)

Query:   231 VLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIII 290
             +L +A +SF      F H      + V    K N + SE     +   K+     Q +I 
Sbjct:   192 MLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNEDKMT--LLQTLIE 249

Query:   291 E--PSRELAEQTFNQIIKFKKF--ITDPKIRELLIIGGVNVKDQMSVL---SSG-VDIVV 342
             E  P + +       + + K F  +   KIR  L+ G V  K ++ +L   + G VDI+V
Sbjct:   250 EDWPEKAIVFANTKHVCE-KVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILV 308

Query:   343 GTPGRMEDLISGG-HL-SLTH 361
              T     D+ + G H+ S+TH
Sbjct:   309 AT-----DVAARGLHIPSVTH 324


>DICTYBASE|DDB_G0269146 [details] [associations]
            symbol:ifdA "eukaryotic translation initiation factor
            4A" species:44689 "Dictyostelium discoideum" [GO:0045335
            "phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
            GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
            GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
            RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
            PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
            KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
        Length = 395

 Score = 207 (77.9 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
 Identities = 51/165 (30%), Positives = 90/165 (54%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+II P+RELA+Q    ++   +++    I+    IGG  + D +  L SGV +VVGTP
Sbjct:    94 QALIIAPTRELAQQIQKVVLALGEYL---HIKSYACIGGTKITDDIQALQSGVHVVVGTP 150

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ +++S G ++    R F LDEAD +L +G+ + I  + + +PK       +Q+ + S
Sbjct:   151 GRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPKT------IQVGLFS 204

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             AT+ D +   +  + M  P  + +K ++   E +    V +  +Q
Sbjct:   205 ATMTD-ETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQ 248

 Score = 109 (43.4 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP +  NY+HRIGR GR  R G+AI+ ++
Sbjct:   324 GIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFIT 366

 Score = 72 (30.4 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
 Identities = 18/68 (26%), Positives = 37/68 (54%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII- 61
             +F+ M +  ++ + +    +  P+ +Q  AI  +  G D++  A++G+GKT  F + I+ 
Sbjct:    25 SFDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILS 84

Query:    62 QIVCETLK 69
             +I    LK
Sbjct:    85 RIDISVLK 92


>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
            symbol:PFD1070w "eukaryotic initiation factor,
            putative" species:5833 "Plasmodium falciparum" [GO:0016281
            "eukaryotic translation initiation factor 4F complex" evidence=ISS]
            [GO:0003743 "translation initiation factor activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
            GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
            OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
            SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
            KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
            ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
        Length = 390

 Score = 196 (74.1 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 52/180 (28%), Positives = 94/180 (52%)

Query:   274 SAGPVKLVN---NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330
             + G +  VN   N  Q II+ P+RELAEQT    +    +I    +     IGG  + D 
Sbjct:    72 AVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYI---HVTIYCCIGGKKMSDD 128

Query:   331 MSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             +  L++GV ++ GTPGR+  +++  HL   + +  V+DEAD +L +G+   +  +++ + 
Sbjct:   129 IKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLS 188

Query:   391 KITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
               T      Q+I+ SATL   +V ++  + M+ P  + +K ++   E +    V I+ +Q
Sbjct:   189 PNT------QIILSSATLPQ-EVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQ 241

 Score = 107 (42.7 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             G+D+  +  ++N  LP+ + +Y+HRIGR GR  R G+AI+ V     K+
Sbjct:   319 GLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKI 367

 Score = 86 (35.3 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +FE +G+   + + +    +  P+ +Q   I  IL G DV++ +++G+GKT  F +  + 
Sbjct:    18 SFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77

Query:    63 IVCETLKE 70
              V   L E
Sbjct:    78 CVNRNLNE 85


>UNIPROTKB|Q8IFN9 [details] [associations]
            symbol:PFD1070w "Eukaryotic initiation factor, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
            "regulation of translational initiation" evidence=ISS] [GO:0016281
            "eukaryotic translation initiation factor 4F complex" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
            GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
            OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
            SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
            KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
            ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
        Length = 390

 Score = 196 (74.1 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 52/180 (28%), Positives = 94/180 (52%)

Query:   274 SAGPVKLVN---NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330
             + G +  VN   N  Q II+ P+RELAEQT    +    +I    +     IGG  + D 
Sbjct:    72 AVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYI---HVTIYCCIGGKKMSDD 128

Query:   331 MSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390
             +  L++GV ++ GTPGR+  +++  HL   + +  V+DEAD +L +G+   +  +++ + 
Sbjct:   129 IKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLS 188

Query:   391 KITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
               T      Q+I+ SATL   +V ++  + M+ P  + +K ++   E +    V I+ +Q
Sbjct:   189 PNT------QIILSSATLPQ-EVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQ 241

 Score = 107 (42.7 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             G+D+  +  ++N  LP+ + +Y+HRIGR GR  R G+AI+ V     K+
Sbjct:   319 GLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKI 367

 Score = 86 (35.3 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +FE +G+   + + +    +  P+ +Q   I  IL G DV++ +++G+GKT  F +  + 
Sbjct:    18 SFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77

Query:    63 IVCETLKE 70
              V   L E
Sbjct:    78 CVNRNLNE 85


>TAIR|locus:2065215 [details] [associations]
            symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
            HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
            IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
            ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
            PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
            KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
            OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
            Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
        Length = 760

 Score = 168 (64.2 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
 Identities = 51/171 (29%), Positives = 86/171 (50%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             +  P  +I  P+RELA Q F   ++ KKF     +R   + GG++  +Q   L +G +IV
Sbjct:   299 DEGPIGVICAPTRELAHQIF---LEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIV 355

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             V TPGR+ D++    L++    + VLDEAD +   G+     ++   + +I  D    Q 
Sbjct:   356 VATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFE---PQVRSIVGQIRPDR---QT 409

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDE 452
             ++ SAT+  + V+K+A  ++  P  V + GE  +       VV + P   E
Sbjct:   410 LLFSATM-PWKVEKLAREILSDPIRVTV-GEVGMANEDITQVVNVIPSDAE 458

 Score = 136 (52.9 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FE+ G   +I  A+++  +  PT +Q +A+P++L G DV+  A+TGSGKT AF LP+I
Sbjct:   230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287

 Score = 104 (41.7 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query:   465 GVH----ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA-ERMGLAISLVS 517
             GVH    A D A  G+DI  L  ++N  +  D   +VHRIGR GRA +R G+A +LV+
Sbjct:   522 GVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVT 579


>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
            symbol:PF14_0655 "RNA helicase-1, putative"
            species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003743 "translation initiation factor activity"
            evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
            RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
            IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
            GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
            ProtClustDB:PTZ00424 Uniprot:Q8IKF0
        Length = 398

 Score = 204 (76.9 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
 Identities = 50/167 (29%), Positives = 92/167 (55%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA+I+ P+RELA+Q    ++    ++   K++    +GG  V++ +  L  GV +VVG
Sbjct:    91 ACQALILAPTRELAQQIQKVVLALGDYL---KVKCHACVGGTVVREDIDKLKQGVHMVVG 147

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D+I   HL +   + F+LDEAD +L +G+   I  + K   K+  D   +Q+ +
Sbjct:   148 TPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFK---KLVPD---IQVAL 201

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              SAT+   ++ ++  R M  P  + +K ++   E +    V ++ ++
Sbjct:   202 FSATMPQ-EILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEE 247

 Score = 102 (41.0 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP     Y+HRIGR GR  R G+AI+ V+
Sbjct:   325 GIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVT 367

 Score = 82 (33.9 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+ +G+  ++ + +    +  P+ +Q   I  IL G D +  A++G+GKT  F +  +Q+
Sbjct:    25 FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQL 84

Query:    64 V 64
             +
Sbjct:    85 I 85


>UNIPROTKB|Q8IKF0 [details] [associations]
            symbol:H45 "Helicase 45" species:36329 "Plasmodium
            falciparum 3D7" [GO:0006446 "regulation of translational
            initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
            GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
            RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
            IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
            GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
            ProtClustDB:PTZ00424 Uniprot:Q8IKF0
        Length = 398

 Score = 204 (76.9 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
 Identities = 50/167 (29%), Positives = 92/167 (55%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A QA+I+ P+RELA+Q    ++    ++   K++    +GG  V++ +  L  GV +VVG
Sbjct:    91 ACQALILAPTRELAQQIQKVVLALGDYL---KVKCHACVGGTVVREDIDKLKQGVHMVVG 147

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D+I   HL +   + F+LDEAD +L +G+   I  + K   K+  D   +Q+ +
Sbjct:   148 TPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFK---KLVPD---IQVAL 201

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              SAT+   ++ ++  R M  P  + +K ++   E +    V ++ ++
Sbjct:   202 FSATMPQ-EILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEE 247

 Score = 102 (41.0 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID+  +  +IN  LP     Y+HRIGR GR  R G+AI+ V+
Sbjct:   325 GIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVT 367

 Score = 82 (33.9 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+ +G+  ++ + +    +  P+ +Q   I  IL G D +  A++G+GKT  F +  +Q+
Sbjct:    25 FDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQL 84

Query:    64 V 64
             +
Sbjct:    85 I 85


>UNIPROTKB|Q485I3 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 189 (71.6 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 54/167 (32%), Positives = 86/167 (51%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q+++I P+RELA+Q   ++ K  + I + KI  L + GG     Q+  L  G  ++VGTP
Sbjct:    80 QSMVICPTRELADQVAKELRKLARGIHNIKI--LTLCGGTPFGPQIGSLEHGAHVIVGTP 137

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+E+ +  G L L +    VLDEAD +L+ G+   +D +  + P       R Q ++ S
Sbjct:   138 GRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL-----DR-QTLLFS 191

Query:   406 ATLHDFDVKKMAERLMYFPTWVDL-KGEDAVPETVHHVVVKIDPQQD 451
             AT  D  +K ++E +M  P  V +   ED    T+     K+    D
Sbjct:   192 ATFPD-QIKSISESIMTDPVMVKIASSEDQ--STISQKFFKVGNDDD 235

 Score = 106 (42.4 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 24/50 (48%), Positives = 29/50 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  L  +IN  +  D   +VHRIGR GRA   G+A SL S
Sbjct:   305 ATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFS 354

 Score = 100 (40.3 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             AF  + +  ++ K +  + +   T +QA+ +P +L G DV+  A+TGSGKT AF L ++
Sbjct:    11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69


>TIGR_CMR|CPS_1540 [details] [associations]
            symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 189 (71.6 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 54/167 (32%), Positives = 86/167 (51%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             Q+++I P+RELA+Q   ++ K  + I + KI  L + GG     Q+  L  G  ++VGTP
Sbjct:    80 QSMVICPTRELADQVAKELRKLARGIHNIKI--LTLCGGTPFGPQIGSLEHGAHVIVGTP 137

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+E+ +  G L L +    VLDEAD +L+ G+   +D +  + P       R Q ++ S
Sbjct:   138 GRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL-----DR-QTLLFS 191

Query:   406 ATLHDFDVKKMAERLMYFPTWVDL-KGEDAVPETVHHVVVKIDPQQD 451
             AT  D  +K ++E +M  P  V +   ED    T+     K+    D
Sbjct:   192 ATFPD-QIKSISESIMTDPVMVKIASSEDQ--STISQKFFKVGNDDD 235

 Score = 106 (42.4 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 24/50 (48%), Positives = 29/50 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  L  +IN  +  D   +VHRIGR GRA   G+A SL S
Sbjct:   305 ATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFS 354

 Score = 100 (40.3 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             AF  + +  ++ K +  + +   T +QA+ +P +L G DV+  A+TGSGKT AF L ++
Sbjct:    11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69


>ZFIN|ZDB-GENE-050522-359 [details] [associations]
            symbol:zgc:112350 "zgc:112350" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
            EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
            UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
            KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
        Length = 512

 Score = 162 (62.1 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+E+GV   + +A +++ W  PT +Q EAIP+ L G DV+  AETGSGKTGAF +P++Q
Sbjct:    80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139

 Score = 136 (52.9 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
 Identities = 31/105 (29%), Positives = 59/105 (56%)

Query:   288 IIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGR 347
             +++ P+RELA Q   Q   F    +   ++  +I+GG+++  Q  VL+    +V+ TPGR
Sbjct:   151 LVLTPTRELAFQIAEQ---FDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGR 207

Query:   348 MEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             + D +      +L   ++ V+DEAD +L   + + +D++ K IP+
Sbjct:   208 LIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPR 252

 Score = 102 (41.0 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  +IN  +P    +Y+HR+GR  RA R G +I+ V+
Sbjct:   374 ATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 423


>UNIPROTKB|P21693 [details] [associations]
            symbol:dbpA species:83333 "Escherichia coli K-12"
            [GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
            activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
            [GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
            evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
            "ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
            GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
            ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
            EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
            GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
            PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
            HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
            BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
            BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
            GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
        Length = 457

 Score = 165 (63.1 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
 Identities = 46/151 (30%), Positives = 79/151 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+++ P+RELA+Q   ++ +  +F+ + KI  L + GG     Q   L     I+V TP
Sbjct:    73 QALVLCPTRELADQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATP 130

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D +  G +SL      V+DEAD +L  G+ + ID + +  P       R Q ++ S
Sbjct:   131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP-----ASR-QTLLFS 184

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVP 436
             AT  +  +  ++ R+   P  +++   DA+P
Sbjct:   185 ATWPEA-IAAISGRVQRDPLAIEIDSTDALP 214

 Score = 129 (50.5 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query:     1 MAAFEEMGVLPEIGKA-VEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
             M AF  + VLP      + E+ +L  T VQA A+P IL G DV + A+TGSGKT AF L 
Sbjct:     1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query:    60 IIQIVCETL 68
             ++Q +  +L
Sbjct:    61 LLQQIDASL 69

 Score = 103 (41.3 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
 Identities = 25/55 (45%), Positives = 31/55 (56%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  G+DI  L  ++N  L  D   +VHRIGR  RA   GLAIS  +  PE+
Sbjct:   297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA--PEE 349


>TAIR|locus:2010306 [details] [associations]
            symbol:EMB1586 "embryo defective 1586" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
            "plasmodesmata-mediated intercellular transport" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
            EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
            EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
            EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
            EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
            UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
            PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
            KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
            HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
            ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
            Uniprot:Q8W4E1
        Length = 551

 Score = 177 (67.4 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
 Identities = 60/190 (31%), Positives = 92/190 (48%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+I+ PSREL  Q   ++ K    +    +++L  +GG N   Q   L      IVVGT
Sbjct:   193 QAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQL--VGGANRMRQEEALKKNKPAIVVGT 250

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR------ 398
             PGR+ ++  GG L    CRF VLDE D LL   +   I R+ + + K +  G +      
Sbjct:   251 PGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDER 310

Query:   399 --LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP-ETVHHV--VVKIDPQQDET 453
                Q I+ SAT+  F V + A+   + P  V  +     P +TV     V+ + P   E 
Sbjct:   311 ANRQTILVSATV-PFSVIRAAKSWSHEPVLV--QANKVTPLDTVQPSAPVMSLTPTTSEA 367

Query:   454 WGRLRSHIQT 463
              G++++ IQ+
Sbjct:   368 DGQIQTTIQS 377

 Score = 127 (49.8 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             +FEE+G+   +  ++E   + +PTDVQ+ A+P I+ G D ++ + TGSGKT A+ LPI+
Sbjct:   111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169

 Score = 96 (38.9 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query:   471 NARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
             +AR G+D++    ++N+ LP D  +Y HR GR GR  R G  +++
Sbjct:   467 SAR-GLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTV 510


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 187 (70.9 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
 Identities = 49/169 (28%), Positives = 94/169 (55%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             +  P A+I+ P+RELA Q   Q  +    +  P+++ +L++GG+ +  Q+  L   V ++
Sbjct:   269 SKTPSALILTPTRELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRLQQHVKVI 326

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             + TPGR+ D+I    + L   +  V+DEAD +LK G+   +  + + IP   +D    Q 
Sbjct:   327 IATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIP---ND---CQT 380

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP-ETVHHVVVKI-DP 448
             I+ SAT+    ++++A +L++ P  + + GE  +P   V  +++ + DP
Sbjct:   381 ILVSATIPT-SIEQLASQLLHNPVRI-ITGEKNLPCANVRQIILWVEDP 427

 Score = 117 (46.2 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEI-GKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FE    LPE+    +++  + +PT +Q + IP+ L G D+L +A+TGSGKT AF LP+I
Sbjct:   205 FEHCS-LPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262

 Score = 97 (39.2 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             G+D+  +  ++N  +P     YVH+IGRVGR  + G AI+ ++   +++++
Sbjct:   508 GLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558


>UNIPROTKB|Q3SZ65 [details] [associations]
            symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
            species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
            OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
            RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
            SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
            GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
            OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
        Length = 407

 Score = 185 (70.2 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 82 (33.9 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

 Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>UNIPROTKB|E2R3J1 [details] [associations]
            symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
            EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
            SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
            KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
        Length = 407

 Score = 185 (70.2 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 82 (33.9 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

 Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>UNIPROTKB|Q14240 [details] [associations]
            symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003743 "translation initiation factor
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
            "helicase activity" evidence=TAS] [GO:0006446 "regulation of
            translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
            translation initiation factor 4F complex" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
            pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
            GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
            GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
            CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
            EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
            IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
            UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
            ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
            STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
            PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
            Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
            UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
            HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
            PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
            EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
            PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
            Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
        Length = 407

 Score = 185 (70.2 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 82 (33.9 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

 Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>UNIPROTKB|A6M930 [details] [associations]
            symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
            isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003743 "translation initiation factor activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
            GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
            EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
            ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
            Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
            Uniprot:A6M930
        Length = 407

 Score = 185 (70.2 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 82 (33.9 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

 Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>MGI|MGI:106906 [details] [associations]
            symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
            initiation factor activity" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
            initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
            GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
            GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
            OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
            EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
            RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
            SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
            PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
            Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
            NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
            GermOnline:ENSMUSG00000022884 Uniprot:P10630
        Length = 407

 Score = 185 (70.2 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 82 (33.9 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

 Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>RGD|1309225 [details] [associations]
            symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
            species:10116 "Rattus norvegicus" [GO:0003743 "translation
            initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
            GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
            KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
            RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
            SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
            World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
            UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
            ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
            GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
        Length = 407

 Score = 185 (70.2 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 213

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258

 Score = 115 (45.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 384

 Score = 82 (33.9 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93

 Score = 44 (20.5 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   380 EDKRILRDIETFYNTTVEEM 399

 Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    64 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 96


>UNIPROTKB|F8WFX2 [details] [associations]
            symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
            OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
            Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
        Length = 408

 Score = 185 (70.2 bits), Expect = 5.3e-24, Sum P(4) = 5.3e-24
 Identities = 49/166 (29%), Positives = 94/166 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD-IVVGT 344
             QA+++ P+RELA+Q    I+    ++          IGG NV+++M  L +    IVVGT
Sbjct:   104 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 160

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D+++  +LS    + FVLDEAD +L +G+    D++++   K+ +    +Q+++ 
Sbjct:   161 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK---DQIYEIFQKLNTS---IQVVLL 214

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   DV ++ ++ M  P  + +K E+   E +    + ++ ++
Sbjct:   215 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 259

 Score = 115 (45.5 bits), Expect = 5.3e-24, Sum P(4) = 5.3e-24
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             GID+  +  +IN  LP ++ NY+HRIGR GR  R G+AI+ V+   +++
Sbjct:   337 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRI 385

 Score = 82 (33.9 bits), Expect = 5.3e-24, Sum P(4) = 5.3e-24
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F++M +   + + +    +  P+ +Q  AI   + G DV+  A++G+GKT  F + I+Q
Sbjct:    36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 94

 Score = 44 (20.5 bits), Expect = 5.3e-24, Sum P(4) = 5.3e-24
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query:   569 DEKRMLGEIEEHLNVTIQQV 588
             ++KR+L +IE   N T++++
Sbjct:   381 EDKRILRDIETFYNTTVEEM 400

 Score = 38 (18.4 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query:   190 VIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLK 222
             +I C+   D +  A +  G+    A +I QQL+
Sbjct:    65 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLE 97


>SGD|S000006040 [details] [associations]
            symbol:DBP1 "Putative ATP-dependent RNA helicase of the
            DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
            [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
            "translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
            "translation initiation factor activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
            SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
            STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
            KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
            NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
            Uniprot:P24784
        Length = 617

 Score = 190 (71.9 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
 Identities = 43/133 (32%), Positives = 76/133 (57%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P A+++ P+RELA Q F +    +KF     +R  ++ GG  + +QM  +  G D++V T
Sbjct:   238 PSALVLAPTRELATQIFEEA---RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVAT 294

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL+  G +SL + ++ VLDEAD +L  G+   I  + ++    + + +  Q ++ 
Sbjct:   295 PGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENR--QTLMF 352

Query:   405 SATLHDFDVKKMA 417
             SAT    D++ +A
Sbjct:   353 SATF-PVDIQHLA 364

 Score = 110 (43.8 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
 Identities = 33/112 (29%), Positives = 55/112 (49%)

Query:   407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGV 466
             TL   + K+MA++L  F    + K        +H    +   +++      ++++  D +
Sbjct:   414 TLIFVETKRMADQLTDFLIMQNFKAT-----AIHGD--RTQAERERALSAFKANV-ADIL 465

Query:   467 HARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
              A   A  G+DI  +  +IN  LP D  +YVHRIGR GRA   G+A S  ++
Sbjct:   466 VATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517

 Score = 100 (40.3 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             PT VQ  +IP++  G D++  A+TGSGKTG F  P+
Sbjct:   177 PTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPL 212


>TAIR|locus:2091191 [details] [associations]
            symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
            hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0035145 "exon-exon junction complex" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
            GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
            EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
            OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
            IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
            ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
            PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
            KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
            PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
            GermOnline:AT3G19760 Uniprot:Q94A52
        Length = 408

 Score = 171 (65.3 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 49/165 (29%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA QT   I   +       I+    IGG +V + +  L  GV +V GTP
Sbjct:   105 QALILSPTRELATQTEKTI---QAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTP 161

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I    L     +  +LDE+D +L +G+ + I  +++ +P    D   LQ+ + S
Sbjct:   162 GRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP---D---LQVCLVS 215

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             ATL   ++ +M  + M  P  + +K ++   E +    V ++ ++
Sbjct:   216 ATL-PHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEE 259

 Score = 112 (44.5 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             + +F +MG+  ++ + V E  +  P+ +Q  A+  IL G DV+  A++G+GKT    L +
Sbjct:    34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93

Query:    61 IQIVCETLKEIXXXXXXXXXXXXVISPTWILSVWDRDTAMAI 102
              Q+V  + +E+            ++SPT  L+     T  AI
Sbjct:    94 CQVVDTSSREVQAL---------ILSPTRELATQTEKTIQAI 126

 Score = 109 (43.4 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 29/69 (42%), Positives = 40/69 (57%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G  R  I TD V AR     GID+  +  +IN  LP+++  Y+HRIGR GR  R G+AI+
Sbjct:   323 GDSRVLITTD-VWAR-----GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 376

Query:   515 LVSTVPEKV 523
              V +   K+
Sbjct:   377 FVKSDDIKI 385


>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
            symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
            RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
            Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
            OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
        Length = 709

 Score = 186 (70.5 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 41/123 (33%), Positives = 73/123 (59%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q +++    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   315 PISLVLAPTRELALQIYDEA---RKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 371

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L +C++ VLDEAD +L  G+   I R+ +Q   +   G R Q ++ 
Sbjct:   372 PGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGSR-QTMMF 429

Query:   405 SAT 407
             SAT
Sbjct:   430 SAT 432

 Score = 114 (45.2 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   549 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 591

 Score = 103 (41.3 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-QIVCE 66
             PT VQ  AIP+I    D++  A+TGSGKT AF LP++ QI  E
Sbjct:   246 PTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSE 288


>UNIPROTKB|B4DXX7 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
            UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
            IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
            UCSC:uc011nar.1 Uniprot:B4DXX7
        Length = 657

 Score = 177 (67.4 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   262 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 318

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   319 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 376

Query:   405 SAT 407
             SAT
Sbjct:   377 SAT 379

 Score = 113 (44.8 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   496 AARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 538

 Score = 112 (44.5 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query:    17 VEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             +E   +  PT VQ  AIP+I G  D++  A+TGSGKT AF LPI+
Sbjct:   190 IELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPIL 234


>UNIPROTKB|O15523 [details] [associations]
            symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
            HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
            EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
            RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
            SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
            PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
            Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
            KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
            HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
            InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
            NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
            Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
        Length = 660

 Score = 177 (67.4 bits), Expect = 6.4e-24, Sum P(3) = 6.4e-24
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   265 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 321

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   322 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 379

Query:   405 SAT 407
             SAT
Sbjct:   380 SAT 382

 Score = 113 (44.8 bits), Expect = 6.4e-24, Sum P(3) = 6.4e-24
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   499 AARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 541

 Score = 112 (44.5 bits), Expect = 6.4e-24, Sum P(3) = 6.4e-24
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query:    17 VEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             +E   +  PT VQ  AIP+I G  D++  A+TGSGKT AF LPI+
Sbjct:   193 IELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPIL 237


>TAIR|locus:2130918 [details] [associations]
            symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
            OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
            PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
            ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
            PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
            KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
            PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
            GermOnline:AT4G16630 Uniprot:Q9ZRZ8
        Length = 789

 Score = 178 (67.7 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
 Identities = 57/164 (34%), Positives = 87/164 (53%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
             A + +I+ P+RELA Q  + I    +F TD K    LI+GG++V++Q  VL S  DIVV 
Sbjct:   238 ATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCG--LIVGGLSVREQEVVLRSMPDIVVA 294

Query:   344 TPGRMED-LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             TPGRM D L +   + L      +LDEAD LL+ G+   I  + +  PK      R Q +
Sbjct:   295 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPK------RRQTM 348

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI 446
             + SAT+ + +VK++ +  +  P  +        P  +   VV+I
Sbjct:   349 LFSATMTE-EVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRI 391

 Score = 117 (46.2 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F E+ +   + +A E + +  PT +QA  IPL L G D+  +A TGSGKT AF LP ++
Sbjct:   169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227

 Score = 110 (43.8 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             + D + A D A  G+DI G+  +IN   P +  +YVHR+GR  RA R G A++ V+
Sbjct:   462 EVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT 517


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 182 (69.1 bits), Expect = 6.9e-24, Sum P(3) = 6.9e-24
 Identities = 54/171 (31%), Positives = 86/171 (50%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P  +++ P+RELA Q   + +KF +     +I    + GG     Q+  L  G DIVV T
Sbjct:   231 PTILVLSPTRELATQIQEEAVKFGR---SSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++    +SL    + VLDEAD +L  G+   I ++ K+IP      KR Q ++ 
Sbjct:   288 PGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPT-----KR-QTLMY 341

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGED---AVPETVHHVVVKIDPQQDE 452
             +AT     V+K+A  L+  P  V++   D   A      H+ V + P + +
Sbjct:   342 TATWPK-GVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEV-VAPMEKQ 390

 Score = 111 (44.1 bits), Expect = 6.9e-24, Sum P(3) = 6.9e-24
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query:   445 KIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504
             K  P++D    + RS  +T  + A D A  G+D+  +  ++N   P+   +YVHRIGR G
Sbjct:   436 KSQPERDNVLNQFRSG-RTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTG 494

Query:   505 RAERMGLAIS 514
             RA   G A +
Sbjct:   495 RAGATGQAFT 504

 Score = 107 (42.7 bits), Expect = 6.9e-24, Sum P(3) = 6.9e-24
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
             + +FE  G  PE+ + V    +  PT +QA++ P+ + G D++  A+TGSGKT  + +P
Sbjct:   157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215


>DICTYBASE|DDB_G0287361 [details] [associations]
            symbol:ddx41 "DEAD box protein abstrakt"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
            GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
            EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
            IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
            KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
        Length = 671

 Score = 188 (71.2 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
 Identities = 49/177 (27%), Positives = 92/177 (51%)

Query:   277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITD----PKIRELLIIGGVNVKDQMS 332
             P+ +    P  +I+ PSRELA QT++ +  F   +      P++R LL IGG+++++Q  
Sbjct:   292 PI-IQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEH 350

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392
             +   GV +++ TPGR+ DL++   ++   C++  LDEAD L+  G+    D +   +   
Sbjct:   351 IFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFE---DDIRSVLDNF 407

Query:   393 TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ 449
             T+   + Q ++ SAT+    +++ A   +  P  V++    A    V   V  + P+
Sbjct:   408 TN---QRQTLLFSATMPK-KIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPE 460

 Score = 112 (44.5 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
 Identities = 26/81 (32%), Positives = 42/81 (51%)

Query:   439 VHHVVVKIDPQQDETWGRLRSHIQ--TDGVHARDNARPGIDISGLPFIINMTLPDDKANY 496
             V  V +  D  QDE    +++  +   D + A D A  G+D   +  +IN  +P +  NY
Sbjct:   499 VEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENY 558

Query:   497 VHRIGRVGRAERMGLAISLVS 517
             +HRIGR GR    G+A + ++
Sbjct:   559 IHRIGRTGRRGNKGVATTFIN 579

 Score = 101 (40.6 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             +  F+EM +   +   + E     P+ +Q + +P+IL G D++  A TGSGKT  F LP+
Sbjct:   221 ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM 280

Query:    61 IQIVCE 66
             +    E
Sbjct:   281 VLFALE 286


>TIGR_CMR|GSU_0189 [details] [associations]
            symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
            ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
            PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
            Uniprot:Q74GQ7
        Length = 460

 Score = 188 (71.2 bits), Expect = 7.6e-24, Sum P(3) = 7.6e-24
 Identities = 55/160 (34%), Positives = 85/160 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+++ P+RELA+Q   ++ +  +F TD  I+ L I GGV    Q+  L  G  +V+GTP
Sbjct:    74 QALVLCPTRELADQVGKELRRLARF-TD-NIKILTICGGVPFGPQLGSLEHGAHVVIGTP 131

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D +  G L L+  R  VLDEAD +L  G+ + I  +    P      KR Q ++ S
Sbjct:   132 GRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPP-----KR-QTLLFS 185

Query:   406 ATLHDFDVKKMAERLMYFPTWV---DLKGEDAVPETVHHV 442
             AT  D  +  M+  +   P  V   ++ GE A+ +  + V
Sbjct:   186 ATYPD-SIAAMSAGVQREPVEVSVDEVHGEGAIEQVFYEV 224

 Score = 104 (41.7 bits), Expect = 7.6e-24, Sum P(3) = 7.6e-24
 Identities = 24/50 (48%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  L  +IN  L  +   + HRIGR GRA   GLA+SLV+
Sbjct:   298 ATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVT 347

 Score = 100 (40.3 bits), Expect = 7.6e-24, Sum P(3) = 7.6e-24
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             AF  + +   + + +  + +   T +QA ++PLIL G DV+  A+TGSGKT AF + ++
Sbjct:     5 AFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63


>UNIPROTKB|Q8EJQ5 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 184 (69.8 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
 Identities = 57/182 (31%), Positives = 95/182 (52%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             N P+AII+ P+RELA Q     I   K     +++  ++ GG +   Q  VL  GVDI++
Sbjct:    83 NQPRAIIMAPTRELAIQIAKDAILLAKHT---RLKVGIVYGGESYDVQRKVLDQGVDILI 139

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             GT GR+ D +  G ++L   +  VLDEAD +   G+   I  + +++P   +D +RL M+
Sbjct:   140 GTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPN--AD-QRLNML 196

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
               SATL    V+++A   M  P  V++  E+   + +   +    P Q++    L + I+
Sbjct:   197 F-SATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFY--PSQEDKMRLLLTLIE 252

Query:   463 TD 464
              D
Sbjct:   253 ED 254

 Score = 116 (45.9 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             Q D + A D A  G+ IS +  + N  LPDD  +YVHRIGR GRA   G+++S
Sbjct:   306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVS 358

 Score = 91 (37.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56
             F ++ + PE+ +A+ E  +   T +QA ++P++L   D+   A+TG+GKT AF
Sbjct:    11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAF 63

 Score = 41 (19.5 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
 Identities = 28/105 (26%), Positives = 46/105 (43%)

Query:   217 ISQQLKNSAFYPAVVLKNAEMSFNFGATP-----FKHEPPKDY-IAVCNAPKQNVKHSES 270
             + Q + N     AVVL  A+  F+ G        F+  P  D  + +  +   ++K  E 
Sbjct:   149 VRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQEL 208

Query:   271 A-DVSAGPVKLVNNAPQAIIIEPSRELAEQTF--NQIIKFKKFIT 312
             A D    PVK V  AP+    + S+ + E+ F  +Q  K +  +T
Sbjct:   209 AYDHMNDPVK-VEIAPEE---KTSKNIKEEIFYPSQEDKMRLLLT 249


>TIGR_CMR|SO_0407 [details] [associations]
            symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 184 (69.8 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
 Identities = 57/182 (31%), Positives = 95/182 (52%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             N P+AII+ P+RELA Q     I   K     +++  ++ GG +   Q  VL  GVDI++
Sbjct:    83 NQPRAIIMAPTRELAIQIAKDAILLAKHT---RLKVGIVYGGESYDVQRKVLDQGVDILI 139

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             GT GR+ D +  G ++L   +  VLDEAD +   G+   I  + +++P   +D +RL M+
Sbjct:   140 GTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPN--AD-QRLNML 196

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
               SATL    V+++A   M  P  V++  E+   + +   +    P Q++    L + I+
Sbjct:   197 F-SATL-SMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFY--PSQEDKMRLLLTLIE 252

Query:   463 TD 464
              D
Sbjct:   253 ED 254

 Score = 116 (45.9 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:   462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             Q D + A D A  G+ IS +  + N  LPDD  +YVHRIGR GRA   G+++S
Sbjct:   306 QLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVS 358

 Score = 91 (37.1 bits), Expect = 7.9e-24, Sum P(3) = 7.9e-24
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56
             F ++ + PE+ +A+ E  +   T +QA ++P++L   D+   A+TG+GKT AF
Sbjct:    11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAF 63

 Score = 41 (19.5 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
 Identities = 28/105 (26%), Positives = 46/105 (43%)

Query:   217 ISQQLKNSAFYPAVVLKNAEMSFNFGATP-----FKHEPPKDY-IAVCNAPKQNVKHSES 270
             + Q + N     AVVL  A+  F+ G        F+  P  D  + +  +   ++K  E 
Sbjct:   149 VRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQEL 208

Query:   271 A-DVSAGPVKLVNNAPQAIIIEPSRELAEQTF--NQIIKFKKFIT 312
             A D    PVK V  AP+    + S+ + E+ F  +Q  K +  +T
Sbjct:   209 AYDHMNDPVK-VEIAPEE---KTSKNIKEEIFYPSQEDKMRLLLT 249


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 203 (76.5 bits), Expect = 8.5e-24, Sum P(3) = 8.5e-24
 Identities = 49/148 (33%), Positives = 88/148 (59%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P  +++ P+RELA Q   +   F++  + P +  + + GG  +  QM  L  GVD+ VGT
Sbjct:   179 PLCLVLAPTRELARQVEKE---FRE--SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGT 233

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL+  G L+L+  +F VLDEAD +L+ G+   ++ + +++P+     KR Q ++ 
Sbjct:   234 PGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE-----KR-QSMMF 287

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGE 432
             SAT+  + ++ + ++ +  P  VDL G+
Sbjct:   288 SATMPSW-IRSLTKKYLNNPLTVDLVGD 314

 Score = 100 (40.3 bits), Expect = 8.5e-24, Sum P(3) = 8.5e-24
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+D+  +  II+  LP++   +VHR GR GRA + G AI + S
Sbjct:   404 ATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYS 453

 Score = 94 (38.1 bits), Expect = 8.5e-24, Sum P(3) = 8.5e-24
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query:     3 AFEEMGVLPEIGKAVEE--MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             A  E+G+ PEI KA+    ++ L P  +Q   +   + G D++  A TG+GKT AF +PI
Sbjct:   105 AISELGISPEIVKALSSKGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPI 162

Query:    61 I 61
             I
Sbjct:   163 I 163


>POMBASE|SPAC31A2.07c [details] [associations]
            symbol:dbp10 "ATP-dependent RNA helicase Dbp10
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
            EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
            ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
            GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
            Uniprot:Q09719
        Length = 848

 Score = 181 (68.8 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
 Identities = 50/132 (37%), Positives = 71/132 (53%)

Query:   280 LVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD 339
             L N+  +A+I+ P+RELA QT   +  F K  TD  +R + I+GGV++++Q S+LS   D
Sbjct:   135 LANSNTRALILSPNRELALQTVKVVKDFSKG-TD--LRSVAIVGGVSLEEQFSLLSGKPD 191

Query:   340 IVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399
             IVV TPGR   L     L L+   + V DEAD L + G+   +  +   +P  TS    L
Sbjct:   192 IVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALP--TSRQTLL 249

Query:   400 QMIVCSATLHDF 411
                    TL DF
Sbjct:   250 FSATLPRTLVDF 261

 Score = 129 (50.5 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+ MG+   + +A+ +  +  PT +Q + IPL+L G DV+  A TGSGKT AF +P+I+ 
Sbjct:    71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130

Query:    64 VCETL 68
             +  TL
Sbjct:   131 LKSTL 135

 Score = 95 (38.5 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
 Identities = 23/47 (48%), Positives = 26/47 (55%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             D A  GIDI  L  +IN   P     +VHR+GR  RA R G A SLV
Sbjct:   404 DVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLV 450


>ASPGD|ASPL0000077157 [details] [associations]
            symbol:AN10557 species:162425 "Emericella nidulans"
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            [GO:0010628 "positive regulation of gene expression" evidence=IEA]
            [GO:0097308 "cellular response to farnesol" evidence=IEP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
            PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
        Length = 668

 Score = 187 (70.9 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
 Identities = 49/169 (28%), Positives = 89/169 (52%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++I+ P+REL  Q F++    +KF     +R  ++ GG ++  Q+  +  G D++V T
Sbjct:   272 PTSLILAPTRELVSQIFDEA---RKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT 328

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRM--HKQIPKITSDGKRLQMI 402
             PGR+ DLI  G +SL + ++ +LDEAD +L  G+   I R+   + +P +       Q +
Sbjct:   329 PGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDR----QTL 384

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD 451
             + SAT    D++ +A    +   +V L     V  T  ++  K++  +D
Sbjct:   385 MFSATFPR-DIQMLARD--FLKDYVFLS-VGRVGSTSENITQKVEYVED 429

 Score = 109 (43.4 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             PT VQ  +IP+++ G D++  A+TGSGKTG F  PI+
Sbjct:   209 PTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPIL 245

 Score = 103 (41.3 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
 Identities = 21/41 (51%), Positives = 26/41 (63%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLA 512
             A  G+DI  +  +IN  LP D  +YVHRIGR GRA   G+A
Sbjct:   506 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 546


>UNIPROTKB|I3LV06 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
            Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
            Uniprot:I3LV06
        Length = 607

 Score = 192 (72.6 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
 Identities = 50/167 (29%), Positives = 94/167 (56%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             + AP A+++ P+RELA Q   Q  +    +  P++R  L++GG+    Q+  L   V ++
Sbjct:   257 SKAPSALVLTPTRELAIQIERQAKELMGGL--PRMRTALLVGGLPAPPQLHRLRQRVQVI 314

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             + TPGR+ D++    + L + +  V+DEAD +LK G+   +  + + +P+   D    Q 
Sbjct:   315 IATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQ---D---CQT 368

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP-ETVHHVVVKID 447
             I+ SAT+    ++++A RL++ P  V L GE  +P  +V  +V+ ++
Sbjct:   369 ILVSATIPT-RIEQLASRLLHDPVRV-LAGEKNLPCPSVRQIVLWVE 413

 Score = 107 (42.7 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query:    24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             +PT +Q + IP+ L G D+L +A+TGSGKT AF LP+I
Sbjct:   213 VPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVI 250

 Score = 97 (39.2 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             G+D+  +  ++N  +P     YVH++GRVGR  + G AI+ ++   +++++
Sbjct:   496 GLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 546


>UNIPROTKB|F1NIX2 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
            Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
        Length = 636

 Score = 178 (67.7 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   244 PISLVLAPTRELAVQIYEEA---RKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 300

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   301 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 358

Query:   405 SAT 407
             SAT
Sbjct:   359 SAT 361

 Score = 115 (45.5 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 36/93 (38%), Positives = 46/93 (49%)

Query:   430 KGEDAVPETVHH---VVVKI--DPQQ---DETWGRLRSHIQTDGVHARDNARPGIDISGL 481
             KG DA+ + ++H       I  D  Q   +E   + RS      V     AR G+DIS +
Sbjct:   429 KGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR-GLDISNV 487

Query:   482 PFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
               +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   488 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 520

 Score = 105 (42.0 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query:    17 VEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-QIVCE 66
             +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+ QI  +
Sbjct:   171 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYAD 221


>UNIPROTKB|F1NIX1 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
            IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
            Uniprot:F1NIX1
        Length = 638

 Score = 178 (67.7 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   245 PISLVLAPTRELAVQIYEEA---RKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 301

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   302 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 359

Query:   405 SAT 407
             SAT
Sbjct:   360 SAT 362

 Score = 115 (45.5 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 36/93 (38%), Positives = 46/93 (49%)

Query:   430 KGEDAVPETVHH---VVVKI--DPQQ---DETWGRLRSHIQTDGVHARDNARPGIDISGL 481
             KG DA+ + ++H       I  D  Q   +E   + RS      V     AR G+DIS +
Sbjct:   430 KGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR-GLDISNV 488

Query:   482 PFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
               +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   489 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 521

 Score = 105 (42.0 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query:    17 VEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-QIVCE 66
             +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+ QI  +
Sbjct:   173 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYAD 223


>DICTYBASE|DDB_G0293064 [details] [associations]
            symbol:DDB_G0293064 species:44689 "Dictyostelium
            discoideum" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
            RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
            EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
            InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
        Length = 573

 Score = 165 (63.1 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 42/117 (35%), Positives = 62/117 (52%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             + A P +     P  +++ P+RELA Q  NQ  + ++++    I    I GG   + Q  
Sbjct:   201 ILAQPRQSYYPGPSVLVVAPTRELANQ-INQ--EAEQYLRLVNIEIATIYGGAPRRSQQL 257

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQI 389
              LS    IVVGTPGR+ D +  G LSL +  F V+DEAD L++ G+   ID +   I
Sbjct:   258 QLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSI 314

 Score = 141 (54.7 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 41/136 (30%), Positives = 71/136 (52%)

Query:   382 IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH 441
             +D +   + +I S  ++ Q ++ + T      KK A+ L ++   +   G++   +T+H 
Sbjct:   372 VDALMDTLGEIYSADEKAQTLIFTMT------KKGADTLKHY---IQSNGDNVRIDTLHG 422

Query:   442 VVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIG 501
                 +D  + E   +   + + D V A D A  G+DI G+  +IN +LP D   YVHRIG
Sbjct:   423 ---DVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIG 479

Query:   502 RVGRAERMGLAISLVS 517
             R GRA  +G + S++S
Sbjct:   480 RTGRAGALGTSHSILS 495

 Score = 91 (37.1 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             PT VQ+   P+ L G D+L  ++TGSGKT +F LP I+
Sbjct:   162 PTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIE 199


>ASPGD|ASPL0000051195 [details] [associations]
            symbol:AN1634 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
            GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
            HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
            ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
            GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
        Length = 782

 Score = 175 (66.7 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 39/115 (33%), Positives = 71/115 (61%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPK-IRELLIIGGVNVKDQMSVLSSGVDI 340
             N+ P AI++ P+RELA+Q     I+ KKF T+P     + I+GG + ++Q   L +G +I
Sbjct:   422 NDGPYAIVLAPTRELAQQIE---IEAKKF-TEPLGFNVVSIVGGHSFEEQAYSLRNGAEI 477

Query:   341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSD 395
             ++ TPGR+ D I    L L+ C + ++DEAD ++  G+   ++++   +P +T++
Sbjct:   478 IIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP-VTNE 531

 Score = 114 (45.2 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M +++E G+   + + V+ + +  PT +Q  AIP+ +   D++  A TGSGKT AF LP+
Sbjct:   345 MRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL 404

Query:    61 IQIVCE 66
             +  + E
Sbjct:   405 LCYIAE 410

 Score = 113 (44.8 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query:   445 KIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504
             K   Q++     +R+   TD + A D A  GID+  +  +IN  +     +Y HRIGR G
Sbjct:   655 KTQEQREAALASVRNG-STDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTG 713

Query:   505 RAERMGLAISLVSTVPEKVWY 525
             RA + G+AI+ +      V Y
Sbjct:   714 RAGKSGVAITFLGNEDADVMY 734

 Score = 40 (19.1 bits), Expect = 5.5e-16, Sum P(3) = 5.5e-16
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query:   250 PPKDYIAVCNAPKQNVKHSESADVSAGP 277
             PP+D  A    P+++       DVSA P
Sbjct:    12 PPEDASAPPPPPEESAAPPPPPDVSAPP 39


>ZFIN|ZDB-GENE-031030-3 [details] [associations]
            symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
            HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
            RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
            STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
            NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
        Length = 468

 Score = 146 (56.5 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
 Identities = 41/124 (33%), Positives = 69/124 (55%)

Query:   288 IIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGR 347
             +++ P+RELA Q   Q   F+       +++ +I+GG+++  Q   LS    +VV TPGR
Sbjct:    74 LVLTPTRELAYQIAEQ---FRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGR 130

Query:   348 MEDLI-SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406
             + D I S   ++L   +F ++DEAD LL+QG  +    +   +  + +  KR Q ++ SA
Sbjct:   131 LADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPA--KR-QTLLFSA 187

Query:   407 TLHD 410
             TL D
Sbjct:   188 TLTD 191

 Score = 132 (51.5 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             MA FE +G+   + +  ++M    PT VQ + IP IL G D +  A+TGSGKT AF LP+
Sbjct:     1 MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query:    61 IQIVCE 66
             +Q + E
Sbjct:    61 LQKLSE 66

 Score = 97 (39.2 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A D A  G+DI  +  +IN   P     Y+HR+GR  RA R G++I+LV+
Sbjct:   304 ATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVT 353

 Score = 58 (25.5 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
 Identities = 22/81 (27%), Positives = 43/81 (53%)

Query:   569 DEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQMEPSVN 628
             +EK +L +I   +NVT +Q + KLE  + +FD K    +++  +    +  +   E   N
Sbjct:   377 EEKEVL-KILTQVNVTRRQCEIKLE--STDFDEKKKINKRKQMILDGKDPDLE--EKRKN 431

Query:   629 KLSKLESKAQLIYLKHHQAKQ 649
             +L K+  K + +  K+ Q+K+
Sbjct:   432 ELEKIRGKNKKLKGKNPQSKK 452


>TAIR|locus:2087832 [details] [associations]
            symbol:PMH1 "putative mitochondrial RNA helicase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
            GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
            EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
            UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
            STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
            GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
            InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
            Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
        Length = 610

 Score = 208 (78.3 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
 Identities = 48/148 (32%), Positives = 89/148 (60%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             PQ +++ P+RELA Q   +   F++  + P +  + + GG  +  QM  L+ G+D+ VGT
Sbjct:   191 PQCLVLAPTRELARQVEKE---FRE--SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGT 245

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ DL+  G L+L+  +F VLDEAD +L+ G+   ++ + +++P      KR Q ++ 
Sbjct:   246 PGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLP-----AKR-QSMMF 299

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGE 432
             SAT+  + ++ + ++ +  P  +DL G+
Sbjct:   300 SATMPSW-IRSLTKKYLNNPLTIDLVGD 326

 Score = 96 (38.9 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAI 513
             A D A  G+D+  +  +I+  LP++   +VHR GR GRA + G AI
Sbjct:   416 ATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI 461

 Score = 89 (36.4 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query:     3 AFEEMGVLPEIGKAVEE--MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             A  ++G+ PEI KA++   ++ L P  +Q   +   + G D++  A TG+GKT AF +PI
Sbjct:   117 AIADLGISPEIVKALKGRGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPI 174

Query:    61 I 61
             I
Sbjct:   175 I 175


>TAIR|locus:2057640 [details] [associations]
            symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
            RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
            SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
            EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
            GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
            ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
            Uniprot:P93008
        Length = 733

 Score = 169 (64.5 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
 Identities = 32/94 (34%), Positives = 57/94 (60%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P A+++ P+RELA+Q   + +KF  ++     R   I+GG ++++Q   ++ G +IV+ T
Sbjct:   390 PYAVVMAPTRELAQQIEEETVKFAHYLG---FRVTSIVGGQSIEEQGLKITQGCEIVIAT 446

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGY 378
             PGR+ D +   +  L  C + VLDEAD ++  G+
Sbjct:   447 PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 480

 Score = 128 (50.1 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
 Identities = 33/88 (37%), Positives = 47/88 (53%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             M ++EE  +  E+ KAVE   +  P+ +Q  AIPL L   DV+  AETGSGKT AF LP+
Sbjct:   312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371

Query:    61 IQIVCETLKEIXXXXXXXXXXXXVISPT 88
             +  +   L  +            V++PT
Sbjct:   372 LAYISR-LPPMSEENETEGPYAVVMAPT 398

 Score = 103 (41.3 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             A D    GIDI  +  +IN  +P     Y HRIGR GRA + G+A S ++    +V+Y
Sbjct:   632 ATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFY 689

 Score = 44 (20.5 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query:   334 LSSGVDIVVGTPGRMEDLISGGHLSLTHC-RFFVLDE 369
             L + V + +GT G+  DLIS   + +    +FF L +
Sbjct:   533 LRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQK 569


>RGD|1309586 [details] [associations]
            symbol:RGD1309586 "similar to probable ATP-dependent RNA
            helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
            OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
            RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
            GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
            NextBio:684798 Uniprot:D3ZN21
        Length = 659

 Score = 177 (67.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   265 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 321

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   322 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 379

Query:   405 SAT 407
             SAT
Sbjct:   380 SAT 382

 Score = 114 (45.2 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   499 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 541

 Score = 106 (42.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   184 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 237


>MGI|MGI:91842 [details] [associations]
            symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
            GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
            GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
            KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
            IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
            ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
            PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
            Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
            InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
            Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
            GermOnline:ENSMUSG00000039224 Uniprot:P16381
        Length = 660

 Score = 177 (67.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   266 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 322

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   323 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 380

Query:   405 SAT 407
             SAT
Sbjct:   381 SAT 383

 Score = 114 (45.2 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   500 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 542

 Score = 106 (42.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   185 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238


>UNIPROTKB|G5E631 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
            OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
            PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
            KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
        Length = 661

 Score = 177 (67.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   266 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 322

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   323 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 380

Query:   405 SAT 407
             SAT
Sbjct:   381 SAT 383

 Score = 114 (45.2 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   500 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 542

 Score = 106 (42.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   185 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238


>UNIPROTKB|F1RX16 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
            EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
        Length = 661

 Score = 177 (67.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   267 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 323

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   324 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 381

Query:   405 SAT 407
             SAT
Sbjct:   382 SAT 384

 Score = 114 (45.2 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543

 Score = 106 (42.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   186 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239


>UNIPROTKB|J9P0V9 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
            RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
            KEGG:cfa:480886 Uniprot:J9P0V9
        Length = 662

 Score = 177 (67.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   267 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 323

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   324 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 381

Query:   405 SAT 407
             SAT
Sbjct:   382 SAT 384

 Score = 114 (45.2 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543

 Score = 106 (42.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   186 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239


>UNIPROTKB|O00571 [details] [associations]
            symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
            "mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
            regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IDA] [GO:1900087
            "positive regulation of G1/S transition of mitotic cell cycle"
            evidence=IMP] [GO:0045948 "positive regulation of translational
            initiation" evidence=IMP] [GO:0031333 "negative regulation of
            protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
            initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
            regulation of translation" evidence=IMP] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
            stress" evidence=IDA] [GO:0071243 "cellular response to
            arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
            regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
            [GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
            "cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
            initiation factor binding" evidence=IDA] [GO:0042256 "mature
            ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
            subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
            [GO:0009615 "response to virus" evidence=IDA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IDA] [GO:0032728
            "positive regulation of interferon-beta production" evidence=TAS]
            [GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
            "positive regulation of chemokine (C-C motif) ligand 5 production"
            evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IDA] [GO:0030308 "negative
            regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
            apoptotic signaling pathway via death domain receptors"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0043154 "negative regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
            evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IMP]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
            GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
            GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
            GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
            GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
            GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
            GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
            GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
            GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
            KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
            EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
            EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
            IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
            UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
            PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
            DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
            PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
            SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
            Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
            KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
            HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
            neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
            OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
            ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
            GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
            CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
            GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
            GO:GO:0032728 Uniprot:O00571
        Length = 662

 Score = 177 (67.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   267 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 323

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   324 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 381

Query:   405 SAT 407
             SAT
Sbjct:   382 SAT 384

 Score = 114 (45.2 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543

 Score = 106 (42.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   186 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239


>MGI|MGI:103064 [details] [associations]
            symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
            X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
            "RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
            "mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
            catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
            of translation" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
            [GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=ISO]
            [GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
            initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
            apoptotic signaling pathway via death domain receptors"
            evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
            "RNA secondary structure unwinding" evidence=ISO] [GO:0016020
            "membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030307 "positive regulation of cell growth" evidence=ISO]
            [GO:0030308 "negative regulation of cell growth" evidence=ISO]
            [GO:0031333 "negative regulation of protein complex assembly"
            evidence=ISO] [GO:0031369 "translation initiation factor binding"
            evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
            [GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
            assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
            binding" evidence=ISO] [GO:0043065 "positive regulation of
            apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
            of apoptotic process" evidence=ISO] [GO:0043154 "negative
            regulation of cysteine-type endopeptidase activity involved in
            apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=ISO] [GO:0045087 "innate immune response"
            evidence=ISO] [GO:0045727 "positive regulation of translation"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0045948
            "positive regulation of translational initiation" evidence=ISO]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=ISO]
            [GO:0071470 "cellular response to osmotic stress" evidence=ISO]
            [GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
            [GO:1900087 "positive regulation of G1/S transition of mitotic cell
            cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
            apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
            GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
            GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
            GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
            GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
            GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
            GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
            GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
            GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
            GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
            HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
            GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
            IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
            ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
            MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
            REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
            Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
            InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
            Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
        Length = 662

 Score = 176 (67.0 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 41/123 (33%), Positives = 69/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG  +  Q+  L  G  ++V T
Sbjct:   267 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVAT 323

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   324 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 381

Query:   405 SAT 407
             SAT
Sbjct:   382 SAT 384

 Score = 114 (45.2 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543

 Score = 107 (42.7 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-QIV 64
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+ QI 
Sbjct:   186 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIY 243

Query:    65 CE 66
              +
Sbjct:   244 AD 245


>RGD|1564771 [details] [associations]
            symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
            X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
            PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
            Uniprot:D4ADE8
        Length = 662

 Score = 176 (67.0 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 41/123 (33%), Positives = 69/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG  +  Q+  L  G  ++V T
Sbjct:   267 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVAT 323

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   324 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 381

Query:   405 SAT 407
             SAT
Sbjct:   382 SAT 384

 Score = 114 (45.2 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   501 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543

 Score = 107 (42.7 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-QIV 64
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+ QI 
Sbjct:   186 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIY 243

Query:    65 CE 66
              +
Sbjct:   244 AD 245


>DICTYBASE|DDB_G0275443 [details] [associations]
            symbol:helB1 "putative RNA splicing factor"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
            GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
            EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
            ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
            GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
            ProtClustDB:CLSZ2500419 Uniprot:Q553B1
        Length = 1151

 Score = 181 (68.8 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 53/167 (31%), Positives = 87/167 (52%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+I+ P+RELA Q   +  KF K +    +R   + GG ++ +Q++ L  G DIVV TPG
Sbjct:   585 ALIMSPTRELALQIHVECKKFSKVLG---LRTACVYGGASISEQIAELKRGADIVVCTPG 641

Query:   347 RMEDLISGGHLSLTHCR---FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             RM D++   +  +T+ R   F VLDEAD +   G+G  I+ +   +  I  D    Q I+
Sbjct:   642 RMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCI---VDSIRPDR---QTIM 695

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
              SAT     V+ +A++++  P  +   G   V   +   V ++ P +
Sbjct:   696 FSATFPP-KVENVAKKILNKPLEIIAGGRSIVSSDIEQFV-EVRPTE 740

 Score = 115 (45.5 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query:   445 KIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504
             K    +DET    ++ ++T  + A   A  G+DI  L  ++N   PD   +YVHR+GR G
Sbjct:   790 KDQTDRDETISDFKNKVKTILI-ATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTG 848

Query:   505 RAERMGLAISLVSTVPEK 522
             RA   G A + ++   E+
Sbjct:   849 RAGNRGTAYTFITPDEER 866

 Score = 110 (43.8 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 21/60 (35%), Positives = 38/60 (63%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             ++ + G+  ++   +++  +  PT +QA+ IP I+ G D++  A TGSGKT AF LP+ +
Sbjct:   510 SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFR 569


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 167 (63.8 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
 Identities = 50/176 (28%), Positives = 85/176 (48%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A++I P+RELA Q     I+  K +   K+  +   GG N++D +  L   V +V+ TPG
Sbjct:   169 AVVIVPTRELALQVSQICIQVSKHMGGVKV--MATTGGTNLRDDIMRLDETVHVVIATPG 226

Query:   347 RMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406
             R+ DLI  G   +   +  VLDEAD LL Q +  +++ +      ++S  K+ Q+++ SA
Sbjct:   227 RILDLIKKGVAKVGQVQMIVLDEADKLLSQDFVQMMEEI------LSSLSKQRQILLYSA 280

Query:   407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
             T     V+K     +  P  ++L  E  +     +     + Q+      L S +Q
Sbjct:   281 TF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQ 335

 Score = 125 (49.1 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             FE+  +  E+   + EM W  P+ +Q E+IP+ L G D+L  A+ G+GK+GA+ +P+++
Sbjct:    99 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 157

 Score = 99 (39.9 bits), Expect = 2.3e-23, Sum P(3) = 2.3e-23
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GIDI  +  +IN   P     Y+HRIGR GR   +GLAI+L++
Sbjct:   399 GIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLIT 441

 Score = 38 (18.4 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   558 GTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593
             G  +N   I +D++  L  IEE L   I+ +   ++
Sbjct:   434 GLAIN--LITYDDRFNLKGIEEQLGTEIKPIPSSID 467

 Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query:   199 NMTVAFTKNGQHLGLAFNISQQLKNSAFY 227
             N ++ F  + Q + L      QL  S FY
Sbjct:   337 NQSIIFCNSSQRVELLAKKISQLGYSCFY 365


>UNIPROTKB|I3L976 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
        Length = 456

 Score = 169 (64.5 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+++GV   + +A +++ W  PT +Q EAIPL L G D++  AETGSGKTGAF LPI+  
Sbjct:    25 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 84

Query:    64 VCET 67
             + ET
Sbjct:    85 LLET 88

 Score = 132 (51.5 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
 Identities = 32/106 (30%), Positives = 58/106 (54%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+++ P+RELA Q   Q   F+   +   ++  +I+GG++   Q   L+    IV+ TPG
Sbjct:    94 ALVLTPTRELAFQISEQ---FEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPG 150

Query:   347 RMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
             R+ D +      +L   ++ V+DEAD +L   +   +D++ K IP+
Sbjct:   151 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 196

 Score = 88 (36.0 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508
             A D A  G+DI  +  ++N  +P    +Y+HR+GR  RA R
Sbjct:   318 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGR 358


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 217 (81.4 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
 Identities = 58/164 (35%), Positives = 93/164 (56%)

Query:   269 ESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328
             E+ D +A   +     P+ +++ P+RELA+Q   +I   K+  + P +  + + GGV+  
Sbjct:   167 EAGDYTA--FRRSGRLPKFLVLAPTRELAKQVEKEI---KE--SAPYLSTVCVYGGVSYT 219

Query:   329 DQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQ 388
              Q S L+ GVD+VVGTPGR+ DLI G  L L    + VLDEAD +L  G+   ++ + + 
Sbjct:   220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279

Query:   389 IPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
             +P      KR  M+  SAT+  + VKK+A + +  P  +DL G+
Sbjct:   280 LPT-----KRQSMLF-SATMPTW-VKKLARKYLDNPLNIDLVGD 316

 Score = 104 (41.7 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522
             A D A  G+DI  +  +I+  LP+D   +VHR GR GRA + G AI L+ T  +K
Sbjct:   406 ATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAI-LMHTSSQK 459

 Score = 74 (31.1 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query:    23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
             L P   +A  +P  L G D++  A+TG+GKT AF +PII+ + E
Sbjct:   125 LFPIQ-RAVLVPA-LQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166


>WB|WBGene00002244 [details] [associations]
            symbol:laf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
            "masculinization of hermaphroditic germ-line" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
            EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
            ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
            KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
            ArrayExpress:D0PV95 Uniprot:D0PV95
        Length = 708

 Score = 179 (68.1 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
 Identities = 56/183 (30%), Positives = 94/183 (51%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGG-VNVKDQMSVLSSGVDIVVG 343
             P A+++ P+REL+ Q FN+    +KF     I   L+ GG  N KDQ+  L  G  I++ 
Sbjct:   316 PSALVLSPTRELSLQIFNES---RKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIA 372

Query:   344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
             TPGR+ D++  G + +  CR+ VLDEAD +L  G+   I R   +  ++ S  +R+  + 
Sbjct:   373 TPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQI-RQIVECNRMPSKEERITAMF 431

Query:   404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID-PQQDETWGRLRSHIQ 462
              SAT    +++ +A+  +    +V L     V  T  +++ KI   ++DE    L   + 
Sbjct:   432 -SATFPK-EIQLLAQDFLK-ENYVFL-AVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLD 487

Query:   463 TDG 465
               G
Sbjct:   488 ATG 490

 Score = 111 (44.1 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
 Identities = 21/66 (31%), Positives = 40/66 (60%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             ++ F ++ +   I + ++   +  PT VQ  +IP + GG D++  A+TGSGKT AF +P+
Sbjct:   230 ISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPL 289

Query:    61 IQIVCE 66
             +  + +
Sbjct:   290 VNAILQ 295

 Score = 107 (42.7 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
 Identities = 22/43 (51%), Positives = 26/43 (60%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DI  +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   552 AARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATS 594


>UNIPROTKB|E2RRQ7 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
            Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
        Length = 706

 Score = 177 (67.4 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   309 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 365

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   366 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 423

Query:   405 SAT 407
             SAT
Sbjct:   424 SAT 426

 Score = 114 (45.2 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   545 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 587

 Score = 106 (42.4 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   228 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 281


>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
            symbol:PFL1310c "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
            metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
            ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
            EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
            EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
            Uniprot:Q8I5E7
        Length = 742

 Score = 189 (71.6 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
 Identities = 53/160 (33%), Positives = 87/160 (54%)

Query:   288 IIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGR 347
             +I+ P+REL  Q  ++I  F+K +  P I+ + + GGV    Q++ L  G DI+V TPGR
Sbjct:   431 LILLPTRELCLQVLDEIKSFEKNL--P-IKSVAVYGGVPKYYQINNLKKGADIIVATPGR 487

Query:   348 MEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSA 406
             + D +  G+++L  C + V+DEAD LL  G+        KQ+ KI T   K  Q++  +A
Sbjct:   488 LLDFLENGNINLLKCIYVVIDEADRLLDMGF-------EKQLRKIMTQVNKNKQLLFLTA 540

Query:   407 TLHDFDVKKMA-ERLMYFPTWVDL-KGEDAVPETVHHVVV 444
             T  +  V+K+A +   Y P  + + K E    + +   V+
Sbjct:   541 TWPE-QVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVI 579

 Score = 116 (45.9 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
 Identities = 31/88 (35%), Positives = 49/88 (55%)

Query:   447 DPQQDETWGRLRSHIQTDGVH---ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRV 503
             D QQ E   R+ ++ +TD  +   A D A  G+DI  +  +IN  +P+   +Y+HRIGR 
Sbjct:   633 DKQQRER-DRILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRT 691

Query:   504 GRAERMGLAISLVST---VPEKVWYHGE 528
             GRA + G +I   S    +P+K+ +  E
Sbjct:   692 GRAGKKGKSILFFSYDYYMPQKLKFAKE 719

 Score = 91 (37.1 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEI 71
             PT +Q    P+ L G D++  AETGSGKT AF LP    + +  KEI
Sbjct:   310 PTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKH-KEI 355


>UNIPROTKB|Q9KV52 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 179 (68.1 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
 Identities = 57/181 (31%), Positives = 95/181 (52%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+AII+ P+RELA Q FN     +  +    ++  L  GG +   Q++ L SGVDI++GT
Sbjct:    85 PRAIIMAPTRELAIQIFNDA---EPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGT 141

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
              GR+ D       +L H +  VLDEAD +   G+   I  + +++P+   D  RL M+  
Sbjct:   142 TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE-PKD--RLNMLF- 197

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID-PQQDETWGRLRSHIQT 463
             SATL  + V+++A   M  P  V ++ E    +T H +  ++  P  +     L++ I+ 
Sbjct:   198 SATL-SYRVQELAFEHMNNPEHVVVEPEQ---KTGHRIQEELFYPSNEHKMALLQTLIEE 253

Query:   464 D 464
             +
Sbjct:   254 E 254

 Score = 103 (41.3 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A D A  G+ I  +  + N  LPDD  +YVHRIGR GRA   G +IS
Sbjct:   312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358

 Score = 103 (41.3 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56
             F + G+ P++   +E+  ++  T +QA A+P++L G D+   A+TG+GKT AF
Sbjct:    11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF 63

 Score = 46 (21.3 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
 Identities = 21/83 (25%), Positives = 39/83 (46%)

Query:   219 QQLKNSAFYPAVVLKNAEMSFNFGATP-----FKHEP-PKDYIAVCNAPKQNVKHSESAD 272
             Q++ N     AVVL  A+  F+ G        F+  P PKD + +  +   + +  E A 
Sbjct:   151 QRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA- 209

Query:   273 VSAGPVKLVNNAPQAIIIEPSRE 295
                   + +NN P+ +++EP ++
Sbjct:   210 -----FEHMNN-PEHVVVEPEQK 226


>TIGR_CMR|VC_0305 [details] [associations]
            symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 179 (68.1 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
 Identities = 57/181 (31%), Positives = 95/181 (52%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+AII+ P+RELA Q FN     +  +    ++  L  GG +   Q++ L SGVDI++GT
Sbjct:    85 PRAIIMAPTRELAIQIFNDA---EPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGT 141

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
              GR+ D       +L H +  VLDEAD +   G+   I  + +++P+   D  RL M+  
Sbjct:   142 TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE-PKD--RLNMLF- 197

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID-PQQDETWGRLRSHIQT 463
             SATL  + V+++A   M  P  V ++ E    +T H +  ++  P  +     L++ I+ 
Sbjct:   198 SATL-SYRVQELAFEHMNNPEHVVVEPEQ---KTGHRIQEELFYPSNEHKMALLQTLIEE 253

Query:   464 D 464
             +
Sbjct:   254 E 254

 Score = 103 (41.3 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A D A  G+ I  +  + N  LPDD  +YVHRIGR GRA   G +IS
Sbjct:   312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358

 Score = 103 (41.3 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56
             F + G+ P++   +E+  ++  T +QA A+P++L G D+   A+TG+GKT AF
Sbjct:    11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAF 63

 Score = 46 (21.3 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
 Identities = 21/83 (25%), Positives = 39/83 (46%)

Query:   219 QQLKNSAFYPAVVLKNAEMSFNFGATP-----FKHEP-PKDYIAVCNAPKQNVKHSESAD 272
             Q++ N     AVVL  A+  F+ G        F+  P PKD + +  +   + +  E A 
Sbjct:   151 QRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA- 209

Query:   273 VSAGPVKLVNNAPQAIIIEPSRE 295
                   + +NN P+ +++EP ++
Sbjct:   210 -----FEHMNN-PEHVVVEPEQK 226


>UNIPROTKB|Q91372 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
            "mitochondrial cloud" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
            GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
            GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
            UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
            KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
        Length = 700

 Score = 182 (69.1 bits), Expect = 4.0e-23, Sum P(3) = 4.0e-23
 Identities = 43/137 (31%), Positives = 79/137 (57%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P+AIII P+REL  Q +   +  +KF     +R +++ GG+     M  +  G +I+  T
Sbjct:   352 PEAIIIAPTRELINQIY---LDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCAT 408

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++S   + L+  R+ VLDEAD +L  G+   I+++  + P + +  KR Q ++ 
Sbjct:   409 PGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTK-PGMPTKEKR-QTLMF 466

Query:   405 SATLHDFDVKKMAERLM 421
             SAT  + +++++A   +
Sbjct:   467 SATYPE-EIRRLASNYL 482

 Score = 119 (46.9 bits), Expect = 4.0e-23, Sum P(3) = 4.0e-23
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FEE  +   + + V    ++  T VQ  +IP+I+ G D++  A+TGSGKT AF LPI+
Sbjct:   276 FEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPIL 333

 Score = 94 (38.1 bits), Expect = 4.0e-23, Sum P(3) = 4.0e-23
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             A  G+DI  +  +IN  +P +   YVHRIGR GR    G A S  +   + V
Sbjct:   586 AARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637


>ZFIN|ZDB-GENE-980526-150 [details] [associations]
            symbol:pl10 "pl10" species:7955 "Danio rerio"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
            EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
            ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
            CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
            Uniprot:Q6PBB2
        Length = 688

 Score = 177 (67.4 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
 Identities = 41/123 (33%), Positives = 71/123 (57%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q +++    +KF     +R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   299 PISLVLAPTRELALQIYDEA---RKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVAT 355

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L +C + VLDEAD +L  G+   I R+ +Q   +   G R Q ++ 
Sbjct:   356 PGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGLR-QTMMF 413

Query:   405 SAT 407
             SAT
Sbjct:   414 SAT 416

 Score = 114 (45.2 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   533 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 575

 Score = 104 (41.7 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             PT VQ  AIP+I    D++  A+TGSGKT AF LP++
Sbjct:   231 PTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVL 267


>MGI|MGI:1349406 [details] [associations]
            symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
            Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
            CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
            RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
            SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
            PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
            InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
            GermOnline:ENSMUSG00000069045 Uniprot:Q62095
        Length = 658

 Score = 174 (66.3 bits), Expect = 4.5e-23, Sum P(3) = 4.5e-23
 Identities = 41/123 (33%), Positives = 69/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG +   Q+  L  G  ++V T
Sbjct:   266 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVAT 322

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   323 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 380

Query:   405 SAT 407
             SAT
Sbjct:   381 SAT 383

 Score = 114 (45.2 bits), Expect = 4.5e-23, Sum P(3) = 4.5e-23
 Identities = 23/43 (53%), Positives = 27/43 (62%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GLA S
Sbjct:   500 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 542

 Score = 106 (42.4 bits), Expect = 4.5e-23, Sum P(3) = 4.5e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   185 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238


>ZFIN|ZDB-GENE-040426-915 [details] [associations]
            symbol:eif4a3 "eukaryotic translation initiation
            factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
            GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
            UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
            PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
            NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
        Length = 406

 Score = 170 (64.9 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
 Identities = 47/165 (28%), Positives = 84/165 (50%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA Q    ++    ++    ++    IGG NV + +  L  G  +V GTP
Sbjct:   103 QALILAPTRELAGQIQKVLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP 159

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I    L     +  VLDEAD +L +G+   I  +++ +P  T      Q+ + S
Sbjct:   160 GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVCLIS 213

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             ATL   ++ +M  + M  P  + +K ++   E +    V ++ ++
Sbjct:   214 ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE 257

 Score = 112 (44.5 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G  R  I TD V AR     G+D+S +  IIN  LP+++  Y+HRIGR GR  R G+AI+
Sbjct:   321 GASRVLISTD-VWAR-----GLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 374

Query:   515 LV 516
              V
Sbjct:   375 FV 376

 Score = 101 (40.6 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
 Identities = 19/67 (28%), Positives = 40/67 (59%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F+ MG+  ++ + +    +  P+ +Q  AI  I+ G DV+  +++G+GKT  FC+ ++Q 
Sbjct:    35 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQC 94

Query:    64 VCETLKE 70
             +   ++E
Sbjct:    95 LDIQVRE 101


>UNIPROTKB|Q9KKW0 [details] [associations]
            symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
            EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
            ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
            KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
        Length = 428

 Score = 186 (70.5 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
 Identities = 53/162 (32%), Positives = 86/162 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+++ P+RELA Q  ++++      T   +  L + GGV+  +Q + L+   +I+V T 
Sbjct:    91 QALVLVPTRELAMQV-SEVLTHVG--TALGLNTLCLCGGVDKTEQQNALAENPNILVATT 147

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL   G L L      VLDEAD LL  G+   +  +  Q     + G R Q ++CS
Sbjct:   148 GRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQ-----TAGVR-QTVMCS 200

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
             AT  D D+K  A++LM  PT V    E+++ + V   +  ++
Sbjct:   201 ATFSD-DLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN 241

 Score = 108 (43.1 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
 Identities = 24/49 (48%), Positives = 29/49 (59%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D    GI I  LP +IN  LP     YVHR+GR  RA + G+A+SLV
Sbjct:   314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 362

 Score = 88 (36.0 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             P+ +Q   IP +L G DV   A TGSGKT A+ LP+++
Sbjct:    45 PSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82


>TIGR_CMR|VC_A0990 [details] [associations]
            symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
            EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
            ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
            KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
        Length = 428

 Score = 186 (70.5 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
 Identities = 53/162 (32%), Positives = 86/162 (53%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+++ P+RELA Q  ++++      T   +  L + GGV+  +Q + L+   +I+V T 
Sbjct:    91 QALVLVPTRELAMQV-SEVLTHVG--TALGLNTLCLCGGVDKTEQQNALAENPNILVATT 147

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ DL   G L L      VLDEAD LL  G+   +  +  Q     + G R Q ++CS
Sbjct:   148 GRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQALASQ-----TAGVR-QTVMCS 200

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
             AT  D D+K  A++LM  PT V    E+++ + V   +  ++
Sbjct:   201 ATFSD-DLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVN 241

 Score = 108 (43.1 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
 Identities = 24/49 (48%), Positives = 29/49 (59%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
             A D    GI I  LP +IN  LP     YVHR+GR  RA + G+A+SLV
Sbjct:   314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 362

 Score = 88 (36.0 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             P+ +Q   IP +L G DV   A TGSGKT A+ LP+++
Sbjct:    45 PSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82


>POMBASE|SPBC543.06c [details] [associations]
            symbol:dbp8 "ATP-dependent RNA helicase Dbp8
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
            RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
            EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
            NextBio:20802183 Uniprot:Q9HGM5
        Length = 453

 Score = 156 (60.0 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
 Identities = 52/176 (29%), Positives = 90/176 (51%)

Query:   287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
             A+I+ P+RELA Q   Q   F     +  ++  LI+GG+++  Q   LS    +VV TPG
Sbjct:    78 ALILTPTRELAIQIDEQ---FAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134

Query:   347 RMEDLI-SGGH---LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             R+ DLI S G      L   +F V+DEAD LL   + + +D     +P   S+ +  Q +
Sbjct:   135 RLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP--ASEDR--QTL 190

Query:   403 VCSATLHDF--DVKKMAERLMYFPTWV-DLKGED-AVPETVHHVVVKIDPQQDETW 454
             + +AT+ D    +K   ++    P W+ +++ ++ +VP T+    + +  Q  E +
Sbjct:   191 LFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAY 246

 Score = 118 (46.6 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             GR R+      V A D A  G+DI  +  +IN  LP D  +Y+HR+GR  RA R G +IS
Sbjct:   302 GRFRAEAAKILV-ATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESIS 360

Query:   515 LVS 517
             +V+
Sbjct:   361 IVT 363

 Score = 113 (44.8 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F ++G+ P +   ++ +    PTD+Q   I  IL G + +  A+TGSGKT AF LPII+
Sbjct:     8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67


>ZFIN|ZDB-GENE-021220-2 [details] [associations]
            symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
            HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
            HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
            EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
            STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
            GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
        Length = 862

 Score = 173 (66.0 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
 Identities = 43/123 (34%), Positives = 69/123 (56%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             +A+I+ P+RELA QT     +  KF     +R  LI+GG ++ DQ + L    DI++GTP
Sbjct:   150 RALILTPTRELALQTMKFTKELGKFTG---LRTALILGGDSMDDQFAALHENPDIIIGTP 206

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+  +I   +L L    + V DEAD L + G+   +  + +++P    D +  Q ++ S
Sbjct:   207 GRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLP----DAR--QTLLFS 260

Query:   406 ATL 408
             ATL
Sbjct:   261 ATL 263

 Score = 127 (49.8 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             F+ MG+   + K + +  + +PT +Q + IP+IL G DV+  A TGSGKT AF +P+ +
Sbjct:    80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFE 138

 Score = 98 (39.6 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
 Identities = 26/56 (46%), Positives = 32/56 (57%)

Query:   470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             D A  GIDI  L  +IN   P     ++HR+GRV RA R G A SLV   P++V Y
Sbjct:   378 DVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVC--PDEVPY 431


>UNIPROTKB|I3LHW0 [details] [associations]
            symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
            Uniprot:I3LHW0
        Length = 621

 Score = 173 (66.0 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
 Identities = 56/179 (31%), Positives = 88/179 (49%)

Query:   267 HSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326
             H  S  VS G      N P  +++ P+RELA Q   +  K+        ++ + I GG N
Sbjct:   276 HLNSQPVSRGK----RNGPGMLVLTPTRELALQVGAECSKYSY----KGLKSVCIYGGGN 327

Query:   327 VKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMH 386
              K Q+  +  GVDI++ TPGR+ DL     ++L    + VLDEAD +L  G+ +      
Sbjct:   328 RKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEH------ 381

Query:   387 KQIPKITSDGKR-LQMIVCSATLHDFDVKKMA-----ERLMYFPTWVDLKGEDAVPETV 439
              QI KI  D +   Q I+ SAT  D  ++++A     E ++ +   +DL   D V + +
Sbjct:   382 -QIMKILLDVRPDRQTIMTSATWPD-TIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNI 438

 Score = 110 (43.8 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
 Identities = 21/57 (36%), Positives = 40/57 (70%)

Query:     4 FEE-MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
             FE+  G  PE+ K++++  +  PT +Q++A P++L G D++  A+TG+GKT ++ +P
Sbjct:   216 FEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMP 272

 Score = 109 (43.4 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             A D A  G+D+S +  + N   P +   YVHR+GR GRA +MG +++L++    KV
Sbjct:   516 ATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKV 571


>UNIPROTKB|F1SQ03 [details] [associations]
            symbol:LOC100524536 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
            ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
            GeneID:100524536 Uniprot:F1SQ03
        Length = 630

 Score = 173 (66.0 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
 Identities = 56/179 (31%), Positives = 88/179 (49%)

Query:   267 HSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326
             H  S  VS G      N P  +++ P+RELA Q   +  K+        ++ + I GG N
Sbjct:   285 HLNSQPVSRGK----RNGPGMLVLTPTRELALQVGAECSKYSY----KGLKSVCIYGGGN 336

Query:   327 VKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMH 386
              K Q+  +  GVDI++ TPGR+ DL     ++L    + VLDEAD +L  G+ +      
Sbjct:   337 RKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEH------ 390

Query:   387 KQIPKITSDGKR-LQMIVCSATLHDFDVKKMA-----ERLMYFPTWVDLKGEDAVPETV 439
              QI KI  D +   Q I+ SAT  D  ++++A     E ++ +   +DL   D V + +
Sbjct:   391 -QIMKILLDVRPDRQTIMTSATWPD-TIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNI 447

 Score = 110 (43.8 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
 Identities = 21/57 (36%), Positives = 40/57 (70%)

Query:     4 FEE-MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
             FE+  G  PE+ K++++  +  PT +Q++A P++L G D++  A+TG+GKT ++ +P
Sbjct:   225 FEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMP 281

 Score = 109 (43.4 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523
             A D A  G+D+S +  + N   P +   YVHR+GR GRA +MG +++L++    KV
Sbjct:   525 ATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKV 580


>TAIR|locus:2074899 [details] [associations]
            symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
            RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
            SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
            GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
            GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
            PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
            GermOnline:AT3G09620 Uniprot:Q9SF41
        Length = 989

 Score = 180 (68.4 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
 Identities = 57/184 (30%), Positives = 95/184 (51%)

Query:   277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
             PV+   + P  +++ P+REL +Q ++ I KF K +    I  + + GG  V  Q+S L  
Sbjct:   463 PVE-AGDGPIGLVMAPTRELVQQIYSDIRKFSKALG---IICVPVYGGSGVAQQISELKR 518

Query:   337 GVDIVVGTPGRMEDLI---SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKIT 393
             G +IVV TPGRM D++   SG   +L    + V+DEAD +   G+   I R+   +  I 
Sbjct:   519 GTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRI---VQNIR 575

Query:   394 SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDET 453
              D    Q ++ SAT     V+ +A +++  P  + + G   V + +  +V +I P+  E 
Sbjct:   576 PDR---QTVLFSATFPR-QVETLARKVLNKPVEIQVGGRSVVNKDITQLV-EIRPES-ER 629

Query:   454 WGRL 457
             + RL
Sbjct:   630 FSRL 633

 Score = 110 (43.8 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
 Identities = 20/59 (33%), Positives = 40/59 (67%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             + + G+  +I   ++++++  P  +QA+A+P+I+ G D +  A+TGSGKT  F LP+++
Sbjct:   398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR 456

 Score = 109 (43.4 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             A  G+D+  L  ++N   P+   +YVHR+GR GRA R G A++ +S
Sbjct:   674 AARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS 719


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 169 (64.5 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
 Identities = 57/200 (28%), Positives = 97/200 (48%)

Query:   273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
             ++A P+    + P  +++ P+RELA Q   +  KF K     +IR   + GGV    Q+ 
Sbjct:   184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK---SSRIRNTCVYGGVPRGPQIR 240

Query:   333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392
              L  GV+I + TPGR+ D++     +L    + VLDEAD +L  G+     ++ K + +I
Sbjct:   241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFE---PQIRKIVDQI 297

Query:   393 TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED-AVPETVHHVVVKIDPQQD 451
               D    Q ++ SAT    +V+++A   +     V +   D A    +  +V  +D   D
Sbjct:   298 RPDR---QTVMFSATWPK-EVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVD-NAD 352

Query:   452 ETWGRLRSHIQTDGVHARDN 471
             +   RL   I+ + +  RDN
Sbjct:   353 KR-ARLGKDIE-EVLKDRDN 370

 Score = 116 (45.9 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP- 59
             +  FEE G    + K V+++ +  PT +Q +A P+ + G D++  + TGSGKT ++CLP 
Sbjct:   121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180

Query:    60 IIQIVCETL 68
             I+ I  + L
Sbjct:   181 IVHINAQPL 189

 Score = 104 (41.7 bits), Expect = 6.8e-23, Sum P(3) = 6.8e-23
 Identities = 21/45 (46%), Positives = 26/45 (57%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLA 512
             A D A  GID+ G+  + N   P +  +YVHRIGR GRA   G A
Sbjct:   425 ATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469


>ZFIN|ZDB-GENE-040825-3 [details] [associations]
            symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
            GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
            EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
            UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
            GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
            Uniprot:Q6DRE7
        Length = 557

 Score = 148 (57.2 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
 Identities = 45/157 (28%), Positives = 83/157 (52%)

Query:   284 APQAIIIEPSRELAEQTFNQIIKFKKFIT-DPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             A +A+++ P++EL +Q    I +   + + D ++ +  I G  ++  Q  +L    DIVV
Sbjct:    79 AVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVAD--ISGKADLSAQKPILMEKPDIVV 136

Query:   343 GTPGRMEDLISGGHLSL-THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
              TP R++  I+  +L L +     V+DEAD L   G+   +  +   +PKI       Q 
Sbjct:   137 STPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKI------YQA 190

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPET 438
              + SATL+D DV+ + E +++ P  + L+G   +P++
Sbjct:   191 FLMSATLND-DVQALKELVLHNPVTLKLQGSQ-LPDS 225

 Score = 147 (56.8 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
 Identities = 32/70 (45%), Positives = 46/70 (65%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F EMG+   + KA+ ++ W  PT +Q +AIPL L G D+L  A TGSGKT A+ +P+IQ 
Sbjct:     8 FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQR 67

Query:    64 VC---ETLKE 70
             V    +T++E
Sbjct:    68 VLTSKQTVRE 77

 Score = 96 (38.9 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             GID   +  +IN   P    +Y+HR+GR  RA+  G A+S +S
Sbjct:   350 GIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFIS 392


>FB|FBgn0029979 [details] [associations]
            symbol:CG10777 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
            GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
            RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
            MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
            KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
            InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
            NextBio:774939 Uniprot:Q9W3M7
        Length = 945

 Score = 178 (67.7 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
 Identities = 37/113 (32%), Positives = 63/113 (55%)

Query:   277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
             P  +    P A+++ P+RELA+Q    +++    +  P+IR   I GG +   Q   L  
Sbjct:   303 PPIIRGEGPIALVLAPTRELAQQ-IQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDR 361

Query:   337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQI 389
             GV++++ TPGR+ D +   + +L  C + VLDEAD +L  G+   I ++ +QI
Sbjct:   362 GVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 414

 Score = 117 (46.2 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
 Identities = 38/135 (28%), Positives = 69/135 (51%)

Query:   387 KQIPKITSDGKRLQMIVCSATLHDFD-VKKMAERLMYFPTWVD--LKGEDAVP----ETV 439
             +QI +I ++ ++ Q +VC   L++   +K           +V+  +K ED +     E  
Sbjct:   459 RQIVEICTEIEKPQRLVC--LLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGY 516

Query:   440 HHVVVKIDPQQDETWGRLRS--HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYV 497
             +   +  D  Q+E    L+   + +++ + A D A  G+D+  L ++IN   P+   NYV
Sbjct:   517 NATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYV 576

Query:   498 HRIGRVGRAERMGLA 512
             HRIGR GR +++G A
Sbjct:   577 HRIGRTGRCQQLGTA 591

 Score = 103 (41.3 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query:     1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
             + +FEE  +   + + ++   +  PT +Q++  P+ L G D++  A+TGSGKT A+ LP 
Sbjct:   236 VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPA 295

Query:    61 I 61
             I
Sbjct:   296 I 296


>TAIR|locus:2088237 [details] [associations]
            symbol:EIF4A1 "eukaryotic translation initiation factor
            4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003743 "translation initiation factor
            activity" evidence=ISS] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
            "response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
            GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
            IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
            UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
            EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
            Uniprot:F4JEL4
        Length = 415

 Score = 183 (69.5 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
 Identities = 47/166 (28%), Positives = 92/166 (55%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPK-IRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             QA+++ P+RELA+Q    I K  + + D   ++    +GG +V++   +L +GV +VVGT
Sbjct:   109 QALVLAPTRELAQQ----IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 164

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++    L   + + FVLDEAD +L +G+ + I  + + +P       ++Q+ V 
Sbjct:   165 PGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP------KIQVGVF 218

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             SAT+   +  ++  + M  P  + +K ++   E +    V ++ ++
Sbjct:   219 SATMPP-EALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEE 263

 Score = 113 (44.8 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEW 529
             GID+  +  +IN  LP    NY+HRIGR GR  R G+AI+ V+   E++     W
Sbjct:   341 GIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLCLRTW 395

 Score = 84 (34.6 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F+ MG+   + + +    +  P+ +Q   I     G DV+  A++G+GKT  FC  ++Q
Sbjct:    40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99


>UNIPROTKB|I3LDV0 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
            Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
        Length = 667

 Score = 177 (67.4 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
 Identities = 41/123 (33%), Positives = 70/123 (56%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P ++++ P+RELA Q + +    +KF    ++R  ++ GG ++  Q+  L  G  ++V T
Sbjct:   268 PISLVLAPTRELAVQIYEEA---RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 324

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++  G + L  C++ VLDEAD +L  G+   I R+ +Q   +   G R  M+  
Sbjct:   325 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-DTMPPKGVRHTMMF- 382

Query:   405 SAT 407
             SAT
Sbjct:   383 SAT 385

 Score = 108 (43.1 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
 Identities = 23/47 (48%), Positives = 29/47 (61%)

Query:   472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
             A  G+DIS +  +IN  LP D   YVHRIGR GR   +GL I L ++
Sbjct:   502 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL-IGLATS 547

 Score = 106 (42.4 bits), Expect = 9.2e-23, Sum P(3) = 9.2e-23
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query:     6 EMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             EMG +  +G  +E   +  PT VQ  AIP+I    D++  A+TGSGKT AF LPI+
Sbjct:   187 EMGEII-MGN-IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 240


>UNIPROTKB|F1NQV5 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
            Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
        Length = 758

 Score = 152 (58.6 bits), Expect = 9.5e-23, Sum P(3) = 9.5e-23
 Identities = 45/167 (26%), Positives = 87/167 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             + +++ P+REL  Q  +   +  +F +   +   L +GG++VK Q + L SG DI++ TP
Sbjct:   253 RVLVLVPTRELGIQVHSVTKQLAQFSS---VTTCLAVGGLDVKTQEAALRSGPDILIATP 309

Query:   346 GRMED-LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             GR+ D L +     L+     +LDEAD +L + +    +   K+I ++ S  +  Q ++ 
Sbjct:   310 GRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYF----EEQMKEIIRLCS--RHRQTMLF 363

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD 451
             SAT+ + +VK +A   +  PT + +     V   +    ++I P ++
Sbjct:   364 SATMTE-EVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNRE 409

 Score = 131 (51.2 bits), Expect = 9.5e-23, Sum P(3) = 9.5e-23
 Identities = 30/75 (40%), Positives = 43/75 (57%)

Query:   449 QQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508
             Q+ E   R +   Q D + A D A  G+DI G+  +IN T+P+   +YVHR+GR  RA R
Sbjct:   463 QRLEALRRFKDE-QIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGR 521

Query:   509 MGLAISLVSTVPEKV 523
              G ++SLV     K+
Sbjct:   522 AGRSVSLVGEEERKM 536

 Score = 112 (44.5 bits), Expect = 9.5e-23, Sum P(3) = 9.5e-23
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query:     3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
             +F++M +   + KA+  + +  PT +Q   IP+ L G D+   A TG+GKT AF LP+++
Sbjct:   181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLE 240


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 180 (68.4 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
 Identities = 48/139 (34%), Positives = 76/139 (54%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             + P A+++ P+RELA+Q     I+F    ++  +R   I GG     Q   L  GV+IV+
Sbjct:   229 DGPIALVLAPTRELAQQIQQVAIEFG---SNTHVRNTCIFGGAPKGQQARDLERGVEIVI 285

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
              TPGR+ D +  G  SL  C + VLDEAD +L  G+   I ++ +QI     D    Q++
Sbjct:   286 ATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI---RPDR---QVL 339

Query:   403 VCSATLHDFDVKKMAERLM 421
             + SAT    +V+++AE  +
Sbjct:   340 MWSATWPK-EVRQLAEEFL 357

 Score = 110 (43.8 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query:   468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
             A D A  G+D+  + F+IN   P +  +YVHRIGR GR+   G A +L
Sbjct:   460 ATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTL 507

 Score = 104 (41.7 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FEE G    +   + +  +  PT +QA+  P+ + G D++  A+TGSGKT A+ LP +
Sbjct:   159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216


>UNIPROTKB|G3X7G8 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
            RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
            GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
        Length = 620

 Score = 164 (62.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 46/167 (27%), Positives = 88/167 (52%)

Query:   282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
             + +P  +++ P+RELA Q   Q  +    +  P +R  L++GG+    Q   L   + ++
Sbjct:   270 SKSPSGLVLTPTRELAIQIERQAKELMSGL--PCLRTALLVGGLPAPPQRHRLRQRIQVI 327

Query:   342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
             + TPGR+ D+I    + L   +  V+DEAD +LK G+   +  + +Q+P    D    Q 
Sbjct:   328 IATPGRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPH---D---CQT 381

Query:   402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP-ETVHHVVVKID 447
             ++ SAT+    V+++A +L+  P  +   GE  +P  +V  +V+ ++
Sbjct:   382 VLASATI-PASVEQLACQLLRDPVAITA-GERNLPCPSVRQIVLWVE 426

 Score = 120 (47.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             FE  G    + + ++   + +PT +Q + IP+ L G DVL +A+TGSGKT AF LP+I
Sbjct:   206 FEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI 263

 Score = 106 (42.4 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 31/109 (28%), Positives = 54/109 (49%)

Query:   426 WVDLK-GEDAVPETVHHVV------VKIDPQQDETWGRLRSHIQTDG--VHARDNARPGI 476
             +VD K G D + E V  +       V  D  Q E    L+  ++ D   V +      G+
Sbjct:   451 FVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGL 510

Query:   477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWY 525
             D+ G+  ++N  +P     YVH+IGRVGR  + G AI+ ++   +++++
Sbjct:   511 DLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFW 559


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 183 (69.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 50/149 (33%), Positives = 79/149 (53%)

Query:   285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
             P  +++ P+RELA Q   + +KF K     KI    + GG     Q+  +  GVDIVV T
Sbjct:   302 PTILVLSPTRELATQIQVEALKFGK---SSKISCACLYGGAPKGPQLKEIERGVDIVVAT 358

Query:   345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
             PGR+ D++    +SL    + VLDEAD +L  G+   I ++  ++P      KR Q ++ 
Sbjct:   359 PGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPT-----KR-QTLMY 412

Query:   405 SATLHDFDVKKMAERLMYFPTWVDLKGED 433
             +AT    +V+K+A  L+  P  V++   D
Sbjct:   413 TATWPK-EVRKIAADLLVNPAQVNIGNVD 440

 Score = 111 (44.1 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query:   445 KIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504
             K   ++D+   + RS  +T  + A D A  G+D+  +  ++N   P+   +YVHRIGR G
Sbjct:   507 KSQAERDDVLNQFRSG-RTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTG 565

Query:   505 RAERMGLA 512
             RA   GLA
Sbjct:   566 RAGATGLA 573

 Score = 97 (39.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query:     2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
             A F    VLP  G+ V    +  P+ +QA++ P+ +   D++  A+TGSGKT  + +P
Sbjct:   229 AGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIP 286


>WB|WBGene00022029 [details] [associations]
            symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0018996 "molting cycle, collagen and
            cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
            GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
            GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
            RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
            STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
            KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
            InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
        Length = 399

 Score = 169 (64.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 46/165 (27%), Positives = 86/165 (52%)

Query:   286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTP 345
             QA+I+ P+RELA Q    ++    ++    ++    IGG N+ + +  L  G  +V GTP
Sbjct:    96 QALILSPTRELAVQIQKVVLALGDYMN---VQCHACIGGTNLGEDIRKLDYGQHVVSGTP 152

Query:   346 GRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
             GR+ D+I   +L     +  VLDEAD +L +G+   +  +++ +P     G   Q+++ S
Sbjct:   153 GRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPP----GA--QVVLLS 206

Query:   406 ATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
             ATL   ++ +M  + M  P  + +K ++   E +    V +D ++
Sbjct:   207 ATL-PHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREE 250

 Score = 107 (42.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query:   455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
             G  R  I TD V AR     G+D+  +  +IN  LP+++  Y+HRIGR GR  R G+AI+
Sbjct:   314 GTTRVLISTD-VWAR-----GLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 367

Query:   515 LV 516
              V
Sbjct:   368 FV 369

 Score = 103 (41.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 20/67 (29%), Positives = 40/67 (59%)

Query:     4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
             F++MG+  ++ + +    +  P+ +Q  AIP IL   DV+  A++G+GKT  F + ++Q 
Sbjct:    28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 87

Query:    64 VCETLKE 70
             +   ++E
Sbjct:    88 LDTQVRE 94


>ZFIN|ZDB-GENE-050208-665 [details] [associations]
            symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
            IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
            Uniprot:F1R8P9
        Length = 584

 Score = 191 (72.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 48/165 (29%), Positives = 91/165 (55%)

Query:   283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
             + P  +I+ P+RELA Q   Q  +  + +  P +R  L++GG+ +  Q+  L   + IV+
Sbjct:   241 SCPACLILTPTRELAIQIEEQAKELMRGL--PNMRTALLVGGMPLPPQLHRLKHNIKIVI 298

Query:   343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
             GTPGR+ +++    + L H R  V+DEAD +LK G+   +  + +Q+P+   D    Q +
Sbjct:   299 GTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPE---DH---QTL 352

Query:   403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID 447
             + SAT+     +++AERL + P  + +  ++     V  +V+ ++
Sbjct:   353 LTSATIPT-GTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVE 396

 Score = 104 (41.7 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query:    25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
             PT VQ + +P+ L G DV+  A+TGSGKT AF LP++
Sbjct:   193 PTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVV 229

 Score = 91 (37.1 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query:   475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
             G+D+  +  +IN  +P +   YVH+IGR GR    G AI+ ++
Sbjct:   479 GLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMN 521

WARNING:  HSPs involving 648 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      651       623   0.00090  120 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  898
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  360 KB (2179 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  49.50u 0.09s 49.59t   Elapsed:  00:00:16
  Total cpu time:  49.56u 0.09s 49.65t   Elapsed:  00:00:18
  Start:  Thu Aug 15 11:40:07 2013   End:  Thu Aug 15 11:40:25 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
