RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8713
(309 letters)
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 220 bits (563), Expect = 2e-71
Identities = 100/282 (35%), Positives = 128/282 (45%), Gaps = 108/282 (38%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGS------------------------------------ 108
P +FD+R KWPNC +I EIRDQG+
Sbjct: 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60
Query: 109 -CGSC------------W-----------GCRPYEIAPCEHHVNGTRPSCDASKGHTPKC 144
C C W GC+PY I PC HH G P C TP C
Sbjct: 61 CCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCG-----TPYC 115
Query: 145 VRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRF 204
+CQ+ + Y++D + G +YSV S+E IMKEI +GPV+ AFTV++D + YKSG
Sbjct: 116 TPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSG-- 173
Query: 205 FVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYK--SGKALGGHAIRILGWGED 262
+Y+ SGK LGGHA++I+GWG +
Sbjct: 174 -------------------------------------VYQHTSGKQLGGHAVKIIGWGVE 196
Query: 263 EKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAG 304
YWL ANSW TDWG+NG F+ILRG +ECGIES + AG
Sbjct: 197 NG--VPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVAG 236
Score = 53.8 bits (130), Expect = 2e-08
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 9 CGFGCNGGFPGMAWRYWVKSGIVSGGAY 36
CG GCNGG+P AW+Y +G+V+GG
Sbjct: 65 CGDGCNGGYPDAAWKYLTTTGVVTGGCQ 92
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 112 bits (282), Expect = 1e-29
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 69/267 (25%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCWGC-------RPYEIAPCEHHVNGTRP---- 132
LP +FD + +R+QG CGSC+ IA + G +P
Sbjct: 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60
Query: 133 ----SCDA-SKG-------------------------HTPKCVREC---QENYDVPYKKD 159
SC S+G +T R C Y D
Sbjct: 61 QHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTADDDRPCKASPSECRRYYFSD 120
Query: 160 LNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKW 219
N+ Y + NE + EIY +GP+ AF V+ D YK G +
Sbjct: 121 YNYVGGCYGCT-NEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHH------------- 166
Query: 220 TIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTD 279
T D S + F F+ L HA+ ++GWGEDE EKYW++ NSW +
Sbjct: 167 TDNDEVSDGDNDN-FNPFE----------LTNHAVLLVGWGEDEIKGEKYWIVKNSWGSS 215
Query: 280 WGDNGLFKILRGKDECGIESSITAGVP 306
WG+ G FKI RG +ECGIES P
Sbjct: 216 WGEKGYFKIRRGTNECGIESQAVFAYP 242
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 111 bits (279), Expect = 2e-29
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 46/169 (27%)
Query: 138 KGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDD-L 196
H C + + Y K +G Y+ +E+++ + ++GPV A ++D
Sbjct: 90 TAHDGTCKFKKSNSK---YAKIKGYGDVPYN---DEEALQAALAKNGPVSVAIDAYEDDF 143
Query: 197 ILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRI 256
LYKSG V+ HA+ I
Sbjct: 144 QLYKSG---------------------------------VYKHTECSGEL----DHAVLI 166
Query: 257 LGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGIESSITAGV 305
+G+G + YW++ NSW TDWG+NG F+I RG +ECGI S + +
Sbjct: 167 VGYGTENG--VPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213
Score = 46.0 bits (110), Expect = 6e-06
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
LP +FD R K + ++DQG CGSCW
Sbjct: 1 LPESFDWREKGA----VTPVKDQGQCGSCW 26
Score = 40.2 bits (95), Expect = 5e-04
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 9 CGFGCNGGFPGMAWRYWVKS-GIVSGGAY 36
GCNGG P A+ Y K+ GIV+ Y
Sbjct: 59 GNNGCNGGLPDNAFEYIKKNGGIVTESDY 87
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 90.4 bits (225), Expect = 1e-21
Identities = 54/255 (21%), Positives = 81/255 (31%), Gaps = 90/255 (35%)
Query: 85 PANFDSRTKWPNCPTIREIRDQGSCGSCW---------GCRPYEIAPCEHHVNGTRPS-- 133
P + D R K + ++DQGSCGSCW G Y I G S
Sbjct: 1 PESVDWREKG----AVTPVKDQGSCGSCWAFSTVGALEGA--YAIK------TGKLVSLS 48
Query: 134 ------CDASKGH-----TPKCVRECQENYDVPYKKDLNFGAK----------------- 165
C S + P E +N + + D + K
Sbjct: 49 EQQLVDCSTSGNNGCNGGNPDNAFEYVKNGGLASESDYPYTGKDGTCKYNSSKVGAKITG 108
Query: 166 -SYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
S +E+++ + +GPV A YK G
Sbjct: 109 YSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGG---------------------- 146
Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
++ HA+ ++G+G + YW++ NSW T WG+ G
Sbjct: 147 -----------IYSG---PCCSNTNLNHAVLLVGYGTENG--VDYWIVKNSWGTSWGEKG 190
Query: 285 LFKILRGKDECGIES 299
+I RG + CGI S
Sbjct: 191 YIRIARGSNLCGIAS 205
Score = 33.8 bits (78), Expect = 0.073
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 4 QQI----RLCGFGCNGGFPGMAWRYWVKSGIVSGGAY 36
QQ+ GCNGG P A+ Y G+ S Y
Sbjct: 50 QQLVDCSTSGNNGCNGGNPDNAFEYVKNGGLASESDY 86
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 88.4 bits (220), Expect = 3e-21
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 233 AFTVFDDLILYKSG--------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
D YKSG HA+ I+G+G + ++ + YW++ NSW TDWG+NG
Sbjct: 94 VAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENG 153
Query: 285 LFKILRGKD-ECGIESSITAGV 305
F+I RGK+ ECGIE+S+ +
Sbjct: 154 YFRIARGKNNECGIEASVASYP 175
Score = 48.3 bits (116), Expect = 7e-07
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 84 LPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
LP +FD R K P ++DQG CGSCW
Sbjct: 1 LPESFDWRKKGAVTP----VKDQGQCGSCW 26
Score = 31.8 bits (73), Expect = 0.24
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 9 CGFGCNGGFPGMAWRYWVKSG 29
GCNGG P A+ Y K+G
Sbjct: 60 GNCGCNGGLPDNAFEYIKKNG 80
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 82.7 bits (204), Expect = 1e-17
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 156 YKKDLNFGAKSYSVS--SNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTA 213
Y KD N+ Y + + EK +M EIY +GP+ +F D Y G ++V
Sbjct: 538 YAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHAR 597
Query: 214 MSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKE--KYWL 271
+ + + +G HAI ++GWGE+E + + KYW+
Sbjct: 598 RCTVDLPKHNGVYNI----------------TGWEKVNHAIVLVGWGEEEINGKLYKYWI 641
Query: 272 IANSWNTDWGDNGLFKILRGKDECGIESSIT 302
NSW +WG G FKI+RGK+ GIES
Sbjct: 642 GRNSWGKNWGKEGYFKIIRGKNFSGIESQSL 672
Score = 28.8 bits (64), Expect = 4.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 79 EVDEDLPANFDSRTKWPNCPTIREIRDQGSCGSCW 113
E+DE LP NF + N ++ +Q CGSC+
Sbjct: 377 EIDE-LPKNFTWGDPFNNNTREYDVTNQLLCGSCY 410
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 75.6 bits (186), Expect = 3e-16
Identities = 46/230 (20%), Positives = 68/230 (29%), Gaps = 74/230 (32%)
Query: 102 EIRDQGSCGSCWG-----------------------CRPYEIAPCEHHVNGTRPSCD--- 135
+++QGS GSCW Y G SCD
Sbjct: 11 PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGG 70
Query: 136 ---------ASKGHTPKCVRECQENYDVPYKKDL--------NFGAKSYSVSSNEKSIMK 178
A KG P+ D K + +N + I +
Sbjct: 71 PLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKE 130
Query: 179 EIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFD 238
+ + GPV F V+ K G E L +
Sbjct: 131 ALAKGGPVVAGFDVYSGFDRLKEGII----YEEIVYLLYEDGDL---------------- 170
Query: 239 DLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
GGHA+ I+G+ ++ + +++ NSW TDWGDNG +I
Sbjct: 171 -----------GGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 69.3 bits (170), Expect = 3e-13
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 11/72 (15%)
Query: 236 VFDDLILYKSG-------KALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKI 288
V +L+ YKSG K+L HA+ ++G G DEK+K++YW+I NSW TDWG+NG ++
Sbjct: 366 VSRELLKYKSGVYNGECGKSLN-HAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRL 424
Query: 289 LR---GKDECGI 297
R G D+CGI
Sbjct: 425 ERTNEGTDKCGI 436
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 57.8 bits (140), Expect = 7e-10
Identities = 34/148 (22%), Positives = 46/148 (31%), Gaps = 43/148 (29%)
Query: 165 KSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDN 224
Y S +M EIY GP+ + L Y G
Sbjct: 130 SDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGG---------------------- 167
Query: 225 TSQLGAEGAFTVFDDLILYKSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNG 284
V+ + L H I + GWG DE E YW++ NSW WG+ G
Sbjct: 168 -----------VYKE----YVQDPLINHIISVAGWGVDENGVE-YWIVRNSWGEPWGERG 211
Query: 285 LFKILRG-----KDECGIESSITAGVPK 307
F+I+ + IE P
Sbjct: 212 WFRIVTSSYKGARYNLAIEEDCAWADPI 239
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 55.3 bits (133), Expect = 1e-08
Identities = 35/145 (24%), Positives = 50/145 (34%), Gaps = 35/145 (24%)
Query: 167 YSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTS 226
Y ++ I+ EIY HGPV + D Y
Sbjct: 337 YGAVTDPDEIIWEIYRHGPVPASVYANSDW--YN-----------------------CDE 371
Query: 227 QLGAEGAFTVFDDLILYKSGKALG-------GHAIRILGWGEDEKSKEKYWLIANSWNT- 278
+ + DD + + L H + I+GWG DE YWL+ + W +
Sbjct: 372 NSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGG-DYWLVLDPWGSR 430
Query: 279 -DWGDNGLFKILRGKDECGIESSIT 302
W D G KI RG + IES +
Sbjct: 431 RSWCDGGTRKIARGVNAYNIESEVV 455
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 50.1 bits (119), Expect = 6e-07
Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 32/245 (13%)
Query: 77 YSEVDEDL---PANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTR-- 131
Y + DL P D R K P +++QG+CGSCW + V G +
Sbjct: 116 YRKARADLSAVPDAVDWREKGAVTP----VKNQGACGSCWAFSAVGNIESQWAVAGHKLV 171
Query: 132 -------PSCDASKGHTPKCVRECQENYDVPYKKDLNFGAKSYSVSSNEKSIMKEIYEHG 184
SCD + + + F KSY S + +
Sbjct: 172 RLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSE 231
Query: 185 PVEGAFTVFDDLILYKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEG-AFTVFDDLILY 243
GA G + +E + W ++ + + +F + +L
Sbjct: 232 LAPGA---------RIDGYVSMESSERV---MAAWLAKNGPISIAVDASSFMSYHSGVLT 279
Query: 244 KSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRGKDECGI-ESSIT 302
H + ++G+ + + YW+I NSW DWG+ G ++ G + C + ++
Sbjct: 280 SCIGEQLNHGVLLVGY--NMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVS 337
Query: 303 AGVPK 307
V +
Sbjct: 338 VHVSQ 342
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 49.1 bits (117), Expect = 1e-06
Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 43/231 (18%)
Query: 83 DLPANFDSRTKWPNCPTIREIRDQGSCGSCWGCRPYEIAPCEHHVNGTRPSCDASKGHTP 142
LP+ FD R + P ++DQGS GSCW E ++N +
Sbjct: 98 SLPSYFDRRDEGKVSP----VKDQGSGGSCWAF--ATTRSLESYLNPESAWDFSENNMKN 151
Query: 143 KCVRECQENYDVPYKKDLN-FGAKSYSVSSNEKSIMKEIYEHGPVEGAFTVFDDLILYKS 201
++ +D N + +Y GPV + + +
Sbjct: 152 LLGVPYEKGFDYTSNDGGNADMSAAY-----------LTEWSGPVYETDDPYSENSYFSP 200
Query: 202 GRFFVPGNETTAMSLI-KWTIRDNTS------QLGAEGAFTVFDDLI--------LYKSG 246
V + A + + DN + GA + D Y
Sbjct: 201 TNLPVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDS 260
Query: 247 KALGGHAIRILGWGEDEKSKEKY---------WLIANSWNTDWGDNGLFKI 288
GHA+ I+G+ +D + ++I NSW T+WG+NG F I
Sbjct: 261 GENWGHAVLIVGY-DDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWI 310
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 48.9 bits (116), Expect = 2e-06
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 199 YKSGRFFVPGNETTAMSLIKWTIRDNTSQLGAEGAFTVFDDLILYKSGKALGG-----HA 253
Y+S F + +IK I + S + A V K + L G HA
Sbjct: 667 YESEHF--HDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQNLCGDDTADHA 724
Query: 254 IRILGWGE---DEKSKEKYWLIANSWNTDWGDNGLFKI-LRGKDEC 295
+ I+G+G DE K+ YW++ NSW WGD G FK+ + G C
Sbjct: 725 VNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHC 770
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 41.7 bits (98), Expect = 3e-04
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 235 TVFDDLILYKSGKALG------GHAIRILGWG------EDEKSKEK--YWLIANSWNTDW 280
V DD YK G G HA+ ++G+G D K EK Y++I NSW W
Sbjct: 399 AVSDDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESW 458
Query: 281 GDNGLFKI 288
G+ G +I
Sbjct: 459 GEKGFIRI 466
Score = 29.4 bits (66), Expect = 2.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 71 LPELIGYSEV-DEDLP--ANFD-SRTKWPNCPTIREIRDQGSCGSCW 113
P +I Y +V + P A FD ++ W + ++DQ +CGSCW
Sbjct: 245 SPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCW 291
>gnl|CDD|226107 COG3579, PepC, Aminopeptidase C [Amino acid transport and
metabolism].
Length = 444
Score = 37.9 bits (88), Expect = 0.005
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 246 GKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
G++L HA+ + G DE W + NSW D G G F
Sbjct: 357 GESLMTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYF 397
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 244 KSGKALGGHAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
G++L HA+ + G ED+ K W + NSW D G G F
Sbjct: 353 DYGESLMTHAMVLTGVDEDDDGKPTKWKVENSWGDDSGKKGYF 395
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 32.2 bits (74), Expect = 0.34
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 252 HAIRILGWGEDEKSKEKYWLIANSWNTDWGDNGLF 286
HA+ + G DE K W + NSW G G F
Sbjct: 360 HAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYF 394
>gnl|CDD|146248 pfam03503, Chlam_OMP3, Chlamydia cysteine-rich outer membrane
protein 3.
Length = 55
Score = 26.9 bits (59), Expect = 2.8
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 115 CRPYEIAPCEHHVNGTRPSCDASKGHTPKCVREC 148
C P PCE + C+ + P C + C
Sbjct: 21 CAPKPCNPCESNKKDKDGGCNPCGTYVPSCSKPC 54
>gnl|CDD|217990 pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
The Exodeoxyribonuclease V enzyme is a multi-subunit
enzyme comprised of the proteins RecB, RecC (this
family) and RecD. This enzyme plays an important role in
homologous genetic recombination, repair of double
strand DNA breaks resistance to UV irradiation and
chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes
ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of
ssDNA or dsDNA and unwinding of dsDNA. This family
consists of two AAA domains.
Length = 756
Score = 27.6 bits (62), Expect = 9.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 254 IRILGWGEDEKSKEKYWLIANSWNTDWGDNGLFKILRG 291
IR WG D + ++K L + NT W GL ++L G
Sbjct: 428 IR---WGLDAEHRQKLGLPGDEQNT-W-RFGLDRLLLG 460
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.447
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,691,184
Number of extensions: 1453029
Number of successful extensions: 1125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1110
Number of HSP's successfully gapped: 45
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)