BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8713
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 99/193 (51%), Positives = 121/193 (62%), Gaps = 40/193 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D +FG SYSV++NE
Sbjct: 99 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 158 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ SG+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 189 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 294 ECGIESSITAGVP 306
CGIES I AG+P
Sbjct: 239 HCGIESEIVAGMP 251
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 28/30 (93%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
LP +FD+R +WPNCPTI+EIRDQGSCGSCW
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCW 30
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 18 PGMAWRYWVKSGIVSGGAYGS 38
P AW +W K G+VSGG Y S
Sbjct: 76 PSGAWNFWTKKGLVSGGLYNS 96
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D ++G SYSVS++E
Sbjct: 162 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 220
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 221 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 251
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ +G+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 252 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 301
Query: 294 ECGIESSITAGVPKLD 309
CGIES + AG+P+ D
Sbjct: 302 HCGIESEVVAGIPRTD 317
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
+CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 129 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 159
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D ++G SYSVS++E
Sbjct: 99 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 158 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ +G+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 189 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 294 ECGIESSITAGVPKLD 309
CGIES + AG+P+ D
Sbjct: 239 HCGIESEVVAGIPRTD 254
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
+CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 66 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 96
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D ++G SYSVS++E
Sbjct: 50 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 108
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 109 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 139
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ +G+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 140 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 189
Query: 294 ECGIESSITAGVPKLD 309
CGIES + AG+P+ D
Sbjct: 190 HCGIESEVVAGIPRTD 205
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
+CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 17 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 47
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D ++G SYSVS++E
Sbjct: 101 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 159
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 160 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 190
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ +G+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 191 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 240
Query: 294 ECGIESSITAGVPKLD 309
CGIES + AG+P+ D
Sbjct: 241 HCGIESEVVAGIPRTD 256
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
+CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 68 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 98
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D ++G SYSVS++E
Sbjct: 100 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 158
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 159 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 189
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ +G+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 190 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 239
Query: 294 ECGIESSITAGVPKLD 309
CGIES + AG+P+ D
Sbjct: 240 HCGIESEVVAGIPRTD 255
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
+CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 67 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 97
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 120/193 (62%), Gaps = 40/193 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D +FG SYSV++NE
Sbjct: 99 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 158 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ SG+ +GGHAIRILGWG + + YWL+ NSWNTDWGDNG FKILRG+D
Sbjct: 189 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVGNSWNTDWGDNGFFKILRGQD 238
Query: 294 ECGIESSITAGVP 306
CGIES I AG+P
Sbjct: 239 HCGIESEIVAGMP 251
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 28/30 (93%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
LP +FD+R +WPNCPTI+EIRDQGSCGSCW
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCW 30
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 17 FPGMAWRYWVKSGIVSGGAYGS 38
FP AW +W K G+VSGG Y S
Sbjct: 75 FPSGAWNFWTKKGLVSGGLYNS 96
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 120/193 (62%), Gaps = 40/193 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCEHHVNG+RP C +G TPKC + C+ Y YK+D +FG SYSV++NE
Sbjct: 51 GCRPYSIPPCEHHVNGSRPPC-TGEGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNE 109
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 110 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 140
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ SG+ +GGHAIRILGWG + + YWL+ NSWNTDWGDNG FKILRG+D
Sbjct: 141 --------QHVSGEIMGGHAIRILGWGVENGT--PYWLVGNSWNTDWGDNGFFKILRGQD 190
Query: 294 ECGIESSITAGVP 306
CGIES I AG+P
Sbjct: 191 HCGIESEIVAGMP 203
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 17 FPGMAWRYWVKSGIVSGGAYGS 38
FP AW +W K G+VSGG Y S
Sbjct: 27 FPSGAWNFWTKKGLVSGGLYNS 48
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 121/196 (61%), Gaps = 40/196 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GCRPY I PCE HVNG RP C +G TPKC + C+ Y YK+D ++G SYSVS++E
Sbjct: 105 GCRPYSIPPCEAHVNGARPPC-TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSE 163
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAF+V+ D +LYKSG +
Sbjct: 164 KDIMAEIYKNGPVEGAFSVYSDFLLYKSGVY----------------------------- 194
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+ +G+ +GGHAIRILGWG + + YWL+ANSWNTDWGDNG FKILRG+D
Sbjct: 195 --------QHVTGEMMGGHAIRILGWGVENGT--PYWLVANSWNTDWGDNGFFKILRGQD 244
Query: 294 ECGIESSITAGVPKLD 309
CGIES + AG+P+ D
Sbjct: 245 HCGIESEVVAGIPRTD 260
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LCGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
+CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 72 MCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 102
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 117/194 (60%), Gaps = 40/194 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GC PY I PCEHHVNG RP C +G TPKC + C+ Y YK+D ++G SYSVS +E
Sbjct: 161 GCLPYTIPPCEHHVNGARPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 219
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAFTVF D + YKSG +
Sbjct: 220 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 250
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+++G +GGHAIRILGWG + + YWL+ANSWN DWGDNG FKILRG++
Sbjct: 251 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNADWGDNGFFKILRGEN 300
Query: 294 ECGIESSITAGVPK 307
CGIES I AG+P+
Sbjct: 301 HCGIESEIVAGIPR 314
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 129 CGDGCNGGYPSGAWNFWTRKGLVSGGVYNS 158
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 117/194 (60%), Gaps = 40/194 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GC PY I PCEHHVNG RP C +G TPKC + C+ Y YK+D ++G SYSVS +E
Sbjct: 105 GCLPYTIPPCEHHVNGARPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 163
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAFTVF D + YKSG +
Sbjct: 164 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 194
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+++G +GGHAIRILGWG + + YWL+ANSWN DWGDNG FKILRG++
Sbjct: 195 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNADWGDNGFFKILRGEN 244
Query: 294 ECGIESSITAGVPK 307
CGIES I AG+P+
Sbjct: 245 HCGIESEIVAGIPR 258
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 73 CGDGCNGGYPSGAWNFWTRKGLVSGGVYNS 102
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 117/194 (60%), Gaps = 40/194 (20%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GC PY I PCEHHVNG RP C +G TPKC + C+ Y YK+D ++G SYSVS +E
Sbjct: 99 GCLPYTIPPCEHHVNGARPPC-TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSE 157
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K IM EIY++GPVEGAFTVF D + YKSG +
Sbjct: 158 KEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY----------------------------- 188
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
+++G +GGHAIRILGWG + + YWL+ANSWN DWGDNG FKILRG++
Sbjct: 189 --------KHEAGDVMGGHAIRILGWGIE--NGVPYWLVANSWNADWGDNGFFKILRGEN 238
Query: 294 ECGIESSITAGVPK 307
CGIES I AG+P+
Sbjct: 239 HCGIESEIVAGIPR 252
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVSGGAYGS 38
CG GCNGG+P AW +W + G+VSGG Y S
Sbjct: 67 CGDGCNGGYPSGAWNFWTRKGLVSGGVYNS 96
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 105/198 (53%), Gaps = 53/198 (26%)
Query: 114 GCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNE 173
GC PY CEHH G P C + TP+C + CQ+ Y PY +D + G SY+V ++E
Sbjct: 100 GCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDE 159
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
K+I KEI ++GPVE
Sbjct: 160 KAIQKEIMKYGPVEAG-------------------------------------------- 175
Query: 234 FTVFDDLILYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
FTV++D + YKSG + LGGHAIRI+GWG + K+ YWLIANSWN DWG+NG F
Sbjct: 176 FTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAP--YWLIANSWNEDWGENGYF 233
Query: 287 KILRGKDECGIESSITAG 304
+I+RG+DEC IES +TAG
Sbjct: 234 RIVRGRDECSIESEVTAG 251
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVSGGA 35
CG GC GG G AW YWVK GIV+G +
Sbjct: 68 CGLGCEGGILGPAWDYWVKEGIVTGSS 94
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 119/322 (36%), Gaps = 104/322 (32%)
Query: 46 LSNIPRAHLKSWMGVHPDYN----LPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIR 101
+ NI K GV N LP R E E LP++FDS WPNCPTI
Sbjct: 34 MQNITLREAKRLNGVIKKNNNASILPKRRFTE----EEARAPLPSSFDSAEAWPNCPTIP 89
Query: 102 EIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVREC------------- 148
+I DQ +CGSCW G S G C +C
Sbjct: 90 QIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAW 149
Query: 149 -----------------------------------QENYDVP---YKKD------LNFGA 164
Q N+D P Y D +N+ +
Sbjct: 150 AYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRS 209
Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
+ E M+E++ GP E AF V++D I Y SG +
Sbjct: 210 WTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH------------------- 250
Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
+ SG+ LGGHA+R++GWG + YW IANSWNT+WG +G
Sbjct: 251 ------------------HVSGQYLGGHAVRLVGWG--TSNGVPYWKIANSWNTEWGMDG 290
Query: 285 LFKILRGKDECGIESSITAGVP 306
F I RG ECGIE +AG+P
Sbjct: 291 YFLIRRGSSECGIEDGGSAGIP 312
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVS 32
CG GCNGG P AW Y+ +G+VS
Sbjct: 136 CGDGCNGGDPDRAWAYFSSTGLVS 159
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 112/298 (37%), Gaps = 100/298 (33%)
Query: 66 LPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEH 125
LP R E E LP++FDS WPNCPTI +I DQ +CGSCW
Sbjct: 80 LPKRRFTE----EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRF 135
Query: 126 HVNGTRPSCDASKGHTPKCVREC------------------------------------- 148
G S G C +C
Sbjct: 136 CTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHH 195
Query: 149 -----------QENYDVP---YKKD------LNFGAKSYSVSSNEKSIMKEIYEHGPVEG 188
Q N+D P Y D +N+ + + E M+E++ GP E
Sbjct: 196 SKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEV 255
Query: 189 AFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKA 248
AF V++D I Y SG + + SG+
Sbjct: 256 AFDVYEDFIAYNSGVYH-------------------------------------HVSGQY 278
Query: 249 LGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVP 306
LGGHA+R++GWG + YW IANSWNT+WG +G F I RG ECGIE +AG+P
Sbjct: 279 LGGHAVRLVGWG--TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIP 334
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVS 32
CG GCNGG P AW Y+ +G+VS
Sbjct: 158 CGDGCNGGDPDRAWAYFSSTGLVS 181
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 119/322 (36%), Gaps = 104/322 (32%)
Query: 46 LSNIPRAHLKSWMGVHPDYN----LPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIR 101
+ NI K GV N LP R E E LP++FDS WPNCPTI
Sbjct: 33 MQNITLREAKRLNGVIKKNNNASILPKRRFTE----EEARAPLPSSFDSAEAWPNCPTIP 88
Query: 102 EIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVREC------------- 148
+I DQ +CGSCW G S G C +C
Sbjct: 89 QIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAW 148
Query: 149 -----------------------------------QENYDVP---YKKD------LNFGA 164
Q N+D P Y D +N+ +
Sbjct: 149 AYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRS 208
Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
+ E M+E++ GP E AF V++D I Y SG +
Sbjct: 209 WTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH------------------- 249
Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
+ SG+ LGGHA+R++GWG + YW IANSWNT+WG +G
Sbjct: 250 ------------------HVSGQYLGGHAVRLVGWG--TSNGVPYWKIANSWNTEWGMDG 289
Query: 285 LFKILRGKDECGIESSITAGVP 306
F I RG ECGIE +AG+P
Sbjct: 290 YFLIRRGSSECGIEDGGSAGIP 311
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVS 32
CG GCNGG P AW Y+ +G+VS
Sbjct: 135 CGDGCNGGDPDRAWAYFSSTGLVS 158
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 98/253 (38%), Gaps = 77/253 (30%)
Query: 100 IREIRDQGSCGSCWG----------------------CRPYEIAPCEHHVNG-------- 129
+ +R+Q SCGSC+ P E+ C + G
Sbjct: 222 VSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYL 281
Query: 130 -----------TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMK 178
+C G C + +E+ Y + ++ Y NE +
Sbjct: 282 IAGKYAQDFGLVEEACFPYTGTDSPC--KMKEDCFRYYSSEYHYVGGFYG-GCNEALMKL 338
Query: 179 EIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
E+ HGP+ AF V+DD + YK G + G +RD F F+
Sbjct: 339 ELVHHGPMAVAFEVYDDFLHYKKGIYHHTG------------LRD---------PFNPFE 377
Query: 239 DLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIE 298
L HA+ ++G+G D S YW++ NSW T WG+NG F+I RG DEC IE
Sbjct: 378 ----------LTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIE 427
Query: 299 SSITAG--VPKLD 309
S A +PKL+
Sbjct: 428 SIAVAATPIPKLE 440
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 31/135 (22%)
Query: 172 NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAE 231
NE + E+ +HGP+ AF V DD + Y SG + G
Sbjct: 331 NEALMKLELVKHGPMAVAFEVHDDFLHYHSGIY---------------------HHTGLS 369
Query: 232 GAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG 291
F F+ L HA+ ++G+G+D + YW++ NSW + WG++G F+I RG
Sbjct: 370 DPFNPFE----------LTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG 419
Query: 292 KDECGIESSITAGVP 306
DEC IES A +P
Sbjct: 420 TDECAIESIAMAAIP 434
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 249 LGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGVP 306
L HA+ ++G+G D S YW++ NSW T WG+NG F+I RG DEC IES A P
Sbjct: 8 LTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 65
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWG 114
LPA+FD+R +WP CPTI+EIRDQGSCGSCW
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWA 31
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWG 114
LP +FD+R +WPNCPTI+EIRDQGSCGSCW
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWA 31
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 50/250 (20%)
Query: 71 LPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGT 130
L + Y + +P D W + E++DQG+CGS W ++ N
Sbjct: 79 LSHGVPYEANNRAVPDKID----WRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKN-E 133
Query: 131 RPSCDASKGHTPKCVRECQEN------YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHG 184
R S S+ C R N + Y+ FG ++ S Y +
Sbjct: 134 RTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESS-----------YPYT 182
Query: 185 PVEGAFTVFDDLILYKSGRFFV--PGNETTAMSLIKWTIRDNTSQLGAEG----AFTVFD 238
VEG L + K F+ G+E +L+ GAEG A V
Sbjct: 183 AVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLV-----------GAEGPAAVAVDVES 231
Query: 239 DLILYKSGKALG--------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR 290
D ++Y+SG HA+ +G+G + YW++ NSW WG+ G +++R
Sbjct: 232 DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGT--QGGTDYWIVKNSWGLSWGERGYIRMVR 289
Query: 291 GK-DECGIES 299
+ + CGI S
Sbjct: 290 NRGNMCGIAS 299
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 233 AFTVFDDLILYKSGKALG----------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGD 282
AF V +D ++Y+ G HA+ +G+GE+ YW++ NSW WG
Sbjct: 137 AFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIP--YWIVKNSWGPQWGM 194
Query: 283 NGLFKILRGKDECGIESSITAGVP 306
NG F I RGK+ CG+ + + +P
Sbjct: 195 NGYFLIERGKNMCGLAACASYPIP 218
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 91/260 (35%), Gaps = 81/260 (31%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRP---------------YEIAPCEHHVNG 129
PA+FD W + + +++QGSCGS W Y+ + E +
Sbjct: 117 PASFD----WRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVD 172
Query: 130 TRPSC---------DA-----------SKGHTPKCVRECQENYDVPYKKDLNFGAKSYSV 169
P+ DA S+G P + + +YD P + Y
Sbjct: 173 CVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYD-PNQVAARLSGYVYLS 231
Query: 170 SSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLG 229
+E + + GPV AF D Y G ++ P ET +
Sbjct: 232 GPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFT-------------- 277
Query: 230 AEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
HA+ I+G+G + + + YWL+ NSW WG +G FKI
Sbjct: 278 ----------------------HAVLIVGYGNE--NGQDYWLVKNSWGDGWGLDGYFKIA 313
Query: 290 R-GKDECGIESSITAGVPKL 308
R + CGI A VP L
Sbjct: 314 RNANNHCGIAG--VASVPTL 331
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
PA D R + + ++DQG CGSCW C+ + G P + S+ C
Sbjct: 2 PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLSEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
+ D L A + V N ++ E Y + EG T +
Sbjct: 57 -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
+G +P +E + W + + + + + + ++ H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
+ ++ + YW+I NSW T WG+ G +I +G ++C ++ ++ V
Sbjct: 169 Y--NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
PA D R + + ++DQG CGSCW C+ + G P + S+ C
Sbjct: 2 PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLSEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
+ D L A + V N ++ E Y + EG T +
Sbjct: 57 -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
+G +P +E + W + + + + + + ++ H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
+ ++ + YW+I NSW T WG+ G +I +G ++C ++ ++ V
Sbjct: 169 Y--NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
PA D R + + ++DQG CGSCW C+ + G P + ++ C
Sbjct: 2 PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLAEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
+ D L A + V N ++ E Y + EG T +
Sbjct: 57 -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
+G +P +E + W + + + + + + ++ H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
+ ++ + YW+I NSW T WG+ G +I +G ++C ++ ++ V
Sbjct: 169 Y--NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 21/227 (9%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
PA D R + + ++DQG CGSCW C+ + G P + ++ C
Sbjct: 2 PAAVDWRAR----GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAG-HPLTNLAEQMLVSC 56
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKE-IYEHGPVEG----AFTVFDDLILY 199
+ D L A + V N ++ E Y + EG T +
Sbjct: 57 -----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT 111
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
+G +P +E + W + + + + + + ++ H + ++G
Sbjct: 112 ITGHVELPQDEA---QIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVG 168
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
+ ++ + YW+I NSW T WG+ G +I +G ++C ++ ++ V
Sbjct: 169 Y--NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 72/252 (28%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVN-GTRPS--------CD 135
P +D R+K + +++DQG CGSCW + +N GT S CD
Sbjct: 2 PPEWDWRSK----GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD 57
Query: 136 ----ASKGHTPKCVRECQENY-------DVPYK---KDLNFGAK--------SYSVSSNE 173
A G P +N D Y+ + F A+ S +S NE
Sbjct: 58 KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNE 117
Query: 174 KSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA 233
+ + + + GP+ A F + Y+ G I +R S
Sbjct: 118 QKLAAWLAKRGPISVAINAFG-MQFYRHG--------------ISRPLRPLCSPW----- 157
Query: 234 FTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKD 293
L HA+ ++G+G+ +S +W I NSW TDWG+ G + + RG
Sbjct: 158 ---------------LIDHAVLLVGYGQ--RSDVPFWAIKNSWGTDWGEKGYYYLHRGSG 200
Query: 294 ECGIESSITAGV 305
CG+ + ++ V
Sbjct: 201 ACGVNTMASSAV 212
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 30/226 (13%)
Query: 83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTR-PSCDASKGHT 141
++P+ D R+ T+ IR QG CGSCW +A E R S D S+
Sbjct: 10 NVPSELDLRS----LRTVTPIRMQGGCGSCWAFSG--VAATESAYLAYRNTSLDLSEQEL 63
Query: 142 PKCVRE--CQENYDVP-----YKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
C + C + +P +++ +SY + E+ + +H + ++
Sbjct: 64 VDCASQHGCHGD-TIPRGIEYIQQNGVVEERSYPYVAREQRCRRPNSQHYGISNYCQIYP 122
Query: 195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD--DLILYKSGKALGGH 252
+ K R + T +I I+D AF +D +I + +G H
Sbjct: 123 PDV--KQIREALTQTHTAIAVIIG--IKDLR-------AFQHYDGRTIIQHDNGYQPNYH 171
Query: 253 AIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIE 298
A+ I+G+G + + YW++ NSW+T WGD+G G + IE
Sbjct: 172 AVNIVGYGSTQG--DDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 31/232 (13%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGT---------RPSCD 135
PA D R K P ++DQG CGSCW + V G SCD
Sbjct: 2 PAAVDWREKGAVTP----VKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD 57
Query: 136 ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYS-VSSNEKSIMKEIYEHGPVEGAFTVFD 194
+ + N+ V F SY VS N + ++ H + A T
Sbjct: 58 TIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGH-EIGAAITDHV 116
Query: 195 DLILYKSG-RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHA 253
DL + ++ N A+++ D TS F ++ IL H
Sbjct: 117 DLPQDEDAIAAYLAENGPLAIAV------DATS-------FMDYNGGILTSCTSEQLDHG 163
Query: 254 IRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
+ ++G+ ++ S YW+I NSW+ WG++G +I +G ++C + ++++ V
Sbjct: 164 VLLVGY--NDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYK---SGKALGGHAIRILGWGED 262
PG E M + + + +F + I ++ S K L H + ++G+G +
Sbjct: 116 APGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD-HGVLVVGYGFE 174
Query: 263 EKSKE--KYWLIANSWNTDWGDNGLFKILRGK-DECGIESSIT 302
+ + KYWL+ NSW +WG NG KI + K + CGI ++ +
Sbjct: 175 GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 206 VPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYK---SGKALGGHAIRILGWGED 262
PG E M + + + +F + I ++ S K L H + ++G+G +
Sbjct: 116 APGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD-HGVLVVGYGFE 174
Query: 263 EKSKE--KYWLIANSWNTDWGDNGLFKILRGK-DECGIESSIT 302
+ + KYWL+ NSW +WG NG KI + K + CGI ++ +
Sbjct: 175 GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 16/211 (7%)
Query: 83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTP 142
DLP + D R K + ++DQG CGSCW + +N R S +
Sbjct: 3 DLPPSVDWRQKG----AVTGVKDQGKCGSCWA---FSTVVSVEGINAIRTGSLVS--LSE 53
Query: 143 KCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVF-----DDLI 197
+ + +C + + L A Y + +N I + Y + G V ++
Sbjct: 54 QELIDCDTADNDGCQGGLMDNAFEY-IKNNGGLITEAAYPYRAARGTCNVARAAQNSPVV 112
Query: 198 LYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRIL 257
++ G VP N ++ + + + AF + + + H + ++
Sbjct: 113 VHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVV 172
Query: 258 GWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
G+G E K YW + NSW WG+ G ++
Sbjct: 173 GYGVAEDGK-AYWTVKNSWGPSWGEQGYIRV 202
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 116 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 163
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 164 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 199
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 200 VKMAKDRRNHCGIASAAS 217
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 163 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 153 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 200
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 201 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 236
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 237 VKMAKDRRNHCGIASAAS 254
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 116 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 163
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 164 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 199
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 200 VKMAKDRRNHCGIASAAS 217
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 162
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 163 ------------------------HGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGY 198
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 199 VKMAKDRRNHCGIASAAS 216
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 63/270 (23%)
Query: 61 HPDYNLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEI 120
HP+ NL R+P Y + L A+ D R+ + E++DQG CGS W
Sbjct: 101 HPE-NL---RMP----YVSSKKPLAASVDWRSN-----AVSEVKDQGQCGSSWSFSTTGA 147
Query: 121 APCEHHVNGTRPSCDASKGHTPKCVRECQENY----------DVPYKKDLNFGAKSYSVS 170
+ + R + + + + +C +Y D + ++G
Sbjct: 148 VEGQLALQRGRLTS-----LSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDYG------- 195
Query: 171 SNEKSIMKEIYEHGPVEGAFTVFD--DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQL 228
IM E +G + FD + SG + +P + +++ D Q
Sbjct: 196 -----IMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLA-------DAVGQA 243
Query: 229 GAEG-AFTVFDDLILYKSG--------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTD 279
G A D+L Y G ++ H + ++G+G D + + YW++ NSW +
Sbjct: 244 GPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD--NGQDYWILKNSWGSG 301
Query: 280 WGDNGLFKILRGK-DECGIESSITAGVPKL 308
WG++G ++ +R + CGI + A P L
Sbjct: 302 WGESGYWRQVRNYGNNCGI--ATAASYPAL 329
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 54/236 (22%)
Query: 90 SRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCE---HHVNGTRPSCDASK----GHTP 142
S W + + +I+ QG CG CW IA E V G S + G T
Sbjct: 3 SYVDWRSAGAVVDIKSQGECGGCWAFSA--IATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 143 KCVRECQENYDVP-YKKDLNFGA----KSYSVSS----------NEKSIMKEIYEHGPVE 187
R C Y ++ +N G ++Y ++ NEK + + YE+
Sbjct: 61 N-TRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYEN---- 115
Query: 188 GAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG-AFTVFDDLILYKSG 246
VP N A+ T + + L A G AF + I
Sbjct: 116 ------------------VPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGPC 156
Query: 247 KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGIES 299
HA+ I+G+G + YW++ NSW+T WG+ G +ILR G CGI +
Sbjct: 157 GTAIDHAVTIVGYGTE--GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIAT 210
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGIES 299
HAI I+G+G + YW++ NSW+T WG+ G +ILR G CGI +
Sbjct: 162 HAIVIVGYGTE--GGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIAT 210
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 211 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 258
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWGED--EKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G + E KYWL+ NSW +WG G
Sbjct: 259 ------------------------HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 295 VKMAKDRRNHCGIASAAS 312
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 87/259 (33%), Gaps = 54/259 (20%)
Query: 65 NLPANRLPELIGYSEVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPY------ 118
++ N + Y EV D N W + +++QGSCGS W
Sbjct: 129 SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESI 188
Query: 119 ---EIAPCEHHVNGTRPSCD----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSS 171
+ CD G P + Y + Y+ + S
Sbjct: 189 IKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRS 248
Query: 172 NEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAE 231
EK G + D + R P NE + ++I + + E
Sbjct: 249 REK-------------GPYAAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLE 286
Query: 232 GAFTVFDDLILYKSGKALG------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGL 285
A D LY+ G +G HA+ +G+G + Y LI NSW T WG+NG
Sbjct: 287 AAGK---DFQLYRGGIFVGPCGNKVDHAVAAVGYGPN------YILIRNSWGTGWGENGY 337
Query: 286 FKILRGKDE----CGIESS 300
+I RG CG+ +S
Sbjct: 338 IRIKRGTGNSYGVCGLYTS 356
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 84/240 (35%), Gaps = 58/240 (24%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
+P D R K P +++QGSCGSCW G + C
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
D G P + Y + Y+ + S EK G +
Sbjct: 57 DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
D + R P NE + ++I + + E A D LY+ G +G
Sbjct: 104 AAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLEAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
HA+ +G+G + Y LI NSW T WG+NG +I RG CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)
Query: 169 VSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQ 227
+ EK++MK + GP+ A + + YK G +F P + M
Sbjct: 207 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD------------ 254
Query: 228 LGAEGAFTVFDDLILYKSGKALGGHAIRILGWG--EDEKSKEKYWLIANSWNTDWGDNGL 285
H + ++G+G E KYWL+ NSW +WG G
Sbjct: 255 ------------------------HGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGY 290
Query: 286 FKILRG-KDECGIESSIT 302
K+ + ++ CGI S+ +
Sbjct: 291 VKMAKDRRNHCGIASAAS 308
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG-----HA 253
Y+S RF N + +IK + + S + A V K K L G HA
Sbjct: 144 YESERFH--DNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHA 201
Query: 254 IRILGWGE---DEKSKEKYWLIANSWNTDWGDNGLFKI-LRGKDEC 295
+ I+G+G E K+ YW++ NSW WGD G FK+ + G C
Sbjct: 202 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHC 247
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE---CGI 297
H + ++G+G D++SK+ +W++ NSW T WG +G + K E CG+
Sbjct: 167 HGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGL 215
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWG 114
LP+ + W + + ++DQ CGSCW
Sbjct: 3 LPSELPAGVDWRSRGCVTPVKDQRDCGSCWA 33
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 75/210 (35%), Gaps = 14/210 (6%)
Query: 94 WPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKCVRECQENYD 153
W + + +I+DQG CGSCW + + T S+ C R
Sbjct: 7 WRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKI-ATGDLISLSEQELVDCGRTQNTR-- 63
Query: 154 VPYKKDLNFGAKSYSVSSNEKSIMKEI-YEHGPVEGAFTVFDDLILYKSGRFF--VPGNE 210
D F + N I E Y + EG + Y S + VP N
Sbjct: 64 ---GCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 211 TTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYW 270
A+ + + A F + I HA+ I+G+G + YW
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTE--GGIDYW 178
Query: 271 LIANSWNTDWGDNGLFKILR---GKDECGI 297
++ NSW T WG+ G +I R G +CGI
Sbjct: 179 IVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+GE + +K +W+I NSW +WG G K+ R K+ CGI + A PK+
Sbjct: 162 HAVLAVGYGESKGNK--HWIIKNSWGENWGMGGYIKMARNKNNACGIAN--LASFPKM 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 43/157 (27%)
Query: 148 CQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTV-FDDLILYKSGRFFV 206
C+ N D+ F + EK++MK + GP+ A + + YK G +F
Sbjct: 98 CKYNPKYSVANDVGF----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFS 153
Query: 207 PGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSK 266
+++++ HA+ ++G+G +
Sbjct: 154 SDCSSSSLN------------------------------------HAMLVVGYGFI-SNN 176
Query: 267 EKYWLIANSWNTDWGDNGLFKILRG-KDECGIESSIT 302
+KYWL+ NSW +WG G K+ + ++ CGI S+ +
Sbjct: 177 QKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 213
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 84/240 (35%), Gaps = 58/240 (24%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
+P D R K P +++QGSCGSCW G + C
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
D G P + Y + Y+ + S EK G +
Sbjct: 57 DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
D + R P N+ + ++I + + + A D LY+ G +G
Sbjct: 104 AAKTDGV-----RQVQPYNQGALL----YSIANQPVSVVLQAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
HA+ +G+G + Y LI NSW T WG+NG +I RG CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 27/225 (12%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
+PA+ D R K + ++DQG CGSCW + + T S+
Sbjct: 2 VPASVDWRKK----GAVTSVKDQGQCGSCWAFSTIVAVEGINQIK-TNKLVSLSEQELVD 56
Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVS--SNEKSIMKEI-YEHGPVEGAFTVFDDLILYK 200
C D + N G Y+ I E Y + +G V +
Sbjct: 57 C--------DTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAV 108
Query: 201 S--GRFFVPGNETTAMSLIKWTIRDNTS-QLGAEGA-FTVFDDLILYKSGKALGGHAIRI 256
S G VP N+ A L+K S + A G+ F + + + S H + I
Sbjct: 109 SIDGHENVPENDENA--LLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAI 166
Query: 257 LGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGI 297
+G+G KYW + NSW +WG+ G ++ RG + CGI
Sbjct: 167 VGYGTTIDGT-KYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG-----HA 253
Y+S RF N + +IK + + S + A V K + L G HA
Sbjct: 143 YESERFH--DNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHA 200
Query: 254 IRILGWGE---DEKSKEKYWLIANSWNTDWGDNGLFKI-LRGKDEC 295
+ I+G+G E K+ YW++ NSW WGD G FK+ + G C
Sbjct: 201 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHC 246
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 80/230 (34%), Gaps = 54/230 (23%)
Query: 94 WPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSCD----ASKGH 140
W + +++QGSCGSCW G + CD G
Sbjct: 7 WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGG 66
Query: 141 TPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYK 200
P + Y + Y+ + S EK G + D +
Sbjct: 67 YPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPYAAKTDGV--- 110
Query: 201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG------GHAI 254
R P N+ + ++I + + + A D LY+ G +G HA+
Sbjct: 111 --RQVQPYNQGALL----YSIANQPVSVVLQAAG---KDFQLYRGGIFVGPCGNKVDHAV 161
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
+G+G + Y LI NSW T WG+NG +I RG CG+ +S
Sbjct: 162 AAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 20/210 (9%)
Query: 80 VDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEH-HVNGTRPSCDASK 138
++ + PA D R T+ IR QG CGSCW +A E ++ + S D ++
Sbjct: 6 INGNAPAEIDLRQM----RTVTPIRMQGGCGSCWAFSG--VAATESAYLAYRQQSLDLAE 59
Query: 139 GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLIL 198
C + + D + S + + +E P F + + +
Sbjct: 60 QELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI 119
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG--AFTVFD--DLILYKSGKALGGHAI 254
Y P N + T +G + AF +D +I +G HA+
Sbjct: 120 Y-------PPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
I+G+ + YW++ NSW+T+WGDNG
Sbjct: 173 NIVGYSNAQGVD--YWIVRNSWDTNWGDNG 200
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 56/215 (26%)
Query: 87 NFDSRTKWPNCP-TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC- 144
N + WP+ +++ + D G+ GSC G + H +C+ + +C
Sbjct: 45 NIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECD 104
Query: 145 ----------VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
+EC + + ++G S+S EK +M EIY +GP+ +
Sbjct: 105 KFNQCGTCNEFKECHAIRNYTLWRVGDYG----SLSGREK-MMAEIYANGPISCGIMATE 159
Query: 195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAI 254
L Y G + +TT ++ H +
Sbjct: 160 RLANYTGG-IYAEYQDTTYIN------------------------------------HVV 182
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
+ GWG + ++ YW++ NSW WG+ G +I+
Sbjct: 183 SVAGWGISDGTE--YWIVRNSWGEPWGERGWLRIV 215
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 56/215 (26%)
Query: 87 NFDSRTKWPNCP-TIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC- 144
N + WP+ +++ + D G+ GSC G + H +C+ + +C
Sbjct: 80 NIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECD 139
Query: 145 ----------VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
+EC + + ++G S+S EK +M EIY +GP+ +
Sbjct: 140 KFNQCGTCNEFKECHAIRNYTLWRVGDYG----SLSGREK-MMAEIYANGPISCGIMATE 194
Query: 195 DLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAI 254
L Y G + +TT ++ H +
Sbjct: 195 RLANYTGG-IYAEYQDTTYIN------------------------------------HVV 217
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKIL 289
+ GWG + ++ YW++ NSW WG+ G +I+
Sbjct: 218 SVAGWGISDGTE--YWIVRNSWGEPWGERGWLRIV 250
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 80 VDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTR-PSCDASK 138
++ + PA D R T+ IR QG CGSCW +A E R S D ++
Sbjct: 6 INGNAPAEIDLRQM----RTVTPIRMQGGCGSCWAFSG--VAATESAYLAYRNQSLDLAE 59
Query: 139 GHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLIL 198
C + + D + S + + +E P F + + +
Sbjct: 60 QELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI 119
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG--AFTVFD--DLILYKSGKALGGHAI 254
Y P N + T +G + AF +D +I +G HA+
Sbjct: 120 Y-------PPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
I+G+ + YW++ NSW+T+WGDNG
Sbjct: 173 NIVGYSNAQGVD--YWIVRNSWDTNWGDNG 200
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR---GKDECGI 297
HA+ I+G+G + YW++ NSW T WG+ G +I R G +CGI
Sbjct: 162 HAVTIVGYGTE--GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 89/230 (38%), Gaps = 34/230 (14%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP + D R K + E++ QGSCG+CW + E + K T K
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSA--VGALEAQL----------KLKTGK 44
Query: 144 CVRECQENY-DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG 202
V +N D KK N G +++ + I+ + D Y S
Sbjct: 45 LVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSA 104
Query: 203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDD-----LILYKSGKALG------- 250
+ T + + + + +G +V D LY+SG
Sbjct: 105 YRAATCRKYTELPYGREDVLKEA--VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 251 GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 163 NHGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEKGYIRMARNKGNHCGIAS 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 83/240 (34%), Gaps = 58/240 (24%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
+P D R K P +++QGSCGS W G + C
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
D G P + Y + Y+ + S EK G +
Sbjct: 57 DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
D + R P NE + ++I + + E A D LY+ G +G
Sbjct: 104 AAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLEAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
HA+ +G+G + Y LI NSW T WG+NG +I RG CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 83/240 (34%), Gaps = 58/240 (24%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPSC 134
+P D R K P +++QGSCGS W G + C
Sbjct: 1 IPEYVDWRQKGAVTP----VKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC 56
Query: 135 D----ASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF 190
D G P + Y + Y+ + S EK G +
Sbjct: 57 DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREK-------------GPY 103
Query: 191 TVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG 250
D + R P NE + ++I + + E A D LY+ G +G
Sbjct: 104 AAKTDGV-----RQVQPYNEGALL----YSIANQPVSVVLEAAG---KDFQLYRGGIFVG 151
Query: 251 ------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
HA+ +G+G + Y LI NSW T WG+NG +I RG CG+ +S
Sbjct: 152 PCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTS 205
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 239 DLILYKSGKALG------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK 292
D LY+ G +G HA+ +G+G + Y LI NSW T WG+NG +I RG
Sbjct: 140 DFQLYRGGIFVGPCGNKVDHAVAAVGYGPN------YILIKNSWGTGWGENGYIRIKRGT 193
Query: 293 DE----CGIESS 300
CG+ +S
Sbjct: 194 GNSYGVCGLYTS 205
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 30/221 (13%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP D R K P +++QGSCGSCW + +N R S
Sbjct: 1 LPEQIDWRKKGAVTP----VKNQGSCGSCWA---FSTVSTVESINQIRTGNLISLSE--- 50
Query: 144 CVRECQENYDVPYKKDLNFGAK---SYSVSSNEKSIMKEI-YEHGPVEGAFTVFDDLILY 199
QE D K G +Y N I + Y + V+G ++
Sbjct: 51 -----QELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSI 105
Query: 200 KSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGA-FTVFDDLILYKSGKALGGHAIRILG 258
NE + ++ +T + A A F + I H + I+G
Sbjct: 106 DGYNGVPFCNEXALKQAV--AVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVG 163
Query: 259 WGEDEKSKEKYWLIANSWNTDWGDNGLFKILR--GKDECGI 297
+ + YW++ NSW WG+ G ++LR G CGI
Sbjct: 164 Y------QANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 38/229 (16%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNG--TRPSCDASKGHT 141
+P + D R K P +R+QG CGSCW + +N T S+
Sbjct: 1 IPTSIDWRQKGAVTP----VRNQGGCGSCW---TFSSVAAVEGINKIVTGQLLSLSEQEL 53
Query: 142 PKCVRE---CQEN---YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDD 195
C R C+ Y + Y + + Y + + GP V D
Sbjct: 54 LDCERRSYGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGP-----KVKTD 108
Query: 196 LILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG-AFTVFDDLILYKSGKALGGHAI 254
+ GR VP N A+ + + I+ + + A+G AF + I HA+
Sbjct: 109 GV----GR--VPRNNEQAL-IQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAV 161
Query: 255 RILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG----KDECGIES 299
+G+G D Y LI NSW T WG+ G +I RG + CG+ S
Sbjct: 162 AAVGYGND------YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLS 204
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 164 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 164 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 166 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 212
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 34/230 (14%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP + D R K + E++ QGSCG+CW + E + K T K
Sbjct: 1 LPDSVDWREK----GCVTEVKYQGSCGACWAFSA--VGALEAQL----------KLKTGK 44
Query: 144 CVRECQENY-DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG 202
V +N D +K N G +++ + I+ + D Y S
Sbjct: 45 LVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK 104
Query: 203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDD-----LILYKSGKALG------- 250
++ T + + + + +G +V D LY+SG
Sbjct: 105 YRAATCSKYTELPYGREDVLKEA--VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 162
Query: 251 GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 163 NHGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 165 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 34/230 (14%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP + D R K + E++ QGSCG+CW + E + K T K
Sbjct: 4 LPDSVDWREK----GCVTEVKYQGSCGACWAFSA--VGALEAQL----------KLKTGK 47
Query: 144 CVRECQENY-DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG 202
V +N D +K N G +++ + I+ + D Y S
Sbjct: 48 LVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK 107
Query: 203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDD-----LILYKSGKALG------- 250
++ T + + + + +G +V D LY+SG
Sbjct: 108 YRAATCSKYTELPYGREDVLKEA--VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 165
Query: 251 GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 166 NHGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 213
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 34/230 (14%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP + D R K + E++ QGSCG+CW + E + K T K
Sbjct: 2 LPDSVDWREK----GCVTEVKYQGSCGACWAFSA--VGALEAQL----------KLKTGK 45
Query: 144 CVRECQENY-DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSG 202
V +N D +K N G +++ + I+ + D Y S
Sbjct: 46 LVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK 105
Query: 203 RFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDD-----LILYKSGKALG------- 250
++ T + + + + +G +V D LY+SG
Sbjct: 106 YRAATCSKYTELPYGREDVLKEA--VANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNV 163
Query: 251 GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 164 NHGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 164 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEKGYIRMARNKGNHCGIAS 210
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 165 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 211
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 164 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 164 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 210
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 239 DLILYKSGKALG------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK 292
D LY+SG G HA+ ++G+G + + + +W++ NSW +WG++G + R
Sbjct: 142 DFQLYRSGIFTGSCNISANHALTVVGYGTE--NDKDFWIVKNSWGKNWGESGYIRAERNI 199
Query: 293 D----ECGI 297
+ +CGI
Sbjct: 200 ENPDGKCGI 208
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 82 EDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
+DLP + D W + +++QG CGSCW
Sbjct: 1 DDLPDSID----WRENGAVVPVKNQGGCGSCW 28
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 233 AFTVFD--DLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
AF +D +I +G HA+ I+G+ + YW++ NSW+T+WGDNG
Sbjct: 149 AFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVD--YWIVRNSWDTNWGDNG 200
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 233 AFTVFD--DLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
AF +D +I +G HA+ I+G+ + YW++ NSW+T+WGDNG
Sbjct: 229 AFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVD--YWIVRNSWDTNWGDNG 280
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G + +K +W+I NSW +WG+ G + R K+ CGI + A PK+
Sbjct: 162 HAVLAVGYGIQKGNK--HWIIKNSWGENWGNKGYILMARNKNNACGIAN--LASFPKM 215
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G + +K +W+I NSW +WG+ G + R K+ CGI + A PK+
Sbjct: 164 HAVLAVGYGIQKGNK--HWIIKNSWGENWGNKGYILMARNKNNACGIAN--LASFPKM 217
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G + +K +W+I NSW +WG+ G + R K+ CGI + A PK+
Sbjct: 160 HAVLAVGYGIQKGNK--HWIIKNSWGENWGNKGYILMARNKNNACGIAN--LASFPKM 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G + +K +W+I NSW +WG+ G + R K+ CGI + A PK+
Sbjct: 161 HAVLAVGYGIQKGNK--HWIIKNSWGENWGNKGYILMARNKNNACGIAN--LASFPKM 214
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGK-DECGIES 299
H + ++G+G D KE YWL+ NSW ++G+ G ++ R K + CGI S
Sbjct: 262 HGVLVVGYG-DLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 85/228 (37%), Gaps = 44/228 (19%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPS--CDASKGHT 141
LP + D R K P +++QG CGSCW + +N R S+
Sbjct: 1 LPEHVDWRAKGAVIP----LKNQGKCGSCWA---FSTVTTVESINQIRTGNLISLSEQQL 53
Query: 142 PKCVRE---CQENY-DVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLI 197
C ++ C+ Y D Y+ + G + K+ GP A +
Sbjct: 54 VDCSKKNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAF------QGPCRAA-----KKV 102
Query: 198 LYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG------G 251
+ G VP A+ K + S + + + F YK G G
Sbjct: 103 VRIDGCKGVPQCNENAL---KNAVASQPSVVAIDASSKQFQH---YKGGIFTGPCGTKLN 156
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR--GKDECGI 297
H + I+G+G+D YW++ NSW WG+ G ++ R G CGI
Sbjct: 157 HGVVIVGYGKD------YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGI 198
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G ++ K+W+I NSW WG+ G + R K+ CGI + A PK+
Sbjct: 162 HAVLAVGYGI--QAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIAN--LASFPKM 215
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 13/207 (6%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP+ D R+K + I++Q CGSCW + +N R S + +
Sbjct: 1 LPSFVDWRSK----GAVNSIKNQKQCGSCWA---FSAVAAVESINKIRTGQLISL--SEQ 51
Query: 144 CVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGR 203
+ +C +N A Y ++ N ++ Y + V+G+ + ++ +G
Sbjct: 52 ELVDCDTASHGCNGGWMN-NAFQYIIT-NGGIDTQQNYPYSAVQGSCKPYRLRVVSINGF 109
Query: 204 FFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDE 263
V N +A+ + + + A F + I H + I+G+G
Sbjct: 110 QRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGT-- 167
Query: 264 KSKEKYWLIANSWNTDWGDNGLFKILR 290
+S + YW++ NSW +WG+ G + R
Sbjct: 168 QSGKNYWIVRNSWGQNWGNQGYIWMER 194
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G + +K +W+I NSW +WG+ G + R K+ CGI + A PK+
Sbjct: 261 HAVLAVGYGIQKGNK--HWIIKNSWGENWGNKGYILMARNKNNACGIAN--LASFPKM 314
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE-CGIESSITAGVPKL 308
HA+ +G+G + +K +W+I NSW WG+ G + R K+ CGI + A PK+
Sbjct: 162 HAVLAVGYGIQKGNK--HWIIKNSWGESWGNKGYILMARNKNNACGIAN--LASFPKM 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 42/234 (17%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
PA+ D R K + ++DQG+CG CW G DA
Sbjct: 2 PASIDWRKK----GAVTSVKDQGACGMCW----------AFGATGAIEGIDAITTGRLIS 47
Query: 145 VRECQENYDVPYKKDLNFGAKSYS----VSSNEKSIMKEIYEHGPVEGAFTVFDDLILYK 200
V E Q+ D G + V +N Y + V+G + +
Sbjct: 48 VSE-QQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIAARI 106
Query: 201 SGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG--------- 251
G VP + + + + Q + +T LY G
Sbjct: 107 DGYTNVPNSSSALLDAVA-------KQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPAT 159
Query: 252 --HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDE----CGIES 299
H + I+G+G + + + YW++ NSW T+WG +G I R + C I++
Sbjct: 160 VDHTVLIVGYGSNGTNAD-YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDA 212
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 20/90 (22%)
Query: 238 DDLILYKSG------KALGGHAIRILGWG------EDEKSKEK--YWLIANSWNTDWGDN 283
DD Y+ G A HA+ ++G+G ED EK Y++I NSW +DWG+
Sbjct: 156 DDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEG 215
Query: 284 GLFKILRGKDECGIESSITAG----VPKLD 309
G + DE G + + + G VP L+
Sbjct: 216 GYINL--ETDENGYKKTCSIGTEAYVPLLE 243
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 233 AFTVFDDLILYKSGKALG------GHAIRILGWGEDE------KSKEK--YWLIANSWNT 278
+ V DD YK G G HA+ ++G+G E K EK Y++I NSW
Sbjct: 148 SVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQ 207
Query: 279 DWGDNGLFKILRGKDECGI 297
WG+ G I DE G+
Sbjct: 208 QWGERGFINI--ETDESGL 224
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 233 AFTVFDDLILYKSGKALG------GHAIRILGWGEDE------KSKEK--YWLIANSWNT 278
+ V DD YK G G HA+ ++G+G E K EK Y++I NSW
Sbjct: 149 SVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQ 208
Query: 279 DWGDNGLFKILRGKDECGI 297
WG+ G I DE G+
Sbjct: 209 QWGERGFINI--ETDESGL 225
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 32/118 (27%)
Query: 198 LYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDD-----LILYKSGKALG-- 250
+Y +G +VP N+ +SLI Q A +V D YK G G
Sbjct: 105 VYITGYKYVPAND--EISLI---------QAIANQPVSVVTDSRGRGFQFYKGGIYEGPC 153
Query: 251 ----GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG----KDECGIESS 300
HA+ +G+G+ Y L+ NSW +WG+ G +I R K CG+ +S
Sbjct: 154 GTNTDHAVTAVGYGKT------YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTS 205
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 82/229 (35%), Gaps = 46/229 (20%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTPK 143
LP D R K P +++QG CGSCW + +N R S
Sbjct: 1 LPEQIDWRKKGAVTP----VKNQGKCGSCWA---FSTVSTVESINQIRTGNLISLSE--- 50
Query: 144 CVRECQENYDVPYKKDLNFGAK------SYSVSSNEKSIMKEI-YEHGPVEGAFTVFDDL 196
Q+ D K N G K +Y + I E Y + V+G +
Sbjct: 51 -----QQLVDCNKK---NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKKV 102
Query: 197 ILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALG------ 250
+ + NE +K + S + + + F YKSG G
Sbjct: 103 VRIDGYKGVPHCNENA----LKKAVASQPSVVAIDASSKQFQH---YKSGIFSGPCGTKL 155
Query: 251 GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR--GKDECGI 297
H + I+G+ +D YW++ NSW WG+ G ++ R G CGI
Sbjct: 156 NHGVVIVGYWKD------YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGI 198
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 268 KYWLIANSWNTDWGDNGLFKILRG-KDECGIESSIT 302
KYWL+ NSW +WG G K+ + ++ CGI S+ +
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 38
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 242 LYKSGKALG------GHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR----G 291
LYKSG G HA+ +G+G + + Y +I NSW +WG+ G ++ R
Sbjct: 143 LYKSGVFDGPCGTKLDHAVTAVGYGTSDG--KNYIIIKNSWGPNWGEKGYMRLKRQSGNS 200
Query: 292 KDECGIESS 300
+ CG+ S
Sbjct: 201 QGTCGVYKS 209
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 44/150 (29%)
Query: 100 IREIRDQGSCGSCWG----------------------CRPYEIAPCEHHVNG-------- 129
+ +R+Q SCGSC+ P E+ C + G
Sbjct: 16 VSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYL 75
Query: 130 -----------TRPSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMK 178
+C G C + +E+ Y + ++ Y NE +
Sbjct: 76 IAGKYAQDFGLVEEACFPYTGTDSPC--KMKEDCFRYYSSEYHYVGGFYG-GCNEALMKL 132
Query: 179 EIYEHGPVEGAFTVFDDLILYKSGRFFVPG 208
E+ HGP+ AF V+DD + YK G + G
Sbjct: 133 ELVHHGPMAVAFEVYDDFLHYKKGIYHHTG 162
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCWG 114
+LP N D R K P +R QGSCGSCW
Sbjct: 106 NLPENVDWRKKGAVTP----VRHQGSCGSCWA 133
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 271 LIANSWNTDWGDNGLFKILRG 291
LI NSW T WG+ G +I R
Sbjct: 282 LIKNSWGTAWGEKGYIRIKRA 302
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 82/222 (36%), Gaps = 32/222 (14%)
Query: 83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTP 142
D P ++D W I +++ QG CGS W H + T S+
Sbjct: 1 DAPESWD----WSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAI-ATGNLVSLSEQELI 55
Query: 143 KCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEG---AFTVFDDLIL- 198
CV E + Y+ + + + K ++S Y + +G A + D + +
Sbjct: 56 DCVDESEGCYNGWHYQSFEWVVKHGGIASEAD------YPYKARDGKCKANEIQDKVTID 109
Query: 199 -YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG------ 251
Y E+ A S ++ + + + + D Y G GG
Sbjct: 110 NYGVQILSNESTESEAESSLQSFVLEQPISVSIDAK-----DFHFYSGGIYDGGNCSSPY 164
Query: 252 ---HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILR 290
H + I+G+G ++ YW+ NSW DWG +G +I R
Sbjct: 165 GINHFVLIVGYGSEDGV--DYWIAKNSWGEDWGIDGYIRIQR 204
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
LP N D R K P +R QGSCGSCW
Sbjct: 1 LPENVDWRKKGAVTP----VRHQGSCGSCW 26
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 271 LIANSWNTDWGDNGLFKILR 290
LI NSW T WG+ G +I R
Sbjct: 176 LIKNSWGTAWGEKGYIRIKR 195
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
LP N D R K P +R QGSCGSCW
Sbjct: 1 LPENVDWRKKGAVTP----VRHQGSCGSCW 26
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 271 LIANSWNTDWGDNGLFKILR 290
LI NSW T WG+ G +I R
Sbjct: 176 LIKNSWGTAWGEKGYIRIKR 195
>pdb|1RW7|A Chain A, Crystal Structure Of Ydr533cp
Length = 243
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 137 SKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF----TV 192
+K TPK V ++Y + + + Y + + + I EIY +G V A +
Sbjct: 86 AKIKTPKEVN--ADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAI 143
Query: 193 FDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
FD L K+GR + G T + + TI S L A+ TV D
Sbjct: 144 FDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVED 189
>pdb|1QVV|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|C Chain C, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|D Chain D, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 152 YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF----TVFDDLILYKSGRFFVP 207
+D P KDL + I EIY +G V A +FD L K+GR +
Sbjct: 112 FDYPKAKDL-------------QDIASEIYANGGVVAAVXHGPAIFDGLTDKKTGRPLIE 158
Query: 208 GNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
G T + + TI S L A+ TV D
Sbjct: 159 GKSITGFTDVGETILGVDSILKAKNLATVED 189
>pdb|1QVW|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVW|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 152 YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF----TVFDDLILYKSGRFFVP 207
+D P KDL + I EIY +G V A +FD L K+GR +
Sbjct: 112 FDYPKAKDL-------------QDIASEIYANGGVVAAVXHGPAMFDGLTDKKTGRPLIE 158
Query: 208 GNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
G T + + TI S L A+ TV D
Sbjct: 159 GKSITGFTDVGETIMGVDSILKAKNLATVED 189
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 271 LIANSWNTDWGDNGLFKILRGKDE----CGIESS 300
LI NSW WG+NG +I R CG+ S
Sbjct: 176 LIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRS 209
>pdb|1QVZ|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVZ|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 152 YDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAF----TVFDDLILYKSGRFFVP 207
+D P KDL + I EIY +G V A FD L K+GR +
Sbjct: 112 FDYPKAKDL-------------QDIASEIYANGGVVAAVXHGPAXFDGLTDKKTGRPLIE 158
Query: 208 GNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
G T + + TI S L A+ TV D
Sbjct: 159 GKSITGFTDVGETIXGVDSILKAKNLATVED 189
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 139 GHTPKCVRECQENYDVPYKKDL----NFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFD 194
HT V +C+E YD+ YK + N A +YSV + I + G + T FD
Sbjct: 72 AHT--AVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFD 129
Query: 195 DL 196
++
Sbjct: 130 EV 131
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 247 KALGGHAIRILGWGEDEKSKEKY-WLIANSWNTDWGDNGLF 286
++L HA+ I G DE SK + + NSW D G +GL+
Sbjct: 364 ESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 404
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 247 KALGGHAIRILGWGEDEKSKEKY-WLIANSWNTDWGDNGLF 286
++L HA+ I G DE SK + + NSW D G +GL+
Sbjct: 368 ESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 247 KALGGHAIRILGWGEDEKSKEKY-WLIANSWNTDWGDNGLF 286
++L HA+ I G DE SK + + NSW D G +GL+
Sbjct: 381 ESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 421
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 247 KALGGHAIRILGWGEDEKSKEKY-WLIANSWNTDWGDNGLF 286
++L HA+ I G DE SK + + NSW D G +GL+
Sbjct: 381 ESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,976,133
Number of Sequences: 62578
Number of extensions: 492749
Number of successful extensions: 1324
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 310
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)