RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8712
(651 letters)
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 102 bits (254), Expect = 3e-25
Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 28/187 (14%)
Query: 89 WILSVWDRDTAMAITPEGLRCQSRE--QKEWHGCRANKGVYGRGKYYYEATVTDEGL--- 143
+ DR + + + R + R G+ +G + +E
Sbjct: 24 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGL-TKGLHIWEIYWPTRQRGTH 82
Query: 144 CRVGWSTSQAVRD-------LGTDRFG----------FGFGGTGKKSNNKQFDNYGEAFG 186
VG T+ A +G+ + EAF
Sbjct: 83 AVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFL 142
Query: 187 MHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFNFGAT 244
+ D LD+D T++F + Q+LG+AF + L+ YP V V + E++ +
Sbjct: 143 VPDKFLVALDMDEGTLSFIVDQQYLGIAF---RGLRGKKLYPIVSAVWGHCEITMRYIGG 199
Query: 245 PFKHEPP 251
P
Sbjct: 200 LDPEPLP 206
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 100 bits (250), Expect = 7e-25
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 299 QTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS 358
+ + + ++ I GG + Q+ L +IVVGTPGR+ D I+ G L+
Sbjct: 84 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLN 142
Query: 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418
L + ++F+LDEAD +L G+ ++++ K ++++ SAT+ ++ +A+
Sbjct: 143 LKNVKYFILDEADEMLNMGFIKDVEKILNACN------KDKRILLFSATMPR-EILNLAK 195
Query: 419 RLMYFPTWVDLK 430
+ M +++ K
Sbjct: 196 KYMGDYSFIKAK 207
Score = 53.1 bits (127), Expect = 1e-08
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGG-DVLMAAETGSGKTGAFCLPIIQ 62
F E+ + I A+ + PTD+Q + IPL L +++ A TGSGKT +F +P+I+
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 63 IVC 65
+V
Sbjct: 66 LVN 68
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 96.5 bits (239), Expect = 2e-23
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 26/176 (14%)
Query: 89 WILSVWDRDTAMAITPEGLRCQSRE-QKEWHGCRANKGVYGRGKYYYEATVTDEG---LC 144
+ D + + GL + R + G R +G RG + +E + E
Sbjct: 35 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGY-SRGLHAWEISWPLEQRGTHA 93
Query: 145 RVGWSTSQAVRDLGTDRFGFGFGGTG----------------KKSNNKQFDNYGEAFGMH 188
VG +T+ A G ++ GE +
Sbjct: 94 VVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVP 153
Query: 189 DVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFNFG 242
+ + +LD++ T+ ++ G +LG AF + LK YP+V V ++ +
Sbjct: 154 ERLLVVLDMEEGTLGYSIGGTYLGPAF---RGLKGRTLYPSVSAVWGQCQVRIRYM 206
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 73.4 bits (179), Expect = 2e-15
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 258 CNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR 317
C A K + + ++ V +++ +RELA Q + +F K++ P ++
Sbjct: 43 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYM--PNVK 100
Query: 318 ELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL-K 375
+ GG+++K VL IVVGTPGR+ L L+L H + F+LDE D +L +
Sbjct: 101 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 160
Query: 376 QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
+ + + P Q+++ SATL +++ + + M P +
Sbjct: 161 LDMRRDVQEIFRMTP------HEKQVMMFSATLSK-EIRPVCRKFMQDPMEI 205
Score = 61.8 bits (149), Expect = 2e-11
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
F + + PE+ +A+ + + P++VQ E IP + G DVL A++G GKT F L +Q
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 63 IVCETLKEIQA 73
+ ++
Sbjct: 62 QLEPVTGQVSV 72
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 71.0 bits (173), Expect = 1e-14
Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 9/173 (5%)
Query: 258 CNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR 317
A K + A ++L A QA+++ P+RELA+Q ++ ++
Sbjct: 54 AQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA 113
Query: 318 ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG 377
I G + + I+VGTPGR+ D+++ +LS + + FVLDEAD +L +G
Sbjct: 114 C--IGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 171
Query: 378 YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430
+ + I + +++ Q+++ SAT+ DV ++ ++ M P + +K
Sbjct: 172 FKDQIYDIFQKLN------SNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVK 217
Score = 59.1 bits (142), Expect = 1e-10
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ +F++M + + + + + P+ +Q AI + G DV+ A++G+GKT F + I
Sbjct: 11 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 70
Query: 61 IQIVCETLKEIQA 73
+Q + LK QA
Sbjct: 71 LQQIELDLKATQA 83
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 70.6 bits (172), Expect = 2e-14
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 258 CNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR 317
+ K + + + + QA+I+ P+RELA Q ++ + ++
Sbjct: 59 AQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY---MNVQ 115
Query: 318 ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG 377
IGG NV + + L G +V GTPGR+ D+I L + VLDEAD +L +G
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
Query: 378 YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430
+ I +++ +P Q+++ SATL ++ +M + M P + +K
Sbjct: 176 FKEQIYDVYRYLPP------ATQVVLISATLPH-EILEMTNKFMTDPIRILVK 221
Score = 60.6 bits (146), Expect = 6e-11
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F+ MG+ ++ + + + P+ +Q AI I+ G DV+ +++G+GKT F + ++Q
Sbjct: 19 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 78
Query: 64 VCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAIT 103
+ ++E Q A +++PT L+V + +A+
Sbjct: 79 LDIQVRETQ---------ALILAPTRELAVQIQKGLLALG 109
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 69.2 bits (168), Expect = 8e-14
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
P+ +I+ P+RELA Q ++ KF +R ++ GG + Q+ + G ++V T
Sbjct: 99 PKCLILAPTRELAIQILSESQKFSLNT---PLRSCVVYGGADTHSQIREVQMGCHLLVAT 155
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
PGR+ D I +SL C++ VLDEAD +L G+ I ++ ++ + G Q ++
Sbjct: 156 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--GINRQTLMF 213
Query: 405 SATLHDFDVKKMAERLMYFPTWV 427
SAT +++K+A +Y ++
Sbjct: 214 SATFPK-EIQKLAADFLYNYIFM 235
Score = 65.7 bits (159), Expect = 1e-12
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F+E+ + P I + + PT +Q AIP IL D++ A+TGSGKT AF +PI
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 79
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPTWIL 91
I + Q K +++PT L
Sbjct: 80 INHLVCQDLNQQRYSKTAYPKCLILAPTREL 110
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 68.7 bits (167), Expect = 9e-14
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
APQA+++ P+RELA Q ++ + + V + + IV
Sbjct: 76 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----DAQIV 131
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ D I + F+LDEAD +L G+ I ++ +P Q+
Sbjct: 132 VGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------PTTQV 185
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWV 427
++ SAT+ + DV ++ + M P +
Sbjct: 186 VLLSATMPN-DVLEVTTKFMRNPVRI 210
Score = 62.5 bits (151), Expect = 1e-11
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F++M + + + V + P+ +Q AI I+ G DVL A++G+GKTG F + +Q
Sbjct: 12 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 71
Query: 64 VCETLKEIQAGKGQGKAKAQVISPTWI 90
+ ++K QA +++PT
Sbjct: 72 IDTSVKAPQAL---------MLAPTRE 89
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 60.7 bits (146), Expect = 4e-11
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
FE+ + E+ + EM W P+ +Q E+IP+ L G D+L A+ G+GK+GA+ +P+++
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Score = 58.4 bits (140), Expect = 3e-10
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 257 VCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKI 316
+ A K + L + QA++I P+RELA Q I+ K + K+
Sbjct: 44 LARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103
Query: 317 RELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ 376
GG N++D + L V +V+ TPGR+ DLI G + H + VLDEAD LL Q
Sbjct: 104 MA--TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161
Query: 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVD 428
+ +++ + +P K Q+++ SAT V+K + P ++
Sbjct: 162 DFVQIMEDIILTLP------KNRQILLYSATFPL-SVQKFMNSHLEKPYEIN 206
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 59.2 bits (142), Expect = 1e-10
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
FE+ + E+ + E + P+ +Q EAIP+ + G D+L A+ G+GKT AF +P ++
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 64 VCETLKEIQA 73
V L +IQA
Sbjct: 63 VKPKLNKIQA 72
Score = 54.2 bits (129), Expect = 6e-09
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 307 FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFV 366
+ I ++ GG N++D + L+ V I+VGTPGR+ DL S L+ C F+
Sbjct: 89 VRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 148
Query: 367 LDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW 426
+DEAD +L + + +I+++ +P Q ++ SAT VK+ + ++ P
Sbjct: 149 MDEADKMLSRDFKTIIEQILSFLP------PTHQSLLFSATFPL-TVKEFMVKHLHKPYE 201
Query: 427 VDL 429
++L
Sbjct: 202 INL 204
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 58.4 bits (140), Expect = 4e-10
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F E +L E + + P +Q IL A TG GKT
Sbjct: 21 LCLFPEDFLLKEFVEFFRKCVGE-PRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS 79
Query: 61 IQIVCETLKEI 71
+ + + +
Sbjct: 80 LFLALKGKRCY 90
Score = 56.4 bits (135), Expect = 2e-09
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 12/153 (7%)
Query: 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFI---TDPKIRELLIIGGVNVKDQMSVLS 335
L + +I P+ L Q I K+ + T+ I K+
Sbjct: 81 FLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNL 140
Query: 336 SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYG-----NLIDRMHKQIP 390
IV+ T + L H F +D+ D +LK +L+ +
Sbjct: 141 RNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT 196
Query: 391 KITSDGKRLQMIVCSATLHDFDVKKMAERLMYF 423
K R ++V +AT ++ +L+ F
Sbjct: 197 KSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 57.4 bits (137), Expect = 5e-10
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F P I +A++ + + PT++Q IP L G ++ ++TG+GKT A+ LPI++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 64 VCE 66
+
Sbjct: 63 IKP 65
Score = 43.1 bits (100), Expect = 3e-05
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNL 381
IGG + + + L+ IV+GTPGR+ D I L + V+DEAD +L G+
Sbjct: 108 IGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITD 167
Query: 382 IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
+D++ ++PK LQM+V SAT+ + +K ++ M PT+V
Sbjct: 168 VDQIAARMPK------DLQMLVFSATIPE-KLKPFLKKYMENPTFV 206
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 58.4 bits (140), Expect = 8e-10
Identities = 31/287 (10%), Positives = 67/287 (23%), Gaps = 69/287 (24%)
Query: 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV 338
+ + + +I+ P+R +A + + P IR + +
Sbjct: 33 EAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIR--------------AEHTGRE 78
Query: 339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
+ + + + + + ++DEA +
Sbjct: 79 IVDLMCHATFTMRLL-SPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM------GE 131
Query: 399 LQMIVCSATLHDFDVK------KMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD- 451
I +AT + + P G + V + V + +
Sbjct: 132 AAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAG 191
Query: 452 -ETWGRLRS---------------------HIQTDGVHARDNARPGIDI-------SGLP 482
+ LR D V D + G +
Sbjct: 192 NDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRC 251
Query: 483 ------------FIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
I+ +P ++ R GRVGR + +
Sbjct: 252 MKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYM 298
Score = 39.1 bits (90), Expect = 0.001
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 35 LILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWIL 91
+ +M G+GKT + I ++ +G + +++PT ++
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAI----------VREAIKRGL-RTLILAPTRVV 50
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 51.5 bits (122), Expect = 4e-08
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 4 FEEM--GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
EE+ + ++E QAEA+ + G ++L+A T +GKT + ++
Sbjct: 3 VEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 62 QIVC 65
+
Sbjct: 63 REAI 66
Score = 40.0 bits (92), Expect = 4e-04
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
+++ + P R LA + + K++K I DI+V T
Sbjct: 69 GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDC-------DIIVTT 121
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
+ + LI + V+DE L + G ++ + ++ ++ K L++I
Sbjct: 122 SEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---NKALRVIGL 178
Query: 405 SATLHDFDVKKMAERL 420
SAT +V ++AE L
Sbjct: 179 SATAP--NVTEIAEWL 192
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 51.5 bits (123), Expect = 1e-07
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 433 DAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDD 492
+P + VVV D G S I + + I TLP D
Sbjct: 73 SVIPTSGDVVVVATDALMTGFTGDFDSVIDCN-TCVT--QTVDFSLDPTFTIETTTLPQD 129
Query: 493 KANYVHRIGRVGR 505
+ R GR GR
Sbjct: 130 AVSRTQRRGRTGR 142
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 50.0 bits (118), Expect = 2e-07
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 1 MAAFEEMGVLPEIGKAVEEMD-WLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
MA E + + + ++E + Q E I +L G D L+ TG GK+ + +P
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 60 IIQIVCETL 68
+ + T+
Sbjct: 61 ALLLNGLTV 69
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 49.9 bits (118), Expect = 4e-07
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526
G+D+ + ++ + R GR GR G I L++ Y+
Sbjct: 232 GLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAYY 282
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 41.4 bits (96), Expect = 1e-04
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521
GID+ + M+ Y+ R+GR+ R + L +
Sbjct: 151 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 41.1 bits (95), Expect = 1e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
D G+D+ + IIN LP+++ Y+HRIGR GR R G+AI+ V
Sbjct: 92 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 139
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 40.3 bits (93), Expect = 2e-04
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 439 VHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH 498
V + + Q+ +T + + + + D GID+ + +IN LP +K NY+H
Sbjct: 54 VSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 113
Query: 499 RIGRVGRAERMGLAISLVS 517
RIGR GR R G+AI+ V+
Sbjct: 114 RIGRGGRFGRKGVAINFVT 132
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 39.2 bits (90), Expect = 4e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 476 IDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
ID++ L +IN LP + +Y+HRIGR GRA + G AIS+++
Sbjct: 92 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 133
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 37.8 bits (87), Expect = 0.001
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 482 PFIINMTLPDDKANYVHRIGRVGRAER 508
+ P D + R GR GR +
Sbjct: 101 DCNTSDGKPQDAVSRTQRRGRTGRGKP 127
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 36.9 bits (84), Expect = 0.003
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 10/146 (6%)
Query: 374 LKQGYGNLIDRMHK--QIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431
++Q Y R K + I Q I+ T ++ A+ L +
Sbjct: 6 IRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQT------RRNAKWLTVEMIQDGHQV 59
Query: 432 EDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPD 491
E I + + G+ + I T+ + + + +
Sbjct: 60 SLLSGELTVEQRASIIQRFRD--GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEP 117
Query: 492 DKANYVHRIGRVGRAERMGLAISLVS 517
D Y+HRIGR GR + GLA +++
Sbjct: 118 DYETYLHRIGRTGRFGKKGLAFNMIE 143
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 36.7 bits (83), Expect = 0.004
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 21 DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
D + P Q + L+ TG GKT + + +
Sbjct: 6 DLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK 50
Score = 32.8 bits (73), Expect = 0.090
Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV 338
+L + +++ P++ L Q F++ P + + + G + +++ +
Sbjct: 47 RLTKYGGKVLMLAPTKPLVLQHAES---FRRLFNLPPEKIVALTGEKSPEERSKAWARAK 103
Query: 339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
IV TP +E+ + G +SL V DEA + I R +K+ K
Sbjct: 104 VIVA-TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------KN 156
Query: 399 LQMIVCSATLHDF--DVKKMAERLMYFPTWVDLKGED 433
+I +A+ + ++ L ++ + E+
Sbjct: 157 PLVIGLTASPGSTPEKIMEVINNLG--IEHIEYRSEN 191
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 35.5 bits (81), Expect = 0.013
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 467 HARDNARPGIDIS-GLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
H G+D+ + F + + P ++ I + + +
Sbjct: 78 HYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYL 125
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 34.5 bits (78), Expect = 0.030
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRM-HKQIPKITSDGKRLQMIVCSATLHDFDVK 414
H+ D D + + +K + + ++T+ + ++
Sbjct: 118 HIVHKKLTSSKEDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSISKPHSTSTVRESSLQ 177
Query: 415 KMAERLMYFPTWVDLKGEDAVP---ETVHHVV----VKIDPQQDETWGRLRSHIQTDGVH 467
M T+ G P ETV V +KI Q + + + + ++
Sbjct: 178 DMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFLEFSKNLYYDEDQKLN 237
Query: 468 ARDNARP 474
+DN RP
Sbjct: 238 MKDNVRP 244
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.3 bits (72), Expect = 0.061
Identities = 12/93 (12%), Positives = 23/93 (24%)
Query: 35 LILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVW 94
++ G ++ G+GKT F I+ +++ L V
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 95 DRDTAMAITPEGLRCQSREQKEWHGCRANKGVY 127
A + G R +
Sbjct: 63 FHTQAFSAHGSGREVIDAMCHATLTYRMLEPTR 95
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 32.7 bits (73), Expect = 0.068
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 562 NGCCIWF----DEKRMLGEIEEHLNVTIQQVDDKLEI 594
G I F ++ ++L ++++ V I ++ D+++I
Sbjct: 124 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI 160
Score = 28.1 bits (61), Expect = 2.4
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 440 HHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHR 499
+ + ++ + + Q + A + G+DI + N +P+D Y+HR
Sbjct: 55 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 114
Query: 500 IGRVGRAERMGLAISLVS 517
+ R GR GLAI+ VS
Sbjct: 115 VARAGRFGTKGLAITFVS 132
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 32.6 bits (73), Expect = 0.11
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 6/94 (6%)
Query: 438 TVHHVVVKIDPQQDETWGR--LRSHIQTDGVHARDNARPGIDI--SGLPFIINMTLPDDK 493
H ++ + E R + A P + L +
Sbjct: 99 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKV 158
Query: 494 ANYVHRIGRVGRAER--MGLAISLVSTVPEKVWY 525
+ Y GR GR G AI +V ++
Sbjct: 159 SEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 192
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 31.0 bits (69), Expect = 0.42
Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 367 LDEADGLLKQGYGNLIDRM-HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT 425
D D + + ++ + + S T+ + + + +
Sbjct: 135 QDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIPKPEMSTTMAESSLLDLLPKEEKLRH 194
Query: 426 WVDLKGEDAVP---ETVHHVV----VKIDPQQDETWGRLRSHIQTDGVHARDNARP 474
+ G P E V V +++ +Q + + + + V +DN RP
Sbjct: 195 YFRYLGSLTTPTCDEKVVWTVFREPIQLHREQILAFSQKLYYDKEQTVSMKDNVRP 250
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 29.8 bits (66), Expect = 0.79
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCET 67
D Q +A+ L + TGSGKT I ++ T
Sbjct: 71 LRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT 113
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 29.2 bits (64), Expect = 1.0
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 469 RDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
D GIDI + +IN P Y+HRIGR GR +GLAI+L++
Sbjct: 89 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 137
>d1kq1a_ b.38.1.2 (A:) Pleiotropic translational regulator Hfq
{Staphylococcus aureus [TaxId: 1280]}
Length = 60
Score = 26.8 bits (60), Expect = 1.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 546 KGNSQVPIFLLSGTMVNGCCIWFD 569
++V +F L+G + G +D
Sbjct: 12 ANQTEVTVFFLNGFQMKGVIEEYD 35
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 66
Score = 27.3 bits (61), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 546 KGNSQVPIFLLSGTMVNGCCIWFDEKRML 574
K V I+L++G + G FD+ +L
Sbjct: 12 KERVPVSIYLVNGIKLQGQIESFDQFVIL 40
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 190
Score = 28.6 bits (64), Expect = 1.6
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 408 LHDFDVKKMAERLMYFPTWVDLKGEDAVPETV 439
H + K A +L+ +P + + E +
Sbjct: 34 SHWKERKTCAAQLVSYPGKNKIPLNYHIVEVI 65
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 28.2 bits (62), Expect = 2.0
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHR--IGRVGRAERMGLAISLVSTVPEKVWYHGEWCAT 532
G+DI + + + + R I +GRA R ++ T
Sbjct: 94 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQET 153
Query: 533 RGR 535
+ R
Sbjct: 154 KRR 156
>d1onca_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Frog (Rana
pipiens), P-30 [TaxId: 8404]}
Length = 104
Score = 26.7 bits (59), Expect = 3.5
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 246 FKHEPPKDYIAVCNAPKQNVKH 267
F + P+ A+C +
Sbjct: 36 FIYSRPEPVKAICKGIIASKNV 57
>d1uuha_ d.169.1.4 (A:) CD44, hyaluronan binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 150
Score = 27.2 bits (60), Expect = 4.5
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 120 CRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRFGFGFGGTG---KKSNNK 176
C+A +A CR G+ V TG SN
Sbjct: 34 CKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTS 93
Query: 177 QFDNY 181
Q+D Y
Sbjct: 94 QYDTY 98
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 26.9 bits (59), Expect = 5.6
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 9/134 (6%)
Query: 86 SPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCR 145
+ I+S D + + R + E+ + C + G++Y+E V +
Sbjct: 20 NNYLIIS-EDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWD 78
Query: 146 VGWSTSQAVRD-LGTDRFGFGFGGTGKKSNNKQFDNYGE-----AFGMHDVIGCLLDLDN 199
VG R GF G + + +G LD+
Sbjct: 79 VGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGM 138
Query: 200 MTVAF--TKNGQHL 211
++AF +G H+
Sbjct: 139 RSIAFYNVSDGCHI 152
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta,
aIF2beta, N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 98
Score = 25.9 bits (57), Expect = 5.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 378 YGNLIDRMHKQIPKITSDGKRLQM 401
Y L++R Q+P + KR ++
Sbjct: 4 YEKLLERAIDQLPPEVFETKRFEV 27
>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana) [TaxId: 8400]}
Length = 111
Score = 25.9 bits (57), Expect = 7.9
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 246 FKHEPPKDYIAVCNAPKQNVKHSES 270
F A+C S +
Sbjct: 40 FIISSATTVKAICTGVINMNVLSTT 64
>d1m58a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana), RNase2 [TaxId: 8400]}
Length = 106
Score = 25.6 bits (56), Expect = 8.5
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 246 FKHEPPKDYIAVCNAPKQNVKH 267
F + P A+C +
Sbjct: 37 FIYARPGRVQALCKNIIVSKNV 58
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 160
Score = 26.3 bits (57), Expect = 8.8
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 408 LHDFDVKKMAERLM---YFPTWVDLKGEDAVPETVHHVVVKIDPQQDETW--GRLRS 459
+ + + + Y + D V V+I ++ +W +L
Sbjct: 94 VEEPEALHRVGVSVWERYTGPYTDECKPMVDQMMNKRVGVRIVARRTRSWDHRKLGL 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,501,756
Number of extensions: 121135
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 63
Length of query: 651
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 560
Effective length of database: 1,158,166
Effective search space: 648572960
Effective search space used: 648572960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)